estscan →
3.0.3-3+b2 →
armhf → 2020-05-28 23:40:59
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| estscan 3.0.3-3+b2 (armhf) Thu, 28 May 2020 23:32:32 +0000 |
+==============================================================================+
Package: estscan
Version: 3.0.3-3+b2
Source Version: 3.0.3-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-c714add4-39e3-43ca-883a-a148569f0074' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 25s (992 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'estscan' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/estscan.git
Please use:
git clone https://salsa.debian.org/med-team/estscan.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 52.9 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main estscan 3.0.3-3 (dsc) [1928 B]
Get:2 http://172.17.0.1/private bullseye-staging/main estscan 3.0.3-3 (tar) [46.4 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main estscan 3.0.3-3 (diff) [4512 B]
Fetched 52.9 kB in 0s (314 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/estscan-XdXnl9/estscan-3.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/estscan-XdXnl9' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-XBrOkT/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-XBrOkT/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-XBrOkT/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2674 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
10 not fully installed or removed.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.5 kB/s)
Setting up libudev1:armhf (245.5-3+rpi1) ...
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12233 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up libgcc1 (1:10.1.0-1+rpi1) ...
Setting up libgomp1:armhf (10.1.0-1+rpi1) ...
Setting up libatomic1:armhf (10.1.0-1+rpi1) ...
Setting up libfdisk1:armhf (2.35.1-5) ...
Setting up libubsan1:armhf (10.1.0-1+rpi1) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up libc-dev-bin (2.30-8+rpi1) ...
Setting up libcc1-0:armhf (10.1.0-1+rpi1) ...
Setting up fdisk (2.35.1-5) ...
Setting up libc6-dev:armhf (2.30-8+rpi1) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), gfortran
Filtered Build-Depends: debhelper (>= 11~), gfortran
dpkg-deb: building package 'sbuild-build-depends-estscan-dummy' in '/<<BUILDDIR>>/resolver-XBrOkT/apt_archive/sbuild-build-depends-estscan-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-estscan-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ Sources [497 B]
Get:5 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ Packages [574 B]
Fetched 2404 B in 1s (3134 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install estscan build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-9 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++-9 gcc-9 gcc-9-base
gettext gettext-base gfortran gfortran-9 groff-base intltool-debian
libarchive-zip-perl libasan5 libbsd0 libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgcc-9-dev libgfortran-9-dev libgfortran5
libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libstdc++-9-dev libsub-override-perl libtinfo5 libtool libuchardet0 libxml2
m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-9-locales dh-make gcc-9-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-9-doc libcoarrays-dev groff
libstdc++-9-doc libtool-doc gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-9 groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran-9-dev
libgfortran5 libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4
man-db po-debconf sbuild-build-depends-estscan-dummy sensible-utils
The following packages will be upgraded:
cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libgcc-9-dev libstdc++-9-dev
7 upgraded, 40 newly installed, 0 to remove and 22 not upgraded.
Need to get 53.7 MB of archives.
After this operation, 92.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-XBrOkT/apt_archive ./ sbuild-build-depends-estscan-dummy 0.invalid.0 [860 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libasan5 armhf 9.3.0-13+rpi1 [348 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf g++-9 armhf 9.3.0-13+rpi1 [8225 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gcc-9 armhf 9.3.0-13+rpi1 [7731 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-9-dev armhf 9.3.0-13+rpi1 [1713 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libgcc-9-dev armhf 9.3.0-13+rpi1 [639 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf cpp-9 armhf 9.3.0-13+rpi1 [7464 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.3.0-13+rpi1 [197 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.1 [187 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.1-1 [14.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.1 [1012 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-1+rpi1 [232 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.3.0-13+rpi1 [278 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.3.0-13+rpi1 [8108 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3.1+rpi1 [1440 B]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libgfortran5:armhf (10.1.0-1+rpi1) ...
Selecting previously unselected package libgfortran-9-dev:armhf.
Preparing to unpack .../43-libgfortran-9-dev_9.3.0-13+rpi1_armhf.deb ...
Unpacking libgfortran-9-dev:armhf (9.3.0-13+rpi1) ...
Selecting previously unselected package gfortran-9.
Preparing to unpack .../44-gfortran-9_9.3.0-13+rpi1_armhf.deb ...
Unpacking gfortran-9 (9.3.0-13+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../45-gfortran_4%3a9.2.1-3.1+rpi1_armhf.deb ...
Unpacking gfortran (4:9.2.1-3.1+rpi1) ...
Selecting previously unselected package sbuild-build-depends-estscan-dummy.
Preparing to unpack .../46-sbuild-build-depends-estscan-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-estscan-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.2-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.1) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libicu63:armhf (63.2-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libgfortran5:armhf (10.1.0-1+rpi1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-5) ...
Setting up gcc-9-base:armhf (9.3.0-13+rpi1) ...
Setting up libfile-stripnondeterminism-perl (1.8.1-1) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up libasan5:armhf (9.3.0-13+rpi1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.8.1-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up cpp-9 (9.3.0-13+rpi1) ...
Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libgcc-9-dev:armhf (9.3.0-13+rpi1) ...
Setting up gcc-9 (9.3.0-13+rpi1) ...
Setting up libstdc++-9-dev:armhf (9.3.0-13+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up libgfortran-9-dev:armhf (9.3.0-13+rpi1) ...
Setting up g++-9 (9.3.0-13+rpi1) ...
Setting up gfortran-9 (9.3.0-13+rpi1) ...
Setting up gfortran (4:9.2.1-3.1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.1) ...
Setting up sbuild-build-depends-estscan-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-13+rpi1 gcc-9_9.3.0-13+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.0 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-5 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-13+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-5 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-13+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-1+rpi1 gcc-9_9.3.0-13+rpi1 gcc-9-base_9.3.0-13+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran_4:9.2.1-3.1+rpi1 gfortran-9_9.3.0-13+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.0 libarchive-zip-perl_1.68-1 libasan5_9.3.0-13+rpi1 libassuan0_2.5.3-7 libatomic1_10.1.0-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-5+rpi1 libblkid1_2.35.1-5 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.33-1 libcap2-bin_1:2.33-1 libcc1-0_10.1.0-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13.1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-5 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.1-1 libgcc-9-dev_9.3.0-13+rpi1 libgcc-s1_10.1.0-1+rpi1 libgcc1_1:10.1.0-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.3.0-13+rpi1 libgfortran5_10.1.0-1+rpi1 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-1+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-5 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.33-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.1-5 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-3+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-1+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-3+rpi1 libunistring2_0.9.10-2 libuuid1_2.35.1-5 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.35.1-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-estscan-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.1-5 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Dec 18 07:15:12 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./estscan_3.0.3-3.dsc
dpkg-source: info: extracting estscan in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking estscan_3.0.3.orig.tar.gz
dpkg-source: info: unpacking estscan_3.0.3-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makfile.patch
dpkg-source: info: applying ld-as-needed.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.0.3-3+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-c714add4-39e3-43ca-883a-a148569f0074
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package estscan
dpkg-buildpackage: info: source version 3.0.3-3+b2
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
\rm -f *~ maskred makesmat estscan winsegshuffle *.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c maskred.c
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c makesmat.c
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -c estscan.c
gfortran -O2 -g -c winsegshuffle.f
winsegshuffle.f:121:72:
121 | IF(J.GT.97.OR.J.LT.1) PAUSE
| 1
Warning: Deleted feature: PAUSE statement at (1)
estscan.c: In function 'Compute':
estscan.c:784:38: warning: variable 'tmpScore' set but not used [-Wunused-but-set-variable]
784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore;
| ^~~~~~~~
estscan.c:784:29: warning: variable 'tmpPrev' set but not used [-Wunused-but-set-variable]
784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore;
| ^~~~~~~
maskred.c:124:33: warning: 'bitValue' is static but used in inline function 'testBit' which is not static
124 | { return(bitField[index >> 3] & bitValue[index & 7]); }
| ^~~~~~~~
maskred.c:121:27: warning: 'bitValue' is static but used in inline function 'setBit' which is not static
121 | { bitField[index >> 3] |= bitValue[index & 7]; }
| ^~~~~~~~
maskred.c:161:13: warning: 'printTuple' defined but not used [-Wunused-function]
161 | static void printTuple(unsigned long index, int len)
| ^~~~~~~~~~
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o maskred maskred.o -lm
gfortran -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o winsegshuffle winsegshuffle.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o makesmat makesmat.o -lm
gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o estscan estscan.o -lm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/estscan/usr/bin/makesmat debian/estscan/usr/bin/estscan debian/estscan/usr/bin/maskred were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'estscan-dbgsym' in '../estscan-dbgsym_3.0.3-3+b2_armhf.deb'.
dpkg-deb: building package 'estscan' in '../estscan_3.0.3-3+b2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../estscan_3.0.3-3+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-05-28T23:40:52Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
estscan_3.0.3-3+b2_armhf.changes:
---------------------------------
Format: 1.8
Date: Tue, 18 Dec 2018 08:12:32 +0100
Source: estscan (3.0.3-3)
Binary: estscan estscan-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 3.0.3-3+b2
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
estscan - ORF-independent detector of coding DNA sequences
Changes:
estscan (3.0.3-3+b2) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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7af3e70ca2a47fb4bae198013aacf4a9a92b4ebf 5003 estscan_3.0.3-3+b2_armhf.buildinfo
caecf418b278f8e03749a1c6c4d6c3c5ece09905 41248 estscan_3.0.3-3+b2_armhf.deb
Checksums-Sha256:
56be8668d61616532c4c9dd8819ec308542d63c1f0de45cdefa5521ed22e1c2b 50828 estscan-dbgsym_3.0.3-3+b2_armhf.deb
d979615db66c2dc560ae3706324ca8b5511cfcac4ddad9ac4d02f51b718bb308 5003 estscan_3.0.3-3+b2_armhf.buildinfo
7065cdeb475fa43abfc9a2dee6a724f124486b304130efc8e430395541ef8927 41248 estscan_3.0.3-3+b2_armhf.deb
Files:
eb1f37892ccf7ff293d461821dbfdcfd 50828 debug optional estscan-dbgsym_3.0.3-3+b2_armhf.deb
1eeb4db3526e41edbce38d549ec248c4 5003 science optional estscan_3.0.3-3+b2_armhf.buildinfo
fdce79769db424f42ec24b7b560dc5ea 41248 science optional estscan_3.0.3-3+b2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
estscan-dbgsym_3.0.3-3+b2_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 50828 bytes: control archive=708 bytes.
508 bytes, 12 lines control
424 bytes, 4 lines md5sums
Package: estscan-dbgsym
Source: estscan (3.0.3-3)
Version: 3.0.3-3+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 84
Depends: estscan (= 3.0.3-3+b2)
Section: debug
Priority: optional
Description: debug symbols for estscan
Build-Ids: 13585a6414b11f822e8c87aa4db9b5d0f7a29030 86e2848610668dcda486760b2949a2eea9d6d0e1 90f01b6835a8fa641f3abdb2bb5aecab883e78a0 9f13b746f547d5697979f35b4fd17e89dddc1bec
drwxr-xr-x root/root 0 2018-12-18 07:12 ./
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/13/
-rw-r--r-- root/root 12252 2018-12-18 07:12 ./usr/lib/debug/.build-id/13/585a6414b11f822e8c87aa4db9b5d0f7a29030.debug
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/86/
-rw-r--r-- root/root 10140 2018-12-18 07:12 ./usr/lib/debug/.build-id/86/e2848610668dcda486760b2949a2eea9d6d0e1.debug
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/90/
-rw-r--r-- root/root 31104 2018-12-18 07:12 ./usr/lib/debug/.build-id/90/f01b6835a8fa641f3abdb2bb5aecab883e78a0.debug
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/lib/debug/.build-id/9f/
-rw-r--r-- root/root 17464 2018-12-18 07:12 ./usr/lib/debug/.build-id/9f/13b746f547d5697979f35b4fd17e89dddc1bec.debug
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-12-18 07:12 ./usr/share/doc/estscan-dbgsym -> estscan
estscan_3.0.3-3+b2_armhf.deb
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new Debian package, version 2.0.
size 41248 bytes: control archive=1384 bytes.
1317 bytes, 25 lines control
725 bytes, 12 lines md5sums
Package: estscan
Source: estscan (3.0.3-3)
Version: 3.0.3-3+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 164
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgfortran5 (>= 8), perl:any
Section: science
Priority: optional
Homepage: http://estscan.sourceforge.net/
Description: ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences,
even if they are of low quality. ESTScan will also detect and correct
sequencing errors that lead to frameshifts. ESTScan is not a gene
prediction program , nor is it an open reading frame detector. In fact,
its strength lies in the fact that it does not require an open reading
frame to detect a coding region. As a result, the program may miss a
few translated amino acids at either the N or the C terminus, but will
detect coding regions with high selectivity and sensitivity.
.
ESTScan takes advantages of the bias in hexanucleotide usage found in
coding regions relative to non-coding regions. This bias is formalized
as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
(HMM). Additionally, the HMM of ESTScan has been extended to allows
insertions and deletions when these improve the coding region statistics.
drwxr-xr-x root/root 0 2018-12-18 07:12 ./
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/bin/
-rwxr-xr-x root/root 26068 2018-12-18 07:12 ./usr/bin/estscan
-rwxr-xr-x root/root 25411 2018-12-18 07:12 ./usr/bin/evaluate_model
-rwxr-xr-x root/root 18833 2018-12-18 07:12 ./usr/bin/extract_EST
-rwxr-xr-x root/root 16560 2018-12-18 07:12 ./usr/bin/extract_UG_EST
-rwxr-xr-x root/root 13780 2018-12-18 07:12 ./usr/bin/makesmat
-rwxr-xr-x root/root 9684 2018-12-18 07:12 ./usr/bin/maskred
-rwxr-xr-x root/root 18178 2018-12-18 07:12 ./usr/bin/prepare_data
-rwxr-xr-x root/root 9632 2018-12-18 07:12 ./usr/bin/winsegshuffle
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/doc/estscan/
-rw-r--r-- root/root 220 2018-12-18 07:12 ./usr/share/doc/estscan/changelog.Debian.armhf.gz
-rw-r--r-- root/root 432 2018-12-18 07:12 ./usr/share/doc/estscan/changelog.Debian.gz
-rw-r--r-- root/root 5478 2018-12-18 07:12 ./usr/share/doc/estscan/copyright
drwxr-xr-x root/root 0 2018-12-18 07:12 ./usr/share/perl5/
-rw-r--r-- root/root 8714 2006-12-19 16:01 ./usr/share/perl5/build_model_utils.pl
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Build Architecture: armhf
Build-Space: 1104
Build-Time: 38
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 411
Job: estscan_3.0.3-3
Machine Architecture: armhf
Package: estscan
Package-Time: 500
Source-Version: 3.0.3-3
Space: 1104
Status: successful
Version: 3.0.3-3+b2
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Finished at 2020-05-28T23:40:52Z
Build needed 00:08:20, 1104k disc space