Raspbian Package Auto-Building

Build log for eigensoft (8.0.0+dfsg-1) on armhf

eigensoft8.0.0+dfsg-1armhf → 2022-10-30 04:49:10

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| eigensoft 8.0.0+dfsg-1 (armhf)               Sun, 30 Oct 2022 04:37:45 +0000 |
+==============================================================================+

Package: eigensoft
Version: 8.0.0+dfsg-1
Source Version: 8.0.0+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-c4e47ad8-7c7b-4665-a6d7-4e419168b2cd' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.2 MB]
Fetched 27.6 MB in 29s (939 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'eigensoft' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/eigensoft.git
Please use:
git clone https://salsa.debian.org/med-team/eigensoft.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 239 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main eigensoft 8.0.0+dfsg-1 (dsc) [2132 B]
Get:2 http://172.17.4.1/private bookworm-staging/main eigensoft 8.0.0+dfsg-1 (tar) [231 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main eigensoft 8.0.0+dfsg-1 (diff) [6132 B]
Fetched 239 kB in 0s (1327 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/eigensoft-iWiKiQ/eigensoft-8.0.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/eigensoft-iWiKiQ' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ucacw7/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ucacw7/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ucacw7/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2603 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 29 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (14.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14774 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
Filtered Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-eigensoft-dummy' in '/<<BUILDDIR>>/resolver-ucacw7/apt_archive/sbuild-build-depends-eigensoft-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-eigensoft-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ Sources [525 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ Packages [603 B]
Fetched 2461 B in 1s (3062 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install eigensoft build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
  gfortran-12 groff-base intltool-debian libarchive-zip-perl libblas-dev
  libblas3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl
  libgfortran-12-dev libgfortran5 libgsl-dev libgsl27 libgslcblas0 libicu71
  liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1
  libpipeline1 libsub-override-perl libtmglib-dev libtmglib3 libtool
  libuchardet0 libxml2 m4 man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc
  libcoarrays-dev groff liblapack-doc gsl-ref-psdoc | gsl-doc-pdf
  | gsl-doc-info | gsl-ref-html libtool-doc gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
  gfortran-12 groff-base intltool-debian libarchive-zip-perl libblas-dev
  libblas3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl
  libgfortran-12-dev libgfortran5 libgsl-dev libgsl27 libgslcblas0 libicu71
  liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1
  libpipeline1 libsub-override-perl libtmglib-dev libtmglib3 libtool
  libuchardet0 libxml2 m4 man-db po-debconf
  sbuild-build-depends-eigensoft-dummy
0 upgraded, 45 newly installed, 0 to remove and 29 not upgraded.
Need to get 33.1 MB of archives.
After this operation, 138 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ucacw7/apt_archive ./ sbuild-build-depends-eigensoft-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1.1 [78.2 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-3 [34.3 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.0-1 [1299 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-9 [171 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-9 [510 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.10 [79.8 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-9 [1220 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.10 [940 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-3+rpi1 [238 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-3+rpi1 [285 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-3+rpi1 [7509 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-3 [81.4 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libgsl27 armhf 2.7.1+dfsg-3 [758 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libgsl-dev armhf 2.7.1+dfsg-3 [958 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libtmglib3 armhf 3.10.1-2 [96.0 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf liblapacke armhf 3.10.1-2 [299 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libtmglib-dev armhf 3.10.1-2 [96.4 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf liblapacke-dev armhf 3.10.1-2 [279 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libuchardet0:armhf.
(Reading database ... 14774 files and directories currently installed.)
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Selecting previously unselected package sbuild-build-depends-eigensoft-dummy.
Preparing to unpack .../44-sbuild-build-depends-eigensoft-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-eigensoft-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.6-3) ...
Setting up libicu71:armhf (71.1-3) ...
Setting up bsdextrautils (2.38.1-1.1) ...
Setting up libgslcblas0:armhf (2.7.1+dfsg-3) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.10) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up gettext-base (0.21-9) ...
Setting up libgsl27:armhf (2.7.1+dfsg-3) ...
Setting up m4 (1.4.19-1) ...
Setting up file (1:5.41-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up autopoint (0.21-9) ...
Setting up libgfortran5:armhf (12.2.0-3+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up libblas-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up liblapack3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.21-9) ...
Setting up libgsl-dev (2.7.1+dfsg-3) ...
Setting up libtool (2.4.7-4) ...
Setting up libgfortran-12-dev:armhf (12.2.0-3+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up gfortran-12 (12.2.0-3+rpi1) ...
Setting up libtmglib3:armhf (3.10.1-2) ...
Setting up liblapack-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-8) ...
Setting up liblapacke:armhf (3.10.1-2) ...
Setting up libtmglib-dev:armhf (3.10.1-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up liblapacke-dev:armhf (3.10.1-2) ...
Setting up man-db (2.11.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up debhelper (13.10) ...
Setting up sbuild-build-depends-eigensoft-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-1.1 bsdutils_1:2.38.1-1.1 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.10 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-9 gettext-base_0.21-9 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-3+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-6+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-1.1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.10 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-3+rpi1 libgfortran5_12.2.0-3+rpi1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgsl-dev_2.7.1+dfsg-3 libgsl27_2.7.1+dfsg-3 libgslcblas0_2.7.1+dfsg-3 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 liblapack-dev_3.10.1-2 liblapack3_3.10.1-2 liblapacke_3.10.1-2 liblapacke-dev_3.10.1-2 libldap-2.5-0_2.5.13+dfsg-2+rpi1 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1.1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.6-3 libreadline8_8.2-1 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol1_3.1-1 libsepol2_3.4-2 libsmartcols1_2.38.1-1.1 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtmglib-dev_3.10.1-2 libtmglib3_3.10.1-2 libtool_2.4.7-4 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-1.1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.0-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-1.1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-eigensoft-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 util-linux_2.38.1-1.1 util-linux-extra_2.38.1-1.1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.0Nf0NZKp/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 28 08:08:19 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./eigensoft_8.0.0+dfsg-1.dsc
dpkg-source: info: extracting eigensoft in /<<BUILDDIR>>/eigensoft-8.0.0+dfsg
dpkg-source: info: unpacking eigensoft_8.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking eigensoft_8.0.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying blas.patch
dpkg-source: info: applying lapacke.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-c4e47ad8-7c7b-4665-a6d7-4e419168b2cd
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package eigensoft
dpkg-buildpackage: info: source version 8.0.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg'
dh_clean
/usr/bin/make -C src clobber
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg/src'
rm -f *.o */*.o */*.a nicksrc/*.o eigensrc/*.o ksrc/*.o
rm -f baseprog convertf mergeit pca eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca
cd ../bin/ ; rm -f baseprog convertf mergeit pca pcatoy smartrel smarteigenstrat twstats eigenstrat eigenstratQTL smartpca ; cd ../src
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg'
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg'
/usr/bin/make DEBUG_OPTIONS=-g -C src all
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg/src'
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o baseprog.o baseprog.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mcio.o mcio.c
mcio.c: In function 'getgenos':
mcio.c:1383:5: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
 1383 |     system (cmd);
      |     ^~~~~~~~~~~~
In file included from ../include/statsubs.h:6,
                 from ../include/nicklib.h:4,
                 from ../include/admutils.h:2,
                 from ../include/mcio.h:11,
                 from mcio.c:3:
mcio.c: In function 'getindivs':
../include/strsubs.h:100:54: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
  100 | #define ZALLOC(item,n,type)      if ((item = (type *)calloc((n),sizeof(type))) == NULL) \
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~
mcio.c:968:3: note: in expansion of macro 'ZALLOC'
  968 |   ZALLOC (indivmarkers, nindiv, Indiv *);
      |   ^~~~~~
In file included from ../include/strsubs.h:1,
                 from ../include/vsubs.h:5,
                 from ../include/mcio.h:10:
/usr/include/stdlib.h:543:14: note: in a call to allocation function 'calloc' declared here
  543 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^~~~~~
mcio.c: In function 'outfiles':
mcio.c:3218:23: warning: '%s' directive argument is null [-Wformat-overflow=]
 3218 |     printf ("snpname: %s %d\n", snpname, numsnps);
      |                       ^~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o egsubs.o egsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o admutils.o admutils.c
admutils.c: In function 'setid2pops':
admutils.c:1256:31: warning: format '%s' expects a matching 'char *' argument [-Wformat=]
 1256 |       printf ("(setid2pops): %s not found\n");
      |                              ~^
      |                               |
      |                               char *
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o h2d.o h2d.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/exclude.o eigensrc/exclude.c
/usr/bin/make -C nicksrc
make[3]: Entering directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg/src/nicksrc'
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o strsubs.o strsubs.c
strsubs.c: In function 'printslurmenv':
strsubs.c:2007:2: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
 2007 |  system(sss) ;
      |  ^~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sortit.o sortit.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o vsubs.o vsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o statsubs.o statsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o linsubs.o linsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o getpars.o getpars.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o xsearch.o xsearch.c
xsearch.c: In function 'xshash':
xsearch.c:321:8: warning: right shift count >= width of type [-Wshift-count-overflow]
  321 |  a = w >> 32 ;
      |        ^~
xsearch.c: In function 'xlhash':
xsearch.c:348:10: warning: right shift count >= width of type [-Wshift-count-overflow]
  348 |   b1 = w >> 61 ;
      |          ^~
xsearch.c: In function 'xloadsearchx':
xsearch.c:256:19: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  256 |     sprintf (xx, "%d", i);
      |                   ^~
xsearch.c:256:18: note: directive argument in the range [0, 1073741822]
  256 |     sprintf (xx, "%d", i);
      |                  ^~~~
In file included from /usr/include/stdio.h:906,
                 from xsearch.c:1:
In function 'sprintf',
    inlined from 'xloadsearchx' at xsearch.c:256:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 8
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
xsearch.c: In function 'xloadsearchx':
xsearch.c:256:19: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  256 |     sprintf (xx, "%d", i);
      |                   ^~
xsearch.c:256:18: note: directive argument in the range [0, 1073741822]
  256 |     sprintf (xx, "%d", i);
      |                  ^~~~
In function 'sprintf',
    inlined from 'xloadsearchx' at xsearch.c:256:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 8
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
xsearch.c: In function 'xloadsearch':
xsearch.c:278:19: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  278 |     sprintf (xx, "%d", i);
      |                   ^~
xsearch.c:278:18: note: directive argument in the range [0, 1073741823]
  278 |     sprintf (xx, "%d", i);
      |                  ^~~~
In function 'sprintf',
    inlined from 'xloadsearch' at xsearch.c:278:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 8
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
xsearch.c: In function 'xloadsearch':
xsearch.c:278:19: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  278 |     sprintf (xx, "%d", i);
      |                   ^~
xsearch.c:278:18: note: directive argument in the range [0, 1073741823]
  278 |     sprintf (xx, "%d", i);
      |                  ^~~~
In function 'sprintf',
    inlined from 'xloadsearch' at xsearch.c:278:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 8
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gauss.o gauss.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -c -O3   -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gds.o gds.c
ar -r libnick.a strsubs.o sortit.o vsubs.o statsubs.o linsubs.o getpars.o xsearch.o gauss.o gds.o
ar: creating libnick.a
ranlib libnick.a
make[3]: Leaving directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg/src/nicksrc'
cc -Wl,-z,relro -Wl,-z,now  baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o baseprog
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o convertf.o convertf.c
cc -Wl,-z,relro -Wl,-z,now  convertf.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o convertf
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mergeit.o mergeit.c
cc -Wl,-z,relro -Wl,-z,now  mergeit.o mcio.o admutils.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o mergeit
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o pca.o pca.c
pca.c: In function 'main':
pca.c:102:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  102 |     fscanf (fp, "%c", &Xchar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
pca.c:167:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  167 |         fscanf (fp, "%c", &Xchar);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~
pca.c:190:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  190 |       fscanf (fp, "%c", &Xchar);        /* should be \n character */
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/eigsubs.o eigensrc/eigsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/eigx.o eigensrc/eigx.c
cc -Wl,-z,relro -Wl,-z,now  pca.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o pca
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/pcatoy.o eigensrc/pcatoy.c
cc -Wl,-z,relro -Wl,-z,now  eigensrc/pcatoy.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/pcatoy
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/smartrel.o eigensrc/smartrel.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o twsubs.o twsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o qpsubs.o qpsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o regsubs.o regsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/smartsubs.o eigensrc/smartsubs.c
cc -Wl,-z,relro -Wl,-z,now  eigensrc/smartrel.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o eigensrc/eigsubs.o eigensrc/eigx.o eigensrc/smartsubs.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartrel
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/smarteigenstrat.o eigensrc/smarteigenstrat.c
eigensrc/smarteigenstrat.c: In function 'readpcafile':
eigensrc/smarteigenstrat.c:332:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  332 |   fscanf (fppca, "%d", &K);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:339:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  339 |     fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:342:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  342 |       fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:360:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  360 |   fscanf (fppca, "%lf", &tempdouble);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now  eigensrc/smarteigenstrat.o mcio.o admutils.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smarteigenstrat
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/twstats.o eigensrc/twstats.c
cc -Wl,-z,relro -Wl,-z,now  eigensrc/twstats.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/twstats
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  eigensrc/eigenstrat.c  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstrat
eigensrc/eigenstrat.c: In function 'main':
eigensrc/eigenstrat.c:86:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   86 |     fscanf (fp, "%c", &Xchar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:123:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  123 |   fscanf (fppca, "%d", &K);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:130:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  130 |     fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:133:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  133 |       fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:151:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  151 |   fscanf (fppca, "%lf", &tempdouble);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:165:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  165 |     fscanf (fppheno, "%c", &Xchar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:188:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  188 |   fscanf (fppheno, "%c", &Xchar);       /* should be end of file */
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:244:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  244 |       fscanf (fp, "%c", &Xchar);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:267:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  267 |     fscanf (fp, "%c", &Xchar);  /* should be \n character */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  eigensrc/eigenstratQTL.c  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstratQTL
eigensrc/eigenstratQTL.c: In function 'main':
eigensrc/eigenstratQTL.c:86:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   86 |     fscanf (fp, "%c", &Xchar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:123:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  123 |   fscanf (fppca, "%d", &K);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:130:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  130 |     fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:133:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  133 |       fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:151:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  151 |   fscanf (fppca, "%lf", &tempdouble);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:172:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  172 |     fscanf (fppheno, "%lf", &iscase[n]);        /* QTL phenotype */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:174:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  174 |   fscanf (fppheno, "%lf", &tempdouble); /* to check # entries */
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:227:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  227 |       fscanf (fp, "%c", &Xchar);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:250:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  250 |     fscanf (fp, "%c", &Xchar);  /* should be \n character */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/smartpca.o eigensrc/smartpca.c
eigensrc/smartpca.c: In function 'main':
eigensrc/smartpca.c:1292:23: warning: format '%d' expects argument of type 'int', but argument 2 has type 'char *' [-Wformat=]
 1292 |    printf("elllist: %3d %20s\n", indx -> ID) ; fflush(stdout) ;
      |                     ~~^          ~~~~~~~~~~
      |                       |               |
      |                       int             char *
      |                     %3s
eigensrc/smartpca.c:1292:28: warning: format '%s' expects a matching 'char *' argument [-Wformat=]
 1292 |    printf("elllist: %3d %20s\n", indx -> ID) ; fflush(stdout) ;
      |                         ~~~^
      |                            |
      |                            char *
eigensrc/smartpca.c:1675:43: warning: format '%d' expects argument of type 'int', but argument 2 has type 'double' [-Wformat=]
 1675 |    printf("coeff multiplier (eigenvector %d): %9.3f\n", y, j) ;
      |                                          ~^             ~
      |                                           |             |
      |                                           int           double
      |                                          %f
eigensrc/smartpca.c:1675:51: warning: format '%f' expects argument of type 'double', but argument 3 has type 'int' [-Wformat=]
 1675 |    printf("coeff multiplier (eigenvector %d): %9.3f\n", y, j) ;
      |                                               ~~~~^        ~
      |                                                   |        |
      |                                                   double   int
      |                                               %9.3d
eigensrc/smartpca.c:700:5: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
  700 |     system (buff);
      |     ^~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gval.o gval.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o ksrc/kjg_fpca.o ksrc/kjg_fpca.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o ksrc/kjg_gsl.o ksrc/kjg_gsl.c
ksrc/kjg_gsl.c: In function 'kjg_gsl_matrix_fscanf':
ksrc/kjg_gsl.c:38:11: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
   38 |           fscanf (stream, "%lg", &x);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now  eigensrc/smartpca.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartpca
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg/src'
cd src && make install
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg/src'
mv baseprog convertf mergeit pca eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca ../bin
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install --destdir=debian/eigensoft/ -a
   debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg'
dh_install
find debian/eigensoft/usr/share/ -type f -empty -delete
# file consists only from single line with wrong interpreter
find debian/eigensoft/usr/share/ -type f -name HGDP.X.perl -delete
# Fix wrappers and drop *.perl extension in /usr/bin while keeping
# the original name in /usr/lib/debian-med/bin
mkdir -p debian/eigensoft/usr/lib/debian-med/bin
for pl in evec2pca-ped evec2pca smarteigenstrat smartpca ; do \
    rm debian/eigensoft/usr/bin/${pl} ; \
    sed -i \
        -e "s?\(command[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
                -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
                -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(evec2pca.*\)\.perl?\1?" \
                -e "s?\(${pl}\)\.perl?\1?" \
        debian/eigensoft/usr/bin/${pl}.perl ; \
    cp -a debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/bin/${pl} ; \
    mv debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/lib/debian-med/bin ; \
done
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca-ped': No such file or directory
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca': No such file or directory
for pl in `grep -lR '/usr/.*/bin/perl' | grep -v debian/rules` ; do \
    sed -i -e "s?/usr/.*/bin/perl?/usr/bin/perl?" ${pl} ; \
done
rm debian/eigensoft/usr/bin/gc.perl
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg'
dh_fixperms
find debian/*/usr/share/eigensoft -type f -name "*.perl" -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-8.0.0+dfsg'
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/pca debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pcatoy were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/lib/eigensoft/smartpca was not linked against libblas.so.3 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'eigensoft' in '../eigensoft_8.0.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'eigensoft-dbgsym' in '../eigensoft-dbgsym_8.0.0+dfsg-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../eigensoft_8.0.0+dfsg-1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../eigensoft_8.0.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-10-30T04:49:03Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


eigensoft_8.0.0+dfsg-1_armhf.changes:
-------------------------------------

Format: 1.8
Date: Fri, 28 Oct 2022 10:03:37 +0200
Source: eigensoft
Binary: eigensoft eigensoft-dbgsym
Architecture: armhf
Version: 8.0.0+dfsg-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 eigensoft  - reduction of population bias for genetic analyses
Changes:
 eigensoft (8.0.0+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.6.1 (routine-update)
   * Fix Perl interpreter path
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 766849bfc020da6b4e0fc9e37ed8857fd178dcfd 5402 eigensoft_8.0.0+dfsg-1_armhf.buildinfo
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Files:
 10860ad2bfa2551188b317967fe6d026 2901848 debug optional eigensoft-dbgsym_8.0.0+dfsg-1_armhf.deb
 841f9e91a24f425bd5166a4f352d4889 5402 science optional eigensoft_8.0.0+dfsg-1_armhf.buildinfo
 4dc2cafa6030696fd6e45875ce239a4f 362976 science optional eigensoft_8.0.0+dfsg-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


eigensoft-dbgsym_8.0.0+dfsg-1_armhf.deb
---------------------------------------

 new Debian package, version 2.0.
 size 2901848 bytes: control archive=1108 bytes.
     799 bytes,    12 lines      control              
    1255 bytes,    12 lines      md5sums              
 Package: eigensoft-dbgsym
 Source: eigensoft
 Version: 8.0.0+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3221
 Depends: eigensoft (= 8.0.0+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for eigensoft
 Build-Ids: 0d9ff960f8330e6d3f5a09ff439f58b27f004855 2b69a3e7e7f4ce1481191d714cde561ac64f2215 34e8cbe655e5a9fbe6867c96f180db4e394a8786 68a8aca2e6ad17a81c8c75a55b8f9df2eea03a5f 7050fc8a0692603d3cf76e05f17bd0d857df814a 7be474175648a98ac65aa459f9ae624237d4a8aa 7cf0824b7d0c78c9aaf94a8b253b563381b8efd1 9969aed7ae7f889baa7bc8e7015f2e77d25343b5 c2998d7743e7ccb6ae06925f3fdbb69810a499d9 c814cd496b3c5ee9637bc7119ded39901d2678a6 de7be03592868ae8ae851f9493ab4184c68016ad

drwxr-xr-x root/root         0 2022-10-28 08:03 ./
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/
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drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/0d/
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drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/68/
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drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root    271744 2022-10-28 08:03 ./usr/lib/debug/.build-id/70/50fc8a0692603d3cf76e05f17bd0d857df814a.debug
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drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/7c/
-rw-r--r-- root/root    383400 2022-10-28 08:03 ./usr/lib/debug/.build-id/7c/f0824b7d0c78c9aaf94a8b253b563381b8efd1.debug
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/99/
-rw-r--r-- root/root    158088 2022-10-28 08:03 ./usr/lib/debug/.build-id/99/69aed7ae7f889baa7bc8e7015f2e77d25343b5.debug
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/c2/
-rw-r--r-- root/root    384816 2022-10-28 08:03 ./usr/lib/debug/.build-id/c2/998d7743e7ccb6ae06925f3fdbb69810a499d9.debug
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/c8/
-rw-r--r-- root/root    494472 2022-10-28 08:03 ./usr/lib/debug/.build-id/c8/14cd496b3c5ee9637bc7119ded39901d2678a6.debug
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root    389844 2022-10-28 08:03 ./usr/lib/debug/.build-id/de/7be03592868ae8ae851f9493ab4184c68016ad.debug
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root     23480 2022-10-28 08:03 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/eigensoft.debug
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/share/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-10-28 08:03 ./usr/share/doc/eigensoft-dbgsym -> eigensoft


eigensoft_8.0.0+dfsg-1_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 362976 bytes: control archive=3904 bytes.
    1152 bytes,    20 lines      control              
   16709 bytes,   204 lines      md5sums              
 Package: eigensoft
 Version: 8.0.0+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3353
 Depends: libblas3 | libblas.so.3, libc6 (>= 2.34), libgsl27 (>= 2.7.1), liblapack3 | liblapack.so.3, liblapacke (>= 3.10.1), perl:any
 Recommends: gnuplot
 Section: science
 Priority: optional
 Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/
 Description: reduction of population bias for genetic analyses
  The EIGENSOFT package combines functionality from the group's population
  genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification
  method (Price et al. 2006). The EIGENSTRAT method uses principal components
  analysis to explicitly model ancestry differences between cases and
  controls along continuous axes of variation; the resulting correction is
  specific to a candidate marker's variation in frequency across ancestral
  populations, minimizing spurious associations while maximizing power to
  detect true associations. The EIGENSOFT package has a built-in plotting
  script and supports multiple file formats and quantitative phenotypes.

drwxr-xr-x root/root         0 2022-10-28 08:03 ./
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/bin/
-rwxr-xr-x root/root    329628 2022-10-28 08:03 ./usr/bin/baseprog
-rwxr-xr-x root/root    329764 2022-10-28 08:03 ./usr/bin/convertf
-rwxr-xr-x root/root     67164 2022-10-28 08:03 ./usr/bin/eigenstrat
-rwxr-xr-x root/root     67164 2022-10-28 08:03 ./usr/bin/eigenstratQTL
-rwxr-xr-x root/root      1462 2022-10-28 08:03 ./usr/bin/evec2pca
-rwxr-xr-x root/root      2311 2022-10-28 08:03 ./usr/bin/evec2pca-ped
lrwxrwxrwx root/root         0 2022-10-28 08:03 ./usr/bin/gc-eigensoft -> ../lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root    329668 2022-10-28 08:03 ./usr/bin/mergeit
-rwxr-xr-x root/root    132704 2022-10-28 08:03 ./usr/bin/pca
-rwxr-xr-x root/root    132704 2022-10-28 08:03 ./usr/bin/pcatoy
-rwxr-xr-x root/root      5702 2022-10-28 08:03 ./usr/bin/ploteig
-rwxr-xr-x root/root      2035 2022-10-28 08:03 ./usr/bin/rescale_ell
-rwxr-xr-x root/root      2112 2022-10-28 08:03 ./usr/bin/smarteigenstrat
-rwxr-xr-x root/root      4738 2022-10-28 08:03 ./usr/bin/smartpca
-rwxr-xr-x root/root    395348 2022-10-28 08:03 ./usr/bin/smartrel
-rwxr-xr-x root/root    263836 2022-10-28 08:03 ./usr/bin/twstats
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debian-med/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root      2311 2022-10-28 08:03 ./usr/lib/debian-med/bin/evec2pca-ped.perl
-rwxr-xr-x root/root      1462 2022-10-28 08:03 ./usr/lib/debian-med/bin/evec2pca.perl
-rwxr-xr-x root/root      1887 2021-06-07 14:37 ./usr/lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root      2112 2022-10-28 08:03 ./usr/lib/debian-med/bin/smarteigenstrat.perl
-rwxr-xr-x root/root      4738 2022-10-28 08:03 ./usr/lib/debian-med/bin/smartpca.perl
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/lib/eigensoft/
-rwxr-xr-x root/root    329636 2022-10-28 08:03 ./usr/lib/eigensoft/smarteigenstrat
-rwxr-xr-x root/root    460952 2022-10-28 08:03 ./usr/lib/eigensoft/smartpca
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/share/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/share/doc/eigensoft/
-rw-r--r-- root/root       726 2022-10-28 08:03 ./usr/share/doc/eigensoft/README.Debian
-rw-r--r-- root/root      2631 2021-06-07 14:37 ./usr/share/doc/eigensoft/README.gz
-rw-r--r-- root/root       503 2022-10-28 08:03 ./usr/share/doc/eigensoft/changelog.Debian.gz
-rw-r--r-- root/root      2553 2022-10-28 08:03 ./usr/share/doc/eigensoft/copyright
drwxr-xr-x root/root         0 2022-10-28 08:03 ./usr/share/doc/eigensoft/examples/
drwxr-xr-x root/root         0 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/
-rw-r--r-- root/root     17865 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/README
-rw-r--r-- root/root      1610 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ancestrymapgeno
-rw-r--r-- root/root        17 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.bed
-rw-r--r-- root/root        42 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.eigenstratgeno
-rw-r--r-- root/root       163 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind
-rw-r--r-- root/root       170 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind.packedancestrymap
-rw-r--r-- root/root       294 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.map
-rw-r--r-- root/root       384 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymap
-rw-r--r-- root/root       384 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymapgeno
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-rw-r--r-- root/root       140 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedind
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-rwxr-xr-x root/root       425 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/ind2pheno.perl
-rw-r--r-- root/root       225 2021-06-07 14:37 ./usr/share/doc/eigensoft/examples/CONVERTF/par.ANCESTRYMAP.EIGENSTRAT
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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 25852
Build-Time: 279
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 345
Job: eigensoft_8.0.0+dfsg-1
Machine Architecture: armhf
Package: eigensoft
Package-Time: 678
Source-Version: 8.0.0+dfsg-1
Space: 25852
Status: successful
Version: 8.0.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2022-10-30T04:49:03Z
Build needed 00:11:18, 25852k disc space