estscan →
3.0.3-6+b3 →
armhf → 2022-10-28 12:04:18
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| estscan 3.0.3-6+b3 (armhf) Fri, 28 Oct 2022 11:58:19 +0000 |
+==============================================================================+
Package: estscan
Version: 3.0.3-6+b3
Source Version: 3.0.3-6
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-3cb03129-e32e-4619-ab1b-f40424dad4c9' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.6 MB in 28s (975 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'estscan' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/estscan.git
Please use:
git clone https://salsa.debian.org/med-team/estscan.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 61.4 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main estscan 3.0.3-6 (dsc) [1963 B]
Get:2 http://172.17.4.1/private bookworm-staging/main estscan 3.0.3-6 (tar) [46.4 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main estscan 3.0.3-6 (diff) [13.0 kB]
Fetched 61.4 kB in 0s (612 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/estscan-qJV2k0/estscan-3.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/estscan-qJV2k0' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gkyENf/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-gkyENf/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-gkyENf/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2732 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12907 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), gfortran
Filtered Build-Depends: debhelper-compat (= 13), gfortran
dpkg-deb: building package 'sbuild-build-depends-estscan-dummy' in '/<<BUILDDIR>>/resolver-gkyENf/apt_archive/sbuild-build-depends-estscan-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-estscan-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ Sources [498 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ Packages [577 B]
Fetched 2408 B in 1s (3291 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install estscan build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-12 groff-base intltool-debian libarchive-zip-perl libdebhelper-perl
libelf1 libfile-stripnondeterminism-perl libgfortran-12-dev libgfortran5
libicu71 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc
libcoarrays-dev groff libtool-doc gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-12 groff-base intltool-debian libarchive-zip-perl libdebhelper-perl
libelf1 libfile-stripnondeterminism-perl libgfortran-12-dev libgfortran5
libicu71 libmagic-mgc libmagic1 libpipeline1 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-estscan-dummy
0 upgraded, 34 newly installed, 0 to remove and 27 not upgraded.
Need to get 25.9 MB of archives.
After this operation, 97.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gkyENf/apt_archive ./ sbuild-build-depends-estscan-dummy 0.invalid.0 [864 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1.1 [78.2 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.0-1 [1299 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.10 [79.8 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.10 [940 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-3+rpi1 [238 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-3+rpi1 [285 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-3+rpi1 [7509 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 25.9 MB in 2s (10.8 MB/s)
Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 12907 files and directories currently installed.)
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Preparing to unpack .../03-libpipeline1_1.5.6-3_armhf.deb ...
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Setting up libpipeline1:armhf (1.5.6-3) ...
Setting up libicu71:armhf (71.1-3) ...
Setting up bsdextrautils (2.38.1-1.1) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.10) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up gettext-base (0.21-9) ...
Setting up m4 (1.4.19-1) ...
Setting up file (1:5.41-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.21-9) ...
Setting up libgfortran5:armhf (12.2.0-3+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up gettext (0.21-9) ...
Setting up libtool (2.4.7-4) ...
Setting up libgfortran-12-dev:armhf (12.2.0-3+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up gfortran-12 (12.2.0-3+rpi1) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-8) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up debhelper (13.10) ...
Setting up sbuild-build-depends-estscan-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-1.1 bsdutils_1:2.38.1-1.1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-10-base_10.4.0-5+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-3+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-6+rpi1 libblkid1_2.38.1-1.1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-3+rpi1 libgfortran5_12.2.0-3+rpi1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.4-2_2.4.59+dfsg-1 libldap-2.5-0_2.5.13+dfsg-2+rpi1 libldap-common_2.5.13+dfsg-2+rpi1 liblocale-gettext-perl_1.07-4+b2 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1.1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-3 libreadline8_8.2-1 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1.1 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtext-charwidth-perl_0.04-10+b2 libtext-iconv-perl_1.7-7+b2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-1.1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-1.1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-estscan-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 util-linux_2.38.1-1.1 util-linux-extra_2.38.1-1.1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.l8RcpVw5/trustedkeys.kbx': General error
gpgv: Signature made Mon Aug 16 11:48:09 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./estscan_3.0.3-6.dsc
dpkg-source: info: extracting estscan in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking estscan_3.0.3.orig.tar.gz
dpkg-source: info: unpacking estscan_3.0.3-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makfile.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.0.3-6+b3
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-3cb03129-e32e-4619-ab1b-f40424dad4c9
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package estscan
dpkg-buildpackage: info: source version 3.0.3-6+b3
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
\rm -f *~ maskred makesmat estscan winsegshuffle *.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c maskred.c
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c makesmat.c
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c estscan.c
gfortran -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c winsegshuffle.f
winsegshuffle.f:121:72:
121 | IF(J.GT.97.OR.J.LT.1) PAUSE
| 1
Warning: Deleted feature: PAUSE statement at (1)
estscan.c: In function 'Compute':
estscan.c:784:38: warning: variable 'tmpScore' set but not used [-Wunused-but-set-variable]
784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore;
| ^~~~~~~~
estscan.c:784:29: warning: variable 'tmpPrev' set but not used [-Wunused-but-set-variable]
784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore;
| ^~~~~~~
maskred.c:124:33: warning: 'bitValue' is static but used in inline function 'testBit' which is not static
124 | { return(bitField[index >> 3] & bitValue[index & 7]); }
| ^~~~~~~~
maskred.c:121:27: warning: 'bitValue' is static but used in inline function 'setBit' which is not static
121 | { bitField[index >> 3] |= bitValue[index & 7]; }
| ^~~~~~~~
makesmat.c: In function 'count_tuples':
maskred.c: In function 'mask_file':
makesmat.c:306:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fgets(buf, 1024, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~
maskred.c:203:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
203 | fgets(buf, 1024, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~
maskred.c:210:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
210 | fgets(buf, 1024, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~
makesmat.c:325:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
325 | fgets(buf, 1024, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~
maskred.c: At top level:
maskred.c:161:13: warning: 'printTuple' defined but not used [-Wunused-function]
161 | static void printTuple(unsigned long index, int len)
| ^~~~~~~~~~
gfortran -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o winsegshuffle winsegshuffle.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o maskred maskred.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o makesmat makesmat.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o estscan estscan.o -lm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/estscan/ -a
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
set -e ; \
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dwz: debian/estscan/usr/bin/estscan: DWARF compression not beneficial - old size 19832 new size 19993
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/estscan/usr/bin/estscan debian/estscan/usr/bin/makesmat debian/estscan/usr/bin/maskred debian/estscan/usr/bin/winsegshuffle were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'estscan' in '../estscan_3.0.3-6+b3_armhf.deb'.
dpkg-deb: building package 'estscan-dbgsym' in '../estscan-dbgsym_3.0.3-6+b3_armhf.deb'.
dpkg-genbuildinfo --build=any -O../estscan_3.0.3-6+b3_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../estscan_3.0.3-6+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-10-28T12:04:13Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
estscan_3.0.3-6+b3_armhf.changes:
---------------------------------
Format: 1.8
Date: Mon, 16 Aug 2021 17:16:42 +0530
Source: estscan (3.0.3-6)
Binary: estscan estscan-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 3.0.3-6+b3
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
estscan - ORF-independent detector of coding DNA sequences
Changes:
estscan (3.0.3-6+b3) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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00e416b8641ce429057343cee26c8c3d2251d731 5330 estscan_3.0.3-6+b3_armhf.buildinfo
eabc3244410e42872c4da4277ef04411ab5af244 50612 estscan_3.0.3-6+b3_armhf.deb
Checksums-Sha256:
e36b8ad60cb993050f131114ddf1d1ca7a26be3fde2a78c8dc1ab74273bcf370 57748 estscan-dbgsym_3.0.3-6+b3_armhf.deb
ad45dd43834a981c42878483c1fdbc85a341c81c6505f7ac15c509b6efbde63b 5330 estscan_3.0.3-6+b3_armhf.buildinfo
3572814bdadeeeccd3d4555c91a6c4e78e3e8cd445bff3b0044883e44d21a059 50612 estscan_3.0.3-6+b3_armhf.deb
Files:
e2bebb1cb91c37fd8bdab2fcc55edb6e 57748 debug optional estscan-dbgsym_3.0.3-6+b3_armhf.deb
2c3750091304fe2739e30982cd9ebd7a 5330 science optional estscan_3.0.3-6+b3_armhf.buildinfo
f8fe2ce7498fcb35c72af2d53317d7f9 50612 science optional estscan_3.0.3-6+b3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
estscan-dbgsym_3.0.3-6+b3_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 57748 bytes: control archive=748 bytes.
508 bytes, 12 lines control
511 bytes, 5 lines md5sums
Package: estscan-dbgsym
Source: estscan (3.0.3-6)
Version: 3.0.3-6+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 94
Depends: estscan (= 3.0.3-6+b3)
Section: debug
Priority: optional
Description: debug symbols for estscan
Build-Ids: 25acf4796be15b15240712d6314095215e323908 7960250bef054715542423f0fe77bb9ce7dd4c29 bea7fe8da6f4a77dc20ed48693a36e555d9d31cf fe3c466b53b265bbc25df858ebf0d5bc1382ab99
drwxr-xr-x root/root 0 2021-08-16 11:46 ./
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/25/
-rw-r--r-- root/root 35248 2021-08-16 11:46 ./usr/lib/debug/.build-id/25/acf4796be15b15240712d6314095215e323908.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/79/
-rw-r--r-- root/root 11472 2021-08-16 11:46 ./usr/lib/debug/.build-id/79/60250bef054715542423f0fe77bb9ce7dd4c29.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/be/
-rw-r--r-- root/root 10308 2021-08-16 11:46 ./usr/lib/debug/.build-id/be/a7fe8da6f4a77dc20ed48693a36e555d9d31cf.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/fe/
-rw-r--r-- root/root 18260 2021-08-16 11:46 ./usr/lib/debug/.build-id/fe/3c466b53b265bbc25df858ebf0d5bc1382ab99.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 2404 2021-08-16 11:46 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/estscan.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan-dbgsym -> estscan
estscan_3.0.3-6+b3_armhf.deb
----------------------------
new Debian package, version 2.0.
size 50612 bytes: control archive=1516 bytes.
1317 bytes, 25 lines control
1016 bytes, 16 lines md5sums
Package: estscan
Source: estscan (3.0.3-6)
Version: 3.0.3-6+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 430
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgfortran5 (>= 8), perl:any
Section: science
Priority: optional
Homepage: http://estscan.sourceforge.net/
Description: ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences,
even if they are of low quality. ESTScan will also detect and correct
sequencing errors that lead to frameshifts. ESTScan is not a gene
prediction program , nor is it an open reading frame detector. In fact,
its strength lies in the fact that it does not require an open reading
frame to detect a coding region. As a result, the program may miss a
few translated amino acids at either the N or the C terminus, but will
detect coding regions with high selectivity and sensitivity.
.
ESTScan takes advantages of the bias in hexanucleotide usage found in
coding regions relative to non-coding regions. This bias is formalized
as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
(HMM). Additionally, the HMM of ESTScan has been extended to allows
insertions and deletions when these improve the coding region statistics.
drwxr-xr-x root/root 0 2021-08-16 11:46 ./
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/bin/
-rwxr-xr-x root/root 67028 2021-08-16 11:46 ./usr/bin/estscan
-rwxr-xr-x root/root 25411 2021-08-16 11:46 ./usr/bin/evaluate_model
-rwxr-xr-x root/root 18833 2021-08-16 11:46 ./usr/bin/extract_EST
-rwxr-xr-x root/root 16560 2021-08-16 11:46 ./usr/bin/extract_UG_EST
-rwxr-xr-x root/root 67164 2021-08-16 11:46 ./usr/bin/makesmat
-rwxr-xr-x root/root 67164 2021-08-16 11:46 ./usr/bin/maskred
-rwxr-xr-x root/root 18178 2021-08-16 11:46 ./usr/bin/prepare_data
-rwxr-xr-x root/root 67164 2021-08-16 11:46 ./usr/bin/winsegshuffle
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan/
-rw-r--r-- root/root 669 2021-08-16 11:46 ./usr/share/doc/estscan/README.test
-rw-r--r-- root/root 222 2021-08-16 11:46 ./usr/share/doc/estscan/changelog.Debian.armhf.gz
-rw-r--r-- root/root 626 2021-08-16 11:46 ./usr/share/doc/estscan/changelog.Debian.gz
-rw-r--r-- root/root 6100 2021-08-16 11:46 ./usr/share/doc/estscan/copyright
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan/examples/
-rw-r--r-- root/root 59182 2021-08-16 11:46 ./usr/share/doc/estscan/examples/Dr.smat
-rw-r--r-- root/root 204 2021-08-16 11:46 ./usr/share/doc/estscan/examples/sequence.fasta
-rw-r--r-- root/root 381 2021-08-16 11:46 ./usr/share/doc/estscan/run-unit-test
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/perl5/
-rw-r--r-- root/root 8714 2006-12-19 16:01 ./usr/share/perl5/build_model_utils.pl
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1500
Build-Time: 47
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 248
Job: estscan_3.0.3-6
Machine Architecture: armhf
Package: estscan
Package-Time: 354
Source-Version: 3.0.3-6
Space: 1500
Status: successful
Version: 3.0.3-6+b3
--------------------------------------------------------------------------------
Finished at 2022-10-28T12:04:13Z
Build needed 00:05:54, 1500k disc space