Raspbian Package Auto-Building

Build log for eigensoft (7.2.1+dfsg-1) on armhf

eigensoft7.2.1+dfsg-1armhf → 2018-07-19 04:52:57

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01

+==============================================================================+
| eigensoft 7.2.1+dfsg-1 (armhf)               Thu, 19 Jul 2018 04:40:27 +0000 |
+==============================================================================+

Package: eigensoft
Version: 7.2.1+dfsg-1
Source Version: 7.2.1+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-91d537f2-077e-4e4c-a3f8-e88bab2a0b83' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.7 MB]
Fetched 23.6 MB in 27s (863 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'eigensoft' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/eigensoft.git
Please use:
git clone https://salsa.debian.org/med-team/eigensoft.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 178 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main eigensoft 7.2.1+dfsg-1 (dsc) [2127 B]
Get:2 http://172.17.0.1/private buster-staging/main eigensoft 7.2.1+dfsg-1 (tar) [170 kB]
Get:3 http://172.17.0.1/private buster-staging/main eigensoft 7.2.1+dfsg-1 (diff) [5816 B]
Fetched 178 kB in 0s (3818 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/eigensoft-wpcE1w/eigensoft-7.2.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/eigensoft-wpcE1w' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-ZHnTVp/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-ZHnTVp/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (3169 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-ZHnTVp/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 46 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15545 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
Filtered Build-Depends: debhelper (>= 11~), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-eigensoft-dummy' in '/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive/sbuild-build-depends-eigensoft-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-eigensoft-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Sources [521 B]
Get:5 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Packages [601 B]
Fetched 2455 B in 1s (3532 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-ZHnTVp/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...

Install eigensoft build dependencies (apt-based resolver)
---------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates e2fsprogs-l10n libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
  gfortran-7 groff-base intltool-debian libarchive-zip-perl libblas-dev
  libblas3 libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl
  libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3
  libgsl-dev libgsl23 libgslcblas0 libharfbuzz0b libicu-le-hb0 libicu60
  liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1
  libpipeline1 libsigsegv2 libtimedate-perl libtmglib-dev libtmglib3 libtool
  libxml2 m4 man-db po-debconf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
  gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff liblapack-doc
  gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc
  gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
  gfortran-7 groff-base intltool-debian libarchive-zip-perl libblas-dev
  libblas3 libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl
  libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3
  libgsl-dev libgsl23 libgslcblas0 libharfbuzz0b libicu-le-hb0 libicu60
  liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1
  libpipeline1 libsigsegv2 libtimedate-perl libtmglib-dev libtmglib3 libtool
  libxml2 m4 man-db po-debconf sbuild-build-depends-eigensoft-dummy
0 upgraded, 51 newly installed, 0 to remove and 46 not upgraded.
Need to get 32.4 MB of archives.
After this operation, 119 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ZHnTVp/apt_archive ./ sbuild-build-depends-eigensoft-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8.1-2 [402 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.11-2 [73.5 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.2-2 [832 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-2 [132 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.3.0-19 [232 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.3.0-19 [5459 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.3.0-3+rpi1 [1436 B]
Get:41 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1 [103 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1 [111 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.5+dfsg-4 [77.6 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.5+dfsg-4 [697 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.5+dfsg-4 [885 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1 [1518 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1 [1577 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libtmglib3 armhf 3.8.0-1 [92.4 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf liblapacke armhf 3.8.0-1 [285 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libtmglib-dev armhf 3.8.0-1 [95.6 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf liblapacke-dev armhf 3.8.0-1 [264 kB]
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Unpacking sbuild-build-depends-eigensoft-dummy (0.invalid.0) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up libgfortran4:armhf (7.3.0-19) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.56.1-2) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-6) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up libfreetype6:armhf (2.8.1-2) ...
Setting up libmagic-mgc (1:5.33-3) ...
Setting up libmagic1:armhf (1:5.33-3) ...
Setting up libgraphite2-3:armhf (1.3.11-2) ...
Setting up libblas3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Processing triggers for libc-bin (2.27-3+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libgfortran-7-dev:armhf (7.3.0-19) ...
Setting up gfortran-7 (7.3.0-19) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgslcblas0:armhf (2.5+dfsg-4) ...
Setting up autopoint (0.19.8.1-6) ...
Setting up libfile-stripnondeterminism-perl (0.042-1) ...
Setting up gfortran (4:7.3.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libgsl23:armhf (2.5+dfsg-4) ...
Setting up libblas-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up libgsl-dev (2.5+dfsg-4) ...
Setting up liblapack3:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libharfbuzz0b:armhf (1.8.2-2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.33-3) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up liblapack-dev:armhf (3.8.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-2.1) ...
Setting up libtmglib3:armhf (3.8.0-1) ...
Setting up liblapacke:armhf (3.8.0-1) ...
Setting up libtmglib-dev:armhf (3.8.0-1) ...
Setting up liblapacke-dev:armhf (3.8.0-1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up gettext (0.19.8.1-6) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.3.5) ...
Setting up sbuild-build-depends-eigensoft-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gfortran_4:7.3.0-3+rpi1 gfortran-7_7.3.0-19 gnupg_2.2.8-1 gnupg-agent_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblas-dev_3.8.0-1 libblas3_3.8.0-1 libblkid1_2.32-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.5 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran-7-dev_7.3.0-19 libgfortran4_7.3.0-19 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libgsl-dev_2.5+dfsg-4 libgsl23_2.5+dfsg-4 libgslcblas0_2.5+dfsg-4 libharfbuzz0b_1.8.2-2 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-1 liblapack3_3.8.0-1 liblapacke_3.8.0-1 liblapacke-dev_3.8.0-1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnpth0_1.5-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam0g_1.1.8-3.7 libpcre3_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-2 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtmglib-dev_3.8.0-1 libtmglib3_3.8.0-1 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mount_2.32-0.1 multiarch-support_2.27-3+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-eigensoft-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_238-4 util-linux_2.32-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jul 16 14:17:17 2018 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./eigensoft_7.2.1+dfsg-1.dsc
dpkg-source: info: extracting eigensoft in /<<BUILDDIR>>/eigensoft-7.2.1+dfsg
dpkg-source: info: unpacking eigensoft_7.2.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking eigensoft_7.2.1+dfsg-1.debian.tar.xz
dpkg-source: info: applying blas.patch
dpkg-source: info: applying lapacke.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-91d537f2-077e-4e4c-a3f8-e88bab2a0b83
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package eigensoft
dpkg-buildpackage: info: source version 7.2.1+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build eigensoft-7.2.1+dfsg
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean 
   debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_clean
/usr/bin/make -C src clobber
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
rm -f *.o */*.o */*.a nicksrc/*.o eigensrc/*.o ksrc/*.o
rm -f baseprog convertf mergeit pca smshrink eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca
cd ../bin/ ; rm -f baseprog convertf mergeit pca smshrink pcatoy smartrel smarteigenstrat twstats eigenstrat eigenstratQTL smartpca ; cd ../src
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
 debian/rules build-arch
dh build-arch 
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
/usr/bin/make DEBUG_OPTIONS=-g -C src all
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o baseprog.o baseprog.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mcio.o mcio.c
mcio.c: In function 'getgenos':
mcio.c:1368:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
     system (cmd);
     ^~~~~~~~~~~~
In file included from ../include/statsubs.h:6:0,
                 from ../include/nicklib.h:4,
                 from ../include/admutils.h:2,
                 from ../include/mcio.h:11,
                 from mcio.c:3:
mcio.c: In function 'getindivs':
../include/strsubs.h:83:54: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
 #define ZALLOC(item,n,type)      if ((item = (type *)calloc((n),sizeof(type))) == NULL) \
                                                      ^~~~~~~~~~~~~~~~~~~~~~~~
mcio.c:952:3: note: in expansion of macro 'ZALLOC'
   ZALLOC (indivmarkers, nindiv, Indiv *);
   ^~~~~~
In file included from ../include/strsubs.h:1:0,
                 from ../include/vsubs.h:5,
                 from ../include/mcio.h:10,
                 from mcio.c:3:
/usr/include/stdlib.h:541:14: note: in a call to allocation function 'calloc' declared here
 extern void *calloc (size_t __nmemb, size_t __size)
              ^~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o egsubs.o egsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o admutils.o admutils.c
admutils.c: In function 'setid2pops':
admutils.c:1256:31: warning: format '%s' expects a matching 'char *' argument [-Wformat=]
       printf ("(setid2pops): %s not found\n");
                              ~^
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o h2d.o h2d.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/exclude.o eigensrc/exclude.c
/usr/bin/make -C nicksrc
make[3]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src/nicksrc'
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gauss.o gauss.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gds.o gds.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o getpars.o getpars.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o linsubs.o linsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o sortit.o sortit.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o statsubs.o statsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o strsubs.o strsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o vsubs.o vsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o xsearch.o xsearch.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2  -c -o twtable.o twtable.c
ar -r libnick.a gauss.o gds.o getpars.o linsubs.o sortit.o statsubs.o strsubs.o vsubs.o xsearch.o twtable.o
ar: creating libnick.a
make[3]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src/nicksrc'
cc -Wl,-z,relro -Wl,-z,now  baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o baseprog
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o convertf.o convertf.c
convertf.c: In function 'main':
convertf.c:257:5: warning: implicit declaration of function 'setfamilypopnames'; did you mean 'setgenotypename'? [-Wimplicit-function-declaration]
     setfamilypopnames (YES);
     ^~~~~~~~~~~~~~~~~
     setgenotypename
cc -Wl,-z,relro -Wl,-z,now  convertf.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o convertf
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o mergeit.o mergeit.c
cc -Wl,-z,relro -Wl,-z,now  mergeit.o mcio.o admutils.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o mergeit
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o pca.o pca.c
pca.c: In function 'main':
pca.c:102:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fp, "%c", &Xchar);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
pca.c:167:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
         fscanf (fp, "%c", &Xchar);
         ^~~~~~~~~~~~~~~~~~~~~~~~~
pca.c:190:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
       fscanf (fp, "%c", &Xchar);        /* should be \n character */
       ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/eigsubs.o eigensrc/eigsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/eigx.o eigensrc/eigx.c
cc -Wl,-z,relro -Wl,-z,now  pca.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o pca
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o smshrink.o smshrink.c
smshrink.c: In function 'main':
smshrink.c:624:5: warning: implicit declaration of function 'setid2pops'; did you mean 'setsdpos'? [-Wimplicit-function-declaration]
     setid2pops (id2pops, indivmarkers, numindivs);
     ^~~~~~~~~~
     setsdpos
smshrink.c:774:5: warning: implicit declaration of function 'kjg_fpca' [-Wimplicit-function-declaration]
     kjg_fpca (numeigs, fastdim, fastiter, evals, evecs);
     ^~~~~~~~
smshrink.c:578:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
     system (buff);
     ^~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/smartsubs.o eigensrc/smartsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o twsubs.o twsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o qpsubs.o qpsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o regsubs.o regsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o gval.o gval.c
gval.c: In function 'setgval':
gval.c:67:5: warning: implicit declaration of function 'getcolxz'; did you mean 'get_ncols'? [-Wimplicit-function-declaration]
     getcolxz (cc, cupt, xindex, xtypes, nrows, i, xmean, xfancy, &n0, &n1);
     ^~~~~~~~
     get_ncols
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o ksrc/kjg_fpca.o ksrc/kjg_fpca.c
ksrc/kjg_fpca.c: In function 'kjg_fpca':
ksrc/kjg_fpca.c:31:14: warning: implicit declaration of function 'get_ncols'; did you mean 'gethpos'? [-Wimplicit-function-declaration]
   size_t m = get_ncols ();
              ^~~~~~~~~
              gethpos
ksrc/kjg_fpca.c:32:14: warning: implicit declaration of function 'get_nrows'; did you mean 'gethpos'? [-Wimplicit-function-declaration]
   size_t n = get_nrows ();
              ^~~~~~~~~
              gethpos
ksrc/kjg_fpca.c: In function 'kjg_fpca_XTXA':
ksrc/kjg_fpca.c:118:11: warning: implicit declaration of function 'kjg_geno_get_normalized_rows' [-Wimplicit-function-declaration]
       r = kjg_geno_get_normalized_rows (i, KJG_FPCA_ROWS, Y);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o ksrc/kjg_gsl.o ksrc/kjg_gsl.c
ksrc/kjg_gsl.c: In function 'kjg_gsl_matrix_fscanf':
ksrc/kjg_gsl.c:38:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
    fscanf (stream, "%lg", &x);
    ^~~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now  smshrink.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o  -lgsl -lblas -lm -llapacke -llapack -lpthread -o smshrink
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/pcatoy.o eigensrc/pcatoy.c
cc -Wl,-z,relro -Wl,-z,now  eigensrc/pcatoy.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/pcatoy
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/smartrel.o eigensrc/smartrel.c
cc -Wl,-z,relro -Wl,-z,now  eigensrc/smartrel.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o eigensrc/eigsubs.o eigensrc/eigx.o eigensrc/smartsubs.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartrel
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/smarteigenstrat.o eigensrc/smarteigenstrat.c
eigensrc/smarteigenstrat.c: In function 'readpcafile':
eigensrc/smarteigenstrat.c:332:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
   fscanf (fppca, "%d", &K);
   ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:339:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:342:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
       fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:360:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
   fscanf (fppca, "%lf", &tempdouble);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now  eigensrc/smarteigenstrat.o mcio.o admutils.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smarteigenstrat
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/twstats.o eigensrc/twstats.c
cc -Wl,-z,relro -Wl,-z,now  eigensrc/twstats.o nicksrc/libnick.a  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/twstats
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  eigensrc/eigenstrat.c  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstrat
eigensrc/eigenstrat.c: In function 'main':
eigensrc/eigenstrat.c:86:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fp, "%c", &Xchar);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:123:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
   fscanf (fppca, "%d", &K);
   ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:130:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:133:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
       fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:151:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
   fscanf (fppca, "%lf", &tempdouble);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:165:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fppheno, "%c", &Xchar);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:188:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
   fscanf (fppheno, "%c", &Xchar); /* should be end of file */
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:244:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
       fscanf (fp, "%c", &Xchar);
       ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:267:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fp, "%c", &Xchar); /* should be \n character */
     ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  eigensrc/eigenstratQTL.c  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstratQTL
eigensrc/eigenstratQTL.c: In function 'main':
eigensrc/eigenstratQTL.c:86:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fp, "%c", &Xchar);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:123:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
   fscanf (fppca, "%d", &K);
   ^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:130:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:133:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
       fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:151:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
   fscanf (fppca, "%lf", &tempdouble);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:172:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fppheno, "%lf", &iscase[n]); /* QTL phenotype */
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:174:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
   fscanf (fppheno, "%lf", &tempdouble); /* to check # entries */
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:227:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
       fscanf (fp, "%c", &Xchar);
       ^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:250:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
     fscanf (fp, "%c", &Xchar); /* should be \n character */
     ^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2  -c -o eigensrc/smartpca.o eigensrc/smartpca.c
eigensrc/smartpca.c: In function 'main':
eigensrc/smartpca.c:644:5: warning: implicit declaration of function 'setid2pops'; did you mean 'setsdpos'? [-Wimplicit-function-declaration]
     setid2pops (id2pops, indivmarkers, numindivs);
     ^~~~~~~~~~
     setsdpos
eigensrc/smartpca.c:809:5: warning: implicit declaration of function 'kjg_fpca' [-Wimplicit-function-declaration]
     kjg_fpca (numeigs, fastdim, fastiter, evals, evecs);
     ^~~~~~~~
eigensrc/smartpca.c:597:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
     system (buff);
     ^~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now  eigensrc/smartpca.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o  -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartpca
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
cd src && make install
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
mv baseprog convertf mergeit pca smshrink eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca ../bin
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch 
   dh_testroot -a
   dh_prep -a
   debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_install
find debian/eigensoft/usr/share/ -type f -empty -delete
# file consists only from single line with wrong interpreter
find debian/eigensoft/usr/share/ -type f -name HGDP.X.perl -delete
# Fix wrappers and drop *.perl extension in /usr/bin while keeping
# the original name in /usr/lib/debian-med/bin
mkdir -p debian/eigensoft/usr/lib/debian-med/bin
for pl in evec2pca-ped evec2pca smarteigenstrat smartpca ; do \
    rm debian/eigensoft/usr/bin/${pl} ; \
    sed -i \
        -e "s?\(command[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
                -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
                -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(evec2pca.*\)\.perl?\1?" \
                -e "s?\(${pl}\)\.perl?\1?" \
        debian/eigensoft/usr/bin/${pl}.perl ; \
    cp -a debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/bin/${pl} ; \
    mv debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/lib/debian-med/bin ; \
done
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca-ped': No such file or directory
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca': No such file or directory
rm debian/eigensoft/usr/bin/gc.perl
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_fixperms
find debian/*/usr/share/eigensoft -type f -name "*.perl" -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
   dh_missing -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/smshrink were not linked against libblas.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/smshrink were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'eigensoft' in '../eigensoft_7.2.1+dfsg-1_armhf.deb'.
dpkg-deb: building package 'eigensoft-dbgsym' in '../eigensoft-dbgsym_7.2.1+dfsg-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../eigensoft_7.2.1+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build eigensoft-7.2.1+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-07-19T04:51:11Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


eigensoft_7.2.1+dfsg-1_armhf.changes:
-------------------------------------

Format: 1.8
Date: Mon, 16 Jul 2018 16:10:33 +0200
Source: eigensoft
Binary: eigensoft
Architecture: armhf
Version: 7.2.1+dfsg-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 eigensoft  - reduction of population bias for genetic analyses
Changes:
 eigensoft (7.2.1+dfsg-1) unstable; urgency=medium
 .
   [ Steffen Moeller ]
   * debian/upstream/metadata; Added references to registries and paper
 .
   [ Andreas Tille ]
   * New upstream version
   * d/watch: Source is now on Github
   * d/rules: Do not parse d/changelog
   * debhelper 11
   * Point Vcs fields to salsa.debian.org
   * Standards-Version: 4.1.5
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 06832715e14ca061cfcff6973b26dab0ba9a4171 5045 eigensoft_7.2.1+dfsg-1_armhf.buildinfo
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Checksums-Sha256:
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 2a8bf16bc4ca4499a96e328d1ea3ffcb66af60e7a3236b7cb4cb271728aa9bfc 5045 eigensoft_7.2.1+dfsg-1_armhf.buildinfo
 657459cf0879c61814c47582562fdcf116c729d114d38a903c5e97b672fe9a66 275032 eigensoft_7.2.1+dfsg-1_armhf.deb
Files:
 4bc27e3026d8b73e43ddbea1f2200257 1057892 debug optional eigensoft-dbgsym_7.2.1+dfsg-1_armhf.deb
 b771954cb1d55638835d36ac13b8566a 5045 science optional eigensoft_7.2.1+dfsg-1_armhf.buildinfo
 963791b47b8a538e856db4c25b1d45e4 275032 science optional eigensoft_7.2.1+dfsg-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


eigensoft-dbgsym_7.2.1+dfsg-1_armhf.deb
---------------------------------------

 new Debian package, version 2.0.
 size 1057892 bytes: control archive=1096 bytes.
     840 bytes,    12 lines      control              
    1272 bytes,    12 lines      md5sums              
 Package: eigensoft-dbgsym
 Source: eigensoft
 Version: 7.2.1+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1397
 Depends: eigensoft (= 7.2.1+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for eigensoft
 Build-Ids: 149615ec0c20ea22952c1123f209d753e164d661 2e1d09b35bb9774becc0dca4267144ae127ff5d2 4ff071592197fd134730e49f73658075f708cae6 708eb495157b738d72f3cbe1928a7562043055b0 77fb501a8c096a7b05ed173493ea6fbb90aec4bc 8f617accb8d02036fac0aafe54e1f9a9eeaefccf 98b4f3adbd1a20b557e670e06e2f4d67127bb99f d04ca13ca784d8cc2402b9390ce660f385de17eb dcb3cb05c10ded5941e7c419812d788bd7d5b2bf de665f0776e7671e62b91e2b9d7d2f4dfab893dc f120f8b626283dba1862b180961214f19085283b ff0fb6c51b484e4f7f9bfd9ba9c83c14a69b43aa

drwxr-xr-x root/root         0 2018-07-16 14:10 ./
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/14/
-rw-r--r-- root/root    141316 2018-07-16 14:10 ./usr/lib/debug/.build-id/14/9615ec0c20ea22952c1123f209d753e164d661.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/2e/
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drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/4f/
-rw-r--r-- root/root    125092 2018-07-16 14:10 ./usr/lib/debug/.build-id/4f/f071592197fd134730e49f73658075f708cae6.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root     12292 2018-07-16 14:10 ./usr/lib/debug/.build-id/70/8eb495157b738d72f3cbe1928a7562043055b0.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/77/
-rw-r--r-- root/root     32912 2018-07-16 14:10 ./usr/lib/debug/.build-id/77/fb501a8c096a7b05ed173493ea6fbb90aec4bc.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/8f/
-rw-r--r-- root/root     12176 2018-07-16 14:10 ./usr/lib/debug/.build-id/8f/617accb8d02036fac0aafe54e1f9a9eeaefccf.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/98/
-rw-r--r-- root/root    273328 2018-07-16 14:10 ./usr/lib/debug/.build-id/98/b4f3adbd1a20b557e670e06e2f4d67127bb99f.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/d0/
-rw-r--r-- root/root     33556 2018-07-16 14:10 ./usr/lib/debug/.build-id/d0/4ca13ca784d8cc2402b9390ce660f385de17eb.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/dc/
-rw-r--r-- root/root     29076 2018-07-16 14:10 ./usr/lib/debug/.build-id/dc/b3cb05c10ded5941e7c419812d788bd7d5b2bf.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root    124144 2018-07-16 14:10 ./usr/lib/debug/.build-id/de/665f0776e7671e62b91e2b9d7d2f4dfab893dc.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/f1/
-rw-r--r-- root/root    218120 2018-07-16 14:10 ./usr/lib/debug/.build-id/f1/20f8b626283dba1862b180961214f19085283b.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root    130176 2018-07-16 14:10 ./usr/lib/debug/.build-id/ff/0fb6c51b484e4f7f9bfd9ba9c83c14a69b43aa.debug
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-07-16 14:10 ./usr/share/doc/eigensoft-dbgsym -> eigensoft


eigensoft_7.2.1+dfsg-1_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 275032 bytes: control archive=3420 bytes.
    1138 bytes,    20 lines      control              
   13164 bytes,   161 lines      md5sums              
 Package: eigensoft
 Version: 7.2.1+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2318
 Depends: libblas3 | libblas.so.3, libc6 (>= 2.23), libgsl23 (>= 2.5), liblapack3 | liblapack.so.3, liblapacke, perl:any
 Recommends: gnuplot
 Section: science
 Priority: optional
 Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/
 Description: reduction of population bias for genetic analyses
  The EIGENSOFT package combines functionality from the group's population
  genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification
  method (Price et al. 2006). The EIGENSTRAT method uses principal components
  analysis to explicitly model ancestry differences between cases and
  controls along continuous axes of variation; the resulting correction is
  specific to a candidate marker's variation in frequency across ancestral
  populations, minimizing spurious associations while maximizing power to
  detect true associations. The EIGENSOFT package has a built-in plotting
  script and supports multiple file formats and quantitative phenotypes.

drwxr-xr-x root/root         0 2018-07-16 14:10 ./
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/bin/
-rwxr-xr-x root/root    202528 2018-07-16 14:10 ./usr/bin/baseprog
-rwxr-xr-x root/root    210856 2018-07-16 14:10 ./usr/bin/convertf
-rwxr-xr-x root/root      9684 2018-07-16 14:10 ./usr/bin/eigenstrat
-rwxr-xr-x root/root      9684 2018-07-16 14:10 ./usr/bin/eigenstratQTL
-rwxr-xr-x root/root      1462 2018-07-16 14:10 ./usr/bin/evec2pca
-rwxr-xr-x root/root      2311 2018-07-16 14:10 ./usr/bin/evec2pca-ped
lrwxrwxrwx root/root         0 2018-07-16 14:10 ./usr/bin/gc-eigensoft -> ../lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root    198472 2018-07-16 14:10 ./usr/bin/mergeit
-rwxr-xr-x root/root     83416 2018-07-16 14:10 ./usr/bin/pca
-rwxr-xr-x root/root     79320 2018-07-16 14:10 ./usr/bin/pcatoy
-rwxr-xr-x root/root      2112 2018-07-16 14:10 ./usr/bin/smarteigenstrat
-rwxr-xr-x root/root      4738 2018-07-16 14:10 ./usr/bin/smartpca
-rwxr-xr-x root/root    268248 2018-07-16 14:10 ./usr/bin/smartrel
-rwxr-xr-x root/root    305164 2018-07-16 14:10 ./usr/bin/smshrink
-rwxr-xr-x root/root    144932 2018-07-16 14:10 ./usr/bin/twstats
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debian-med/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root      2311 2018-07-16 14:10 ./usr/lib/debian-med/bin/evec2pca-ped.perl
-rwxr-xr-x root/root      1462 2018-07-16 14:10 ./usr/lib/debian-med/bin/evec2pca.perl
-rwxr-xr-x root/root      1887 2017-06-30 20:40 ./usr/lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root      2112 2018-07-16 14:10 ./usr/lib/debian-med/bin/smarteigenstrat.perl
-rwxr-xr-x root/root      4738 2018-07-16 14:10 ./usr/lib/debian-med/bin/smartpca.perl
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/lib/eigensoft/
-rwxr-xr-x root/root    202536 2018-07-16 14:10 ./usr/lib/eigensoft/smarteigenstrat
-rwxr-xr-x root/root    301060 2018-07-16 14:10 ./usr/lib/eigensoft/smartpca
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/doc/eigensoft/
-rw-r--r-- root/root       726 2018-07-16 14:10 ./usr/share/doc/eigensoft/README.Debian
-rw-r--r-- root/root      2660 2017-06-30 20:40 ./usr/share/doc/eigensoft/README.gz
-rw-r--r-- root/root      1086 2018-07-16 14:10 ./usr/share/doc/eigensoft/changelog.Debian.gz
-rw-r--r-- root/root      2553 2018-07-16 14:10 ./usr/share/doc/eigensoft/copyright
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/doc/eigensoft/examples/
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/doc/eigensoft/examples/CONVERTF/
-rw-r--r-- root/root      5543 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/README.gz
-rw-r--r-- root/root      1610 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ancestrymapgeno
-rw-r--r-- root/root        17 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.bed
-rw-r--r-- root/root        42 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.eigenstratgeno
-rw-r--r-- root/root       163 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind
-rw-r--r-- root/root       170 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind.packedancestrymap
-rw-r--r-- root/root       294 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.map
-rw-r--r-- root/root       384 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymap
-rw-r--r-- root/root       384 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymapgeno
-rw-r--r-- root/root       315 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ped
-rw-r--r-- root/root       140 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedind
-rw-r--r-- root/root       322 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedsnp
-rwxr-xr-x root/root       356 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.perl
-rw-r--r-- root/root         6 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pheno
-rw-r--r-- root/root       427 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.snp
-rw-r--r-- root/root       427 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.snp.packedancestrymap
-rwxr-xr-x root/root       425 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/ind2pheno.perl
-rw-r--r-- root/root       225 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.ANCESTRYMAP.EIGENSTRAT
-rw-r--r-- root/root       212 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.EIGENSTRAT.PED
-rw-r--r-- root/root       233 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PACKEDANCESTRYMAP.ANCESTRYMAP
-rw-r--r-- root/root       315 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PACKEDPED.PACKEDANCESTRYMAP
-rw-r--r-- root/root       302 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PED.EIGENSTRAT
-rw-r--r-- root/root       295 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PED.PACKEDPED
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/
-rw-r--r-- root/root      4440 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/README.gz
-rw-r--r-- root/root       115 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq
-rw-r--r-- root/root       141 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.GC
-rw-r--r-- root/root       182 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.par
-rw-r--r-- root/root       175 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.ind
-rwxr-xr-x root/root       971 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.perl
-rw-r--r-- root/root       115 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq
-rw-r--r-- root/root       141 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq.GC
-rw-r--r-- root/root       173 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq.par
-rw-r--r-- root/root        65 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.eval
-rw-r--r-- root/root        42 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.geno
-rw-r--r-- root/root       170 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.ind
-rw-r--r-- root/root       172 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.log
-rwxr-xr-x root/root       761 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.oldstyle.perl
-rw-r--r-- root/root       101 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca
-rw-r--r-- root/root       347 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca.evec
-rw-r--r-- root/root       228 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca.par
-rwxr-xr-x root/root       903 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.perl
-rw-r--r-- root/root         6 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pheno
-rw-r--r-- root/root      3498 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.plot.pdf
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-rw-r--r-- root/root       427 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.snp
drwxr-xr-x root/root         0 2018-07-16 14:10 ./usr/share/doc/eigensoft/examples/POPGEN/
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-rw-r--r-- root/root       347 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/POPGEN/example.evec
-rw-r--r-- root/root        42 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/POPGEN/example.geno
-rw-r--r-- root/root       170 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/POPGEN/example.ind
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-rw-r--r-- root/root      3486 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/POPGEN/example.plot.pdf
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-rw-r--r-- root/root       427 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/POPGEN/example.snp
-rw-r--r-- root/root       232 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/POPGEN/grmjunk
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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 14004
Build-Time: 193
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 392
Job: eigensoft_7.2.1+dfsg-1
Machine Architecture: armhf
Package: eigensoft
Package-Time: 644
Source-Version: 7.2.1+dfsg-1
Space: 14004
Status: successful
Version: 7.2.1+dfsg-1
--------------------------------------------------------------------------------
Finished at 2018-07-19T04:51:11Z
Build needed 00:10:44, 14004k disc space