fast5 →
0.6.5-2+b1 →
armhf → 2018-12-21 00:27:40
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| fast5 0.6.5-2+b1 (armhf) Fri, 21 Dec 2018 00:09:36 +0000 |
+==============================================================================+
Package: fast5
Version: 0.6.5-2+b1
Source Version: 0.6.5-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-a2551eb2-3b9e-48af-93df-b9cef06d57a6' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.3 MB in 10s (2562 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'fast5' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/fast5.git
Please use:
git clone https://salsa.debian.org/med-team/fast5.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 100 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main fast5 0.6.5-2 (dsc) [2267 B]
Get:2 http://172.17.0.1/private buster-staging/main fast5 0.6.5-2 (tar) [93.6 kB]
Get:3 http://172.17.0.1/private buster-staging/main fast5 0.6.5-2 (diff) [4332 B]
Fetched 100 kB in 0s (1222 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/fast5-pMp0gm/fast5-0.6.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/fast5-pMp0gm' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-JpxSJc/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-JpxSJc/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-JpxSJc/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9768 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 39 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15795 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3
Filtered Build-Depends: debhelper (>= 11), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3
dpkg-deb: building package 'sbuild-build-depends-fast5-dummy' in '/<<BUILDDIR>>/resolver-JpxSJc/apt_archive/sbuild-build-depends-fast5-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-fast5-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ Sources [531 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ Packages [617 B]
Fetched 2481 B in 0s (10.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install fast5 build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales
libgpg-error-l10n libnss-systemd libpam-systemd openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-8 cython cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file g++-8
gcc-8 gcc-8-base gettext gettext-base groff-base hdf5-helpers
intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan5 libatomic1
libboost-python-dev libboost-python1.67-dev libboost-python1.67.0
libboost1.67-dev libbsd0 libcc1-0 libcroco3 libelf1 libexpat1-dev
libfile-stripnondeterminism-perl libgcc-8-dev libgcc1 libgfortran5
libglib2.0-0 libgomp1 libhdf5-103 libhdf5-cpp-103 libhdf5-dev libicu63
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libmagic-mgc libmagic1
libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib
libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev
libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal
libpython3.6-stdlib libpython3.7 libpython3.7-dev libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libstdc++-8-dev libstdc++6 libsz2 libtool
libubsan1 libxml2 m4 man-db mime-support po-debconf python python-all
python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2 python2-dev python2-minimal python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal
python3-pkg-resources python3-setuptools python3.6 python3.6-dev
python3.6-minimal python3.7 python3.7-dev python3.7-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-8-locales cython-doc dh-make gcc-8-doc libstdc++6-8-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg
liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.67-doc gccxml
libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev
libboost-context1.67-dev libboost-coroutine1.67-dev
libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-random1.67-dev
libboost-regex1.67-dev libboost-serialization1.67-dev
libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev
libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev
libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev
libmpfrc++-dev libntl-dev libhdf5-doc libstdc++-8-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python-doc python-tk python-setuptools-doc python2-doc
python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3.6-venv python3.6-doc python3.7-venv python3.7-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libboost-python-dev libboost-python1.67-dev
libboost-python1.67.0 libboost1.67-dev libbsd0 libcroco3 libelf1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libhdf5-103 libhdf5-cpp-103 libhdf5-dev libicu63 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
libsigsegv2 libsz2 libtool libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2 python2-dev python2-minimal python2.7
python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
python3-dev python3-distutils python3-lib2to3 python3-minimal
python3-pkg-resources python3-setuptools python3.6 python3.6-dev
python3.6-minimal python3.7 python3.7-dev python3.7-minimal
sbuild-build-depends-fast5-dummy zlib1g-dev
The following packages will be upgraded:
cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 101 newly installed, 0 to remove and 26 not upgraded.
Need to get 199 MB/199 MB of archives.
After this operation, 519 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JpxSJc/apt_archive ./ sbuild-build-depends-fast5-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-12+rpi1 [30.1 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-12+rpi1 [188 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-12+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-12+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-12+rpi1 [8108 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-12+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-12+rpi1 [104 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-12+rpi1 [5942 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-12+rpi1 [1565 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-12+rpi1 [3743 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-12+rpi1 [5848 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-12+rpi1 [5475 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-12+rpi1 [326 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-5 [394 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-5 [1089 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-5 [1844 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-5 [299 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.2~rc1-1 [582 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.2~rc1-1 [1454 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.7.1-2 [36.5 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libpython3.7-stdlib armhf 3.7.2~rc1-1 [1662 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf python3.7 armhf 3.7.2~rc1-1 [322 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.7.1-2 [20.0 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.7.1-2 [61.4 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.8~rc1-1 [567 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.8~rc1-1 [1382 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.28.4-1+b1 [1956 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf cython3 armhf 0.28.4-1+b1 [2788 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.0.0-1 [12.5 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.4 [1003 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180927 [95.8 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.4+repack-1 [33.0 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 1.0.2-1 [19.1 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libboost1.67-dev armhf 1.67.0-11 [8386 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libboost-python1.67.0 armhf 1.67.0-11 [307 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-5 [871 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-5 [30.8 MB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-5 [289 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:81 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:82 http://172.17.0.1/private buster-staging/main armhf libpython3.7 armhf 3.7.2~rc1-1 [1251 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libpython3.7-dev armhf 3.7.2~rc1-1 [47.2 MB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.7.1-2 [20.1 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf python3.7-dev armhf 3.7.2~rc1-1 [522 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.7.1-2 [1260 B]
Get:87 http://172.17.0.1/private buster-staging/main armhf libboost-python1.67-dev armhf 1.67.0-11 [319 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libboost-python-dev armhf 1.67.0.1+b1 [4224 B]
Get:89 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-12+rpi1 [205 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libhdf5-103 armhf 1.10.4+repack-1 [1258 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-103 armhf 1.10.4+repack-1 [118 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.4+repack-1 [2220 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.8~rc1-1 [1638 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.8~rc1-1 [1181 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.8~rc1-1 [43.7 MB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.7.1-2 [1076 B]
Get:99 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:100 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.15-3 [1068 B]
Get:101 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 40.6.2-1 [181 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 40.6.2-1 [380 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.8~rc1-1 [245 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.7.1-2 [1068 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.8~rc1-1 [509 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.7.1-2 [1076 B]
Get:107 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 40.6.2-1 [152 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 40.6.2-1 [303 kB]
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Unpacking sbuild-build-depends-fast5-dummy (0.invalid.0) ...
Setting up cpp-8 (8.2.0-12+rpi1) ...
Setting up libgomp1:armhf (8.2.0-12+rpi1) ...
Setting up libatomic1:armhf (8.2.0-12+rpi1) ...
Setting up libaec0:armhf (1.0.2-1) ...
Setting up libcc1-0:armhf (8.2.0-12+rpi1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up mime-support (3.61) ...
Installing new version of config file /etc/mime.types ...
Setting up libicu63:armhf (63.1-5) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.58.1-2) ...
No schema files found: removed existing output file.
Setting up gettext-base (0.19.8.1-9) ...
Setting up libpipeline1:armhf (1.5.0-2) ...
Setting up m4 (1.4.18-2) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b1) ...
Setting up libmagic-mgc (1:5.34-2) ...
Setting up libmagic1:armhf (1:5.34-2) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libpython3.6-minimal:armhf (3.6.8~rc1-1) ...
Setting up libboost-python1.67.0 (1.67.0-11) ...
Processing triggers for libc-bin (2.28-2) ...
Setting up dwz (0.12-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libexpat1-dev:armhf (2.2.6-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libasan5:armhf (8.2.0-12+rpi1) ...
Setting up libgfortran5:armhf (8.2.0-12+rpi1) ...
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Setting up libpython2.7-stdlib:armhf (2.7.15-5) ...
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Setting up libsz2:armhf (1.0.2-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
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Setting up libaec-dev:armhf (1.0.2-1) ...
Setting up python3.6-minimal (3.6.8~rc1-1) ...
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Setting up autoconf (2.69-11) ...
Setting up libhdf5-103:armhf (1.10.4+repack-1) ...
Setting up file (1:5.34-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
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Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up libgcc-8-dev:armhf (8.2.0-12+rpi1) ...
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Setting up python2.7-dev (2.7.15-5) ...
Setting up libpython3.6:armhf (3.6.8~rc1-1) ...
Setting up libpython3-dev:armhf (3.7.1-2) ...
Setting up libtool (2.4.6-6) ...
Setting up libpython3-stdlib:armhf (3.7.1-2) ...
Setting up libstdc++-8-dev:armhf (8.2.0-12+rpi1) ...
Setting up python3.6 (3.6.8~rc1-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3 (3.7.1-2) ...
Setting up libhdf5-cpp-103:armhf (1.10.4+repack-1) ...
Setting up libhdf5-dev (1.10.4+repack-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up python3-pkg-resources (40.6.2-1) ...
Setting up python3.7-dev (3.7.2~rc1-1) ...
Setting up libpython3.6-dev:armhf (3.6.8~rc1-1) ...
Setting up python2 (2.7.15-3) ...
Setting up gcc-8 (8.2.0-12+rpi1) ...
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Setting up g++-8 (8.2.0-12+rpi1) ...
Setting up libpython-stdlib:armhf (2.7.15-3) ...
Setting up libpython3-all-dev:armhf (3.7.1-2) ...
Setting up libboost1.67-dev:armhf (1.67.0-11) ...
Setting up python2-dev (2.7.15-3) ...
Setting up cython3 (0.28.4-1+b1) ...
Setting up python3.6-dev (3.6.8~rc1-1) ...
Setting up python3-lib2to3 (3.7.1-1) ...
Setting up python3-distutils (3.7.1-1) ...
Setting up python (2.7.15-3) ...
Setting up libpython-dev:armhf (2.7.15-3) ...
Setting up python-dev (2.7.15-3) ...
Setting up libpython-all-dev:armhf (2.7.15-3) ...
Setting up python-pkg-resources (40.6.2-1) ...
Setting up cython (0.28.4-1+b1) ...
Setting up python3-setuptools (40.6.2-1) ...
Setting up dh-python (3.20180927) ...
Setting up python-all (2.7.15-3) ...
Setting up python-setuptools (40.6.2-1) ...
Setting up python3-dev (3.7.1-2) ...
Setting up python-all-dev (2.7.15-3) ...
Setting up python3-all (3.7.1-2) ...
Setting up libboost-python1.67-dev (1.67.0-11) ...
Setting up python3-all-dev (3.7.1-2) ...
Setting up libboost-python-dev (1.67.0.1+b1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (11.5.4) ...
Setting up sbuild-build-depends-fast5-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (1.0.0-1) ...
Processing triggers for libc-bin (2.28-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-10+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-12+rpi1 gcc-8_8.2.0-12+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-12+rpi1 libstdc++6_8.2.0-12+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-10+rpi1 binutils-arm-linux-gnueabihf_2.31.1-10+rpi1 binutils-common_2.31.1-10+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-12+rpi1 cython_0.28.4-1+b1 cython3_0.28.4-1+b1 dash_0.5.10.2-2 dbus_1.12.12-1 dbus-user-session_1.12.12-1 debconf_1.5.69 debhelper_11.5.4 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-12+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-12+rpi1 gcc-8-base_8.2.0-12+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.11-1 gnupg-agent_2.2.11-1 gnupg-l10n_2.2.11-1 gnupg-utils_2.2.11-1 gpg_2.2.11-1 gpg-agent_2.2.11-1 gpg-wks-client_2.2.11-1 gpg-wks-server_2.2.11-1 gpgconf_2.2.11-1 gpgsm_2.2.11-1 gpgv_2.2.11-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hdf5-helpers_1.10.4+repack-1 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapparmor1_2.13.1-3+b1 libapt-pkg5.0_1.8.0~alpha2 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-12+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-12+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-10+rpi1 libblkid1_2.33-0.2 libboost-python-dev_1.67.0.1+b1 libboost-python1.67-dev_1.67.0-11 libboost-python1.67.0_1.67.0-11 libboost1.67-dev_1.67.0-11 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-2 libc-dev-bin_2.28-2 libc6_2.28-2 libc6-dev_2.28-2 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-12+rpi1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.6-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b5 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-12+rpi1 libgcc1_1:8.2.0-12+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libgfortran5_8.2.0-12+rpi1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-12+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgssapi-krb5-2_1.16.1-1 libhdf5-103_1.10.4+repack-1 libhdf5-cpp-103_1.10.4+repack-1 libhdf5-dev_1.10.4+repack-1 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-2+b1 libisl19_0.20-2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-2 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1+b1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-2 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnpth0_1.6-1 libnss-systemd_239-15+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-15+rpi1 libpam0g_1.1.8-3.8 libpcre3_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libplymouth4_0.9.4-1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-5 libpython2.7-dev_2.7.15-5 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libpython3-all-dev_3.7.1-2 libpython3-dev_3.7.1-2 libpython3-stdlib_3.7.1-2 libpython3.6_3.6.8~rc1-1 libpython3.6-dev_3.6.8~rc1-1 libpython3.6-minimal_3.6.8~rc1-1 libpython3.6-stdlib_3.6.8~rc1-1 libpython3.7_3.7.2~rc1-1 libpython3.7-dev_3.7.2~rc1-1 libpython3.7-minimal_3.7.2~rc1-1 libpython3.7-stdlib_3.7.2~rc1-1 libreadline7_7.0-5 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33-0.2 libsqlite3-0_3.26.0-3 libss2_1.44.4-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-12+rpi1 libstdc++6_8.2.0-12+rpi1 libsystemd0_239-15+rpi1 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libubsan1_8.2.0-12+rpi1 libudev1_239-15+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33-0.2 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.33-0.2 multiarch-support_2.28-2 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-pkg-resources_40.6.2-1 python-setuptools_40.6.2-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-dev_2.7.15-5 python2.7-minimal_2.7.15-5 python3_3.7.1-2 python3-all_3.7.1-2 python3-all-dev_3.7.1-2 python3-dev_3.7.1-2 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.7.1-2 python3-pkg-resources_40.6.2-1 python3-setuptools_40.6.2-1 python3.6_3.6.8~rc1-1 python3.6-dev_3.6.8~rc1-1 python3.6-minimal_3.6.8~rc1-1 python3.7_3.7.2~rc1-1 python3.7-dev_3.7.2~rc1-1 python3.7-minimal_3.7.2~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fast5-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-15+rpi1 systemd-sysv_239-15+rpi1 sysvinit-utils_2.93-1 tar_1.30+dfsg-3+rpi1 tzdata_2018g-1 udev_239-15+rpi1 util-linux_2.33-0.2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 9 12:45:51 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./fast5_0.6.5-2.dsc
dpkg-source: info: extracting fast5 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz
dpkg-source: info: unpacking fast5_0.6.5-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rpath.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.6.5-2+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-a2551eb2-3b9e-48af-93df-b9cef06d57a6
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package fast5
dpkg-buildpackage: info: source version 0.6.5-2+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp
fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild \
--sourcedirectory=python
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_auto_clean
I: pybuild base:217: python2.7 setup.py clean
Compiling fast5/fast5.pyx because it changed.
[1/1] Cythonizing fast5/fast5.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_fast5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:217: python3.6 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_fast5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.6' does not exist -- can't clean it
I: pybuild base:217: python3.7 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_fast5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
rm -rf python/fast5/fast5.cpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python
dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python
debian/rules build-arch
dh build-arch --with python2,python3 --buildsystem=pybuild \
--sourcedirectory=python
dh_update_autotools_config -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_autoreconf -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_auto_configure -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:217: python2.7 setup.py config
Compiling fast5/fast5.pyx because it changed.
[1/1] Cythonizing fast5/fast5.pyx
running config
I: pybuild base:217: python3.6 setup.py config
running config
I: pybuild base:217: python3.7 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:217: /usr/bin/python setup.py build
running build
running build_ext
building 'fast5' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/fast5
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python2.7 -c fast5/fast5.cpp -o build/temp.linux-armhf-2.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
fast5/fast5.cpp:1609:114: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_6Logger_1set_levels_from_options = {"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:2769:93: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_4File_15is_valid_file = {"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:9957:102: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_1__pyx_unpickle_Logger = {"__pyx_unpickle_Logger", (PyCFunction)__pyx_pw_5fast5_1__pyx_unpickle_Logger, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11560:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11653:25: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"open", (PyCFunction)__pyx_pw_5fast5_4File_9open, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11654:27: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"create", (PyCFunction)__pyx_pw_5fast5_4File_11create, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11656:34: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11665:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_33have_raw_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11668:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_samples_params", (PyCFunction)__pyx_pw_5fast5_4File_39get_raw_samples_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11669:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_int_samples", (PyCFunction)__pyx_pw_5fast5_4File_41get_raw_int_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11670:36: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_43get_raw_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11672:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_group", (PyCFunction)__pyx_pw_5fast5_4File_47have_eventdetection_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11673:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_params", (PyCFunction)__pyx_pw_5fast5_4File_49get_eventdetection_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11674:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_read_name_list", (PyCFunction)__pyx_pw_5fast5_4File_51get_eventdetection_read_name_list, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11675:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_53have_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11676:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_55have_eventdetection_events_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11677:52: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_57have_eventdetection_events_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11678:53: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_events_params", (PyCFunction)__pyx_pw_5fast5_4File_59get_eventdetection_events_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11679:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_61get_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11682:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_group", (PyCFunction)__pyx_pw_5fast5_4File_67have_basecall_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11683:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_strand_group", (PyCFunction)__pyx_pw_5fast5_4File_69have_basecall_strand_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11691:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_85have_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11692:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq_unpack", (PyCFunction)__pyx_pw_5fast5_4File_87have_basecall_fastq_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11693:45: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq_pack", (PyCFunction)__pyx_pw_5fast5_4File_89have_basecall_fastq_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11694:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_91get_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11695:38: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_93have_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11696:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_95get_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11697:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_97have_basecall_model, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11698:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model_file", (PyCFunction)__pyx_pw_5fast5_4File_99get_basecall_model_file, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11699:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model_params", (PyCFunction)__pyx_pw_5fast5_4File_101get_basecall_model_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11700:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_103get_basecall_model, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11701:41: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_105have_basecall_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11702:48: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_107have_basecall_events_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11703:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_109have_basecall_events_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11704:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_events_params", (PyCFunction)__pyx_pw_5fast5_4File_111get_basecall_events_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11705:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_113get_basecall_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11706:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_115have_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11709:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_121get_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11803:24: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"run", (PyCFunction)__pyx_pw_5fast5_11File_Packer_11run, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from fast5/fast5.cpp:624:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from fast5/fast5.cpp:624:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector<fast5::EventDetection_Event>&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function ‘void fast5::File_Packer::pack_ed(const fast5::File&, fast5::File&, fast5::File_Packer::Counts&) const’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-7yWIbs/python2.7-2.7.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_fast5/build/fast5.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/f5ls -> build/scripts-2.7
copying and adjusting bin/f5pack -> build/scripts-2.7
changing mode of build/scripts-2.7/f5ls from 664 to 775
changing mode of build/scripts-2.7/f5pack from 664 to 775
I: pybuild base:217: /usr/bin/python3.6 setup.py build
running build
running build_ext
building 'fast5' extension
creating build/temp.linux-armhf-3.6
creating build/temp.linux-armhf-3.6/fast5
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.6m -c fast5/fast5.cpp -o build/temp.linux-armhf-3.6/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
fast5/fast5.cpp:1609:114: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_6Logger_1set_levels_from_options = {"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:2769:93: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_4File_15is_valid_file = {"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:9957:102: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_1__pyx_unpickle_Logger = {"__pyx_unpickle_Logger", (PyCFunction)__pyx_pw_5fast5_1__pyx_unpickle_Logger, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11560:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11653:25: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"open", (PyCFunction)__pyx_pw_5fast5_4File_9open, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11654:27: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"create", (PyCFunction)__pyx_pw_5fast5_4File_11create, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11656:34: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11665:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_33have_raw_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11668:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_samples_params", (PyCFunction)__pyx_pw_5fast5_4File_39get_raw_samples_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11669:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_int_samples", (PyCFunction)__pyx_pw_5fast5_4File_41get_raw_int_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11670:36: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_43get_raw_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11672:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_group", (PyCFunction)__pyx_pw_5fast5_4File_47have_eventdetection_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11673:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_params", (PyCFunction)__pyx_pw_5fast5_4File_49get_eventdetection_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11674:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_read_name_list", (PyCFunction)__pyx_pw_5fast5_4File_51get_eventdetection_read_name_list, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11675:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_53have_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11676:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_55have_eventdetection_events_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11677:52: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_57have_eventdetection_events_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11678:53: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_events_params", (PyCFunction)__pyx_pw_5fast5_4File_59get_eventdetection_events_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11679:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_61get_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11682:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_group", (PyCFunction)__pyx_pw_5fast5_4File_67have_basecall_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11683:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_strand_group", (PyCFunction)__pyx_pw_5fast5_4File_69have_basecall_strand_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11691:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_85have_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11692:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq_unpack", (PyCFunction)__pyx_pw_5fast5_4File_87have_basecall_fastq_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11693:45: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq_pack", (PyCFunction)__pyx_pw_5fast5_4File_89have_basecall_fastq_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11694:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_91get_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11695:38: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_93have_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11696:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_95get_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11697:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_97have_basecall_model, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11698:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model_file", (PyCFunction)__pyx_pw_5fast5_4File_99get_basecall_model_file, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11699:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model_params", (PyCFunction)__pyx_pw_5fast5_4File_101get_basecall_model_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11700:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_103get_basecall_model, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11701:41: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_105have_basecall_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11702:48: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_107have_basecall_events_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11703:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_109have_basecall_events_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11704:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_events_params", (PyCFunction)__pyx_pw_5fast5_4File_111get_basecall_events_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11705:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_113get_basecall_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11706:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_115have_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11709:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_121get_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11803:24: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"run", (PyCFunction)__pyx_pw_5fast5_11File_Packer_11run, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp: In function ‘PyObject* __Pyx_PyCFunction_FastCall(PyObject*, PyObject**, Py_ssize_t)’:
fast5/fast5.cpp:13068:54: warning: cast between incompatible function types from ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} to ‘__Pyx_PyCFunctionFastWithKeywords’ {aka ‘_object* (*)(_object*, _object* const*, int, _object*)’} [-Wcast-function-type]
return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL);
^~~~
fast5/fast5.cpp:13070:42: warning: cast between incompatible function types from ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} to ‘__Pyx_PyCFunctionFast’ {aka ‘_object* (*)(_object*, _object* const*, int)’} [-Wcast-function-type]
return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs);
^~~~
In file included from /usr/include/c++/8/vector:69,
from fast5/fast5.cpp:624:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from fast5/fast5.cpp:624:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector<fast5::EventDetection_Event>&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function ‘void fast5::File_Packer::pack_ed(const fast5::File&, fast5::File&, fast5::File_Packer::Counts&) const’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_fast5/build/fast5.cpython-36m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.6
copying and adjusting bin/f5ls -> build/scripts-3.6
copying and adjusting bin/f5pack -> build/scripts-3.6
changing mode of build/scripts-3.6/f5ls from 664 to 775
changing mode of build/scripts-3.6/f5pack from 664 to 775
I: pybuild base:217: /usr/bin/python3 setup.py build
running build
running build_ext
building 'fast5' extension
creating build/temp.linux-armhf-3.7
creating build/temp.linux-armhf-3.7/fast5
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.7m -c fast5/fast5.cpp -o build/temp.linux-armhf-3.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
fast5/fast5.cpp:1609:114: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_6Logger_1set_levels_from_options = {"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:2769:93: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_4File_15is_valid_file = {"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:9957:102: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
static PyMethodDef __pyx_mdef_5fast5_1__pyx_unpickle_Logger = {"__pyx_unpickle_Logger", (PyCFunction)__pyx_pw_5fast5_1__pyx_unpickle_Logger, METH_VARARGS|METH_KEYWORDS, 0};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11560:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"set_levels_from_options", (PyCFunction)__pyx_pw_5fast5_6Logger_1set_levels_from_options, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11653:25: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"open", (PyCFunction)__pyx_pw_5fast5_4File_9open, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11654:27: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"create", (PyCFunction)__pyx_pw_5fast5_4File_11create, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11656:34: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"is_valid_file", (PyCFunction)__pyx_pw_5fast5_4File_15is_valid_file, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11665:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_33have_raw_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11668:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_samples_params", (PyCFunction)__pyx_pw_5fast5_4File_39get_raw_samples_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11669:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_int_samples", (PyCFunction)__pyx_pw_5fast5_4File_41get_raw_int_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11670:36: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_raw_samples", (PyCFunction)__pyx_pw_5fast5_4File_43get_raw_samples, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11672:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_group", (PyCFunction)__pyx_pw_5fast5_4File_47have_eventdetection_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11673:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_params", (PyCFunction)__pyx_pw_5fast5_4File_49get_eventdetection_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11674:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_read_name_list", (PyCFunction)__pyx_pw_5fast5_4File_51get_eventdetection_read_name_list, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11675:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_53have_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11676:54: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_55have_eventdetection_events_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11677:52: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_eventdetection_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_57have_eventdetection_events_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11678:53: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_events_params", (PyCFunction)__pyx_pw_5fast5_4File_59get_eventdetection_events_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11679:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_eventdetection_events", (PyCFunction)__pyx_pw_5fast5_4File_61get_eventdetection_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11682:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_group", (PyCFunction)__pyx_pw_5fast5_4File_67have_basecall_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11683:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_strand_group", (PyCFunction)__pyx_pw_5fast5_4File_69have_basecall_strand_group, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11691:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_85have_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11692:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq_unpack", (PyCFunction)__pyx_pw_5fast5_4File_87have_basecall_fastq_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11693:45: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_fastq_pack", (PyCFunction)__pyx_pw_5fast5_4File_89have_basecall_fastq_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11694:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_fastq", (PyCFunction)__pyx_pw_5fast5_4File_91get_basecall_fastq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11695:38: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_93have_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11696:37: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_seq", (PyCFunction)__pyx_pw_5fast5_4File_95get_basecall_seq, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11697:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_97have_basecall_model, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11698:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model_file", (PyCFunction)__pyx_pw_5fast5_4File_99get_basecall_model_file, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11699:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model_params", (PyCFunction)__pyx_pw_5fast5_4File_101get_basecall_model_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11700:39: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_model", (PyCFunction)__pyx_pw_5fast5_4File_103get_basecall_model, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11701:41: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_105have_basecall_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11702:48: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events_unpack", (PyCFunction)__pyx_pw_5fast5_4File_107have_basecall_events_unpack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11703:46: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_events_pack", (PyCFunction)__pyx_pw_5fast5_4File_109have_basecall_events_pack, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11704:47: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_events_params", (PyCFunction)__pyx_pw_5fast5_4File_111get_basecall_events_params, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11705:40: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_events", (PyCFunction)__pyx_pw_5fast5_4File_113get_basecall_events, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11706:44: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"have_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_115have_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11709:43: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"get_basecall_alignment", (PyCFunction)__pyx_pw_5fast5_4File_121get_basecall_alignment, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp:11803:24: warning: cast between incompatible function types from ‘PyObject* (*)(PyObject*, PyObject*, PyObject*)’ {aka ‘_object* (*)(_object*, _object*, _object*)’} to ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} [-Wcast-function-type]
{"run", (PyCFunction)__pyx_pw_5fast5_11File_Packer_11run, METH_VARARGS|METH_KEYWORDS, 0},
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
fast5/fast5.cpp: In function ‘PyObject* __Pyx_PyCFunction_FastCall(PyObject*, PyObject**, Py_ssize_t)’:
fast5/fast5.cpp:13068:54: warning: cast between incompatible function types from ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} to ‘_PyCFunctionFastWithKeywords’ {aka ‘_object* (*)(_object*, _object* const*, int, _object*)’} [-Wcast-function-type]
return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL);
^~~~
fast5/fast5.cpp:13070:42: warning: cast between incompatible function types from ‘PyCFunction’ {aka ‘_object* (*)(_object*, _object*)’} to ‘_PyCFunctionFast’ {aka ‘_object* (*)(_object*, _object* const*, int)’} [-Wcast-function-type]
return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs);
^~~~
In file included from /usr/include/c++/8/vector:69,
from fast5/fast5.cpp:624:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:64,
from fast5/fast5.cpp:624:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector<fast5::EventDetection_Event>&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h: In member function ‘void fast5::File_Packer::pack_ed(const fast5::File&, fast5::File&, fast5::File_Packer::Counts&) const’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.7/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_fast5/build/fast5.cpython-37m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.7
copying and adjusting bin/f5ls -> build/scripts-3.7
copying and adjusting bin/f5pack -> build/scripts-3.7
changing mode of build/scripts-3.7/f5ls from 664 to 775
changing mode of build/scripts-3.7/f5pack from 664 to 775
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5ls f5ls.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/8/vector:64,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = std::allocator<long long int>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = std::allocator<fast5::EventDetection_Event>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = std::allocator<fast5::Basecall_Event>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = std::allocator<fast5::Basecall_Alignment_Entry>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*; _Tp = long long int]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = std::allocator<fast5::Basecall_Model_State>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/ios:40,
from /usr/include/c++/8/ostream:38,
from /usr/include/c++/8/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<long long int*>; _OI = long long int*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::EventDetection_Event*>; _OI = fast5::EventDetection_Event*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Event*>; _OI = fast5::Basecall_Event*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _OI = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/stl_algobase.h:67,
from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/ios:40,
from /usr/include/c++/8/ostream:38,
from /usr/include/c++/8/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = long long int*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/ios:40,
from /usr/include/c++/8/ostream:38,
from /usr/include/c++/8/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Model_State*>; _OI = fast5::Basecall_Model_State*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algobase.h:67,
from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/ios:40,
from /usr/include/c++/8/ostream:38,
from /usr/include/c++/8/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5ls-full f5ls-full.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/8/vector:64,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/vector:69,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = std::allocator<long long int>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = std::allocator<fast5::EventDetection_Event>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = std::allocator<fast5::Basecall_Event>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = std::allocator<fast5::Basecall_Alignment_Entry>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*; _Tp = long long int]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = std::allocator<fast5::Basecall_Model_State>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/ios:40,
from /usr/include/c++/8/ostream:38,
from /usr/include/c++/8/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<long long int*>; _OI = long long int*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::EventDetection_Event*>; _OI = fast5::EventDetection_Event*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Event*>; _OI = fast5::Basecall_Event*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _OI = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:101:27: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/bits/stl_algobase.h:67,
from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/ios:40,
from /usr/include/c++/8/ostream:38,
from /usr/include/c++/8/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = long long int*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/ios:40,
from /usr/include/c++/8/ostream:38,
from /usr/include/c++/8/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/8/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Model_State*>; _OI = fast5::Basecall_Model_State*]’:
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/8/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
In file included from /usr/include/c++/8/bits/stl_algobase.h:67,
from /usr/include/c++/8/bits/char_traits.h:39,
from /usr/include/c++/8/ios:40,
from /usr/include/c++/8/ostream:38,
from /usr/include/c++/8/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/8/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/8/bits/stl_iterator.h:1238:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o hdf5-mod hdf5-mod.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/8/vector:69,
from /<<PKGBUILDDIR>>/src/../include/fast5/hdf5_tools.hpp:20,
from hdf5-mod.cpp:12:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<PKGBUILDDIR>>/src/../include/fast5/hdf5_tools.hpp:20,
from hdf5-mod.cpp:12:
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /<<PKGBUILDDIR>>/src/../include -o f5-mod f5-mod.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/8/vector:69,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5-mod.cpp:12:
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’} changed in GCC 7.1
In file included from /usr/include/c++/8/vector:63,
from /<<PKGBUILDDIR>>/src/../include/fast5.hpp:19,
from f5-mod.cpp:12:
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/8/bits/stl_uninitialized.h:311:2: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
return std::__uninitialized_copy_a
~~~~~~~~~~~~~~~~~~~~~~~~~~~
(_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:289:37: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/8/bits/stl_uninitialized.h:134:15: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
return std::__uninitialized_copy<__is_trivial(_ValueType1)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __is_trivial(_ValueType2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
&& __assignable>::
~~~~~~~~~~~~~~~~~~
__uninit_copy(__first, __last, __result);
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2,python3 --buildsystem=pybuild \
--sourcedirectory=python
dh_testroot -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_prep -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installdirs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_auto_install -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:217: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/python-fast5
running install
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-fast5
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib/python2.7/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7_fast5/build/fast5.so -> /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib/python2.7/dist-packages
running install_egg_info
running egg_info
creating fast5.egg-info
writing fast5.egg-info/PKG-INFO
writing top-level names to fast5.egg-info/top_level.txt
writing dependency_links to fast5.egg-info/dependency_links.txt
writing manifest file 'fast5.egg-info/SOURCES.txt'
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin
copying build/scripts-2.7/f5pack -> /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin
copying build/scripts-2.7/f5ls -> /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin/f5pack to 775
changing mode of /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin/f5ls to 775
I: pybuild base:217: /usr/bin/python3.6 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-fast5
running install
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.6
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.6/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.6_fast5/build/fast5.cpython-36m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.6/dist-packages
running install_egg_info
running egg_info
writing fast5.egg-info/PKG-INFO
writing dependency_links to fast5.egg-info/dependency_links.txt
writing top-level names to fast5.egg-info/top_level.txt
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.6/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.6/f5pack -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.6/f5ls -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5pack to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5ls to 775
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-fast5
running install
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.7/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_fast5/build/fast5.cpython-37m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.7/dist-packages
running install_egg_info
running egg_info
writing fast5.egg-info/PKG-INFO
writing dependency_links to fast5.egg-info/dependency_links.txt
writing top-level names to fast5.egg-info/top_level.txt
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.7/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.7/f5pack -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.7/f5ls -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5pack to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5ls to 775
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mkdir -p debian/fast5/usr/bin/
mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/
rm -rf debian/python-fast5/usr/bin/ debian/python3-fast5/usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installchangelogs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installexamples -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installman -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installcatalogs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installcron -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installdebconf -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installemacsen -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installifupdown -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installinfo -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_python2 -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: dh_python2 fs:329: renaming fast5.so to fast5.arm-linux-gnueabihf.so
dh_python3 -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installinit -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installsystemd -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installmenu -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installmime -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installmodules -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installlogcheck -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installlogrotate -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installpam -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installppp -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installudev -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installgsettings -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_bugfiles -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_ucf -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_lintian -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_gconf -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
dh_icons -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_perl -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_usrlocal -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_link -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installwm -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installxfonts -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_strip_nondeterminism -a -O--buildsystem=pybuild -O--sourcedirectory=python
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
dh_compress -X .cpp -X .hpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_missing -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installdeb -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_gencontrol -a -O--buildsystem=pybuild -O--sourcedirectory=python
dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python-fast5: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-fast5: substitution variable ${python:Versions} unused, but is defined
dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined
dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined
dpkg-gencontrol: warning: package python-fast5: substitution variable ${python:Provides} unused, but is defined
dpkg-gencontrol: warning: package python-fast5: substitution variable ${python:Versions} unused, but is defined
dh_md5sums -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_builddeb -a -O--buildsystem=pybuild -O--sourcedirectory=python
dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-2+b1_armhf.deb'.
dpkg-deb: building package 'python-fast5' in '../python-fast5_0.6.5-2+b1_armhf.deb'.
dpkg-deb: building package 'python-fast5-dbgsym' in '../python-fast5-dbgsym_0.6.5-2+b1_armhf.deb'.
dpkg-deb: building package 'python3-fast5-dbgsym' in '../python3-fast5-dbgsym_0.6.5-2+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../fast5_0.6.5-2+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-12-21T00:27:36Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
fast5_0.6.5-2+b1_armhf.changes:
-------------------------------
Format: 1.8
Date: Tue, 09 Oct 2018 14:34:41 +0200
Source: fast5 (0.6.5-2)
Binary: fast5 libfast5-dev python-fast5 python3-fast5
Binary-Only: yes
Architecture: armhf
Version: 0.6.5-2+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
fast5 - utilities for manipulating Oxford Nanopore Fast5 files
libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2
python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
Changes:
fast5 (0.6.5-2+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Files:
327b47ef921bb5ecdf56995b4a6a3fb9 7662 science optional fast5_0.6.5-2+b1_armhf.buildinfo
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07ba78ce301b59cb6b1dfcd3acba5d55 4800424 debug optional python3-fast5-dbgsym_0.6.5-2+b1_armhf.deb
3640dc7f68a10a3a67bd885fc1f44a31 224952 python optional python3-fast5_0.6.5-2+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python-fast5-dbgsym_0.6.5-2+b1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 2415652 bytes: control archive=548 bytes.
400 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python-fast5-dbgsym
Source: fast5 (0.6.5-2)
Version: 0.6.5-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2553
Depends: python-fast5 (= 0.6.5-2+b1)
Section: debug
Priority: optional
Description: debug symbols for python-fast5
Build-Ids: 94a43ef775bf28562bd48d638480bacddd383029
drwxr-xr-x root/root 0 2018-10-09 12:34 ./
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/debug/.build-id/94/
-rw-r--r-- root/root 2603260 2018-10-09 12:34 ./usr/lib/debug/.build-id/94/a43ef775bf28562bd48d638480bacddd383029.debug
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-10-09 12:34 ./usr/share/doc/python-fast5-dbgsym -> python-fast5
python-fast5_0.6.5-2+b1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 183404 bytes: control archive=924 bytes.
638 bytes, 15 lines control
639 bytes, 7 lines md5sums
Package: python-fast5
Source: fast5 (0.6.5-2)
Version: 0.6.5-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 632
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libhdf5-103, libstdc++6 (>= 5.2), python (<< 2.8), python (>= 2.7~), python:any (<< 2.8), python:any (>= 2.7~)
Section: python
Priority: optional
Homepage: https://github.com/mateidavid/fast5
Description: library for reading Oxford Nanopore Fast5 files -- Python 2
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 2 library
drwxr-xr-x root/root 0 2018-10-09 12:34 ./
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/
-rw-r--r-- root/root 278 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt
-rw-r--r-- root/root 6 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/top_level.txt
-rw-r--r-- root/root 628540 2018-10-09 12:34 ./usr/lib/python2.7/dist-packages/fast5.arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/python-fast5/
-rw-r--r-- root/root 220 2018-10-09 12:34 ./usr/share/doc/python-fast5/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1598 2018-10-09 12:34 ./usr/share/doc/python-fast5/changelog.Debian.gz
-rw-r--r-- root/root 1441 2018-10-09 12:34 ./usr/share/doc/python-fast5/copyright
python3-fast5-dbgsym_0.6.5-2+b1_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 4800424 bytes: control archive=608 bytes.
444 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: python3-fast5-dbgsym
Source: fast5 (0.6.5-2)
Version: 0.6.5-2+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5121
Depends: python3-fast5 (= 0.6.5-2+b1)
Section: debug
Priority: optional
Description: debug symbols for python3-fast5
Build-Ids: 3db35ffbf3cf4a94c4b1a4d89b0c65ca459434ff 80dbcfc301b9383a337fafe77d91d075aa3bce8f
drwxr-xr-x root/root 0 2018-10-09 12:34 ./
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/debug/.build-id/3d/
-rw-r--r-- root/root 2616768 2018-10-09 12:34 ./usr/lib/debug/.build-id/3d/b35ffbf3cf4a94c4b1a4d89b0c65ca459434ff.debug
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/debug/.build-id/80/
-rw-r--r-- root/root 2614648 2018-10-09 12:34 ./usr/lib/debug/.build-id/80/dbcfc301b9383a337fafe77d91d075aa3bce8f.debug
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-10-09 12:34 ./usr/share/doc/python3-fast5-dbgsym -> python3-fast5
python3-fast5_0.6.5-2+b1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 224952 bytes: control archive=948 bytes.
599 bytes, 15 lines control
751 bytes, 8 lines md5sums
Package: python3-fast5
Source: fast5 (0.6.5-2)
Version: 0.6.5-2+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1246
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libhdf5-103, libstdc++6 (>= 5.2), python3 (<< 3.8), python3 (>= 3.6~)
Section: python
Priority: optional
Homepage: https://github.com/mateidavid/fast5
Description: library for reading Oxford Nanopore Fast5 files -- Python 3
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 3 library
drwxr-xr-x root/root 0 2018-10-09 12:34 ./
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python3/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/
-rw-r--r-- root/root 278 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt
-rw-r--r-- root/root 6 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/top_level.txt
-rw-r--r-- root/root 628604 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5.cpython-36m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 628604 2018-10-09 12:34 ./usr/lib/python3/dist-packages/fast5.cpython-37m-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-10-09 12:34 ./usr/share/doc/python3-fast5/
-rw-r--r-- root/root 220 2018-10-09 12:34 ./usr/share/doc/python3-fast5/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1598 2018-10-09 12:34 ./usr/share/doc/python3-fast5/changelog.Debian.gz
-rw-r--r-- root/root 1441 2018-10-09 12:34 ./usr/share/doc/python3-fast5/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 87808
Build-Time: 452
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 609
Job: fast5_0.6.5-2
Machine Architecture: armhf
Package: fast5
Package-Time: 1080
Source-Version: 0.6.5-2
Space: 87808
Status: successful
Version: 0.6.5-2+b1
--------------------------------------------------------------------------------
Finished at 2018-12-21T00:27:36Z
Build needed 00:18:00, 87808k disk space