estscan →
3.0.3-6+b2 →
armhf → 2022-02-13 00:47:09
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| estscan 3.0.3-6+b2 (armhf) Sun, 13 Feb 2022 00:40:09 +0000 |
+==============================================================================+
Package: estscan
Version: 3.0.3-6+b2
Source Version: 3.0.3-6
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-bcf2a934-0dac-4105-8b77-e5b6e9cdef79' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.8 MB]
Fetched 12.8 MB in 15s (859 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'estscan' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/estscan.git
Please use:
git clone https://salsa.debian.org/med-team/estscan.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 61.4 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main estscan 3.0.3-6 (dsc) [1963 B]
Get:2 http://172.17.4.1/private bookworm-staging/main estscan 3.0.3-6 (tar) [46.4 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main estscan 3.0.3-6 (diff) [13.0 kB]
Fetched 61.4 kB in 0s (607 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/estscan-1EEiRy/estscan-3.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/estscan-1EEiRy' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-n2T0rh/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-n2T0rh/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-n2T0rh/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2866 B/s)
Reading package lists...
W: copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libperl5.32 netbase perl-modules-5.32 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14442 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), gfortran
Filtered Build-Depends: debhelper-compat (= 13), gfortran
dpkg-deb: building package 'sbuild-build-depends-estscan-dummy' in '/<<BUILDDIR>>/resolver-n2T0rh/apt_archive/sbuild-build-depends-estscan-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-estscan-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Sources [498 B]
Get:5 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Packages [575 B]
Fetched 2406 B in 1s (3156 B/s)
Reading package lists...
W: copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install estscan build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libperl5.32 netbase perl-modules-5.32
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-11 groff-base intltool-debian libarchive-zip-perl libdebhelper-perl
libelf1 libfile-stripnondeterminism-perl libgfortran-11-dev libgfortran5
libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc
libcoarrays-dev groff libtool-doc gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-11 groff-base intltool-debian libarchive-zip-perl libdebhelper-perl
libelf1 libfile-stripnondeterminism-perl libgfortran-11-dev libgfortran5
libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf
sbuild-build-depends-estscan-dummy
0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded.
Need to get 25.6 MB of archives.
After this operation, 90.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-n2T0rh/apt_archive ./ sbuild-build-depends-estscan-dummy 0.invalid.0 [868 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.0-2 [1356 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-14+rpi1 [235 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.2.0-14+rpi1 [280 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.2.0-14+rpi1 [7570 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.5.5-1) ...
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Setting up libmagic1:armhf (1:5.41-2) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.41-2) ...
Setting up autotools-dev (20220109.1) ...
Setting up libsigsegv2:armhf (2.14-1) ...
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Setting up libelf1:armhf (0.186-1) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up libgfortran-11-dev:armhf (11.2.0-14+rpi1) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up gfortran-11 (11.2.0-14+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-8) ...
Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.10.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.6) ...
Setting up sbuild-build-depends-estscan-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-5+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37.90.20220130-2+rpi2 dpkg-dev_1.21.1+rpi1 g++-11_11.2.0-14+rpi1 gcc-11_11.2.0-14+rpi1 libc6-dev_2.33-5+rpi1 libstdc++-11-dev_11.2.0-14+rpi1 libstdc++6_11.2.0-14+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.15 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.90.20220130-2+rpi2 binutils-arm-linux-gnueabihf_2.37.90.20220130-2+rpi2 binutils-common_2.37.90.20220130-2+rpi2 bsdextrautils_2.37.3-1 bsdutils_1:2.37.3-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-14+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3 dpkg_1.21.1+rpi1 dpkg-dev_1.21.1+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-14+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-14+rpi1 gcc-11-base_11.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:11.2.0-2+rpi1 gfortran-11_11.2.0-14+rpi1 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3 gpg_2.2.27-3 gpg-agent_2.2.27-3 gpg-wks-client_2.2.27-3 gpg-wks-server_2.2.27-3 gpgconf_2.2.27-3 gpgsm_2.2.27-3 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.15 libarchive-zip-perl_1.68-1 libasan6_11.2.0-14+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-14+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37.90.20220130-2+rpi2 libblkid1_2.37.3-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-5+rpi1 libc-dev-bin_2.33-5+rpi1 libc6_2.33-5+rpi1 libc6-dev_2.33-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-14+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.37.90.20220130-2+rpi2 libctf0_2.37.90.20220130-2+rpi2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdpkg-perl_1.21.1+rpi1 libelf1_0.186-1 libext2fs2_1.46.5-2 libfakeroot_1.27-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.2.0-14+rpi1 libgcc-s1_11.2.0-14+rpi1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgfortran-11-dev_11.2.0-14+rpi1 libgfortran5_11.2.0-14+rpi1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.3-4 libgomp1_11.2.0-14+rpi1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.3-1 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncursesw6_6.3-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libperl5.34_5.34.0-3 libpipeline1_1.5.5-1 libreadline8_8.1.2-1 libsasl2-2_2.1.27+dfsg2-3 libsasl2-modules-db_2.1.27+dfsg2-3 libseccomp2_2.5.3-2+rpi1 libselinux1_3.3-1 libsemanage-common_3.3-1 libsemanage2_3.3-1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.14-1 libsmartcols1_2.37.3-1 libsqlite3-0_3.37.2-2 libss2_1.46.5-2 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-14+rpi1 libstdc++6_11.2.0-14+rpi1 libsub-override-perl_0.09-2 libsystemd0_250.3-2+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_250.3-2+rpi1 libunistring2_1.0-1 libuuid1_2.37.3-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.11.1+dfsg1-1 logsave_1.46.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.10.0-2 mawk_1.3.4.20200120-3 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 passwd_1:4.11.1+dfsg1-1 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-estscan-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.3-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.9Z2mLRgV/trustedkeys.kbx': General error
gpgv: Signature made Mon Aug 16 11:48:09 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./estscan_3.0.3-6.dsc
dpkg-source: info: extracting estscan in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking estscan_3.0.3.orig.tar.gz
dpkg-source: info: unpacking estscan_3.0.3-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makfile.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.0.3-6+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-bcf2a934-0dac-4105-8b77-e5b6e9cdef79
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package estscan
dpkg-buildpackage: info: source version 3.0.3-6+b2
dpkg-buildpackage: info: source distribution bookworm-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
\rm -f *~ maskred makesmat estscan winsegshuffle *.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c maskred.c
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c makesmat.c
gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c estscan.c
gfortran -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c winsegshuffle.f
winsegshuffle.f:121:72:
121 | IF(J.GT.97.OR.J.LT.1) PAUSE
| 1
Warning: Deleted feature: PAUSE statement at (1)
estscan.c: In function 'Compute':
estscan.c:784:38: warning: variable 'tmpScore' set but not used [-Wunused-but-set-variable]
784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore;
| ^~~~~~~~
estscan.c:784:29: warning: variable 'tmpPrev' set but not used [-Wunused-but-set-variable]
784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore;
| ^~~~~~~
maskred.c:124:33: warning: 'bitValue' is static but used in inline function 'testBit' which is not static
124 | { return(bitField[index >> 3] & bitValue[index & 7]); }
| ^~~~~~~~
maskred.c:121:27: warning: 'bitValue' is static but used in inline function 'setBit' which is not static
121 | { bitField[index >> 3] |= bitValue[index & 7]; }
| ^~~~~~~~
maskred.c: In function 'mask_file':
maskred.c:203:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
203 | fgets(buf, 1024, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~
maskred.c:210:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
210 | fgets(buf, 1024, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~
At top level:
maskred.c:161:13: warning: 'printTuple' defined but not used [-Wunused-function]
161 | static void printTuple(unsigned long index, int len)
| ^~~~~~~~~~
makesmat.c: In function 'count_tuples':
makesmat.c:306:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
306 | fgets(buf, 1024, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~
makesmat.c:325:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
325 | fgets(buf, 1024, stdin);
| ^~~~~~~~~~~~~~~~~~~~~~~
gfortran -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o winsegshuffle winsegshuffle.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o maskred maskred.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o makesmat makesmat.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o estscan estscan.o -lm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/estscan/ -a
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
set -e ; \
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dwz: debian/estscan/usr/bin/estscan: DWARF compression not beneficial - old size 21513 new size 21677
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/estscan/usr/bin/winsegshuffle debian/estscan/usr/bin/maskred debian/estscan/usr/bin/estscan debian/estscan/usr/bin/makesmat were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'estscan' in '../estscan_3.0.3-6+b2_armhf.deb'.
dpkg-deb: building package 'estscan-dbgsym' in '../estscan-dbgsym_3.0.3-6+b2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../estscan_3.0.3-6+b2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../estscan_3.0.3-6+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-02-13T00:47:02Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
estscan_3.0.3-6+b2_armhf.changes:
---------------------------------
Format: 1.8
Date: Mon, 16 Aug 2021 17:16:42 +0530
Source: estscan (3.0.3-6)
Binary: estscan estscan-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 3.0.3-6+b2
Distribution: bookworm-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
estscan - ORF-independent detector of coding DNA sequences
Changes:
estscan (3.0.3-6+b2) bookworm-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
c88736613e3e34f6cf75e183c4ad2d5796044fda 58740 estscan-dbgsym_3.0.3-6+b2_armhf.deb
15e9c9bd309d1db8407c75184c36221d69329806 5360 estscan_3.0.3-6+b2_armhf.buildinfo
37312d09ece6cf6d302d7a990627fe2b0a91ffb3 50028 estscan_3.0.3-6+b2_armhf.deb
Checksums-Sha256:
2ed0828b1dd8233ad2802d168e069f59291afdb96616f3112d8b5a9022b4f572 58740 estscan-dbgsym_3.0.3-6+b2_armhf.deb
b67b93c19c2a4fd97e0539b21d41682840004ea34645c65f83d81cc39d763806 5360 estscan_3.0.3-6+b2_armhf.buildinfo
79fd04be00410a7db1046f136108c395ed18b2cc0d256efa5b94f8f263766e3c 50028 estscan_3.0.3-6+b2_armhf.deb
Files:
a01c2e1a8064734732c952f94e15136f 58740 debug optional estscan-dbgsym_3.0.3-6+b2_armhf.deb
07d8a66ee4272dafec59e8d55c9cb490 5360 science optional estscan_3.0.3-6+b2_armhf.buildinfo
e02dc493f1ce5f7a3b60579ad15526e8 50028 science optional estscan_3.0.3-6+b2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
estscan-dbgsym_3.0.3-6+b2_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 58740 bytes: control archive=748 bytes.
508 bytes, 12 lines control
511 bytes, 5 lines md5sums
Package: estscan-dbgsym
Source: estscan (3.0.3-6)
Version: 3.0.3-6+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 95
Depends: estscan (= 3.0.3-6+b2)
Section: debug
Priority: optional
Description: debug symbols for estscan
Build-Ids: 5c62589f7ea68fa47579a86552a67f59498ea65c 78271c734efc4e476a46ae7fb8abf84a8513a921 a477721321963af58f9aad32d0a1f65ac5e40250 b49f9169951436e8f011f7530f13b77107092803
drwxr-xr-x root/root 0 2021-08-16 11:46 ./
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/5c/
-rw-r--r-- root/root 11676 2021-08-16 11:46 ./usr/lib/debug/.build-id/5c/62589f7ea68fa47579a86552a67f59498ea65c.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root 10480 2021-08-16 11:46 ./usr/lib/debug/.build-id/78/271c734efc4e476a46ae7fb8abf84a8513a921.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/a4/
-rw-r--r-- root/root 18384 2021-08-16 11:46 ./usr/lib/debug/.build-id/a4/77721321963af58f9aad32d0a1f65ac5e40250.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/b4/
-rw-r--r-- root/root 36216 2021-08-16 11:46 ./usr/lib/debug/.build-id/b4/9f9169951436e8f011f7530f13b77107092803.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 2376 2021-08-16 11:46 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/estscan.debug
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan-dbgsym -> estscan
estscan_3.0.3-6+b2_armhf.deb
----------------------------
new Debian package, version 2.0.
size 50028 bytes: control archive=1516 bytes.
1317 bytes, 25 lines control
1016 bytes, 16 lines md5sums
Package: estscan
Source: estscan (3.0.3-6)
Version: 3.0.3-6+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 226
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgfortran5 (>= 8), perl:any
Section: science
Priority: optional
Homepage: http://estscan.sourceforge.net/
Description: ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences,
even if they are of low quality. ESTScan will also detect and correct
sequencing errors that lead to frameshifts. ESTScan is not a gene
prediction program , nor is it an open reading frame detector. In fact,
its strength lies in the fact that it does not require an open reading
frame to detect a coding region. As a result, the program may miss a
few translated amino acids at either the N or the C terminus, but will
detect coding regions with high selectivity and sensitivity.
.
ESTScan takes advantages of the bias in hexanucleotide usage found in
coding regions relative to non-coding regions. This bias is formalized
as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
(HMM). Additionally, the HMM of ESTScan has been extended to allows
insertions and deletions when these improve the coding region statistics.
drwxr-xr-x root/root 0 2021-08-16 11:46 ./
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/bin/
-rwxr-xr-x root/root 26068 2021-08-16 11:46 ./usr/bin/estscan
-rwxr-xr-x root/root 25411 2021-08-16 11:46 ./usr/bin/evaluate_model
-rwxr-xr-x root/root 18833 2021-08-16 11:46 ./usr/bin/extract_EST
-rwxr-xr-x root/root 16560 2021-08-16 11:46 ./usr/bin/extract_UG_EST
-rwxr-xr-x root/root 13916 2021-08-16 11:46 ./usr/bin/makesmat
-rwxr-xr-x root/root 9820 2021-08-16 11:46 ./usr/bin/maskred
-rwxr-xr-x root/root 18178 2021-08-16 11:46 ./usr/bin/prepare_data
-rwxr-xr-x root/root 9820 2021-08-16 11:46 ./usr/bin/winsegshuffle
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan/
-rw-r--r-- root/root 669 2021-08-16 11:46 ./usr/share/doc/estscan/README.test
-rw-r--r-- root/root 223 2021-08-16 11:46 ./usr/share/doc/estscan/changelog.Debian.armhf.gz
-rw-r--r-- root/root 823 2021-08-16 11:46 ./usr/share/doc/estscan/changelog.Debian.gz
-rw-r--r-- root/root 6100 2021-08-16 11:46 ./usr/share/doc/estscan/copyright
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan/examples/
-rw-r--r-- root/root 59182 2021-08-16 11:46 ./usr/share/doc/estscan/examples/Dr.smat
-rw-r--r-- root/root 204 2021-08-16 11:46 ./usr/share/doc/estscan/examples/sequence.fasta
-rw-r--r-- root/root 381 2021-08-16 11:46 ./usr/share/doc/estscan/run-unit-test
drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/perl5/
-rw-r--r-- root/root 8714 2006-12-19 16:01 ./usr/share/perl5/build_model_utils.pl
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1272
Build-Time: 43
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 331
Job: estscan_3.0.3-6
Machine Architecture: armhf
Package: estscan
Package-Time: 413
Source-Version: 3.0.3-6
Space: 1272
Status: successful
Version: 3.0.3-6+b2
--------------------------------------------------------------------------------
Finished at 2022-02-13T00:47:02Z
Build needed 00:06:53, 1272k disc space