estscan →
3.0.3-2 →
armhf → 2018-12-13 06:01:11
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| estscan 3.0.3-2 (armhf) Thu, 13 Dec 2018 05:54:40 +0000 |
+==============================================================================+
Package: estscan
Version: 3.0.3-2
Source Version: 3.0.3-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-938b9a6e-2c34-4397-9322-ab97b79e8f0a' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.3 MB in 32s (760 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'estscan' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/estscan.git
Please use:
git clone https://salsa.debian.org/med-team/estscan.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 52.4 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main estscan 3.0.3-2 (dsc) [1931 B]
Get:2 http://172.17.0.1/private buster-staging/main estscan 3.0.3-2 (tar) [46.4 kB]
Get:3 http://172.17.0.1/private buster-staging/main estscan 3.0.3-2 (diff) [4016 B]
Fetched 52.4 kB in 0s (263 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/estscan-HIv70u/estscan-3.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/estscan-HIv70u' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0QfdMw/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-0QfdMw/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-0QfdMw/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ Packages [429 B]
Fetched 2105 B in 1s (2929 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15783 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), gfortran
Filtered Build-Depends: debhelper (>= 10), gfortran
dpkg-deb: building package 'sbuild-build-depends-estscan-dummy' in '/<<BUILDDIR>>/resolver-0QfdMw/apt_archive/sbuild-build-depends-estscan-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-estscan-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ Sources [494 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ Packages [573 B]
Fetched 2400 B in 1s (3282 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install estscan build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-8 groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libelf1 libfile-stripnondeterminism-perl libgfortran-8-dev libgfortran5
libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libtool libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff libtool-doc gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-8 groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libelf1 libfile-stripnondeterminism-perl libgfortran-8-dev libgfortran5
libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libtool libxml2 m4 man-db po-debconf sbuild-build-depends-estscan-dummy
0 upgraded, 35 newly installed, 0 to remove and 5 not upgraded.
Need to get 24.1 MB/24.3 MB of archives.
After this operation, 86.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0QfdMw/apt_archive ./ sbuild-build-depends-estscan-dummy 0.invalid.0 [860 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.0.0-1 [12.5 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-9+rpi1 [205 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-9+rpi1 [248 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-9+rpi1 [5812 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 24.1 MB in 7s (3547 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 15783 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.9.1-1_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../01-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ...
Unpacking groff-base (1.22.3-10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.5.0-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.0-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.8.4-3_armhf.deb ...
Unpacking man-db (2.8.4-3) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.34-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../06-libmagic1_1%3a5.34-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.34-2) ...
Selecting previously unselected package file.
Preparing to unpack .../07-file_1%3a5.34-2_armhf.deb ...
Unpacking file (1:5.34-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../08-gettext-base_0.19.8.1-9_armhf.deb ...
Unpacking gettext-base (0.19.8.1-9) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../09-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.18-2_armhf.deb ...
Unpacking m4 (1.4.18-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.19.8.1-9_all.deb ...
Unpacking autopoint (0.19.8.1-9) ...
Selecting previously unselected package libtool.
Preparing to unpack .../15-libtool_2.4.6-6_all.deb ...
Unpacking libtool (2.4.6-6) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../16-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../17-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.0.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.0.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../19-dh-strip-nondeterminism_1.0.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.0.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../20-libelf1_0.170-0.5_armhf.deb ...
Unpacking libelf1:armhf (0.170-0.5) ...
Selecting previously unselected package dwz.
Preparing to unpack .../21-dwz_0.12-2_armhf.deb ...
Unpacking dwz (0.12-2) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../22-libglib2.0-0_2.58.1-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.58.1-2) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../23-libicu63_63.1-5_armhf.deb ...
Unpacking libicu63:armhf (63.1-5) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../24-libxml2_2.9.4+dfsg1-7+b1_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-7+b1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../25-libcroco3_0.6.12-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../26-gettext_0.19.8.1-9_armhf.deb ...
Unpacking gettext (0.19.8.1-9) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../27-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../28-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../29-debhelper_11.5.3_all.deb ...
Unpacking debhelper (11.5.3) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../30-libgfortran5_8.2.0-9+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (8.2.0-9+rpi1) ...
Selecting previously unselected package libgfortran-8-dev:armhf.
Preparing to unpack .../31-libgfortran-8-dev_8.2.0-9+rpi1_armhf.deb ...
Unpacking libgfortran-8-dev:armhf (8.2.0-9+rpi1) ...
Selecting previously unselected package gfortran-8.
Preparing to unpack .../32-gfortran-8_8.2.0-9+rpi1_armhf.deb ...
Unpacking gfortran-8 (8.2.0-9+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../33-gfortran_4%3a8.2.0-2+rpi1_armhf.deb ...
Unpacking gfortran (4:8.2.0-2+rpi1) ...
Selecting previously unselected package sbuild-build-depends-estscan-dummy.
Preparing to unpack .../34-sbuild-build-depends-estscan-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-estscan-dummy (0.invalid.0) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libicu63:armhf (63.1-5) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.58.1-2) ...
No schema files found: removed existing output file.
Setting up gettext-base (0.19.8.1-9) ...
Setting up libpipeline1:armhf (1.5.0-2) ...
Setting up m4 (1.4.18-2) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b1) ...
Setting up libmagic-mgc (1:5.34-2) ...
Setting up libmagic1:armhf (1:5.34-2) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Processing triggers for libc-bin (2.27-8+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgfortran5:armhf (8.2.0-9+rpi1) ...
Setting up autopoint (0.19.8.1-9) ...
Setting up libfile-stripnondeterminism-perl (1.0.0-1) ...
Setting up gettext (0.19.8.1-9) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.34-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.4-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgfortran-8-dev:armhf (8.2.0-9+rpi1) ...
Setting up libtool (2.4.6-6) ...
Setting up po-debconf (1.0.21) ...
Setting up gfortran-8 (8.2.0-9+rpi1) ...
Setting up gfortran (4:8.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up debhelper (11.5.3) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.0.0-1) ...
Setting up sbuild-build-depends-estscan-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.8.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-10+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-8+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-10+rpi1 binutils-arm-linux-gnueabihf_2.31.1-10+rpi1 binutils-common_2.31.1-10+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-9+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-9+rpi1 gcc-8-base_8.2.0-9+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.2.0-2+rpi1 gfortran-8_8.2.0-9+rpi1 gnupg_2.2.11-1 gnupg-agent_2.2.11-1 gnupg-l10n_2.2.11-1 gnupg-utils_2.2.11-1 gpg_2.2.11-1 gpg-agent_2.2.11-1 gpg-wks-client_2.2.11-1 gpg-wks-server_2.2.11-1 gpgconf_2.2.11-1 gpgsm_2.2.11-1 gpgv_2.2.11-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3+b1 libapt-pkg5.0_1.8.0~alpha2 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-10+rpi1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.27-8+rpi1 libc-dev-bin_2.27-8+rpi1 libc6_2.27-8+rpi1 libc6-dev_2.27-8+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9+rpi1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.5-2 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.10-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b5 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-9+rpi1 libgcc1_1:8.2.0-9+rpi1 libgcrypt20_1.8.4-3 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libgfortran-8-dev_8.2.0-9+rpi1 libgfortran5_8.2.0-9+rpi1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-9+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgssapi-krb5-2_1.16.1-1 libhogweed4_3.4-1 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-2 libisl19_0.20-2 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-2 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1+b1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4-1 libnpth0_1.6-1 libnss-systemd_239-13+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-13+rpi1 libpam0g_1.1.8-3.8 libpcre3_2:8.39-11+rpi1 libperl5.24_5.24.1-4 libperl5.28_5.28.1-1 libpipeline1_1.5.0-2 libplymouth4_0.9.4-1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libreadline7_7.0-5 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.3-2 libss2_1.44.4-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libsystemd0_239-13+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-13+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mount_2.32.1-0.1 multiarch-support_2.27-8+rpi1 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-1 perl-base_5.28.1-1 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-1 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-estscan-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-13+rpi1 systemd-sysv_239-13+rpi1 sysvinit-utils_2.92~beta-2 tar_1.30+dfsg-3+rpi1 tzdata_2018g-1 udev_239-13+rpi1 util-linux_2.32.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Jun 3 08:24:40 2018 UTC
gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv: issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./estscan_3.0.3-2.dsc
dpkg-source: info: extracting estscan in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking estscan_3.0.3.orig.tar.gz
dpkg-source: info: unpacking estscan_3.0.3-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makfile.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-938b9a6e-2c34-4397-9322-ab97b79e8f0a
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package estscan
dpkg-buildpackage: info: source version 3.0.3-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make V=1 -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
\rm -f *~ maskred makesmat estscan winsegshuffle *.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make V=1 -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -O2 -g -c maskred.c
gcc -O2 -g -c makesmat.c
gcc -O2 -g -c estscan.c
gfortran -O2 -g -c winsegshuffle.f
winsegshuffle.f:121:72:
IF(J.GT.97.OR.J.LT.1) PAUSE
1
Warning: Deleted feature: PAUSE statement at (1)
maskred.c:124:33: warning: 'bitValue' is static but used in inline function 'testBit' which is not static
{ return(bitField[index >> 3] & bitValue[index & 7]); }
^~~~~~~~
maskred.c:121:27: warning: 'bitValue' is static but used in inline function 'setBit' which is not static
{ bitField[index >> 3] |= bitValue[index & 7]; }
^~~~~~~~
gfortran -lm -o winsegshuffle winsegshuffle.o
gcc -lm -o maskred maskred.o
gcc -lm -o makesmat makesmat.o
gcc -lm -o estscan estscan.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'estscan' in '../estscan_3.0.3-2_armhf.deb'.
dpkg-deb: building package 'estscan-dbgsym' in '../estscan-dbgsym_3.0.3-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../estscan_3.0.3-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-12-13T06:00:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
estscan_3.0.3-2_armhf.changes:
------------------------------
Format: 1.8
Date: Sun, 03 Jun 2018 10:20:28 +0200
Source: estscan
Binary: estscan
Architecture: armhf
Version: 3.0.3-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Steffen Moeller <moeller@debian.org>
Description:
estscan - ORF-independent detector of coding DNA sequences
Closes: 900532
Changes:
estscan (3.0.3-2) unstable; urgency=medium
.
* Reuploading to main / thanks to Goeran Weinholt for reexamining my
interpretation of the license (Closes: #900532).
Checksums-Sha1:
e3e19180ee6f9b23895dec40ded0ba0ff3a27565 50068 estscan-dbgsym_3.0.3-2_armhf.deb
e1a3048bdd0c4cd029cad63ee57342d63ab6d162 4564 estscan_3.0.3-2_armhf.buildinfo
161ddd31f1bf0ef76d0ab0048db8c415a43c3e0a 40312 estscan_3.0.3-2_armhf.deb
Checksums-Sha256:
2698f9a51137f2e788e1c26a78b7278576c7481a8a7e60fc6db23d66c212bfac 50068 estscan-dbgsym_3.0.3-2_armhf.deb
70405b0c6ef48efef391c7ca7c9dfc7557f1d94a1ec1c94d824f11dba2c98411 4564 estscan_3.0.3-2_armhf.buildinfo
c3359edba36cb90c50e3191323372b10cdf0923248b22dd526d9946399718c13 40312 estscan_3.0.3-2_armhf.deb
Files:
f948d0a3b3d974001962cebfc1978baf 50068 debug optional estscan-dbgsym_3.0.3-2_armhf.deb
4a3ba3d194e03fd10b9f758f17c71089 4564 science optional estscan_3.0.3-2_armhf.buildinfo
97e114badc4c7edb8f9ac9d898cedc3f 40312 science optional estscan_3.0.3-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
estscan-dbgsym_3.0.3-2_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 50068 bytes: control archive=696 bytes.
492 bytes, 12 lines control
424 bytes, 4 lines md5sums
Package: estscan-dbgsym
Source: estscan
Version: 3.0.3-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 83
Depends: estscan (= 3.0.3-2)
Section: debug
Priority: optional
Description: debug symbols for estscan
Build-Ids: 35ecc819fa7b3b8377cd3c4104fa013400e968c6 7c5f388444ff756e005e77806bf47fda5bff9209 92f504047251b4aab8d1575adf781a05425f1dcf deb93de4b011acddf78c342642b192acdd5f3f6d
drwxr-xr-x root/root 0 2018-06-03 08:20 ./
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/lib/
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/lib/debug/.build-id/35/
-rw-r--r-- root/root 10160 2018-06-03 08:20 ./usr/lib/debug/.build-id/35/ecc819fa7b3b8377cd3c4104fa013400e968c6.debug
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/lib/debug/.build-id/7c/
-rw-r--r-- root/root 12364 2018-06-03 08:20 ./usr/lib/debug/.build-id/7c/5f388444ff756e005e77806bf47fda5bff9209.debug
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/lib/debug/.build-id/92/
-rw-r--r-- root/root 30392 2018-06-03 08:20 ./usr/lib/debug/.build-id/92/f504047251b4aab8d1575adf781a05425f1dcf.debug
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root 17052 2018-06-03 08:20 ./usr/lib/debug/.build-id/de/b93de4b011acddf78c342642b192acdd5f3f6d.debug
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/share/
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-06-03 08:20 ./usr/share/doc/estscan-dbgsym -> estscan
estscan_3.0.3-2_armhf.deb
-------------------------
new Debian package, version 2.0.
size 40312 bytes: control archive=1348 bytes.
1287 bytes, 24 lines control
643 bytes, 11 lines md5sums
Package: estscan
Version: 3.0.3-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 163
Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.5), libgfortran5 (>= 8), perl:any
Section: science
Priority: optional
Homepage: http://estscan.sourceforge.net/
Description: ORF-independent detector of coding DNA sequences
ESTScan is a program that can detect coding regions in DNA sequences,
even if they are of low quality. ESTScan will also detect and correct
sequencing errors that lead to frameshifts. ESTScan is not a gene
prediction program , nor is it an open reading frame detector. In fact,
its strength lies in the fact that it does not require an open reading
frame to detect a coding region. As a result, the program may miss a
few translated amino acids at either the N or the C terminus, but will
detect coding regions with high selectivity and sensitivity.
.
ESTScan takes advantages of the bias in hexanucleotide usage found in
coding regions relative to non-coding regions. This bias is formalized
as an inhomogeneous 3-periodic fifth-order Hidden Markov Model
(HMM). Additionally, the HMM of ESTScan has been extended to allows
insertions and deletions when these improve the coding region statistics.
drwxr-xr-x root/root 0 2018-06-03 08:20 ./
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/bin/
-rwxr-xr-x root/root 26196 2018-06-03 08:20 ./usr/bin/estscan
-rwxr-xr-x root/root 25415 2006-12-19 13:15 ./usr/bin/evaluate_model
-rwxr-xr-x root/root 18837 2006-12-19 13:15 ./usr/bin/extract_EST
-rwxr-xr-x root/root 16564 2006-12-19 12:52 ./usr/bin/extract_UG_EST
-rwxr-xr-x root/root 13836 2018-06-03 08:20 ./usr/bin/makesmat
-rwxr-xr-x root/root 9724 2018-06-03 08:20 ./usr/bin/maskred
-rwxr-xr-x root/root 18182 2007-03-26 17:38 ./usr/bin/prepare_data
-rwxr-xr-x root/root 9740 2018-06-03 08:20 ./usr/bin/winsegshuffle
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/share/
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/share/doc/estscan/
-rw-r--r-- root/root 256 2018-06-03 08:20 ./usr/share/doc/estscan/changelog.Debian.gz
-rw-r--r-- root/root 5480 2018-05-31 22:45 ./usr/share/doc/estscan/copyright
drwxr-xr-x root/root 0 2018-06-03 08:20 ./usr/share/perl5/
-rw-r--r-- root/root 8714 2006-12-19 16:01 ./usr/share/perl5/build_model_utils.pl
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 1100
Build-Time: 38
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 287
Job: estscan_3.0.3-2
Machine Architecture: armhf
Package: estscan
Package-Time: 379
Source-Version: 3.0.3-2
Space: 1100
Status: successful
Version: 3.0.3-2
--------------------------------------------------------------------------------
Finished at 2018-12-13T06:00:59Z
Build needed 00:06:19, 1100k disc space