estscan →
3.0.3-3+b3 →
armhf → 2020-06-12 11:34:37
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| estscan 3.0.3-3+b3 (armhf) Fri, 12 Jun 2020 11:31:14 +0000 |
+==============================================================================+
Package: estscan
Version: 3.0.3-3+b3
Source Version: 3.0.3-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-ad0ddcae-109f-4932-9a31-f5c8c01a1163' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 9s (2845 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'estscan' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/estscan.git
Please use:
git clone https://salsa.debian.org/med-team/estscan.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 52.9 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main estscan 3.0.3-3 (dsc) [1928 B]
Get:2 http://172.17.0.1/private bullseye-staging/main estscan 3.0.3-3 (tar) [46.4 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main estscan 3.0.3-3 (diff) [4512 B]
Fetched 52.9 kB in 0s (600 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/estscan-Us6DXO/estscan-3.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/estscan-Us6DXO' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3Cw86H/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3Cw86H/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3Cw86H/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ Packages [429 B]
Fetched 2105 B in 0s (9726 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (65.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12233 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), gfortran
Filtered Build-Depends: debhelper (>= 11~), gfortran
dpkg-deb: building package 'sbuild-build-depends-estscan-dummy' in '/<<BUILDDIR>>/resolver-3Cw86H/apt_archive/sbuild-build-depends-estscan-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-estscan-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ Sources [497 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ Packages [576 B]
Fetched 2406 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install estscan build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-9 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++-9 gcc-10-base gcc-9
gcc-9-base gettext gettext-base gfortran gfortran-9 groff-base
intltool-debian libarchive-zip-perl libasan5 libatomic1 libbsd0 libcc1-0
libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl
libgcc-9-dev libgcc-s1 libgfortran-9-dev libgfortran5 libglib2.0-0 libgomp1
libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libstdc++-9-dev
libstdc++6 libsub-override-perl libtinfo5 libtool libubsan1 libuchardet0
libxml2 m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-9-locales dh-make gcc-9-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-9-doc libcoarrays-dev groff
libstdc++-9-doc libtool-doc gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following packages will be REMOVED:
libgcc1*
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-9 groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran-9-dev
libgfortran5 libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
man-db po-debconf sbuild-build-depends-estscan-dummy sensible-utils
The following packages will be upgraded:
cpp-9 g++-9 gcc-10-base gcc-9 gcc-9-base libasan5 libatomic1 libcc1-0
libgcc-9-dev libgcc-s1 libgomp1 libstdc++-9-dev libstdc++6 libubsan1
14 upgraded, 40 newly installed, 1 to remove and 24 not upgraded.
Need to get 54.8 MB of archives.
After this operation, 94.1 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3Cw86H/apt_archive ./ sbuild-build-depends-estscan-dummy 0.invalid.0 [864 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.1.0-3+rpi1 [8160 B]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.1.0-3+rpi1 [115 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.1.0-3+rpi1 [83.0 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.1.0-3+rpi1 [197 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.1.0-3+rpi1 [36.1 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.1.0-3+rpi1 [31.7 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.1.0-3+rpi1 [408 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.2-1 [1269 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf g++-9 armhf 9.3.0-13+rpi1 [8225 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf gcc-9 armhf 9.3.0-13+rpi1 [7731 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf cpp-9 armhf 9.3.0-13+rpi1 [7464 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libasan5 armhf 9.3.0-13+rpi1 [348 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-9-dev armhf 9.3.0-13+rpi1 [1713 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libgcc-9-dev armhf 9.3.0-13+rpi1 [639 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.3.0-13+rpi1 [197 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.1 [187 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.1-1 [14.9 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.3-1 [1159 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-2 [8286 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5+b1 [593 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.1 [1012 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-3+rpi1 [231 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.3.0-13+rpi1 [278 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.3.0-13+rpi1 [8108 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3.1+rpi1 [1440 B]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking dh-strip-nondeterminism (1.8.1-1) ...
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Unpacking dwz (0.13-5) ...
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Unpacking libicu67:armhf (67.1-2) ...
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Unpacking gfortran (4:9.2.1-3.1+rpi1) ...
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Unpacking sbuild-build-depends-estscan-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libicu67:armhf (67.1-2) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.3-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.1) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libgomp1:armhf (10.1.0-3+rpi1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libatomic1:armhf (10.1.0-3+rpi1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libgfortran5:armhf (10.1.0-3+rpi1) ...
Setting up libubsan1:armhf (10.1.0-3+rpi1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-5+b1) ...
Setting up libcc1-0:armhf (10.1.0-3+rpi1) ...
Setting up gcc-9-base:armhf (9.3.0-13+rpi1) ...
Setting up libfile-stripnondeterminism-perl (1.8.1-1) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up libasan5:armhf (9.3.0-13+rpi1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.8.1-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up cpp-9 (9.3.0-13+rpi1) ...
Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libgcc-9-dev:armhf (9.3.0-13+rpi1) ...
Setting up gcc-9 (9.3.0-13+rpi1) ...
Setting up libstdc++-9-dev:armhf (9.3.0-13+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up libgfortran-9-dev:armhf (9.3.0-13+rpi1) ...
Setting up g++-9 (9.3.0-13+rpi1) ...
Setting up gfortran-9 (9.3.0-13+rpi1) ...
Setting up gfortran (4:9.2.1-3.1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.1) ...
Setting up sbuild-build-depends-estscan-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-13+rpi1 gcc-9_9.3.0-13+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.4 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-5 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-13+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-5 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-13+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-3+rpi1 gcc-9_9.3.0-13+rpi1 gcc-9-base_9.3.0-13+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:9.2.1-3.1+rpi1 gfortran-9_9.3.0-13+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.4 libarchive-zip-perl_1.68-1 libasan5_9.3.0-13+rpi1 libassuan0_2.5.3-7 libatomic1_10.1.0-3+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-8+rpi1 libblkid1_2.35.1-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.34-2 libcap2-bin_1:2.34-2 libcc1-0_10.1.0-3+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8+rpi1 libctf0_2.34-8+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-5 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.1-1 libgcc-9-dev_9.3.0-13+rpi1 libgcc-s1_10.1.0-3+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.3.0-13+rpi1 libgfortran5_10.1.0-3+rpi1 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-3+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu67_67.1-2 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-5 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.34-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.1-5 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-3+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-3+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_245.5-3+rpi1 libunistring2_0.9.10-2 libuuid1_2.35.1-5 libxml2_2.9.10+dfsg-5+b1 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.2-1 mawk_1.3.4.20200120-2 mount_2.35.1-5 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-estscan-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.1-5 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Dec 18 07:15:12 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./estscan_3.0.3-3.dsc
dpkg-source: info: extracting estscan in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking estscan_3.0.3.orig.tar.gz
dpkg-source: info: unpacking estscan_3.0.3-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makfile.patch
dpkg-source: info: applying ld-as-needed.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.0.3-3+b3
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-ad0ddcae-109f-4932-9a31-f5c8c01a1163
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package estscan
dpkg-buildpackage: info: source version 3.0.3-3+b3
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
\rm -f *~ maskred makesmat estscan winsegshuffle *.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c maskred.c
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c makesmat.c
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c estscan.c
gfortran -O2 -g -c winsegshuffle.f
winsegshuffle.f:121:72:
121 | IF(J.GT.97.OR.J.LT.1) PAUSE
| 1
Warning: Deleted feature: PAUSE statement at (1)
maskred.c:124:33: warning: 'bitValue' is static but used in inline function 'testBit' which is not static
124 | { return(bitField[index >> 3] & bitValue[index & 7]); }
| ^~~~~~~~
maskred.c:121:27: warning: 'bitValue' is static but used in inline function 'setBit' which is not static
121 | { bitField[index >> 3] |= bitValue[index & 7]; }
| ^~~~~~~~
estscan.c: In function 'Compute':
estscan.c:784:38: warning: variable 'tmpScore' set but not used [-Wunused-but-set-variable]
784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore;
| ^~~~~~~~
estscan.c:784:29: warning: variable 'tmpPrev' set but not used [-Wunused-but-set-variable]
784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore;
| ^~~~~~~
maskred.c:161:13: warning: 'printTuple' defined but not used [-Wunused-function]
161 | static void printTuple(unsigned long index, int len)
| ^~~~~~~~~~
gfortran -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o winsegshuffle winsegshuffle.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o maskred maskred.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o makesmat makesmat.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o estscan estscan.o -lm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/estscan/usr/bin/estscan debian/estscan/usr/bin/maskred debian/estscan/usr/bin/makesmat were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'estscan' in '../estscan_3.0.3-3+b3_armhf.deb'.
dpkg-deb: building package 'estscan-dbgsym' in '../estscan-dbgsym_3.0.3-3+b3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../estscan_3.0.3-3+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-06-12T11:34:35Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
estscan_3.0.3-3+b3_armhf.changes:
---------------------------------
Format: 1.8
Date: Tue, 18 Dec 2018 08:12:32 +0100
Source: estscan (3.0.3-3)
Binary: estscan estscan-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 3.0.3-3+b3
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
estscan - ORF-independent detector of coding DNA sequences
Changes:
estscan (3.0.3-3+b3) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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8c7d706a7bddd05fff5a7ad03f41487af689d025 4974 estscan_3.0.3-3+b3_armhf.buildinfo
cf914f53e50771adf1494603e82997fc91b9a33c 41252 estscan_3.0.3-3+b3_armhf.deb
Checksums-Sha256:
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bb36311e53684d5bc16f9de5f30dff6ac8911d3d65d77a573f905b926e9856ba 4974 estscan_3.0.3-3+b3_armhf.buildinfo
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Files:
87dfbbe1af2f3c24a09d6d86e8891d0a 50820 debug optional estscan-dbgsym_3.0.3-3+b3_armhf.deb
7c34c004abdbceb41a4d26d7e4825b6e 4974 science optional estscan_3.0.3-3+b3_armhf.buildinfo
26e343b87319540bfe0faa7d7d26e99d 41252 science optional estscan_3.0.3-3+b3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
estscan-dbgsym_3.0.3-3+b3_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 50820 bytes: control archive=704 bytes.
508 bytes, 12 lines control
424 bytes, 4 lines md5sums
Package: estscan-dbgsym
Source: estscan (3.0.3-3)
Version: 3.0.3-3+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 84
Depends: estscan (= 3.0.3-3+b3)
Section: debug
Priority: optional
Description: debug symbols for estscan
Build-Ids: 13585a6414b11f822e8c87aa4db9b5d0f7a29030 90f01b6835a8fa641f3abdb2bb5aecab883e78a0 9f13b746f547d5697979f35b4fd17e89dddc1bec fa85abe33e88d6ad4235325abe3fa618ca53f286
drwxr-xr-x root/root 0 2018-12-18 07:12 ./
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/13/
-rw-r--r-- root/root 12252 2018-12-18 07:12 ./usr/lib/debug/.build-id/13/585a6414b11f822e8c87aa4db9b5d0f7a29030.debug
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/90/
-rw-r--r-- root/root 31104 2018-12-18 07:12 ./usr/lib/debug/.build-id/90/f01b6835a8fa641f3abdb2bb5aecab883e78a0.debug
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/9f/
-rw-r--r-- root/root 17464 2018-12-18 07:12 ./usr/lib/debug/.build-id/9f/13b746f547d5697979f35b4fd17e89dddc1bec.debug
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/fa/
-rw-r--r-- root/root 10140 2018-12-18 07:12 ./usr/lib/debug/.build-id/fa/85abe33e88d6ad4235325abe3fa618ca53f286.debug
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-12-18 07:12 ./usr/share/doc/estscan-dbgsym -> estscan
estscan_3.0.3-3+b3_armhf.deb
----------------------------
new Debian package, version 2.0.
size 41252 bytes: control archive=1384 bytes.
1317 bytes, 25 lines control
725 bytes, 12 lines md5sums
Package: estscan
Source: estscan (3.0.3-3)
Version: 3.0.3-3+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 164
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgfortran5 (>= 8), perl:any
Section: science
Priority: optional
Homepage: http://estscan.sourceforge.net/
Description: ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences,
even if they are of low quality. ESTScan will also detect and correct
sequencing errors that lead to frameshifts. ESTScan is not a gene
prediction program , nor is it an open reading frame detector. In fact,
its strength lies in the fact that it does not require an open reading
frame to detect a coding region. As a result, the program may miss a
few translated amino acids at either the N or the C terminus, but will
detect coding regions with high selectivity and sensitivity.
.
ESTScan takes advantages of the bias in hexanucleotide usage found in
coding regions relative to non-coding regions. This bias is formalized
as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
(HMM). Additionally, the HMM of ESTScan has been extended to allows
insertions and deletions when these improve the coding region statistics.
drwxr-xr-x root/root 0 2018-12-18 07:12 ./
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/bin/
-rwxr-xr-x root/root 26068 2018-12-18 07:12 ./usr/bin/estscan
-rwxr-xr-x root/root 25411 2018-12-18 07:12 ./usr/bin/evaluate_model
-rwxr-xr-x root/root 18833 2018-12-18 07:12 ./usr/bin/extract_EST
-rwxr-xr-x root/root 16560 2018-12-18 07:12 ./usr/bin/extract_UG_EST
-rwxr-xr-x root/root 13780 2018-12-18 07:12 ./usr/bin/makesmat
-rwxr-xr-x root/root 9684 2018-12-18 07:12 ./usr/bin/maskred
-rwxr-xr-x root/root 18178 2018-12-18 07:12 ./usr/bin/prepare_data
-rwxr-xr-x root/root 9632 2018-12-18 07:12 ./usr/bin/winsegshuffle
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/doc/estscan/
-rw-r--r-- root/root 219 2018-12-18 07:12 ./usr/share/doc/estscan/changelog.Debian.armhf.gz
-rw-r--r-- root/root 432 2018-12-18 07:12 ./usr/share/doc/estscan/changelog.Debian.gz
-rw-r--r-- root/root 5478 2018-12-18 07:12 ./usr/share/doc/estscan/copyright
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/perl5/
-rw-r--r-- root/root 8714 2006-12-19 16:01 ./usr/share/perl5/build_model_utils.pl
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 1100
Build-Time: 12
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 173
Job: estscan_3.0.3-3
Machine Architecture: armhf
Package: estscan
Package-Time: 201
Source-Version: 3.0.3-3
Space: 1100
Status: successful
Version: 3.0.3-3+b3
--------------------------------------------------------------------------------
Finished at 2020-06-12T11:34:35Z
Build needed 00:03:21, 1100k disk space