eigensoft →
7.2.1+dfsg-3 →
armhf → 2021-10-14 23:22:15
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| eigensoft 7.2.1+dfsg-3 (armhf) Thu, 14 Oct 2021 23:11:03 +0000 |
+==============================================================================+
Package: eigensoft
Version: 7.2.1+dfsg-3
Source Version: 7.2.1+dfsg-3
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-10051d41-75ae-4810-81d2-f4565dcfe0c8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 28s (919 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'eigensoft' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/eigensoft.git
Please use:
git clone https://salsa.debian.org/med-team/eigensoft.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 178 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main eigensoft 7.2.1+dfsg-3 (dsc) [2132 B]
Get:2 http://172.17.0.1/private bookworm-staging/main eigensoft 7.2.1+dfsg-3 (tar) [170 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main eigensoft 7.2.1+dfsg-3 (diff) [6068 B]
Fetched 178 kB in 0s (840 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/eigensoft-KKFwmj/eigensoft-7.2.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/eigensoft-KKFwmj' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4vQyB0/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4vQyB0/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4vQyB0/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2909 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
Filtered Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-eigensoft-dummy' in '/<<BUILDDIR>>/resolver-4vQyB0/apt_archive/sbuild-build-depends-eigensoft-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-eigensoft-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ Sources [525 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ Packages [602 B]
Fetched 2460 B in 1s (3351 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install eigensoft build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cpp-10 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++-10 gcc-10 gcc-10-base
gcc-11-base gettext gettext-base gfortran gfortran-10 groff-base
intltool-debian libarchive-zip-perl libasan6 libatomic1 libblas-dev libblas3
libcc1-0 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl
libgcc-10-dev libgcc-s1 libgfortran-10-dev libgfortran5 libgomp1 libgsl-dev
libgsl25 libgslcblas0 libicu67 liblapack-dev liblapack3 liblapacke
liblapacke-dev libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libstdc++-10-dev libstdc++6 libsub-override-perl libtmglib-dev libtmglib3
libtool libubsan1 libuchardet0 libxml2 m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-10-locales dh-make
gcc-10-doc gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-10-doc libcoarrays-dev groff liblapack-doc gsl-ref-psdoc
| gsl-doc-pdf | gsl-doc-info | gsl-ref-html libstdc++-10-doc libtool-doc
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-10 groff-base intltool-debian libarchive-zip-perl libblas-dev
libblas3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl
libgfortran-10-dev libgfortran5 libgsl-dev libgsl25 libgslcblas0 libicu67
liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtmglib-dev libtmglib3
libtool libuchardet0 libxml2 m4 man-db po-debconf
sbuild-build-depends-eigensoft-dummy sensible-utils
The following packages will be upgraded:
cpp-10 g++-10 gcc-10 gcc-10-base gcc-11-base libasan6 libatomic1 libcc1-0
libgcc-10-dev libgcc-s1 libgomp1 libstdc++-10-dev libstdc++6 libubsan1
14 upgraded, 47 newly installed, 0 to remove and 21 not upgraded.
Need to get 66.2 MB of archives.
After this operation, 129 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4vQyB0/apt_archive ./ sbuild-build-depends-eigensoft-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-8+rpi1 [1944 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-8+rpi1 [797 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-8+rpi1 [88.1 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-8+rpi1 [205 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-8+rpi1 [36.1 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-8+rpi1 [37.8 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-8+rpi1 [8196 B]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-8+rpi1 [466 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf g++-10 armhf 10.3.0-11+rpi1 [7350 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf gcc-10 armhf 10.3.0-11+rpi1 [13.4 MB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libstdc++-10-dev armhf 10.3.0-11+rpi1 [1755 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libgcc-10-dev armhf 10.3.0-11+rpi1 [678 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf cpp-10 armhf 10.3.0-11+rpi1 [6690 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf gcc-10-base armhf 10.3.0-11+rpi1 [206 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-8+rpi1 [235 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libgfortran-10-dev armhf 10.3.0-11+rpi1 [277 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf gfortran-10 armhf 10.3.0-11+rpi1 [7201 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf gfortran armhf 4:10.2.1-1+rpi1 [1428 B]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libgsl-dev armhf 2.6+dfsg-2 [950 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.9.0-3 [1597 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf liblapack-dev armhf 3.9.0-3 [2980 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libtmglib3 armhf 3.9.0-3 [96.9 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf liblapacke armhf 3.9.0-3 [289 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libtmglib-dev armhf 3.9.0-3 [96.9 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf liblapacke-dev armhf 3.9.0-3 [261 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up bsdextrautils (2.37.2-3) ...
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Setting up gcc-10-base:armhf (10.3.0-11+rpi1) ...
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Setting up libblas3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libatomic1:armhf (11.2.0-8+rpi1) ...
Setting up autopoint (0.21-4) ...
Setting up libgfortran5:armhf (11.2.0-8+rpi1) ...
Setting up libubsan1:armhf (11.2.0-8+rpi1) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libcc1-0:armhf (11.2.0-8+rpi1) ...
Setting up cpp-10 (10.3.0-11+rpi1) ...
Setting up libblas-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up liblapack3:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.21-4) ...
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Setting up libtool (2.4.6-15) ...
Setting up libgcc-10-dev:armhf (10.3.0-11+rpi1) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libtmglib3:armhf (3.9.0-3) ...
Setting up liblapack-dev:armhf (3.9.0-3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up gcc-10 (10.3.0-11+rpi1) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up liblapacke:armhf (3.9.0-3) ...
Setting up libgfortran-10-dev:armhf (10.3.0-11+rpi1) ...
Setting up libtmglib-dev:armhf (3.9.0-3) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libstdc++-10-dev:armhf (10.3.0-11+rpi1) ...
Setting up g++-10 (10.3.0-11+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up liblapacke-dev:armhf (3.9.0-3) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up gfortran-10 (10.3.0-11+rpi1) ...
Setting up debhelper (13.5.2) ...
Setting up gfortran (4:10.2.1-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up sbuild-build-depends-eigensoft-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-8+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-8+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:10.2.1-1+rpi1 gfortran-10_10.3.0-11+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-8+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-8+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.37.2-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-8+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-8+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgfortran-10-dev_10.3.0-11+rpi1 libgfortran5_11.2.0-8+rpi1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-8+rpi1 libgpg-error0_1.42-3 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack-dev_3.9.0-3 liblapack3_3.9.0-3 liblapacke_3.9.0-3 liblapacke-dev_3.9.0-3 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-8+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtmglib-dev_3.9.0-3 libtmglib3_3.9.0-3 libtool_2.4.6-15 libubsan1_11.2.0-8+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-eigensoft-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig._63RCKBI/trustedkeys.kbx': General error
gpgv: Signature made Mon Sep 27 18:57:53 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./eigensoft_7.2.1+dfsg-3.dsc
dpkg-source: info: extracting eigensoft in /<<BUILDDIR>>/eigensoft-7.2.1+dfsg
dpkg-source: info: unpacking eigensoft_7.2.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking eigensoft_7.2.1+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying blas.patch
dpkg-source: info: applying lapacke.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-10051d41-75ae-4810-81d2-f4565dcfe0c8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package eigensoft
dpkg-buildpackage: info: source version 7.2.1+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_clean
/usr/bin/make -C src clobber
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
rm -f *.o */*.o */*.a nicksrc/*.o eigensrc/*.o ksrc/*.o
rm -f baseprog convertf mergeit pca smshrink eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca
cd ../bin/ ; rm -f baseprog convertf mergeit pca smshrink pcatoy smartrel smarteigenstrat twstats eigenstrat eigenstratQTL smartpca ; cd ../src
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
/usr/bin/make DEBUG_OPTIONS=-g -C src all
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o baseprog.o baseprog.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcio.o mcio.c
mcio.c: In function 'getgenos':
mcio.c:1368:5: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
1368 | system (cmd);
| ^~~~~~~~~~~~
In file included from ../include/statsubs.h:6,
from ../include/nicklib.h:4,
from ../include/admutils.h:2,
from ../include/mcio.h:11,
from mcio.c:3:
mcio.c: In function 'getindivs':
../include/strsubs.h:83:54: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
83 | #define ZALLOC(item,n,type) if ((item = (type *)calloc((n),sizeof(type))) == NULL) \
| ^~~~~~~~~~~~~~~~~~~~~~~~
mcio.c:952:3: note: in expansion of macro 'ZALLOC'
952 | ZALLOC (indivmarkers, nindiv, Indiv *);
| ^~~~~~
In file included from ../include/strsubs.h:1,
from ../include/vsubs.h:5,
from ../include/mcio.h:10,
from mcio.c:3:
/usr/include/stdlib.h:542:14: note: in a call to allocation function 'calloc' declared here
542 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
In file included from /usr/include/stdio.h:866,
from ../include/mcio.h:4,
from mcio.c:3:
In function 'printf',
inlined from 'outfiles' at mcio.c:3159:5:
/usr/include/arm-linux-gnueabihf/bits/stdio2.h:110:10: warning: '%s' directive argument is null [-Wformat-overflow=]
110 | return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o egsubs.o egsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o admutils.o admutils.c
admutils.c: In function 'setid2pops':
admutils.c:1256:31: warning: format '%s' expects a matching 'char *' argument [-Wformat=]
1256 | printf ("(setid2pops): %s not found\n");
| ~^
| |
| char *
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o h2d.o h2d.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/exclude.o eigensrc/exclude.c
/usr/bin/make -C nicksrc
make[3]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src/nicksrc'
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gauss.o gauss.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gds.o gds.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getpars.o getpars.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linsubs.o linsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sortit.o sortit.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o statsubs.o statsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsubs.o strsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vsubs.o vsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xsearch.o xsearch.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twtable.o twtable.c
ar -r libnick.a gauss.o gds.o getpars.o linsubs.o sortit.o statsubs.o strsubs.o vsubs.o xsearch.o twtable.o
ar: creating libnick.a
make[3]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src/nicksrc'
cc -Wl,-z,relro -Wl,-z,now baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o baseprog
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convertf.o convertf.c
convertf.c: In function 'main':
convertf.c:257:5: warning: implicit declaration of function 'setfamilypopnames' [-Wimplicit-function-declaration]
257 | setfamilypopnames (YES);
| ^~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now convertf.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o convertf
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mergeit.o mergeit.c
cc -Wl,-z,relro -Wl,-z,now mergeit.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o mergeit
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pca.o pca.c
pca.c: In function 'main':
pca.c:102:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
102 | fscanf (fp, "%c", &Xchar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
pca.c:167:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
167 | fscanf (fp, "%c", &Xchar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
pca.c:190:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
190 | fscanf (fp, "%c", &Xchar); /* should be \n character */
| ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigsubs.o eigensrc/eigsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigx.o eigensrc/eigx.c
cc -Wl,-z,relro -Wl,-z,now pca.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o pca
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o smshrink.o smshrink.c
smshrink.c: In function 'main':
smshrink.c:624:5: warning: implicit declaration of function 'setid2pops'; did you mean 'setsdpos'? [-Wimplicit-function-declaration]
624 | setid2pops (id2pops, indivmarkers, numindivs);
| ^~~~~~~~~~
| setsdpos
smshrink.c:774:5: warning: implicit declaration of function 'kjg_fpca' [-Wimplicit-function-declaration]
774 | kjg_fpca (numeigs, fastdim, fastiter, evals, evecs);
| ^~~~~~~~
smshrink.c:578:5: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
578 | system (buff);
| ^~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartsubs.o eigensrc/smartsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twsubs.o twsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qpsubs.o qpsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regsubs.o regsubs.c
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gval.o gval.c
gval.c: In function 'setgval':
gval.c:67:5: warning: implicit declaration of function 'getcolxz' [-Wimplicit-function-declaration]
67 | getcolxz (cc, cupt, xindex, xtypes, nrows, i, xmean, xfancy, &n0, &n1);
| ^~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_fpca.o ksrc/kjg_fpca.c
ksrc/kjg_fpca.c: In function 'kjg_fpca':
ksrc/kjg_fpca.c:31:14: warning: implicit declaration of function 'get_ncols' [-Wimplicit-function-declaration]
31 | size_t m = get_ncols ();
| ^~~~~~~~~
ksrc/kjg_fpca.c:32:14: warning: implicit declaration of function 'get_nrows' [-Wimplicit-function-declaration]
32 | size_t n = get_nrows ();
| ^~~~~~~~~
ksrc/kjg_fpca.c: In function 'kjg_fpca_XTXA':
ksrc/kjg_fpca.c:118:11: warning: implicit declaration of function 'kjg_geno_get_normalized_rows' [-Wimplicit-function-declaration]
118 | r = kjg_geno_get_normalized_rows (i, KJG_FPCA_ROWS, Y);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_gsl.o ksrc/kjg_gsl.c
ksrc/kjg_gsl.c: In function 'kjg_gsl_matrix_fscanf':
ksrc/kjg_gsl.c:38:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
38 | fscanf (stream, "%lg", &x);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now smshrink.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lm -llapacke -llapack -lpthread -o smshrink
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/pcatoy.o eigensrc/pcatoy.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/pcatoy.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/pcatoy
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartrel.o eigensrc/smartrel.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/smartrel.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o eigensrc/eigsubs.o eigensrc/eigx.o eigensrc/smartsubs.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartrel
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smarteigenstrat.o eigensrc/smarteigenstrat.c
eigensrc/smarteigenstrat.c: In function 'readpcafile':
eigensrc/smarteigenstrat.c:332:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
332 | fscanf (fppca, "%d", &K);
| ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:339:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
339 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:342:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
342 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:360:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
360 | fscanf (fppca, "%lf", &tempdouble);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now eigensrc/smarteigenstrat.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smarteigenstrat
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/twstats.o eigensrc/twstats.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/twstats.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/twstats
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eigensrc/eigenstrat.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstrat
eigensrc/eigenstrat.c: In function 'main':
eigensrc/eigenstrat.c:86:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
86 | fscanf (fp, "%c", &Xchar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:123:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
123 | fscanf (fppca, "%d", &K);
| ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:130:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
130 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:133:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
133 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:151:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
151 | fscanf (fppca, "%lf", &tempdouble);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:165:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
165 | fscanf (fppheno, "%c", &Xchar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:188:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
188 | fscanf (fppheno, "%c", &Xchar); /* should be end of file */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:244:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
244 | fscanf (fp, "%c", &Xchar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:267:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
267 | fscanf (fp, "%c", &Xchar); /* should be \n character */
| ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eigensrc/eigenstratQTL.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstratQTL
eigensrc/eigenstratQTL.c: In function 'main':
eigensrc/eigenstratQTL.c:86:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
86 | fscanf (fp, "%c", &Xchar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:123:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
123 | fscanf (fppca, "%d", &K);
| ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:130:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
130 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:133:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
133 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:151:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
151 | fscanf (fppca, "%lf", &tempdouble);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:172:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
172 | fscanf (fppheno, "%lf", &iscase[n]); /* QTL phenotype */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:174:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
174 | fscanf (fppheno, "%lf", &tempdouble); /* to check # entries */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:227:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
227 | fscanf (fp, "%c", &Xchar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:250:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
250 | fscanf (fp, "%c", &Xchar); /* should be \n character */
| ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartpca.o eigensrc/smartpca.c
eigensrc/smartpca.c: In function 'main':
eigensrc/smartpca.c:644:5: warning: implicit declaration of function 'setid2pops'; did you mean 'setsdpos'? [-Wimplicit-function-declaration]
644 | setid2pops (id2pops, indivmarkers, numindivs);
| ^~~~~~~~~~
| setsdpos
eigensrc/smartpca.c:809:5: warning: implicit declaration of function 'kjg_fpca' [-Wimplicit-function-declaration]
809 | kjg_fpca (numeigs, fastdim, fastiter, evals, evecs);
| ^~~~~~~~
eigensrc/smartpca.c:597:5: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
597 | system (buff);
| ^~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now eigensrc/smartpca.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartpca
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
cd src && make install
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
mv baseprog convertf mergeit pca smshrink eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca ../bin
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/eigensoft/ -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_install
find debian/eigensoft/usr/share/ -type f -empty -delete
# file consists only from single line with wrong interpreter
find debian/eigensoft/usr/share/ -type f -name HGDP.X.perl -delete
# Fix wrappers and drop *.perl extension in /usr/bin while keeping
# the original name in /usr/lib/debian-med/bin
mkdir -p debian/eigensoft/usr/lib/debian-med/bin
for pl in evec2pca-ped evec2pca smarteigenstrat smartpca ; do \
rm debian/eigensoft/usr/bin/${pl} ; \
sed -i \
-e "s?\(command[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
-e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
-e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(evec2pca.*\)\.perl?\1?" \
-e "s?\(${pl}\)\.perl?\1?" \
debian/eigensoft/usr/bin/${pl}.perl ; \
cp -a debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/bin/${pl} ; \
mv debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/lib/debian-med/bin ; \
done
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca-ped': No such file or directory
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca': No such file or directory
rm debian/eigensoft/usr/bin/gc.perl
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_fixperms
find debian/*/usr/share/eigensoft -type f -name "*.perl" -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/smshrink debian/eigensoft/usr/lib/eigensoft/smarteigenstrat were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/smshrink were not linked against libblas.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'eigensoft-dbgsym' in '../eigensoft-dbgsym_7.2.1+dfsg-3_armhf.deb'.
dpkg-deb: building package 'eigensoft' in '../eigensoft_7.2.1+dfsg-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../eigensoft_7.2.1+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-14T23:22:09Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
eigensoft_7.2.1+dfsg-3_armhf.changes:
-------------------------------------
Format: 1.8
Date: Mon, 27 Sep 2021 20:55:08 +0200
Source: eigensoft
Binary: eigensoft eigensoft-dbgsym
Architecture: armhf
Version: 7.2.1+dfsg-3
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
eigensoft - reduction of population bias for genetic analyses
Changes:
eigensoft (7.2.1+dfsg-3) unstable; urgency=medium
.
* Fix watchfile to detect new versions on github (routine-update)
* Standards-Version: 4.6.0 (routine-update)
* Hardening=+all
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Files:
0fb7724a7dbcf20928b67e6bb23fc4b0 1257924 debug optional eigensoft-dbgsym_7.2.1+dfsg-3_armhf.deb
3c1bfc98b99a971a28445bbb55bfab86 5346 science optional eigensoft_7.2.1+dfsg-3_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
eigensoft-dbgsym_7.2.1+dfsg-3_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 1257924 bytes: control archive=1144 bytes.
840 bytes, 12 lines control
1361 bytes, 13 lines md5sums
Package: eigensoft-dbgsym
Source: eigensoft
Version: 7.2.1+dfsg-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1604
Depends: eigensoft (= 7.2.1+dfsg-3)
Section: debug
Priority: optional
Description: debug symbols for eigensoft
Build-Ids: 2155b830341352796b9989acc2fb6c52ac4b6553 261411bbf0999c8882e9259669e350212b4c1841 275f0a50e19a28bae087a40fd50debc00879228a 2c9edc0121d617a2e7be37c36fe4bce90855abf4 2e05bc916047436ddb06ef64e32802aae960519d 37ccdee2754577f68dfbeba7caf1f7a56497d200 52d72a79d63bb0bb0969fb56b8ced619c3f59a05 7154b3849258ae034c2b531b14360dcde77f2175 c3d58edd25619fed2481b382f9d075a28e8466e5 f03eb3c8ca39c8d39ba59e8504bf1fc9acb5887c f70de04830939c307e9181bc3d271d353ec1a588 fcdf38c5f5a6f1e0c5184aa1fb22bebe77f5dc33
drwxr-xr-x root/root 0 2021-09-27 18:55 ./
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/21/
-rw-r--r-- root/root 34060 2021-09-27 18:55 ./usr/lib/debug/.build-id/21/55b830341352796b9989acc2fb6c52ac4b6553.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/26/
-rw-r--r-- root/root 312644 2021-09-27 18:55 ./usr/lib/debug/.build-id/26/1411bbf0999c8882e9259669e350212b4c1841.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/27/
-rw-r--r-- root/root 145112 2021-09-27 18:55 ./usr/lib/debug/.build-id/27/5f0a50e19a28bae087a40fd50debc00879228a.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/2c/
-rw-r--r-- root/root 12764 2021-09-27 18:55 ./usr/lib/debug/.build-id/2c/9edc0121d617a2e7be37c36fe4bce90855abf4.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/2e/
-rw-r--r-- root/root 147848 2021-09-27 18:55 ./usr/lib/debug/.build-id/2e/05bc916047436ddb06ef64e32802aae960519d.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/37/
-rw-r--r-- root/root 307368 2021-09-27 18:55 ./usr/lib/debug/.build-id/37/ccdee2754577f68dfbeba7caf1f7a56497d200.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/52/
-rw-r--r-- root/root 255024 2021-09-27 18:55 ./usr/lib/debug/.build-id/52/d72a79d63bb0bb0969fb56b8ced619c3f59a05.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/71/
-rw-r--r-- root/root 28988 2021-09-27 18:55 ./usr/lib/debug/.build-id/71/54b3849258ae034c2b531b14360dcde77f2175.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/c3/
-rw-r--r-- root/root 161432 2021-09-27 18:55 ./usr/lib/debug/.build-id/c3/d58edd25619fed2481b382f9d075a28e8466e5.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/f0/
-rw-r--r-- root/root 32688 2021-09-27 18:55 ./usr/lib/debug/.build-id/f0/3eb3c8ca39c8d39ba59e8504bf1fc9acb5887c.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/f7/
-rw-r--r-- root/root 143548 2021-09-27 18:55 ./usr/lib/debug/.build-id/f7/0de04830939c307e9181bc3d271d353ec1a588.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.build-id/fc/
-rw-r--r-- root/root 12960 2021-09-27 18:55 ./usr/lib/debug/.build-id/fc/df38c5f5a6f1e0c5184aa1fb22bebe77f5dc33.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 16848 2021-09-27 18:55 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/eigensoft.debug
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/share/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-09-27 18:55 ./usr/share/doc/eigensoft-dbgsym -> eigensoft
eigensoft_7.2.1+dfsg-3_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 245620 bytes: control archive=3280 bytes.
1149 bytes, 20 lines control
13143 bytes, 161 lines md5sums
Package: eigensoft
Version: 7.2.1+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2423
Depends: libblas3 | libblas.so.3, libc6 (>= 2.29), libgsl25 (>= 2.6), liblapack3 | liblapack.so.3, liblapacke (>= 3.9.0), perl:any
Recommends: gnuplot
Section: science
Priority: optional
Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/
Description: reduction of population bias for genetic analyses
The EIGENSOFT package combines functionality from the group's population
genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification
method (Price et al. 2006). The EIGENSTRAT method uses principal components
analysis to explicitly model ancestry differences between cases and
controls along continuous axes of variation; the resulting correction is
specific to a candidate marker's variation in frequency across ancestral
populations, minimizing spurious associations while maximizing power to
detect true associations. The EIGENSOFT package has a built-in plotting
script and supports multiple file formats and quantitative phenotypes.
drwxr-xr-x root/root 0 2021-09-27 18:55 ./
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/bin/
-rwxr-xr-x root/root 206760 2021-09-27 18:55 ./usr/bin/baseprog
-rwxr-xr-x root/root 215088 2021-09-27 18:55 ./usr/bin/convertf
-rwxr-xr-x root/root 9820 2021-09-27 18:55 ./usr/bin/eigenstrat
-rwxr-xr-x root/root 9820 2021-09-27 18:55 ./usr/bin/eigenstratQTL
-rwxr-xr-x root/root 1462 2021-09-27 18:55 ./usr/bin/evec2pca
-rwxr-xr-x root/root 2311 2021-09-27 18:55 ./usr/bin/evec2pca-ped
lrwxrwxrwx root/root 0 2021-09-27 18:55 ./usr/bin/gc-eigensoft -> ../lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root 202704 2021-09-27 18:55 ./usr/bin/mergeit
-rwxr-xr-x root/root 83552 2021-09-27 18:55 ./usr/bin/pca
-rwxr-xr-x root/root 79456 2021-09-27 18:55 ./usr/bin/pcatoy
-rwxr-xr-x root/root 2112 2021-09-27 18:55 ./usr/bin/smarteigenstrat
-rwxr-xr-x root/root 4738 2021-09-27 18:55 ./usr/bin/smartpca
-rwxr-xr-x root/root 272480 2021-09-27 18:55 ./usr/bin/smartrel
-rwxr-xr-x root/root 313492 2021-09-27 18:55 ./usr/bin/smshrink
-rwxr-xr-x root/root 145068 2021-09-27 18:55 ./usr/bin/twstats
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 2311 2021-09-27 18:55 ./usr/lib/debian-med/bin/evec2pca-ped.perl
-rwxr-xr-x root/root 1462 2021-09-27 18:55 ./usr/lib/debian-med/bin/evec2pca.perl
-rwxr-xr-x root/root 1887 2017-06-30 20:40 ./usr/lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root 2112 2021-09-27 18:55 ./usr/lib/debian-med/bin/smarteigenstrat.perl
-rwxr-xr-x root/root 4738 2021-09-27 18:55 ./usr/lib/debian-med/bin/smartpca.perl
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/lib/eigensoft/
-rwxr-xr-x root/root 202672 2021-09-27 18:55 ./usr/lib/eigensoft/smarteigenstrat
-rwxr-xr-x root/root 309388 2021-09-27 18:55 ./usr/lib/eigensoft/smartpca
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/share/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/share/doc/eigensoft/
-rw-r--r-- root/root 726 2021-09-27 18:55 ./usr/share/doc/eigensoft/README.Debian
-rw-r--r-- root/root 2660 2017-06-30 20:40 ./usr/share/doc/eigensoft/README.gz
-rw-r--r-- root/root 1288 2021-09-27 18:55 ./usr/share/doc/eigensoft/changelog.Debian.gz
-rw-r--r-- root/root 2553 2021-09-27 18:55 ./usr/share/doc/eigensoft/copyright
drwxr-xr-x root/root 0 2021-09-27 18:55 ./usr/share/doc/eigensoft/examples/
drwxr-xr-x root/root 0 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/
-rw-r--r-- root/root 17865 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/README
-rw-r--r-- root/root 1610 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ancestrymapgeno
-rw-r--r-- root/root 17 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.bed
-rw-r--r-- root/root 42 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.eigenstratgeno
-rw-r--r-- root/root 163 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind
-rw-r--r-- root/root 170 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind.packedancestrymap
-rw-r--r-- root/root 294 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.map
-rw-r--r-- root/root 384 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymap
-rw-r--r-- root/root 384 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymapgeno
-rw-r--r-- root/root 315 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ped
-rw-r--r-- root/root 140 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedind
-rw-r--r-- root/root 322 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedsnp
-rwxr-xr-x root/root 356 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.perl
-rw-r--r-- root/root 6 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pheno
-rw-r--r-- root/root 427 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.snp
-rw-r--r-- root/root 427 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.snp.packedancestrymap
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-rw-r--r-- root/root 225 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.ANCESTRYMAP.EIGENSTRAT
-rw-r--r-- root/root 212 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.EIGENSTRAT.PED
-rw-r--r-- root/root 233 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PACKEDANCESTRYMAP.ANCESTRYMAP
-rw-r--r-- root/root 315 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PACKEDPED.PACKEDANCESTRYMAP
-rw-r--r-- root/root 302 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PED.EIGENSTRAT
-rw-r--r-- root/root 295 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PED.PACKEDPED
drwxr-xr-x root/root 0 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/
-rw-r--r-- root/root 13435 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/README
-rw-r--r-- root/root 115 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq
-rw-r--r-- root/root 141 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.GC
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-rw-r--r-- root/root 115 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq
-rw-r--r-- root/root 141 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq.GC
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-rw-r--r-- root/root 65 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.eval
-rw-r--r-- root/root 42 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.geno
-rw-r--r-- root/root 170 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.ind
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-rwxr-xr-x root/root 761 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.oldstyle.perl
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-rw-r--r-- root/root 347 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca.evec
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 15668
Build-Time: 200
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 417
Job: eigensoft_7.2.1+dfsg-3
Machine Architecture: armhf
Package: eigensoft
Package-Time: 666
Source-Version: 7.2.1+dfsg-3
Space: 15668
Status: successful
Version: 7.2.1+dfsg-3
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Finished at 2021-10-14T23:22:09Z
Build needed 00:11:06, 15668k disc space