examl →
3.0.22-3 →
armhf → 2022-01-24 04:56:05
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| examl 3.0.22-3 (armhf) Mon, 24 Jan 2022 04:36:27 +0000 |
+==============================================================================+
Package: examl
Version: 3.0.22-3
Source Version: 3.0.22-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-4125ec96-b532-40df-88f4-1b2d90455067' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.3 MB in 26s (1025 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'examl' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/examl.git
Please use:
git clone https://salsa.debian.org/med-team/examl.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 970 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main examl 3.0.22-3 (dsc) [2012 B]
Get:2 http://172.17.4.1/private bookworm-staging/main examl 3.0.22-3 (tar) [941 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main examl 3.0.22-3 (diff) [27.0 kB]
Fetched 970 kB in 0s (4711 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/examl-uuVFid/examl-3.0.22' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/examl-uuVFid' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-hzPHjO/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-hzPHjO/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-hzPHjO/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2550 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 74 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (21.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libopenmpi-dev, libsimde-dev, debhelper
Filtered Build-Depends: debhelper-compat (= 13), libopenmpi-dev, libsimde-dev, debhelper
dpkg-deb: building package 'sbuild-build-depends-examl-dummy' in '/<<BUILDDIR>>/resolver-hzPHjO/apt_archive/sbuild-build-depends-examl-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-examl-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ Sources [507 B]
Get:5 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ Packages [589 B]
Fetched 2429 B in 1s (3124 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install examl build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cpp-11 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++-11 gcc-11 gcc-11-base
gettext gettext-base gfortran-11 groff-base ibverbs-providers
intltool-debian libarchive-zip-perl libasan6 libatomic1 libbrotli1 libbsd0
libcbor0.8 libcc1-0 libcurl3-gnutls libdebhelper-perl libedit2 libelf1
libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7
libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1
libfile-stripnondeterminism-perl libgcc-11-dev libgcc-s1 libgfortran-11-dev
libgfortran5 libgomp1 libhwloc-dev libhwloc-plugins libhwloc15
libibverbs-dev libibverbs1 libicu67 libjs-jquery libjs-jquery-ui libltdl-dev
libltdl7 libmagic-mgc libmagic1 libmd0 libnghttp2-14 libnl-3-200 libnl-3-dev
libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev
libopenmpi3 libpciaccess0 libpipeline1 libpmix-dev libpmix2 libpsl5
librdmacm1 librtmp1 libsigsegv2 libsimde-dev libssh2-1 libstdc++-11-dev
libstdc++6 libsub-override-perl libtool libubsan1 libuchardet0 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-11-locales dh-make
gcc-11-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-11-doc
libcoarrays-dev groff libjs-jquery-ui-docs libtool-doc openmpi-doc pciutils
libstdc++-11-doc gcj-jdk m4-doc apparmor less www-browser opencl-icd
gfortran | fortran-compiler keychain libpam-ssh monkeysphere ssh-askpass
libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common
libcoarrays-openmpi-dev publicsuffix xauth libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
gfortran-11 groff-base ibverbs-providers intltool-debian libarchive-zip-perl
libbrotli1 libbsd0 libcbor0.8 libcurl3-gnutls libdebhelper-perl libedit2
libelf1 libevent-2.1-7 libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7
libevent-openssl-2.1-7 libevent-pthreads-2.1-7 libfabric1 libfido2-1
libfile-stripnondeterminism-perl libgfortran-11-dev libgfortran5
libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu67
libjs-jquery libjs-jquery-ui libltdl-dev libltdl7 libmagic-mgc libmagic1
libmd0 libnghttp2-14 libnl-3-200 libnl-3-dev libnl-route-3-200
libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev libopenmpi3
libpciaccess0 libpipeline1 libpmix-dev libpmix2 libpsl5 librdmacm1 librtmp1
libsigsegv2 libsimde-dev libssh2-1 libsub-override-perl libtool libuchardet0
libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0
m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client
po-debconf sbuild-build-depends-examl-dummy zlib1g-dev
The following packages will be upgraded:
cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-11-dev
libgcc-s1 libgomp1 libstdc++-11-dev libstdc++6 libubsan1
13 upgraded, 87 newly installed, 0 to remove and 61 not upgraded.
Need to get 72.4 MB of archives.
After this operation, 200 MB disk space will be freed.
Get:1 copy:/<<BUILDDIR>>/resolver-hzPHjO/apt_archive ./ sbuild-build-depends-examl-dummy 0.invalid.0 [880 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-13+rpi1 [37.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-13+rpi1 [88.0 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-13+rpi1 [8196 B]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-13+rpi1 [1947 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-13+rpi1 [799 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-13+rpi1 [207 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-13+rpi1 [467 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-13+rpi1 [7910 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-13+rpi1 [1961 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-13+rpi1 [701 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-13+rpi1 [14.0 MB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-13+rpi1 [7071 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-13+rpi1 [36.1 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-6 [136 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-4 [1308 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libcbor0.8 armhf 0.8.0-2 [22.8 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libfido2-1 armhf 1.9.0-2 [65.2 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf openssh-client armhf 1:8.7p1-4 [882 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-13+rpi1 [235 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.2.0-13+rpi1 [280 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.2.0-13+rpi1 [7573 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libibverbs1 armhf 38.0-1 [53.8 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf ibverbs-providers armhf 38.0-1 [28.6 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.81.0-1 [315 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [167 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-1 [100 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-1 [61.7 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libevent-dev armhf 2.1.12-stable-1 [281 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf librdmacm1 armhf 38.0-1 [60.5 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfabric1 armhf 1.11.0-3 [310 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libhwloc15 armhf 2.7.0-1 [127 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libnuma1 armhf 2.0.14-3 [21.8 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libnuma-dev armhf 2.0.14-3 [34.7 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libltdl7 armhf 2.4.6-15 [388 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libltdl-dev armhf 2.4.6-15 [159 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libhwloc-dev armhf 2.7.0-1 [198 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpciaccess0 armhf 0.16-3 [51.2 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxnvctrl0 armhf 470.94-1 [26.1 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf ocl-icd-libopencl1 armhf 2.2.14-3 [39.9 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libhwloc-plugins armhf 2.7.0-1 [20.2 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libibverbs-dev armhf 38.0-1 [188 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [315 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.0+dfsg-1 [250 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libpmix2 armhf 4.1.1~rc6-1 [481 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libopenmpi3 armhf 4.1.2~rc1-5+rpi1+b1 [1776 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf openmpi-common all 4.1.2~rc1-5+rpi1 [180 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libpmix-dev armhf 4.1.1~rc6-1 [645 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf openmpi-bin armhf 4.1.2~rc1-5+rpi1+b1 [209 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libopenmpi-dev armhf 4.1.2~rc1-5+rpi1+b1 [937 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libsimde-dev all 0.7.2-6 [259 kB]
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Setting up openmpi-common (4.1.2~rc1-5+rpi1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ...
Setting up libfido2-1:armhf (1.9.0-2) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libelf1:armhf (0.186-1) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libcc1-0:armhf (11.2.0-13+rpi1) ...
Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libevent-extra-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up libgfortran-11-dev:armhf (11.2.0-13+rpi1) ...
Setting up libedit2:armhf (3.1-20210910-1) ...
Setting up libevent-openssl-2.1-7:armhf (2.1.12-stable-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.81.0-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libnuma-dev:armhf (2.0.14-3) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up libjs-jquery-ui (1.13.0+dfsg-1) ...
Setting up libevent-dev (2.1.12-stable-1) ...
Setting up autoconf (2.71-2) ...
Setting up libstdc++-11-dev:armhf (11.2.0-13+rpi1) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up gcc-11 (11.2.0-13+rpi1) ...
Setting up groff-base (1.22.4-8) ...
Setting up libx11-6:armhf (2:1.7.2-2) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libibverbs1:armhf (38.0-1) ...
Setting up ibverbs-providers:armhf (38.0-1) ...
Setting up g++-11 (11.2.0-13+rpi1) ...
Setting up openssh-client (1:8.7p1-4) ...
update-alternatives: using /usr/bin/ssh to provide /usr/bin/rsh (rsh) in auto mode
update-alternatives: using /usr/bin/slogin to provide /usr/bin/rlogin (rlogin) in auto mode
update-alternatives: using /usr/bin/scp to provide /usr/bin/rcp (rcp) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up man-db (2.9.4-4) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxnvctrl0:armhf (470.94-1) ...
Setting up dh-autoreconf (20) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libltdl-dev:armhf (2.4.6-15) ...
Setting up gfortran-11 (11.2.0-13+rpi1) ...
Setting up libhwloc-dev:armhf (2.7.0-1) ...
Setting up librdmacm1:armhf (38.0-1) ...
Setting up debhelper (13.6) ...
Setting up libibverbs-dev:armhf (38.0-1) ...
Setting up libhwloc-plugins:armhf (2.7.0-1) ...
Setting up libfabric1:armhf (1.11.0-3) ...
Setting up libpmix2:armhf (4.1.1~rc6-1) ...
Setting up libopenmpi3:armhf (4.1.2~rc1-5+rpi1+b1) ...
Setting up libpmix-dev:armhf (4.1.1~rc6-1) ...
Setting up openmpi-bin (4.1.2~rc1-5+rpi1+b1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libopenmpi-dev:armhf (4.1.2~rc1-5+rpi1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up sbuild-build-depends-examl-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-13+rpi1 gcc-11_11.2.0-13+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-13+rpi1 libstdc++6_11.2.0-13+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-6 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-13+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-13+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-13+rpi1 gcc-11-base_11.2.0-13+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran-11_11.2.0-13+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 ibverbs-providers_38.0-1 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.12 libarchive-zip-perl_1.68-1 libasan6_11.2.0-13+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-13+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcbor0.8_0.8.0-2 libcc1-0_11.2.0-13+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdpkg-perl_1.20.9+rpi1 libedit2_3.1-20210910-1 libelf1_0.186-1 libevent-2.1-7_2.1.12-stable-1 libevent-core-2.1-7_2.1.12-stable-1 libevent-dev_2.1.12-stable-1 libevent-extra-2.1-7_2.1.12-stable-1 libevent-openssl-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libext2fs2_1.46.4-1 libfabric1_1.11.0-3 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfido2-1_1.9.0-2 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-13+rpi1 libgcc-s1_11.2.0-13+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran-11-dev_11.2.0-13+rpi1 libgfortran5_11.2.0-13+rpi1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-2 libgomp1_11.2.0-13+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhwloc-dev_2.7.0-1 libhwloc-plugins_2.7.0-1 libhwloc15_2.7.0-1 libibverbs-dev_38.0-1 libibverbs1_38.0-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjs-jquery-ui_1.13.0+dfsg-1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 libltdl-dev_2.4.6-15 libltdl7_2.4.6-15 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmd0_1.0.4-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncursesw6_6.3-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnuma-dev_2.0.14-3 libnuma1_2.0.14-3 libopenmpi-dev_4.1.2~rc1-5+rpi1+b1 libopenmpi3_4.1.2~rc1-5+rpi1+b1 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpciaccess0_0.16-3 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libpmix-dev_4.1.1~rc6-1 libpmix2_4.1.1~rc6-1 libpsl5_0.21.0-1.2 librdmacm1_38.0-1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg2-2 libsasl2-modules-db_2.1.27+dfsg2-2 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-6 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-13+rpi1 libstdc++6_11.2.0-13+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.7-1+rpi1 libtasn1-6_4.18.0-4 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-13+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.12+dfsg-5 libxnvctrl0_470.94-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 netbase_6.3 ocl-icd-libopencl1_2.2.14-3 openmpi-bin_4.1.2~rc1-5+rpi1+b1 openmpi-common_4.1.2~rc1-5+rpi1 openssh-client_1:8.7p1-4 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-examl-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.lK9NdBo2/trustedkeys.kbx': General error
gpgv: Signature made Tue Jan 18 17:42:01 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./examl_3.0.22-3.dsc
dpkg-source: info: extracting examl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking examl_3.0.22.orig.tar.gz
dpkg-source: info: unpacking examl_3.0.22-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying simde
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4125ec96-b532-40df-88f4-1b2d90455067
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package examl
dpkg-buildpackage: info: source version 3.0.22-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --sourcedirectory=examl
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
/usr/bin/make --directory=parser -f Makefile.SSE3.gcc clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/parser'
rm -f *.o parse-examl""
make[2]: Leaving directory '/<<PKGBUILDDIR>>/parser'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--sourcedirectory=examl
dh_clean -O--sourcedirectory=examl
debian/rules binary-arch
dh binary-arch --sourcedirectory=examl
dh_update_autotools_config -a -O--sourcedirectory=examl
dh_autoreconf -a -O--sourcedirectory=examl
dh_auto_configure -a -O--sourcedirectory=examl
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
/usr/bin/make --directory=examl -f Makefile.AVX.gcc
make[2]: Entering directory '/<<PKGBUILDDIR>>/examl'
rm -f *.o examl""
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
In function ‘initializePartitions’,
inlined from ‘initializeTree’ at axml.c:2217:3,
inlined from ‘main’ at axml.c:2631:5:
axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from axml.c:44:
axml.c: In function ‘main’:
/usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here
542 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c
partitionAssignment.c: In function ‘printAssignment’:
partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printAssignments’:
partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId);
| ~~^ ~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
partitionAssignment.c: In function ‘printLoad’:
partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| long unsigned int size_t {aka unsigned int}
| %u
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c
mpicc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c
mpicc -o examl"" axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/examl'
/usr/bin/make --directory=examl -f Makefile.OMP.AVX.gcc
make[2]: Entering directory '/<<PKGBUILDDIR>>/examl'
mpicc -o examl-OMP"" axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/examl'
/usr/bin/make --directory=parser -f Makefile.SSE3.gcc
make[2]: Entering directory '/<<PKGBUILDDIR>>/parser'
rm -f *.o parse-examl""
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c
axml.c: In function ‘genericBaseFrequencies’:
axml.c:2509:26: warning: comparison is always true due to limited range of data type [-Wtype-limits]
2509 | if(yptr[j] >= 0 && yptr[j] < 20)
| ^~
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c
gcc -o parse-examl"" axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/parser'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a -O--sourcedirectory=examl
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--sourcedirectory=examl
dh_prep -a -O--sourcedirectory=examl
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install examl/{examl,examl-OMP} parser/parse-examl /usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--sourcedirectory=examl
dh_installchangelogs -a -O--sourcedirectory=examl
dh_installman -a -O--sourcedirectory=examl
dh_installsystemduser -a -O--sourcedirectory=examl
dh_perl -a -O--sourcedirectory=examl
dh_link -a -O--sourcedirectory=examl
dh_strip_nondeterminism -a -O--sourcedirectory=examl
dh_compress -a -O--sourcedirectory=examl
dh_fixperms -a -O--sourcedirectory=examl
dh_missing -a -O--sourcedirectory=examl
dh_dwz -a -O--sourcedirectory=examl
dh_strip -a -O--sourcedirectory=examl
dh_makeshlibs -a -O--sourcedirectory=examl
dh_shlibdeps -a -O--sourcedirectory=examl
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/examl/usr/bin/parse-examl debian/examl/usr/bin/examl debian/examl/usr/bin/examl-OMP were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=examl
debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-6), "
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_md5sums -a -O--sourcedirectory=examl
dh_builddeb -a -O--sourcedirectory=examl
dpkg-deb: building package 'examl' in '../examl_3.0.22-3_armhf.deb'.
dpkg-deb: building package 'examl-dbgsym' in '../examl-dbgsym_3.0.22-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../examl_3.0.22-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-01-24T04:55:58Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
examl_3.0.22-3_armhf.changes:
-----------------------------
Format: 1.8
Date: Tue, 18 Jan 2022 18:00:33 +0100
Source: examl
Binary: examl examl-dbgsym
Architecture: armhf
Version: 3.0.22-3
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
examl - Exascale Maximum Likelihood (ExaML) code for phylogenetic inferen
Changes:
examl (3.0.22-3) unstable; urgency=medium
.
* Really fix watch file
* Add missing build dependency on dh addon.
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Files:
f6b02ff280229c4e804a7ae835501edb 509704 debug optional examl-dbgsym_3.0.22-3_armhf.deb
1a7c63efe7e57d0f333629ad704b080d 6930 science optional examl_3.0.22-3_armhf.buildinfo
0a1663219bb18b6dd6b9edeed8a25eeb 799304 science optional examl_3.0.22-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
examl-dbgsym_3.0.22-3_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 509704 bytes: control archive=640 bytes.
405 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: examl-dbgsym
Source: examl
Version: 3.0.22-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 542
Depends: examl (= 3.0.22-3)
Section: debug
Priority: optional
Description: debug symbols for examl
Build-Ids: 6d3bbdc6ee88faeaa412038cd7d4281b47988bab 7248a8186e13f5dce9f0b75cfe0fcc627597bba8
drwxr-xr-x root/root 0 2022-01-18 17:00 ./
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/lib/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/lib/debug/.build-id/6d/
-rw-r--r-- root/root 443572 2022-01-18 17:00 ./usr/lib/debug/.build-id/6d/3bbdc6ee88faeaa412038cd7d4281b47988bab.debug
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/lib/debug/.build-id/72/
-rw-r--r-- root/root 70716 2022-01-18 17:00 ./usr/lib/debug/.build-id/72/48a8186e13f5dce9f0b75cfe0fcc627597bba8.debug
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 25268 2022-01-18 17:00 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/examl.debug
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-01-18 17:00 ./usr/share/doc/examl-dbgsym -> examl
examl_3.0.22-3_armhf.deb
------------------------
new Debian package, version 2.0.
size 799304 bytes: control archive=1684 bytes.
1393 bytes, 29 lines control
1597 bytes, 23 lines md5sums
Package: examl
Version: 3.0.22-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1665
Depends: libc6 (>= 2.29), libopenmpi3 (>= 4.1.2~rc1), openmpi-bin
Built-Using: simde (= 0.7.2-6)
Section: science
Priority: optional
Homepage: https://github.com/stamatak/ExaML
Description: Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference
using MPI. This code implements the popular RAxML search algorithm for
maximum likelihood based inference of phylogenetic trees.
.
ExaML is a strapped-down light-weight version of RAxML for phylogenetic
inference on huge datasets. It can only execute some very basic
functions and is intended for computer-savvy users that can write little
perl-scripts and have experience using queue submission scripts for
clusters. ExaML only implements the CAT and GAMMA models of rate
heterogeneity for binary, DNA, and protein data.
.
ExaML uses a radically new MPI parallelization approach that yields
improved parallel efficiency, in particular on partitioned multi-gene or
whole-genome datasets. It also implements a new load balancing algorithm
that yields better parallel efficiency.
.
It is up to 4 times faster than its predecessor RAxML-Light and scales
to a larger number of processors.
drwxr-xr-x root/root 0 2022-01-18 17:00 ./
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/bin/
-rwxr-xr-x root/root 497980 2022-01-18 17:00 ./usr/bin/examl
-rwxr-xr-x root/root 497980 2022-01-18 17:00 ./usr/bin/examl-OMP
-rwxr-xr-x root/root 63792 2022-01-18 17:00 ./usr/bin/parse-examl
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/doc-base/
-rw-r--r-- root/root 1137 2022-01-18 17:00 ./usr/share/doc-base/examl.examl
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/doc/examl/
-rw-r--r-- root/root 102882 2020-04-21 04:23 ./usr/share/doc/examl/ExaML.odt
-rw-r--r-- root/root 352609 2020-04-21 04:23 ./usr/share/doc/examl/ExaML.pdf.gz
-rw-r--r-- root/root 1178 2020-04-21 04:23 ./usr/share/doc/examl/README.md
-rw-r--r-- root/root 496 2022-01-18 17:00 ./usr/share/doc/examl/README.test
-rw-r--r-- root/root 1073 2022-01-18 17:00 ./usr/share/doc/examl/changelog.Debian.gz
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/doc/examl/codeDocumentation/
-rw-r--r-- root/root 173 2020-04-21 04:23 ./usr/share/doc/examl/codeDocumentation/PSR.txt
-rw-r--r-- root/root 57843 2020-04-21 04:23 ./usr/share/doc/examl/codeDocumentation/startupIllustration.pdf.gz
-rw-r--r-- root/root 30059 2020-04-21 04:23 ./usr/share/doc/examl/codeDocumentation/startupIllustration.svg
-rw-r--r-- root/root 1133 2022-01-18 17:00 ./usr/share/doc/examl/copyright
-rw-r--r-- root/root 2979 2022-01-18 17:00 ./usr/share/doc/examl/run-unit-test
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/doc/examl/testData/
-rw-r--r-- root/root 49978 2020-04-21 04:23 ./usr/share/doc/examl/testData/140.gz
-rw-r--r-- root/root 55 2020-04-21 04:23 ./usr/share/doc/examl/testData/140.model
-rw-r--r-- root/root 1149 2020-04-21 04:23 ./usr/share/doc/examl/testData/140.tree
-rw-r--r-- root/root 2304 2020-04-21 04:23 ./usr/share/doc/examl/testData/354.tree.gz
-rw-r--r-- root/root 9101 2020-04-21 04:23 ./usr/share/doc/examl/testData/49.gz
-rw-r--r-- root/root 85 2020-04-21 04:23 ./usr/share/doc/examl/testData/49.model
-rw-r--r-- root/root 380 2020-04-21 04:23 ./usr/share/doc/examl/testData/49.tree
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/man/
drwxr-xr-x root/root 0 2022-01-18 17:00 ./usr/share/man/man1/
-rw-r--r-- root/root 2469 2022-01-18 17:00 ./usr/share/man/man1/examl.1.gz
-rw-r--r-- root/root 535 2022-01-18 17:00 ./usr/share/man/man1/parse-examl.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 12680
Build-Time: 385
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 735
Job: examl_3.0.22-3
Machine Architecture: armhf
Package: examl
Package-Time: 1171
Source-Version: 3.0.22-3
Space: 12680
Status: successful
Version: 3.0.22-3
--------------------------------------------------------------------------------
Finished at 2022-01-24T04:55:58Z
Build needed 00:19:31, 12680k disc space