fast5 →
0.6.2-6 →
armhf → 2017-09-23 17:43:42
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| fast5 0.6.2-6 (armhf) Sat, 23 Sep 2017 17:25:15 +0000 |
+==============================================================================+
Package: fast5
Version: 0.6.2-6
Source Version: 0.6.2-6
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-11d52245-3691-4816-ac53-7c156ff2d278' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
Fetched 22.3 MB in 7s (2792 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'fast5' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/fast5.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/fast5.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 70.4 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main fast5 0.6.2-6 (dsc) [2381 B]
Get:2 http://172.17.0.1/private buster-staging/main fast5 0.6.2-6 (tar) [63.8 kB]
Get:3 http://172.17.0.1/private buster-staging/main fast5 0.6.2-6 (diff) [4264 B]
Fetched 70.4 kB in 0s (897 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/fast5-S5dSh1/fast5-0.6.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/fast5-S5dSh1' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-KWO0hW/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-KWO0hW/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-KWO0hW/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (8359 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 67 not upgraded.
Need to get 774 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [774 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 774 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15017 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3
Filtered Build-Depends: debhelper (>= 9), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3
dpkg-deb: building package 'sbuild-build-depends-fast5-dummy' in '/<<BUILDDIR>>/resolver-KWO0hW/apt_archive/sbuild-build-depends-fast5-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-fast5-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ Sources [534 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ Packages [617 B]
Fetched 2484 B in 0s (9730 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install fast5 build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libsasl2-modules openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-7 cython cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism file g++-7 gcc-7
gcc-7-base gettext gettext-base groff-base hdf5-helpers intltool-debian
libaec-dev libaec0 libarchive-zip-perl libasan4 libatomic1
libboost-python-dev libboost-python1.62-dev libboost-python1.62.0
libboost1.62-dev libbsd0 libcc1-0 libcilkrts5 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgcc-7-dev libgcc1
libgfortran4 libglib2.0-0 libgomp1 libhdf5-100 libhdf5-cpp-100 libhdf5-dev
libicu57 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libmagic-mgc
libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib
libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
libsigsegv2 libstdc++-7-dev libstdc++6 libsz2 libtimedate-perl libtool
libubsan0 libxml2 m4 man-db mime-support po-debconf python python-all
python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal python3
python3-all python3-all-dev python3-dev python3-minimal
python3-pkg-resources python3-setuptools python3.5 python3.5-dev
python3.5-minimal python3.6 python3.6-dev python3.6-minimal zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-7-locales cython-doc dh-make gcc-7-doc libstdc++6-7-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan4-dbg
liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg
libquadmath0-dbg gettext-doc libasprintf-dev libgettextpo-dev groff
libboost1.62-doc gccxml libboost-atomic1.62-dev libboost-chrono1.62-dev
libboost-context1.62-dev libboost-coroutine1.62-dev
libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
libboost-filesystem1.62-dev libboost-graph1.62-dev
libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev
libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev
libboost-mpi1.62-dev libboost-mpi-python1.62-dev
libboost-program-options1.62-dev libboost-random1.62-dev
libboost-regex1.62-dev libboost-serialization1.62-dev
libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev
libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev
libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev
libhdf5-doc libstdc++-7-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc less www-browser libmail-box-perl python-doc python-tk
python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk
python3-venv python3.5-venv python3.5-doc python3.6-venv python3.6-doc
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cython cython3
debhelper dh-autoreconf dh-python dh-strip-nondeterminism file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libboost-python-dev libboost-python1.62-dev
libboost-python1.62.0 libboost1.62-dev libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0
libhdf5-100 libhdf5-cpp-100 libhdf5-dev libicu57 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev
libpython3.5-minimal libpython3.5-stdlib libpython3.6 libpython3.6-dev
libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libsz2 libtimedate-perl
libtool libxml2 m4 man-db mime-support po-debconf python python-all
python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2.7 python2.7-dev python2.7-minimal python3
python3-all python3-all-dev python3-dev python3-minimal
python3-pkg-resources python3-setuptools python3.5 python3.5-dev
python3.5-minimal python3.6 python3.6-dev python3.6-minimal
sbuild-build-depends-fast5-dummy zlib1g-dev
The following packages will be upgraded:
cpp-7 g++-7 gcc-7 gcc-7-base libasan4 libatomic1 libcc1-0 libcilkrts5
libgcc-7-dev libgcc1 libgomp1 libstdc++-7-dev libstdc++6 libubsan0
14 upgraded, 94 newly installed, 0 to remove and 53 not upgraded.
Need to get 211 MB of archives.
After this operation, 391 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-KWO0hW/apt_archive ./ sbuild-build-depends-fast5-dummy 0.invalid.0 [826 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 7.2.0-5 [63.2 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.2.0-5 [181 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:7.2.0-5 [38.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 7.2.0-5 [6728 B]
Get:6 http://172.17.0.1/private buster-staging/main armhf libasan4 armhf 7.2.0-5 [298 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.2.0-5 [102 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libcilkrts5 armhf 7.2.0-5 [35.3 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf cpp-7 armhf 7.2.0-5 [29.0 MB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 7.2.0-5 [30.2 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-7 armhf 7.2.0-5 [31.0 MB]
Get:12 http://172.17.0.1/private buster-staging/main armhf gcc-7 armhf 7.2.0-5 [28.2 MB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-7-dev armhf 7.2.0-5 [665 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libstdc++-7-dev armhf 7.2.0-5 [1497 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 7.2.0-5 [335 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.13-2 [389 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.13-2 [1178 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.13-2 [40.5 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.13-2 [1827 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.13-2 [285 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.13-2 [20.0 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.13-2 [154 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libpython3.5-minimal armhf 3.5.4-2 [572 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf python3.5-minimal armhf 3.5.4-2 [1448 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.5.3-3 [35.4 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libpython3.5-stdlib armhf 3.5.4-2 [2097 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf python3.5 armhf 3.5.4-2 [241 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.5.3-3 [18.8 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf dh-python all 2.20170125 [86.8 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.5.3-3 [21.8 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.2-2 [574 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.2-2 [1213 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-4 [609 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf cython armhf 0.25.2-2 [1699 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf cython3 armhf 0.25.2-2 [2419 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.0-1 [2650 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.8 [973 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf hdf5-helpers armhf 1.10.0-patch1+docs-4 [36.0 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libaec0 armhf 0.3.2-2 [19.3 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4 [7009 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libboost-python1.62.0 armhf 1.62.0+dfsg-4 [120 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.13-2 [916 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.3-1 [120 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.13-2 [27.6 MB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.13-2 [20.0 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.13-2 [276 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.13-2 [1130 B]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpython3.5 armhf 3.5.4-2 [1174 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpython3.5-dev armhf 3.5.4-2 [37.0 MB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.5.3-3 [18.9 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf python3.5-dev armhf 3.5.4-2 [430 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.5.3-3 [1158 B]
Get:82 http://172.17.0.1/private buster-staging/main armhf libboost-python1.62-dev armhf 1.62.0+dfsg-4 [156 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libboost-python-dev armhf 1.62.0.1+b6 [4082 B]
Get:84 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.2.0-5 [188 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libsz2 armhf 0.3.2-2 [6080 B]
Get:86 http://172.17.0.1/private buster-staging/main armhf libhdf5-100 armhf 1.10.0-patch1+docs-4 [1220 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libhdf5-cpp-100 armhf 1.10.0-patch1+docs-4 [118 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2 [110 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2 [178 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libaec-dev armhf 0.3.2-2 [17.3 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libhdf5-dev armhf 1.10.0-patch1+docs-4 [2109 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.13-2 [958 B]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.2-2 [2045 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.2-2 [1212 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.2-2 [2221 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.5.3-3 [970 B]
Get:99 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.13-2 [940 B]
Get:100 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.13-2 [962 B]
Get:101 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 36.2.7-2 [169 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 36.2.7-2 [302 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.2-2 [211 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.5.3-3 [944 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.2-2 [501 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.5.3-3 [972 B]
Get:107 http://172.17.0.1/private buster-staging/main armhf python3-pkg-resources all 36.2.7-2 [140 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf python3-setuptools all 36.2.7-2 [220 kB]
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Preparing to unpack .../68-python3-all-dev_3.5.3-3_armhf.deb ...
Unpacking python3-all-dev (3.5.3-3) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../69-python3-pkg-resources_36.2.7-2_all.deb ...
Unpacking python3-pkg-resources (36.2.7-2) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../70-python3-setuptools_36.2.7-2_all.deb ...
Unpacking python3-setuptools (36.2.7-2) ...
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Preparing to unpack .../71-sbuild-build-depends-fast5-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-fast5-dummy (0.invalid.0) ...
Setting up libgomp1:armhf (7.2.0-5) ...
Setting up libatomic1:armhf (7.2.0-5) ...
Setting up libaec0:armhf (0.3.2-2) ...
Setting up libcc1-0:armhf (7.2.0-5) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up mime-support (3.60) ...
Setting up libasan4:armhf (7.2.0-5) ...
Setting up libgfortran4:armhf (7.2.0-5) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up libcilkrts5:armhf (7.2.0-5) ...
Setting up libubsan0:armhf (7.2.0-5) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.54.0-1) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-6) ...
Setting up libbsd0:armhf (0.8.6-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-4) ...
Setting up libgcc-7-dev:armhf (7.2.0-5) ...
Setting up cpp-7 (7.2.0-5) ...
Setting up libmagic-mgc (1:5.32-1) ...
Setting up libmagic1:armhf (1:5.32-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Setting up libstdc++-7-dev:armhf (7.2.0-5) ...
Setting up libpython3.6-minimal:armhf (3.6.2-2) ...
Processing triggers for libc-bin (2.24-14) ...
Setting up autotools-dev (20161112.1) ...
Setting up libexpat1-dev:armhf (2.2.3-1) ...
Setting up libboost-python1.62.0 (1.62.0+dfsg-4) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up hdf5-helpers (1.10.0-patch1+docs-4) ...
Setting up libpython2.7-stdlib:armhf (2.7.13-2) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up libmpdec2:armhf (2.4.2-1) ...
Setting up libsz2:armhf (0.3.2-2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.038-1) ...
Setting up libpython3.6-stdlib:armhf (3.6.2-2) ...
Setting up libhdf5-100:armhf (1.10.0-patch1+docs-4) ...
Setting up libboost1.62-dev:armhf (1.62.0+dfsg-4) ...
Setting up gcc-7 (7.2.0-5) ...
Setting up gettext (0.19.8.1-4) ...
Setting up g++-7 (7.2.0-5) ...
Setting up libpython3.5-stdlib:armhf (3.5.4-2) ...
Setting up libaec-dev:armhf (0.3.2-2) ...
Setting up python3.6-minimal (3.6.2-2) ...
Setting up python2.7 (2.7.13-2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-1) ...
Setting up libpython-stdlib:armhf (2.7.13-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up libpython2.7:armhf (2.7.13-2) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-dev:armhf (2.7.13-2) ...
Setting up python2.7-dev (2.7.13-2) ...
Setting up python (2.7.13-2) ...
Setting up libpython3.6:armhf (3.6.2-2) ...
Setting up libtool (2.4.6-2) ...
Setting up python3.5 (3.5.4-2) ...
Setting up libpython3-stdlib:armhf (3.5.3-3) ...
Setting up libpython-dev:armhf (2.7.13-2) ...
Setting up libhdf5-cpp-100:armhf (1.10.0-patch1+docs-4) ...
Setting up python3.6 (3.6.2-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libpython3.5:armhf (3.5.4-2) ...
Setting up python-dev (2.7.13-2) ...
Setting up libpython-all-dev:armhf (2.7.13-2) ...
Setting up libhdf5-dev (1.10.0-patch1+docs-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up python-pkg-resources (36.2.7-2) ...
Setting up libpython3.6-dev:armhf (3.6.2-2) ...
Setting up libpython3.5-dev:armhf (3.5.4-2) ...
Setting up cython (0.25.2-2) ...
Setting up python3.6-dev (3.6.2-2) ...
Setting up python3.5-dev (3.5.4-2) ...
Setting up python-all (2.7.13-2) ...
Setting up libpython3-dev:armhf (3.5.3-3) ...
Setting up python-setuptools (36.2.7-2) ...
Setting up python-all-dev (2.7.13-2) ...
Setting up libpython3-all-dev:armhf (3.5.3-3) ...
Setting up dh-autoreconf (14) ...
Setting up python3 (3.5.3-3) ...
Setting up python3-dev (3.5.3-3) ...
Setting up python3-pkg-resources (36.2.7-2) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up python3-all (3.5.3-3) ...
Setting up cython3 (0.25.2-2) ...
Setting up python3-setuptools (36.2.7-2) ...
Setting up dh-python (2.20170125) ...
Setting up debhelper (10.8) ...
Setting up python3-all-dev (3.5.3-3) ...
Setting up libboost-python1.62-dev (1.62.0+dfsg-4) ...
Setting up libboost-python-dev (1.62.0.1+b6) ...
Setting up sbuild-build-depends-fast5-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-14) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29-4+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-5 gcc-7_7.2.0-5 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.116 apt_1.5~rc1 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4+rpi1 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.1.0-2 cpp-7_7.2.0-5 cython_0.25.2-2 cython3_0.25.2-2 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.8 debianutils_4.8.2 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dirmngr_2.1.23-2 dmsetup_2:1.02.142-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-7_7.2.0-5 gcc_4:7.1.0-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-5 gcc-7-base_7.2.0-5 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.1.23-2 gnupg-agent_2.1.23-2 gnupg-l10n_2.1.23-2 gnupg-utils_2.1.23-2 gpg_2.1.23-2 gpg-agent_2.1.23-2 gpg-wks-client_2.1.23-2 gpg-wks-server_2.1.23-2 gpgconf_2.1.23-2 gpgsm_2.1.23-2 gpgv_2.1.23-2 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hdf5-helpers_1.10.0-patch1+docs-4 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libaec-dev_0.3.2-2 libaec0_0.3.2-2 libapparmor1_2.11.0-10 libapt-pkg5.0_1.5~rc1 libarchive-zip-perl_1.59-1 libasan4_7.2.0-5 libassuan0_2.4.3-3 libatomic1_7.2.0-5 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libblkid1_2.29.2-2+rpi1 libboost-python-dev_1.62.0.1+b6 libboost-python1.62-dev_1.62.0+dfsg-4 libboost-python1.62.0_1.62.0+dfsg-4 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.2.0-5 libcilkrts5_7.2.0-5 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libdb5.3_5.3.28-13+rpi1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libexpat1_2.2.3-1 libexpat1-dev_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-7-dev_7.2.0-5 libgcc1_1:7.2.0-5 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libgfortran4_7.2.0-5 libglib2.0-0_2.54.0-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-5 libgpg-error0_1.27-3 libhdf5-100_1.10.0-patch1+docs-4 libhdf5-cpp-100_1.10.0-patch1+docs-4 libhdf5-dev_1.10.0-patch1+docs-4 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-3 libip4tc0_1.6.1-2 libisl15_0.18-1 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2 libjpeg62-turbo-dev_1:1.5.2-2 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1+b2 libmpdec2_2.4.2-1 libmpfr4_3.1.6~rc1-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libplymouth4_0.9.2-5 libpng16-16_1.6.32-1 libprocps6_2:3.3.12-3 libpython-all-dev_2.7.13-2 libpython-dev_2.7.13-2 libpython-stdlib_2.7.13-2 libpython2.7_2.7.13-2 libpython2.7-dev_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libpython3-all-dev_3.5.3-3 libpython3-dev_3.5.3-3 libpython3-stdlib_3.5.3-3 libpython3.5_3.5.4-2 libpython3.5-dev_3.5.4-2 libpython3.5-minimal_3.5.4-2 libpython3.5-stdlib_3.5.4-2 libpython3.6_3.6.2-2 libpython3.6-dev_3.6.2-2 libpython3.6-minimal_3.6.2-2 libpython3.6-stdlib_3.6.2-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.6-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 libsystemd0_234-2.3 libsz2_0.3.2-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.2.0-5 libudev1_234-2.3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libxml2_2.9.4+dfsg1-4 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-5 pinentry-curses_1.0.0-2 plymouth_0.9.2-5 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.13-2 python-all_2.7.13-2 python-all-dev_2.7.13-2 python-dev_2.7.13-2 python-minimal_2.7.13-2 python-pkg-resources_36.2.7-2 python-setuptools_36.2.7-2 python2.7_2.7.13-2 python2.7-dev_2.7.13-2 python2.7-minimal_2.7.13-2 python3_3.5.3-3 python3-all_3.5.3-3 python3-all-dev_3.5.3-3 python3-dev_3.5.3-3 python3-minimal_3.5.3-3 python3-pkg-resources_36.2.7-2 python3-setuptools_36.2.7-2 python3.5_3.5.4-2 python3.5-dev_3.5.4-2 python3.5-minimal_3.5.4-2 python3.6_3.6.2-2 python3.6-dev_3.6.2-2 python3.6-minimal_3.6.2-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fast5-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2.3 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_234-2.3 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Sep 17 15:55:24 2017 UTC
gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv: issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./fast5_0.6.2-6.dsc
dpkg-source: info: extracting fast5 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking fast5_0.6.2.orig.tar.gz
dpkg-source: info: unpacking fast5_0.6.2-6.debian.tar.xz
dpkg-source: info: applying rpath.patch
dpkg-source: info: applying functional.patch
dpkg-source: info: applying hdf5include.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-11d52245-3691-4816-ac53-7c156ff2d278
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package fast5
dpkg-buildpackage: info: source version 0.6.2-6
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build fast5-0.6.2
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from fast5-0.6.2/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp
fakeroot debian/rules clean
dh clean --with python2,python3 --buildsystem=pybuild \
--sourcedirectory=python
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
rm -f -r src/fast5
dh_auto_clean
I: pybuild base:184: python2.7 setup.py clean
Compiling fast5/fast5.pyx because it changed.
[1/1] Cythonizing fast5/fast5.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
I: pybuild base:184: python3.6 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.6/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.6' does not exist -- can't clean it
I: pybuild base:184: python3.5 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.5' does not exist -- can't clean it
rm -rf python/fast5/fast5.cpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python
debian/rules build-arch
dh build-arch --with python2,python3 --buildsystem=pybuild \
--sourcedirectory=python
dh_update_autotools_config -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_auto_configure -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:184: python2.7 setup.py config
Compiling fast5/fast5.pyx because it changed.
[1/1] Cythonizing fast5/fast5.pyx
running config
I: pybuild base:184: python3.6 setup.py config
running config
I: pybuild base:184: python3.5 setup.py config
running config
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p src/fast5
ln -sf ../hdf5_tools.hpp src/fast5/hdf5_tools.hpp
dh_auto_build
I: pybuild base:184: /usr/bin/python setup.py build
running build
running build_ext
building 'fast5' extension
creating build
creating build/temp.linux-armhf-2.7
creating build/temp.linux-armhf-2.7/fast5
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../src -I/usr/include/python2.7 -c fast5/fast5.cpp -o build/temp.linux-armhf-2.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_11File_Packer_1__init__(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:8348:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
fast5/fast5.cpp:8349:9: note: here
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
^~~~
fast5/fast5.cpp:8349:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
fast5/fast5.cpp:8350:9: note: here
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~
fast5/fast5.cpp:8350:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
fast5/fast5.cpp:8351:9: note: here
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~
fast5/fast5.cpp:8351:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8352:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:8362:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8363:9: note: here
case 1:
^~~~
fast5/fast5.cpp:8367:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8368:9: note: here
case 2:
^~~~
fast5/fast5.cpp:8372:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8373:9: note: here
case 3:
^~~~
fast5/fast5.cpp:8377:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8378:9: note: here
case 4:
^~~~
fast5/fast5.cpp:8389:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
fast5/fast5.cpp:8390:9: note: here
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
^~~~
fast5/fast5.cpp:8390:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
fast5/fast5.cpp:8391:9: note: here
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~
fast5/fast5.cpp:8391:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
fast5/fast5.cpp:8392:9: note: here
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~
fast5/fast5.cpp:8392:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8393:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_11File_Packer_11run(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:8779:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8780:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:8787:90: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ifn)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:8789:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_4File_1__init__(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1373:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1374:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1384:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:1385:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1396:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1397:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_113get_basecall_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7744:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7745:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7752:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7754:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7765:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7766:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_111get_basecall_events_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7580:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7581:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7588:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7590:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7601:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7602:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_109have_basecall_events_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7463:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7464:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7471:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7473:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_107have_basecall_events_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7347:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7348:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7355:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7357:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_105have_basecall_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7197:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7198:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7205:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7207:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7218:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7219:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_103get_basecall_model(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7033:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7034:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7041:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7043:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7054:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7055:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_101get_basecall_model_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6869:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6870:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6877:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6879:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6890:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6891:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_99get_basecall_model_file(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6705:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6706:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6713:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6715:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6726:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6727:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_97have_basecall_model(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6554:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6555:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6562:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6564:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6575:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6576:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_95get_basecall_seq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6390:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6391:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6398:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6400:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6411:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6412:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_93have_basecall_seq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6239:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6240:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6247:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6249:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6260:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6261:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_91get_basecall_fastq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6075:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6076:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6083:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6085:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6096:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6097:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_89have_basecall_fastq_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5958:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5959:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5966:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5968:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_87have_basecall_fastq_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5842:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5843:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5850:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5852:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_85have_basecall_fastq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5692:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5693:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5700:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5702:9: note: here
case 1:
^~~~
fast5/fast5.cpp:5713:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5714:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_69have_basecall_strand_group(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5072:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5073:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5080:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5082:9: note: here
case 1:
^~~~
fast5/fast5.cpp:5093:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5094:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_61get_eventdetection_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4603:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4604:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4614:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:4615:9: note: here
case 1:
^~~~
fast5/fast5.cpp:4626:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4627:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_59get_eventdetection_events_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4396:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4397:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4407:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:4408:9: note: here
case 1:
^~~~
fast5/fast5.cpp:4419:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4420:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_57have_eventdetection_events_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4278:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4279:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4286:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:4288:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_55have_eventdetection_events_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4162:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4163:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4170:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:4172:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_53have_eventdetection_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:3976:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:3977:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:3987:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:3988:9: note: here
case 1:
^~~~
fast5/fast5.cpp:3999:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4000:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_11create(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1909:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1910:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1917:96: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:1919:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1930:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1931:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_9open(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1746:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1747:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1754:96: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:1756:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1767:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1768:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
In file included from /usr/include/c++/7/vector:69:0,
from fast5/fast5.cpp:486:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from fast5/fast5.cpp:486:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector<fast5::EventDetection_Event>&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void fast5::File_Packer::pack_ed(const fast5::File&, fast5::File&, fast5::File_Packer::Counts&) const’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-9xgeTe/python2.7-2.7.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-2.7/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/fast5.so
running build_scripts
creating build/scripts-2.7
copying and adjusting bin/f5ls -> build/scripts-2.7
copying and adjusting bin/f5pack -> build/scripts-2.7
changing mode of build/scripts-2.7/f5ls from 664 to 775
changing mode of build/scripts-2.7/f5pack from 664 to 775
I: pybuild base:184: /usr/bin/python3.6 setup.py build
running build
running build_ext
building 'fast5' extension
creating build/temp.linux-armhf-3.6
creating build/temp.linux-armhf-3.6/fast5
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../src -I/usr/include/python3.6m -c fast5/fast5.cpp -o build/temp.linux-armhf-3.6/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_11File_Packer_1__init__(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:8348:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
fast5/fast5.cpp:8349:9: note: here
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
^~~~
fast5/fast5.cpp:8349:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
fast5/fast5.cpp:8350:9: note: here
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~
fast5/fast5.cpp:8350:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
fast5/fast5.cpp:8351:9: note: here
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~
fast5/fast5.cpp:8351:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8352:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:8362:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8363:9: note: here
case 1:
^~~~
fast5/fast5.cpp:8367:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8368:9: note: here
case 2:
^~~~
fast5/fast5.cpp:8372:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8373:9: note: here
case 3:
^~~~
fast5/fast5.cpp:8377:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8378:9: note: here
case 4:
^~~~
fast5/fast5.cpp:8389:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
fast5/fast5.cpp:8390:9: note: here
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
^~~~
fast5/fast5.cpp:8390:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
fast5/fast5.cpp:8391:9: note: here
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~
fast5/fast5.cpp:8391:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
fast5/fast5.cpp:8392:9: note: here
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~
fast5/fast5.cpp:8392:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8393:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_11File_Packer_11run(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:8779:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8780:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:8787:90: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ifn)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:8789:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_4File_1__init__(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1373:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1374:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1384:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:1385:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1396:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1397:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_113get_basecall_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7744:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7745:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7752:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7754:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7765:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7766:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_111get_basecall_events_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7580:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7581:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7588:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7590:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7601:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7602:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_109have_basecall_events_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7463:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7464:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7471:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7473:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_107have_basecall_events_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7347:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7348:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7355:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7357:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_105have_basecall_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7197:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7198:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7205:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7207:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7218:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7219:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_103get_basecall_model(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7033:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7034:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7041:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7043:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7054:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7055:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_101get_basecall_model_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6869:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6870:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6877:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6879:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6890:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6891:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_99get_basecall_model_file(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6705:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6706:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6713:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6715:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6726:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6727:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_97have_basecall_model(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6554:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6555:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6562:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6564:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6575:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6576:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_95get_basecall_seq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6390:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6391:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6398:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6400:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6411:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6412:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_93have_basecall_seq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6239:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6240:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6247:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6249:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6260:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6261:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_91get_basecall_fastq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6075:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6076:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6083:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6085:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6096:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6097:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_89have_basecall_fastq_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5958:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5959:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5966:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5968:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_87have_basecall_fastq_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5842:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5843:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5850:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5852:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_85have_basecall_fastq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5692:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5693:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5700:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5702:9: note: here
case 1:
^~~~
fast5/fast5.cpp:5713:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5714:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_69have_basecall_strand_group(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5072:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5073:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5080:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5082:9: note: here
case 1:
^~~~
fast5/fast5.cpp:5093:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5094:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_61get_eventdetection_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4603:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4604:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4614:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:4615:9: note: here
case 1:
^~~~
fast5/fast5.cpp:4626:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4627:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_59get_eventdetection_events_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4396:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4397:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4407:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:4408:9: note: here
case 1:
^~~~
fast5/fast5.cpp:4419:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4420:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_57have_eventdetection_events_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4278:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4279:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4286:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:4288:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_55have_eventdetection_events_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4162:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4163:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4170:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:4172:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_53have_eventdetection_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:3976:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:3977:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:3987:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:3988:9: note: here
case 1:
^~~~
fast5/fast5.cpp:3999:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4000:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_11create(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1909:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1910:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1917:96: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:1919:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1930:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1931:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_9open(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1746:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1747:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1754:96: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:1756:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1767:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1768:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
In file included from /usr/include/c++/7/vector:69:0,
from fast5/fast5.cpp:486:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from fast5/fast5.cpp:486:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector<fast5::EventDetection_Event>&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void fast5::File_Packer::pack_ed(const fast5::File&, fast5::File&, fast5::File_Packer::Counts&) const’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.6/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.6/build/fast5.cpython-36m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.6
copying and adjusting bin/f5ls -> build/scripts-3.6
copying and adjusting bin/f5pack -> build/scripts-3.6
changing mode of build/scripts-3.6/f5ls from 664 to 775
changing mode of build/scripts-3.6/f5pack from 664 to 775
I: pybuild base:184: /usr/bin/python3 setup.py build
running build
running build_ext
building 'fast5' extension
creating build/temp.linux-armhf-3.5
creating build/temp.linux-armhf-3.5/fast5
arm-linux-gnueabihf-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../src -I/usr/include/python3.5m -c fast5/fast5.cpp -o build/temp.linux-armhf-3.5/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_11File_Packer_1__init__(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:8348:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
fast5/fast5.cpp:8349:9: note: here
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
^~~~
fast5/fast5.cpp:8349:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
fast5/fast5.cpp:8350:9: note: here
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~
fast5/fast5.cpp:8350:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
fast5/fast5.cpp:8351:9: note: here
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~
fast5/fast5.cpp:8351:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8352:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:8362:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8363:9: note: here
case 1:
^~~~
fast5/fast5.cpp:8367:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8368:9: note: here
case 2:
^~~~
fast5/fast5.cpp:8372:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8373:9: note: here
case 3:
^~~~
fast5/fast5.cpp:8377:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:8378:9: note: here
case 4:
^~~~
fast5/fast5.cpp:8389:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
fast5/fast5.cpp:8390:9: note: here
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
^~~~
fast5/fast5.cpp:8390:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
fast5/fast5.cpp:8391:9: note: here
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
^~~~
fast5/fast5.cpp:8391:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
fast5/fast5.cpp:8392:9: note: here
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
^~~~
fast5/fast5.cpp:8392:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8393:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_11File_Packer_11run(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:8779:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:8780:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:8787:90: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ifn)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:8789:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘int __pyx_pw_5fast5_4File_1__init__(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1373:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1374:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1384:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:1385:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1396:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1397:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_113get_basecall_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7744:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7745:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7752:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7754:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7765:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7766:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_111get_basecall_events_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7580:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7581:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7588:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7590:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7601:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7602:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_109have_basecall_events_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7463:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7464:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7471:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7473:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_107have_basecall_events_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7347:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7348:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7355:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7357:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_105have_basecall_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7197:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7198:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7205:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7207:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7218:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7219:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_103get_basecall_model(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:7033:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7034:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:7041:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:7043:9: note: here
case 1:
^~~~
fast5/fast5.cpp:7054:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:7055:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_101get_basecall_model_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6869:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6870:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6877:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6879:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6890:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6891:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_99get_basecall_model_file(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6705:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6706:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6713:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6715:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6726:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6727:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_97have_basecall_model(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6554:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6555:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6562:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6564:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6575:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6576:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_95get_basecall_seq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6390:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6391:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6398:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6400:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6411:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6412:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_93have_basecall_seq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6239:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6240:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6247:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6249:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6260:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6261:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_91get_basecall_fastq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:6075:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6076:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:6083:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:6085:9: note: here
case 1:
^~~~
fast5/fast5.cpp:6096:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:6097:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_89have_basecall_fastq_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5958:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5959:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5966:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5968:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_87have_basecall_fastq_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5842:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5843:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5850:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5852:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_85have_basecall_fastq(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5692:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5693:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5700:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5702:9: note: here
case 1:
^~~~
fast5/fast5.cpp:5713:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5714:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_69have_basecall_strand_group(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:5072:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5073:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:5080:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_st)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:5082:9: note: here
case 1:
^~~~
fast5/fast5.cpp:5093:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:5094:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_61get_eventdetection_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4603:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4604:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4614:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:4615:9: note: here
case 1:
^~~~
fast5/fast5.cpp:4626:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4627:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_59get_eventdetection_events_params(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4396:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4397:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4407:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:4408:9: note: here
case 1:
^~~~
fast5/fast5.cpp:4419:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4420:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_57have_eventdetection_events_pack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4278:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4279:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4286:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:4288:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_55have_eventdetection_events_unpack(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:4162:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4163:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:4170:89: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_gr)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:4172:9: note: here
case 1:
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_53have_eventdetection_events(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:3976:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:3977:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:3987:9: warning: this statement may fall through [-Wimplicit-fallthrough=]
}
^
fast5/fast5.cpp:3988:9: note: here
case 1:
^~~~
fast5/fast5.cpp:3999:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:4000:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_11create(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1909:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1910:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1917:96: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:1919:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1930:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1931:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp: In function ‘PyObject* __pyx_pw_5fast5_4File_9open(PyObject*, PyObject*, PyObject*)’:
fast5/fast5.cpp:1746:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1747:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
fast5/fast5.cpp:1754:96: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_file_name)) != 0)) kw_args--;
~~~~~~~^~
fast5/fast5.cpp:1756:9: note: here
case 1:
^~~~
fast5/fast5.cpp:1767:28: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
fast5/fast5.cpp:1768:9: note: here
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
^~~~
In file included from /usr/include/c++/7/vector:69:0,
from fast5/fast5.cpp:486:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from fast5/fast5.cpp:486:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector<_Tp> fast5::Huffman_Packer::decode(const Code_Type&, const Code_Params_Type&) const [with Int_Type = long long int]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In static member function ‘static fast5::Basecall_Events_Pack fast5::File::pack_ev(const Basecall_Events_Dataset&, const fast5::Basecall_Group_Description&, const string&, const std::vector<fast5::EventDetection_Event>&, const string&, const fast5::Channel_Id_Params&, double, unsigned int)’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void fast5::File_Packer::pack_ed(const fast5::File&, fast5::File&, fast5::File_Packer::Counts&) const’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.5/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -o /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/fast5.cpython-35m-arm-linux-gnueabihf.so
running build_scripts
creating build/scripts-3.5
copying and adjusting bin/f5ls -> build/scripts-3.5
copying and adjusting bin/f5pack -> build/scripts-3.5
changing mode of build/scripts-3.5/f5ls from 664 to 775
changing mode of build/scripts-3.5/f5pack from 664 to 775
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && /usr/bin/make CPPFLAGS=-I/<<PKGBUILDDIR>>/src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -I/<<PKGBUILDDIR>>/src -o f5ls f5ls.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/7/vector:64:0,
from fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = std::allocator<long long int>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = std::allocator<fast5::EventDetection_Event>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = std::allocator<fast5::Basecall_Event>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = std::allocator<fast5::Basecall_Alignment_Entry>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*; _Tp = long long int]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = std::allocator<fast5::Basecall_Model_State>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/ios:40,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<long long int*>; _OI = long long int*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::EventDetection_Event*>; _OI = fast5::EventDetection_Event*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Event*>; _OI = fast5::Basecall_Event*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _OI = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from fast5.hpp:19,
from f5ls.cpp:12:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/ios:40,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = long long int*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/ios:40,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Model_State*>; _OI = fast5::Basecall_Model_State*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/ios:40,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from f5ls.cpp:9:
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -I/<<PKGBUILDDIR>>/src -o f5ls-full f5ls-full.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/7/vector:64:0,
from fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/7/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >’ changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long int&}; _Tp = long long int; _Alloc = std::allocator<long long int>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = std::allocator<long long int>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = std::allocator<fast5::EventDetection_Event>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = std::allocator<fast5::Basecall_Event>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = std::allocator<fast5::Basecall_Alignment_Entry>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*; _Tp = long long int]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = std::allocator<fast5::Basecall_Model_State>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<long long int*>; _ForwardIterator = long long int*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::EventDetection_Event*>; _ForwardIterator = fast5::EventDetection_Event*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Event*>; _ForwardIterator = fast5::Basecall_Event*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/ios:40,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<long long int*>; _OI = long long int*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::EventDetection_Event*>; _OI = fast5::EventDetection_Event*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Event*>; _OI = fast5::Basecall_Event*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Alignment_Entry*>; _OI = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from fast5.hpp:19,
from f5ls-full.cpp:12:
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<fast5::Basecall_Model_State*>; _ForwardIterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:99:9: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:101:53: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
{ return std::copy(__first, __last, __result); }
^
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/ios:40,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = long long int*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<long long int*>’ changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::EventDetection_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Event*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Alignment_Entry*>’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/char_traits.h:39:0,
from /usr/include/c++/7/ios:40,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/7/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = std::move_iterator<fast5::Basecall_Model_State*>; _OI = fast5::Basecall_Model_State*]’:
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
copy(_II __first, _II __last, _OI __result)
^~~~
/usr/include/c++/7/bits/stl_algobase.h:446:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
In file included from /usr/include/c++/7/bits/stl_algobase.h:67:0,
from /usr/include/c++/7/bits/char_traits.h:39,
from /usr/include/c++/7/ios:40,
from /usr/include/c++/7/ostream:38,
from /usr/include/c++/7/iostream:39,
from f5ls-full.cpp:9:
/usr/include/c++/7/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(std::move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’:
/usr/include/c++/7/bits/stl_iterator.h:1241:5: note: parameter passing for argument of type ‘std::move_iterator<fast5::Basecall_Model_State*>’ changed in GCC 7.1
__miter_base(move_iterator<_Iterator> __it)
^~~~~~~~~~~~
g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -I/<<PKGBUILDDIR>>/src -o hdf5-mod hdf5-mod.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/7/vector:69:0,
from hdf5_tools.hpp:20,
from hdf5-mod.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, const hdf5_tools::Compound_Map*&, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from hdf5_tools.hpp:20,
from hdf5-mod.cpp:12:
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -I/<<PKGBUILDDIR>>/src -o f5-mod f5-mod.cpp -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl
In file included from /usr/include/c++/7/vector:69:0,
from fast5.hpp:19,
from f5-mod.cpp:12:
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >’ changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, long long int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&, unsigned int, unsigned int}; _Tp = hdf5_tools::detail::Compound_Member_Description; _Alloc = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector<hdf5_tools::detail::Compound_Member_Description>::iterator {aka __gnu_cxx::__normal_iterator<hdf5_tools::detail::Compound_Member_Description*, std::vector<hdf5_tools::detail::Compound_Member_Description> >}’ changed in GCC 7.1
In file included from /usr/include/c++/7/vector:63:0,
from fast5.hpp:19,
from f5-mod.cpp:12:
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = std::allocator<hdf5_tools::detail::Compound_Member_Description>]’:
/usr/include/c++/7/bits/stl_uninitialized.h:312:69: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’:
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninitialized_copy_a(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:287:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:289:63: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
{ return std::uninitialized_copy(__first, __last, __result); }
^
/usr/include/c++/7/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’:
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
uninitialized_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:115:5: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
/usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(__first, __last, __result);
^
/usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’:
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
__uninit_copy(_InputIterator __first, _InputIterator __last,
^~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘std::move_iterator<hdf5_tools::detail::Compound_Member_Description*>’ changed in GCC 7.1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
fakeroot debian/rules binary-arch
dh binary-arch --with python2,python3 --buildsystem=pybuild \
--sourcedirectory=python
dh_testroot -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_prep -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_auto_install -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: pybuild base:184: /usr/bin/python setup.py install --root /<<PKGBUILDDIR>>/debian/python-fast5
running install
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib/python2.7/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_2.7/build/fast5.so -> /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib/python2.7/dist-packages
running install_egg_info
running egg_info
creating fast5.egg-info
writing fast5.egg-info/PKG-INFO
writing top-level names to fast5.egg-info/top_level.txt
writing dependency_links to fast5.egg-info/dependency_links.txt
writing manifest file 'fast5.egg-info/SOURCES.txt'
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python-fast5/usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin
copying build/scripts-2.7/f5pack -> /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin
copying build/scripts-2.7/f5ls -> /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin/f5pack to 775
changing mode of /<<PKGBUILDDIR>>/debian/python-fast5/usr/bin/f5ls to 775
I: pybuild base:184: /usr/bin/python3.6 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-fast5
running install
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.6
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.6/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.6/build/fast5.cpython-36m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.6/dist-packages
running install_egg_info
running egg_info
writing fast5.egg-info/PKG-INFO
writing dependency_links to fast5.egg-info/dependency_links.txt
writing top-level names to fast5.egg-info/top_level.txt
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.6/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.6/f5pack -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.6/f5ls -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5pack to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5ls to 775
I: pybuild base:184: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-fast5
running install
running build
running build_ext
running build_scripts
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.5
creating /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.5/dist-packages
copying /<<PKGBUILDDIR>>/.pybuild/pythonX.Y_3.5/build/fast5.cpython-35m-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.5/dist-packages
running install_egg_info
running egg_info
writing top-level names to fast5.egg-info/top_level.txt
writing fast5.egg-info/PKG-INFO
writing dependency_links to fast5.egg-info/dependency_links.txt
reading manifest file 'fast5.egg-info/SOURCES.txt'
writing manifest file 'fast5.egg-info/SOURCES.txt'
Copying fast5.egg-info to /<<PKGBUILDDIR>>/debian/python3-fast5/usr/lib/python3.5/dist-packages/fast5-0.6.2.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.5/f5pack -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
copying build/scripts-3.5/f5ls -> /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5pack to 775
changing mode of /<<PKGBUILDDIR>>/debian/python3-fast5/usr/bin/f5ls to 775
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mkdir -p debian/python-fast5-bin/usr/bin/
mkdir -p debian/python3-fast5-bin/usr/bin/
mv debian/python-fast5/usr/bin/* debian/python-fast5-bin/usr/bin/
mv debian/python3-fast5/usr/bin/* debian/python3-fast5-bin/usr/bin/
rm -rf debian/python-fast5/usr/bin/ debian/python3-fast5/usr/bin/
if [ -e debian/libfast5-dev/usr/include/fast5.hpp ] ; then \
sed -i s'%"hdf5_tools.hpp"%<fast5/hdf5_tools.hpp>%' debian/libfast5-dev/usr/include/fast5.hpp ; \
sed -i s'%"fast5_version.hpp"%<fast5/fast5_version.hpp>%' debian/libfast5-dev/usr/include/fast5.hpp ; \
sed -i s'%"logger.hpp"%<fast5/logger.hpp>%' debian/libfast5-dev/usr/include/fast5.hpp ; \
sed -i s'%"Huffman_Packer.hpp"%<fast5/Huffman_Packer.hpp>%' debian/libfast5-dev/usr/include/fast5.hpp ; \
sed -i s'%"Bit_Packer.hpp"%<fast5/Bit_Packer.hpp>%' debian/libfast5-dev/usr/include/fast5.hpp ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installchangelogs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installexamples -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_python2 -a -O--buildsystem=pybuild -O--sourcedirectory=python
I: dh_python2 fs:322: renaming fast5.so to fast5.arm-linux-gnueabihf.so
dh_python3 -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_perl -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_link -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_strip_nondeterminism -a -O--buildsystem=pybuild -O--sourcedirectory=python
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -X .cpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_missing -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_installdeb -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_gencontrol -a -O--buildsystem=pybuild -O--sourcedirectory=python
dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package python-fast5: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-fast5: unused substitution variable ${python3:Versions}
dh_md5sums -a -O--buildsystem=pybuild -O--sourcedirectory=python
dh_builddeb -a -O--buildsystem=pybuild -O--sourcedirectory=python
dpkg-deb: building package 'python-fast5' in '../python-fast5_0.6.2-6_armhf.deb'.
dpkg-deb: building package 'python-fast5-dbgsym' in '../python-fast5-dbgsym_0.6.2-6_armhf.deb'.
dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.2-6_armhf.deb'.
dpkg-deb: building package 'python3-fast5-dbgsym' in '../python3-fast5-dbgsym_0.6.2-6_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../fast5_0.6.2-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build fast5-0.6.2
dpkg-source: info: using options from fast5-0.6.2/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-09-23T17:43:38Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
fast5_0.6.2-6_armhf.changes:
----------------------------
Format: 1.8
Date: Sun, 17 Sep 2017 17:40:44 +0200
Source: fast5
Binary: libfast5-dev python-fast5 python-fast5-bin python3-fast5-bin python3-fast5
Architecture: armhf
Version: 0.6.2-6
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers
python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2
python-fast5-bin - executables of the Oxford Nanopore Fast5 library
python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3
python3-fast5-bin - executables of the Oxford Nanopore Fast5 library
Closes: 875991
Changes:
fast5 (0.6.2-6) unstable; urgency=medium
.
* Team upload
* Create yet another dir before moving files.
Now truly Closes: #875991
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python-fast5-dbgsym_0.6.2-6_armhf.deb
-------------------------------------
new debian package, version 2.0.
size 1423520 bytes: control archive=459 bytes.
384 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python-fast5-dbgsym
Source: fast5
Version: 0.6.2-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1553
Depends: python-fast5 (= 0.6.2-6)
Section: debug
Priority: optional
Description: debug symbols for python-fast5
Build-Ids: a5d59fdfc804cdb6e9fc20c42ef52934de6be97e
drwxr-xr-x root/root 0 2017-09-17 15:40 ./
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root 1579224 2017-09-17 15:40 ./usr/lib/debug/.build-id/a5/d59fdfc804cdb6e9fc20c42ef52934de6be97e.debug
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-09-17 15:40 ./usr/share/doc/python-fast5-dbgsym -> python-fast5
python-fast5_0.6.2-6_armhf.deb
------------------------------
new debian package, version 2.0.
size 176264 bytes: control archive=812 bytes.
625 bytes, 15 lines control
552 bytes, 6 lines md5sums
Package: python-fast5
Source: fast5
Version: 0.6.2-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 615
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libhdf5-100, libstdc++6 (>= 5.2), python (<< 2.8), python (>= 2.7~), python:any (<< 2.8), python:any (>= 2.7~)
Section: python
Priority: optional
Homepage: https://github.com/mateidavid/fast5
Description: library for reading Oxford Nanopore Fast5 files -- Python 2
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 2 library
drwxr-xr-x root/root 0 2017-09-17 15:40 ./
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/
-rw-r--r-- root/root 278 2017-09-17 15:40 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2017-09-17 15:40 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt
-rw-r--r-- root/root 6 2017-09-17 15:40 ./usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info/top_level.txt
-rw-r--r-- root/root 611548 2017-09-17 15:40 ./usr/lib/python2.7/dist-packages/fast5.arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/doc/python-fast5/
-rw-r--r-- root/root 1092 2017-09-17 15:40 ./usr/share/doc/python-fast5/changelog.Debian.gz
-rw-r--r-- root/root 1431 2017-09-15 11:45 ./usr/share/doc/python-fast5/copyright
python3-fast5-dbgsym_0.6.2-6_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 2711860 bytes: control archive=519 bytes.
428 bytes, 12 lines control
212 bytes, 2 lines md5sums
Package: python3-fast5-dbgsym
Source: fast5
Version: 0.6.2-6
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3111
Depends: python3-fast5 (= 0.6.2-6)
Section: debug
Priority: optional
Description: debug symbols for python3-fast5
Build-Ids: a60e4c8b4e9904eecbf359482c4683805a424f0c e1d74c2e88e628af0be1b3b7f5cd7dc97b74b08b
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drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/debug/.build-id/a6/
-rw-r--r-- root/root 1587112 2017-09-17 15:40 ./usr/lib/debug/.build-id/a6/0e4c8b4e9904eecbf359482c4683805a424f0c.debug
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/debug/.build-id/e1/
-rw-r--r-- root/root 1586640 2017-09-17 15:40 ./usr/lib/debug/.build-id/e1/d74c2e88e628af0be1b3b7f5cd7dc97b74b08b.debug
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-09-17 15:40 ./usr/share/doc/python3-fast5-dbgsym -> python3-fast5
python3-fast5_0.6.2-6_armhf.deb
-------------------------------
new debian package, version 2.0.
size 176882 bytes: control archive=838 bytes.
586 bytes, 15 lines control
663 bytes, 7 lines md5sums
Package: python3-fast5
Source: fast5
Version: 0.6.2-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1213
Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libhdf5-100, libstdc++6 (>= 5.2), python3 (<< 3.7), python3 (>= 3.5~)
Section: python
Priority: optional
Homepage: https://github.com/mateidavid/fast5
Description: library for reading Oxford Nanopore Fast5 files -- Python 3
A lightweight C++11 library to read raw signal data from Oxford
Nanopore's FAST5 files.
.
This package provides the Python 3 library
drwxr-xr-x root/root 0 2017-09-17 15:40 ./
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/python3/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/
-rw-r--r-- root/root 278 2017-09-17 15:40 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/PKG-INFO
-rw-r--r-- root/root 1 2017-09-17 15:40 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/dependency_links.txt
-rw-r--r-- root/root 6 2017-09-17 15:40 ./usr/lib/python3/dist-packages/fast5-0.6.2.egg-info/top_level.txt
-rw-r--r-- root/root 611612 2017-09-17 15:40 ./usr/lib/python3/dist-packages/fast5.cpython-35m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 611612 2017-09-17 15:40 ./usr/lib/python3/dist-packages/fast5.cpython-36m-arm-linux-gnueabihf.so
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-09-17 15:40 ./usr/share/doc/python3-fast5/
-rw-r--r-- root/root 1092 2017-09-17 15:40 ./usr/share/doc/python3-fast5/changelog.Debian.gz
-rw-r--r-- root/root 1431 2017-09-15 11:45 ./usr/share/doc/python3-fast5/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 78768
Build-Time: 463
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 623
Job: fast5_0.6.2-6
Machine Architecture: armhf
Package: fast5
Package-Time: 1103
Source-Version: 0.6.2-6
Space: 78768
Status: successful
Version: 0.6.2-6
--------------------------------------------------------------------------------
Finished at 2017-09-23T17:43:38Z
Build needed 00:18:23, 78768k disk space