examl →
3.0.22-4 →
armhf → 2024-02-06 05:23:54
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| examl 3.0.22-4 (armhf) Tue, 06 Feb 2024 05:05:21 +0000 |
+==============================================================================+
Package: examl
Version: 3.0.22-4
Source Version: 3.0.22-4
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-dc5e5e52-db57-4050-b827-592c0519f312' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.1 MB]
Fetched 29.5 MB in 29s (1002 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'examl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/examl.git
Please use:
git clone https://salsa.debian.org/med-team/examl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 971 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main examl 3.0.22-4 (dsc) [2008 B]
Get:2 http://172.17.4.1/private trixie-staging/main examl 3.0.22-4 (tar) [941 kB]
Get:3 http://172.17.4.1/private trixie-staging/main examl 3.0.22-4 (diff) [27.1 kB]
Fetched 971 kB in 0s (5221 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/examl-Mv84TK/examl-3.0.22' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/examl-Mv84TK' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-TCSNMe/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-TCSNMe/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-TCSNMe/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2944 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sensible-utils sgml-base
util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 15 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (21.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13121 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libopenmpi-dev, libsimde-dev, debhelper
Filtered Build-Depends: debhelper-compat (= 13), libopenmpi-dev, libsimde-dev, debhelper
dpkg-deb: building package 'sbuild-build-depends-examl-dummy' in '/<<BUILDDIR>>/resolver-TCSNMe/apt_archive/sbuild-build-depends-examl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-examl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ Sources [507 B]
Get:5 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ Packages [588 B]
Fetched 2428 B in 1s (3482 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install examl build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
gfortran-13 groff-base ibverbs-providers intltool-debian libarchive-zip-perl
libbsd0 libcbor0.10 libdebhelper-perl libedit2 libelf1 libevent-2.1-7
libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libfabric1 libfido2-1
libfile-stripnondeterminism-perl libgfortran-13-dev libgfortran5
libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu72
libjs-jquery libjs-jquery-ui libltdl-dev libltdl7 libmagic-mgc libmagic1
libmunge2 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1
libpmix-dev libpmix2 librdmacm1 libsimde-dev libsub-override-perl libtool
libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2
libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common
openssh-client po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev gfortran-13-doc libcoarrays-dev groff
libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils gcj-jdk m4-doc
apparmor less www-browser opencl-icd gfortran | fortran-compiler keychain
libpam-ssh monkeysphere ssh-askpass libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common
libcoarrays-openmpi-dev xauth libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
gfortran-13 groff-base ibverbs-providers intltool-debian libarchive-zip-perl
libbsd0 libcbor0.10 libdebhelper-perl libedit2 libelf1 libevent-2.1-7
libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libfabric1 libfido2-1
libfile-stripnondeterminism-perl libgfortran-13-dev libgfortran5
libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu72
libjs-jquery libjs-jquery-ui libltdl-dev libltdl7 libmagic-mgc libmagic1
libmunge2 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1
libpmix-dev libpmix2 librdmacm1 libsimde-dev libsub-override-perl libtool
libuchardet0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2
libxnvctrl0 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common
openssh-client po-debconf sbuild-build-depends-examl-dummy zlib1g-dev
0 upgraded, 80 newly installed, 0 to remove and 15 not upgraded.
Need to get 41.1 MB of archives.
After this operation, 155 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-TCSNMe/apt_archive ./ sbuild-build-depends-examl-dummy 0.invalid.0 [876 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.8-1 [120 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libedit2 armhf 3.1-20230828-1 [76.0 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libcbor0.10 armhf 0.10.2-1.1 [23.8 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libfido2-1 armhf 1.14.0-1 [67.7 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf openssh-client armhf 1:9.6p1-3 [802 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.13 [85.0 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.13 [889 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-9+rpi1 [247 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-9+rpi1 [293 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-9+rpi1 [7837 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libnl-3-200 armhf 3.7.0-0.3 [51.5 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libnl-route-3-200 armhf 3.7.0-0.3 [149 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libibverbs1 armhf 48.0-1.1 [53.8 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf ibverbs-providers armhf 48.0-1.1 [28.1 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libevent-2.1-7 armhf 2.1.12-stable-8 [160 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-8 [119 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-8 [97.3 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-8 [53.2 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-8 [58.3 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libevent-dev armhf 2.1.12-stable-8 [274 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf librdmacm1 armhf 48.0-1.1 [60.2 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libfabric1 armhf 1.17.0-3 [376 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libhwloc15 armhf 2.10.0-1 [131 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libnuma1 armhf 2.0.16-1 [18.4 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libnuma-dev armhf 2.0.16-1 [31.5 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libltdl7 armhf 2.4.7-7 [390 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libltdl-dev armhf 2.4.7-7 [161 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libhwloc-dev armhf 2.10.0-1 [204 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libpciaccess0 armhf 0.17-3 [49.1 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libxnvctrl0 armhf 525.125.06-1 [12.3 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf ocl-icd-libopencl1 armhf 2.3.2-1 [36.8 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libhwloc-plugins armhf 2.10.0-1 [16.1 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libnl-3-dev armhf 3.7.0-0.3 [89.7 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libnl-route-3-dev armhf 3.7.0-0.3 [160 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libibverbs-dev armhf 48.0-1.1 [193 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libmunge2 armhf 0.5.15-3 [15.8 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libpmix2 armhf 5.0.1-4 [528 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libopenmpi3 armhf 4.1.6-5+rpi1 [1792 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf openmpi-common all 4.1.6-5+rpi1 [166 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libpmix-dev armhf 5.0.1-4 [3831 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf openmpi-bin armhf 4.1.6-5+rpi1 [193 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libopenmpi-dev armhf 4.1.6-5+rpi1 [923 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libsimde-dev all 0.7.6-1 [384 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Not building database; man-db/auto-update is not 'true'.
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Setting up openmpi-bin (4.1.6-5+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libopenmpi-dev:armhf (4.1.6-5+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up sbuild-build-depends-examl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-13+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.2+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 libc6-dev_2.37-13+rpi1 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.7.9 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-9+rpi1 dash_0.5.12-6 debconf_1.5.83 debhelper_13.13 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.2+rpi1 dpkg-dev_1.22.2+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.33-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-9+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-9+rpi1 gcc-13-base_13.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gfortran-13_13.2.0-9+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-4 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu2 ibverbs-providers_48.0-1.1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-5 libacl1_2.3.1-6 libapt-pkg6.0_2.7.9 libarchive-zip-perl_1.68-1 libasan8_13.2.0-9+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-9+rpi1 libattr1_1:2.5.1-5 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41-6+rpi1 libblkid1_2.39.3-6 libboost-iostreams1.74.0_1.74.0+ds1-23 libbsd0_0.11.8-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-13+rpi1 libc-dev-bin_2.37-13+rpi1 libc6_2.37-13+rpi1 libc6-dev_2.37-13+rpi1 libcap-ng0_0.8.4-1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcbor0.10_0.10.2-1.1 libcc1-0_13.2.0-9+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcwidget4_0.5.18-6 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.13 libdpkg-perl_1.22.2+rpi1 libedit2_3.1-20230828-1 libelf1_0.188-2.1+rpi1 libevent-2.1-7_2.1.12-stable-8 libevent-core-2.1-7_2.1.12-stable-8 libevent-dev_2.1.12-stable-8 libevent-extra-2.1-7_2.1.12-stable-8 libevent-openssl-2.1-7_2.1.12-stable-8 libevent-pthreads-2.1-7_2.1.12-stable-8 libext2fs2_1.47.0-2 libfabric1_1.17.0-3 libfakeroot_1.33-1 libffi8_3.4.4-2 libfido2-1_1.14.0-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-9+rpi1 libgcc-s1_13.2.0-9+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran-13-dev_13.2.0-9+rpi1 libgfortran5_13.2.0-9+rpi1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.3-1 libgomp1_13.2.0-9+rpi1 libgpg-error0_1.47-3 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libhwloc-dev_2.10.0-1 libhwloc-plugins_2.10.0-1 libhwloc15_2.10.0-1 libibverbs-dev_48.0-1.1 libibverbs1_48.0-1.1 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-ui_1.13.2+dfsg-1 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 libldap-2.4-2_2.4.59+dfsg-1+b1 libldap-2.5-0_2.5.13+dfsg-5+rpi1+b1 libldap-common_2.5.13+dfsg-5+rpi1 libltdl-dev_2.4.7-7 libltdl7_2.4.7-7 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.5-0.3 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-2 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmunge2_0.5.15-3 libncursesw6_6.4+20240113-1 libnettle8_3.9.1-2 libnl-3-200_3.7.0-0.3 libnl-3-dev_3.7.0-0.3 libnl-route-3-200_3.7.0-0.3 libnl-route-3-dev_3.7.0-0.3 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnuma-dev_2.0.16-1 libnuma1_2.0.16-1 libnumber-compare-perl_0.03-3 libopenmpi-dev_4.1.6-5+rpi1 libopenmpi3_4.1.6-5+rpi1 libp11-kit0_0.25.3-4 libpam-cap_1:2.66-4 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpciaccess0_0.17-3 libpcre2-8-0_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libpmix-dev_5.0.1-4 libpmix2_5.0.1-4 librdmacm1_48.0-1.1 libreadline8_8.2-3 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsigc++-2.0-0v5_2.12.1-1 libsimde-dev_0.7.6-1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-9+rpi1 libstdc++6_13.2.0-9+rpi1 libsub-override-perl_0.10-1 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-glob-perl_0.11-3 libtinfo6_6.4+20240113-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-9+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.3-6 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxapian30_1.4.22-1 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.14+dfsg-1.3 libxnvctrl0_525.125.06-1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1+b1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 mount_2.39.3-6 nano_7.2-2 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 netbase_6.4 ocl-icd-libopencl1_2.3.2-1 openmpi-bin_4.1.6-5+rpi1 openmpi-common_4.1.6-5+rpi1 openssh-client_1:9.6p1-3 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.36_5.36.0-10 pinentry-curses_1.2.1-3 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-examl-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-5 tar_1.35+dfsg-3 tzdata_2023d-1 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Wed Jan 31 17:37:40 2024 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./examl_3.0.22-4.dsc: no acceptable signature found
dpkg-source: info: extracting examl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking examl_3.0.22.orig.tar.gz
dpkg-source: info: unpacking examl_3.0.22-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying simde
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-dc5e5e52-db57-4050-b827-592c0519f312
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package examl
dpkg-buildpackage: info: source version 3.0.22-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --sourcedirectory=examl
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
/usr/bin/make --directory=parser -f Makefile.SSE3.gcc clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/parser'
rm -f *.o parse-examl""
make[2]: Leaving directory '/<<PKGBUILDDIR>>/parser'
find examl -executable -type f -delete
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--sourcedirectory=examl
dh_clean -O--sourcedirectory=examl
debian/rules binary-arch
dh binary-arch --sourcedirectory=examl
dh_update_autotools_config -a -O--sourcedirectory=examl
dh_autoreconf -a -O--sourcedirectory=examl
dh_auto_configure -a -O--sourcedirectory=examl
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
/usr/bin/make --directory=examl -f Makefile.AVX.gcc
make[2]: Entering directory '/<<PKGBUILDDIR>>/examl'
rm -f *.o examl""
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
In function ‘initializePartitions’,
inlined from ‘initializeTree’ at axml.c:2217:3,
inlined from ‘main’ at axml.c:2631:5:
axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from axml.c:44:
/usr/include/stdlib.h: In function ‘main’:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c
partitionAssignment.c: In function ‘printAssignment’:
partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printAssignments’:
partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printLoad’:
partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c
mpicc -o examl"" axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/examl'
/usr/bin/make --directory=examl -f Makefile.OMP.AVX.gcc
make[2]: Entering directory '/<<PKGBUILDDIR>>/examl'
mpicc -o examl-OMP"" axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/examl'
/usr/bin/make --directory=parser -f Makefile.SSE3.gcc
make[2]: Entering directory '/<<PKGBUILDDIR>>/parser'
rm -f *.o parse-examl""
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
axml.c: In function ‘genericBaseFrequencies’:
axml.c:2509:26: warning: comparison is always true due to limited range of data type [-Wtype-limits]
2509 | if(yptr[j] >= 0 && yptr[j] < 20)
| ^~
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c
gcc -o parse-examl"" axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/parser'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--sourcedirectory=examl
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--sourcedirectory=examl
dh_prep -a -O--sourcedirectory=examl
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install examl/{examl,examl-OMP} parser/parse-examl /usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--sourcedirectory=examl
dh_installchangelogs -a -O--sourcedirectory=examl
dh_installman -a -O--sourcedirectory=examl
dh_installsystemduser -a -O--sourcedirectory=examl
dh_perl -a -O--sourcedirectory=examl
dh_link -a -O--sourcedirectory=examl
dh_strip_nondeterminism -a -O--sourcedirectory=examl
dh_compress -a -O--sourcedirectory=examl
dh_fixperms -a -O--sourcedirectory=examl
dh_missing -a -O--sourcedirectory=examl
dh_dwz -a -O--sourcedirectory=examl
dh_strip -a -O--sourcedirectory=examl
dh_makeshlibs -a -O--sourcedirectory=examl
dh_shlibdeps -a -O--sourcedirectory=examl
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/examl/usr/bin/examl-OMP debian/examl/usr/bin/parse-examl debian/examl/usr/bin/examl were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=examl
debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.6-1), "
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_md5sums -a -O--sourcedirectory=examl
dh_builddeb -a -O--sourcedirectory=examl
dpkg-deb: building package 'examl' in '../examl_3.0.22-4_armhf.deb'.
dpkg-deb: building package 'examl-dbgsym' in '../examl-dbgsym_3.0.22-4_armhf.deb'.
dpkg-genbuildinfo --build=any -O../examl_3.0.22-4_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../examl_3.0.22-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-02-06T05:23:43Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
examl_3.0.22-4_armhf.changes:
-----------------------------
Format: 1.8
Date: Wed, 31 Jan 2024 18:29:57 +0100
Source: examl
Binary: examl examl-dbgsym
Architecture: armhf
Version: 3.0.22-4
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
examl - Exascale Maximum Likelihood (ExaML) code for phylogenetic inferen
Closes: 1044839
Changes:
examl (3.0.22-4) unstable; urgency=medium
.
* Packaging update
* Standards-Version: 4.6.2 (routine-update)
* Fix clean target
Closes: #1044839
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Files:
9d71adc5197910bfd009471997ed7dad 505420 debug optional examl-dbgsym_3.0.22-4_armhf.deb
53773ac9302925741bcab5766e26ed96 6776 science optional examl_3.0.22-4_armhf.buildinfo
821bfeff9a4a13ff70b1e7e0ec3ee0ec 801452 science optional examl_3.0.22-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
examl-dbgsym_3.0.22-4_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 505420 bytes: control archive=644 bytes.
405 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: examl-dbgsym
Source: examl
Version: 3.0.22-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 537
Depends: examl (= 3.0.22-4)
Section: debug
Priority: optional
Description: debug symbols for examl
Build-Ids: 2e571579131138c6cf08874301c973c5b2aa2bd1 ba56a75ce218d742c6fe11d8c4b49b8f3b34c5d4
drwxr-xr-x root/root 0 2024-01-31 17:29 ./
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/lib/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/lib/debug/.build-id/2e/
-rw-r--r-- root/root 71044 2024-01-31 17:29 ./usr/lib/debug/.build-id/2e/571579131138c6cf08874301c973c5b2aa2bd1.debug
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/lib/debug/.build-id/ba/
-rw-r--r-- root/root 438848 2024-01-31 17:29 ./usr/lib/debug/.build-id/ba/56a75ce218d742c6fe11d8c4b49b8f3b34c5d4.debug
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 25392 2024-01-31 17:29 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/examl.debug
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-01-31 17:29 ./usr/share/doc/examl-dbgsym -> examl
examl_3.0.22-4_armhf.deb
------------------------
new Debian package, version 2.0.
size 801452 bytes: control archive=1672 bytes.
1389 bytes, 29 lines control
1597 bytes, 23 lines md5sums
Package: examl
Version: 3.0.22-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1664
Depends: libc6 (>= 2.34), libopenmpi3 (>= 4.1.6), openmpi-bin
Built-Using: simde (= 0.7.6-1)
Section: science
Priority: optional
Homepage: https://github.com/stamatak/ExaML
Description: Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference
using MPI. This code implements the popular RAxML search algorithm for
maximum likelihood based inference of phylogenetic trees.
.
ExaML is a strapped-down light-weight version of RAxML for phylogenetic
inference on huge datasets. It can only execute some very basic
functions and is intended for computer-savvy users that can write little
perl-scripts and have experience using queue submission scripts for
clusters. ExaML only implements the CAT and GAMMA models of rate
heterogeneity for binary, DNA, and protein data.
.
ExaML uses a radically new MPI parallelization approach that yields
improved parallel efficiency, in particular on partitioned multi-gene or
whole-genome datasets. It also implements a new load balancing algorithm
that yields better parallel efficiency.
.
It is up to 4 times faster than its predecessor RAxML-Light and scales
to a larger number of processors.
drwxr-xr-x root/root 0 2024-01-31 17:29 ./
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/bin/
-rwxr-xr-x root/root 497980 2024-01-31 17:29 ./usr/bin/examl
-rwxr-xr-x root/root 497980 2024-01-31 17:29 ./usr/bin/examl-OMP
-rwxr-xr-x root/root 63792 2024-01-31 17:29 ./usr/bin/parse-examl
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/doc-base/
-rw-r--r-- root/root 1137 2024-01-31 17:29 ./usr/share/doc-base/examl.examl
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/doc/examl/
-rw-r--r-- root/root 102882 2020-04-21 04:23 ./usr/share/doc/examl/ExaML.odt
-rw-r--r-- root/root 352609 2020-04-21 04:23 ./usr/share/doc/examl/ExaML.pdf.gz
-rw-r--r-- root/root 1178 2020-04-21 04:23 ./usr/share/doc/examl/README.md
-rw-r--r-- root/root 496 2024-01-31 17:29 ./usr/share/doc/examl/README.test
-rw-r--r-- root/root 974 2024-01-31 17:29 ./usr/share/doc/examl/changelog.Debian.gz
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/doc/examl/codeDocumentation/
-rw-r--r-- root/root 173 2020-04-21 04:23 ./usr/share/doc/examl/codeDocumentation/PSR.txt
-rw-r--r-- root/root 57843 2020-04-21 04:23 ./usr/share/doc/examl/codeDocumentation/startupIllustration.pdf.gz
-rw-r--r-- root/root 30059 2020-04-21 04:23 ./usr/share/doc/examl/codeDocumentation/startupIllustration.svg
-rw-r--r-- root/root 1133 2024-01-31 17:29 ./usr/share/doc/examl/copyright
-rw-r--r-- root/root 2979 2024-01-31 17:29 ./usr/share/doc/examl/run-unit-test
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/doc/examl/testData/
-rw-r--r-- root/root 49978 2020-04-21 04:23 ./usr/share/doc/examl/testData/140.gz
-rw-r--r-- root/root 55 2020-04-21 04:23 ./usr/share/doc/examl/testData/140.model
-rw-r--r-- root/root 1149 2020-04-21 04:23 ./usr/share/doc/examl/testData/140.tree
-rw-r--r-- root/root 2304 2020-04-21 04:23 ./usr/share/doc/examl/testData/354.tree.gz
-rw-r--r-- root/root 9101 2020-04-21 04:23 ./usr/share/doc/examl/testData/49.gz
-rw-r--r-- root/root 85 2020-04-21 04:23 ./usr/share/doc/examl/testData/49.model
-rw-r--r-- root/root 380 2020-04-21 04:23 ./usr/share/doc/examl/testData/49.tree
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/man/
drwxr-xr-x root/root 0 2024-01-31 17:29 ./usr/share/man/man1/
-rw-r--r-- root/root 2469 2024-01-31 17:29 ./usr/share/man/man1/examl.1.gz
-rw-r--r-- root/root 535 2024-01-31 17:29 ./usr/share/man/man1/parse-examl.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 12772
Build-Time: 428
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 617
Job: examl_3.0.22-4
Machine Architecture: armhf
Package: examl
Package-Time: 1102
Source-Version: 3.0.22-4
Space: 12772
Status: successful
Version: 3.0.22-4
--------------------------------------------------------------------------------
Finished at 2024-02-06T05:23:43Z
Build needed 00:18:22, 12772k disc space