eigensoft →
7.2.1+dfsg-1+b1 →
armhf → 2018-10-11 15:03:03
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| eigensoft 7.2.1+dfsg-1+b1 (armhf) Thu, 11 Oct 2018 14:59:04 +0000 |
+==============================================================================+
Package: eigensoft
Version: 7.2.1+dfsg-1+b1
Source Version: 7.2.1+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-18a61761-8c76-4427-ad3a-47bad32b7fb0' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.8 MB]
Fetched 23.9 MB in 14s (1692 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'eigensoft' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/eigensoft.git
Please use:
git clone https://salsa.debian.org/med-team/eigensoft.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 178 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main eigensoft 7.2.1+dfsg-1 (dsc) [2127 B]
Get:2 http://172.17.0.1/private buster-staging/main eigensoft 7.2.1+dfsg-1 (tar) [170 kB]
Get:3 http://172.17.0.1/private buster-staging/main eigensoft 7.2.1+dfsg-1 (diff) [5816 B]
Fetched 178 kB in 0s (1063 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/eigensoft-MzBDh4/eigensoft-7.2.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/eigensoft-MzBDh4' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-q1HdkT/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-q1HdkT/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-q1HdkT/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (10.9 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 82 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15689 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
Filtered Build-Depends: debhelper (>= 11~), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-eigensoft-dummy' in '/<<BUILDDIR>>/resolver-q1HdkT/apt_archive/sbuild-build-depends-eigensoft-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-eigensoft-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ Sources [521 B]
Get:5 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ Packages [601 B]
Fetched 2455 B in 0s (12.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install eigensoft build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-8 debhelper
dh-autoreconf dh-strip-nondeterminism dwz file g++-8 gcc-8 gcc-8-base
gettext gettext-base gfortran gfortran-8 groff-base intltool-debian
libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3 libbsd0
libcc1-0 libcroco3 libelf1 libfile-stripnondeterminism-perl libfreetype6
libgcc-8-dev libgcc1 libgfortran-8-dev libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libgsl-dev libgsl23 libgslcblas0 libharfbuzz0b libicu-le-hb0
libicu60 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc
libmagic1 libpipeline1 libsigsegv2 libstdc++-8-dev libstdc++6 libtmglib-dev
libtmglib3 libtool libubsan1 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-8-locales dh-make gcc-8-doc libstdc++6-8-dbg libgcc1-dbg
libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg
libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg gettext-doc
libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc
libgfortran5-dbg libcoarrays-dev groff liblapack-doc gsl-ref-psdoc
| gsl-doc-pdf | gsl-doc-info | gsl-ref-html libstdc++-8-doc libtool-doc
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran
gfortran-8 groff-base intltool-debian libarchive-zip-perl libblas-dev
libblas3 libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl
libfreetype6 libgfortran-8-dev libgfortran5 libglib2.0-0 libgraphite2-3
libgsl-dev libgsl23 libgslcblas0 libharfbuzz0b libicu-le-hb0 libicu60
liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libtmglib-dev libtmglib3 libtool libxml2 m4 man-db
po-debconf sbuild-build-depends-eigensoft-dummy
The following packages will be upgraded:
cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 50 newly installed, 0 to remove and 69 not upgraded.
Need to get 51.1 MB/51.6 MB of archives.
After this operation, 119 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-q1HdkT/apt_archive ./ sbuild-build-depends-eigensoft-dummy 0.invalid.0 [888 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-7+rpi1 [30.2 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-7+rpi1 [187 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-7+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-7+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-7+rpi1 [8096 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-7+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-7+rpi1 [104 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-7+rpi1 [5939 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-7+rpi1 [1562 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-7+rpi1 [594 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-7+rpi1 [5844 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-7+rpi1 [5473 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-7+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-7 [117 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-1.1 [771 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-7 [434 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-4 [547 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.043-1 [20.2 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.043-1 [12.1 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.9.0-1+rpi1 [877 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-7 [1218 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.4.1 [989 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-7+rpi1 [205 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-7+rpi1 [248 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-7+rpi1 [5812 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.1.0-1+rpi1 [1424 B]
Get:51 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libgslcblas0 armhf 2.5+dfsg-5 [78.8 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libgsl23 armhf 2.5+dfsg-5 [703 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.5+dfsg-5 [894 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libtmglib3 armhf 3.8.0-1+b1 [91.0 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf liblapacke armhf 3.8.0-1+b1 [285 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libtmglib-dev armhf 3.8.0-1+b1 [93.8 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf liblapacke-dev armhf 3.8.0-1+b1 [264 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up cpp-8 (8.2.0-7+rpi1) ...
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Setting up libgraphite2-3:armhf (1.3.12-1) ...
Processing triggers for libc-bin (2.27-5+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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Setting up libasan5:armhf (8.2.0-7+rpi1) ...
Setting up libgfortran5:armhf (8.2.0-7+rpi1) ...
Setting up autopoint (0.19.8.1-7) ...
Setting up libfile-stripnondeterminism-perl (0.043-1) ...
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Setting up libgsl23:armhf (2.5+dfsg-5) ...
Setting up libgsl-dev (2.5+dfsg-5) ...
Setting up libharfbuzz0b:armhf (1.9.0-1+rpi1) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.34-2) ...
Setting up libblas3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up automake (1:1.16.1-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgcc-8-dev:armhf (8.2.0-7+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-7+rpi1) ...
Setting up libtool (2.4.6-4) ...
Setting up libstdc++-8-dev:armhf (8.2.0-7+rpi1) ...
Setting up libblas-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gcc-8 (8.2.0-7+rpi1) ...
Setting up g++-8 (8.2.0-7+rpi1) ...
Setting up liblapack-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtmglib3:armhf (3.8.0-1+b1) ...
Setting up gfortran-8 (8.2.0-7+rpi1) ...
Setting up liblapacke:armhf (3.8.0-1+b1) ...
Setting up libtmglib-dev:armhf (3.8.0-1+b1) ...
Setting up gfortran (4:8.1.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up liblapacke-dev:armhf (3.8.0-1+b1) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.043-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up gettext (0.19.8.1-7) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.4.1) ...
Setting up sbuild-build-depends-eigensoft-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-2+rpi1 dpkg-dev_1.19.0.5 g++-8_8.2.0-7+rpi1 gcc-8_8.2.0-7+rpi1 libc6-dev_2.27-5+rpi1 libstdc++-8-dev_8.2.0-7+rpi1 libstdc++6_8.2.0-7+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.117 apt_1.6.3 autoconf_2.69-11 automake_1:1.16.1-1.1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-2+rpi1 binutils-arm-linux-gnueabihf_2.31.1-2+rpi1 binutils-common_2.31.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.2.0-7+rpi1 dash_0.5.8-2.10 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.4.1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.043-1 diffutils_1:3.6-1 dirmngr_2.2.9-1+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 e2fsprogs-l10n_1.44.3-1 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20171230-2 g++_4:8.1.0-1+rpi1 g++-8_8.2.0-7+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-7+rpi1 gcc-8-base_8.2.0-7+rpi1 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gfortran_4:8.1.0-1+rpi1 gfortran-8_8.2.0-7+rpi1 gnupg_2.2.9-1+rpi1 gnupg-agent_2.2.9-1+rpi1 gnupg-l10n_2.2.9-1+rpi1 gnupg-utils_2.2.9-1+rpi1 gpg_2.2.9-1+rpi1 gpg-agent_2.2.9-1+rpi1 gpg-wks-client_2.2.9-1+rpi1 gpg-wks-server_2.2.9-1+rpi1 gpgconf_2.2.9-1+rpi1 gpgsm_2.2.9-1+rpi1 gpgv_2.2.9-1+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.13-8 libapt-pkg5.0_1.6.3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-7+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-7+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.31.1-2+rpi1 libblas-dev_3.8.0-1+b1 libblas3_3.8.0-1+b1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-5+rpi1 libc-dev-bin_2.27-5+rpi1 libc6_2.27-5+rpi1 libc6-dev_2.27-5+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-7+rpi1 libcom-err2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.10-1 libdebconfclient0_0.244 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.3-1 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.043-1 libfreetype6_2.8.1-2 libgcc-8-dev_8.2.0-7+rpi1 libgcc1_1:8.2.0-7+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran-8-dev_8.2.0-7+rpi1 libgfortran5_8.2.0-7+rpi1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1 libgomp1_8.2.0-7+rpi1 libgpg-error0_1.32-1 libgraphite2-3_1.3.12-1 libgsl-dev_2.5+dfsg-5 libgsl23_2.5+dfsg-5 libgslcblas0_2.5+dfsg-5 libharfbuzz0b_1.9.0-1+rpi1 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-2.2 libip4tc0_1.6.2-1.1 libisl19_0.20-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-1+b1 liblapack3_3.8.0-1+b1 liblapacke_3.8.0-1+b1 liblapacke-dev_3.8.0-1+b1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180714-1 libncurses6_6.1+20180714-1 libncursesw5_6.1+20180714-1 libncursesw6_6.1+20180714-1 libnettle6_3.4-1 libnpth0_1.6-1 libnss-systemd_239-7 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_239-7 libpam0g_1.1.8-3.7 libpcre3_2:8.39-10 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0h-4 libstdc++-8-dev_8.2.0-7+rpi1 libstdc++6_8.2.0-7+rpi1 libsystemd0_239-7 libtasn1-6_4.13-3 libtinfo5_6.1+20180714-1 libtinfo6_6.1+20180714-1 libtmglib-dev_3.8.0-1+b1 libtmglib3_3.8.0-1+b1 libtool_2.4.6-4 libubsan1_8.2.0-7+rpi1 libudev1_239-7 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-93 man-db_2.8.4-2 mawk_1.3.3-17 mount_2.32.1-0.1 multiarch-support_2.27-5+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180714-1 ncurses-bin_6.1+20180714-1 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-eigensoft-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7 systemd-sysv_239-7 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_239-7 util-linux_2.32.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jul 16 14:17:17 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./eigensoft_7.2.1+dfsg-1.dsc
dpkg-source: info: extracting eigensoft in /<<BUILDDIR>>/eigensoft-7.2.1+dfsg
dpkg-source: info: unpacking eigensoft_7.2.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking eigensoft_7.2.1+dfsg-1.debian.tar.xz
dpkg-source: info: applying blas.patch
dpkg-source: info: applying lapacke.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 7.2.1+dfsg-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-18a61761-8c76-4427-ad3a-47bad32b7fb0
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package eigensoft
dpkg-buildpackage: info: source version 7.2.1+dfsg-1+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build eigensoft-7.2.1+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_clean
/usr/bin/make -C src clobber
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
rm -f *.o */*.o */*.a nicksrc/*.o eigensrc/*.o ksrc/*.o
rm -f baseprog convertf mergeit pca smshrink eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca
cd ../bin/ ; rm -f baseprog convertf mergeit pca smshrink pcatoy smartrel smarteigenstrat twstats eigenstrat eigenstratQTL smartpca ; cd ../src
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
/usr/bin/make DEBUG_OPTIONS=-g -C src all
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o baseprog.o baseprog.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcio.o mcio.c
mcio.c: In function 'getgenos':
mcio.c:1368:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
system (cmd);
^~~~~~~~~~~~
In file included from ../include/statsubs.h:6,
from ../include/nicklib.h:4,
from ../include/admutils.h:2,
from ../include/mcio.h:11,
from mcio.c:3:
mcio.c: In function 'getindivs':
../include/strsubs.h:83:54: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=]
#define ZALLOC(item,n,type) if ((item = (type *)calloc((n),sizeof(type))) == NULL) \
^~~~~~~~~~~~~~~~~~~~~~~~
mcio.c:952:3: note: in expansion of macro 'ZALLOC'
ZALLOC (indivmarkers, nindiv, Indiv *);
^~~~~~
In file included from ../include/strsubs.h:1,
from ../include/vsubs.h:5,
from ../include/mcio.h:10,
from mcio.c:3:
/usr/include/stdlib.h:541:14: note: in a call to allocation function 'calloc' declared here
extern void *calloc (size_t __nmemb, size_t __size)
^~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o egsubs.o egsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o admutils.o admutils.c
admutils.c: In function 'setid2pops':
admutils.c:1256:31: warning: format '%s' expects a matching 'char *' argument [-Wformat=]
printf ("(setid2pops): %s not found\n");
~^
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o h2d.o h2d.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/exclude.o eigensrc/exclude.c
/usr/bin/make -C nicksrc
make[3]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src/nicksrc'
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gauss.o gauss.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gds.o gds.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getpars.o getpars.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linsubs.o linsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sortit.o sortit.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o statsubs.o statsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsubs.o strsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vsubs.o vsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xsearch.o xsearch.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twtable.o twtable.c
ar -r libnick.a gauss.o gds.o getpars.o linsubs.o sortit.o statsubs.o strsubs.o vsubs.o xsearch.o twtable.o
ar: creating libnick.a
make[3]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src/nicksrc'
cc -Wl,-z,relro -Wl,-z,now baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o baseprog
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convertf.o convertf.c
convertf.c: In function 'main':
convertf.c:257:5: warning: implicit declaration of function 'setfamilypopnames'; did you mean 'setgenotypename'? [-Wimplicit-function-declaration]
setfamilypopnames (YES);
^~~~~~~~~~~~~~~~~
setgenotypename
cc -Wl,-z,relro -Wl,-z,now convertf.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o convertf
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mergeit.o mergeit.c
cc -Wl,-z,relro -Wl,-z,now mergeit.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o mergeit
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pca.o pca.c
pca.c: In function 'main':
pca.c:102:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^~~~~~~~~~~~~~~~~~~~~~~~~
pca.c:167:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^~~~~~~~~~~~~~~~~~~~~~~~~
pca.c:190:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar); /* should be \n character */
^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigsubs.o eigensrc/eigsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigx.o eigensrc/eigx.c
cc -Wl,-z,relro -Wl,-z,now pca.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o pca
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o smshrink.o smshrink.c
smshrink.c: In function 'main':
smshrink.c:624:5: warning: implicit declaration of function 'setid2pops'; did you mean 'setsdpos'? [-Wimplicit-function-declaration]
setid2pops (id2pops, indivmarkers, numindivs);
^~~~~~~~~~
setsdpos
smshrink.c:774:5: warning: implicit declaration of function 'kjg_fpca' [-Wimplicit-function-declaration]
kjg_fpca (numeigs, fastdim, fastiter, evals, evecs);
^~~~~~~~
smshrink.c:578:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
system (buff);
^~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartsubs.o eigensrc/smartsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twsubs.o twsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qpsubs.o qpsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regsubs.o regsubs.c
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gval.o gval.c
gval.c: In function 'setgval':
gval.c:67:5: warning: implicit declaration of function 'getcolxz'; did you mean 'get_ncols'? [-Wimplicit-function-declaration]
getcolxz (cc, cupt, xindex, xtypes, nrows, i, xmean, xfancy, &n0, &n1);
^~~~~~~~
get_ncols
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_fpca.o ksrc/kjg_fpca.c
ksrc/kjg_fpca.c: In function 'kjg_fpca':
ksrc/kjg_fpca.c:31:14: warning: implicit declaration of function 'get_ncols'; did you mean 'gethpos'? [-Wimplicit-function-declaration]
size_t m = get_ncols ();
^~~~~~~~~
gethpos
ksrc/kjg_fpca.c:32:14: warning: implicit declaration of function 'get_nrows'; did you mean 'gethpos'? [-Wimplicit-function-declaration]
size_t n = get_nrows ();
^~~~~~~~~
gethpos
ksrc/kjg_fpca.c: In function 'kjg_fpca_XTXA':
ksrc/kjg_fpca.c:118:11: warning: implicit declaration of function 'kjg_geno_get_normalized_rows' [-Wimplicit-function-declaration]
r = kjg_geno_get_normalized_rows (i, KJG_FPCA_ROWS, Y);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_gsl.o ksrc/kjg_gsl.c
ksrc/kjg_gsl.c: In function 'kjg_gsl_matrix_fscanf':
ksrc/kjg_gsl.c:38:4: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (stream, "%lg", &x);
^~~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now smshrink.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lm -llapacke -llapack -lpthread -o smshrink
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/pcatoy.o eigensrc/pcatoy.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/pcatoy.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/pcatoy
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartrel.o eigensrc/smartrel.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/smartrel.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o eigensrc/eigsubs.o eigensrc/eigx.o eigensrc/smartsubs.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartrel
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smarteigenstrat.o eigensrc/smarteigenstrat.c
eigensrc/smarteigenstrat.c: In function 'readpcafile':
eigensrc/smarteigenstrat.c:332:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%d", &K);
^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:339:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:342:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/smarteigenstrat.c:360:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now eigensrc/smarteigenstrat.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smarteigenstrat
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/twstats.o eigensrc/twstats.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/twstats.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/twstats
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eigensrc/eigenstrat.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstrat
eigensrc/eigenstrat.c: In function 'main':
eigensrc/eigenstrat.c:86:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:123:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%d", &K);
^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:130:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:133:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:151:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:165:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppheno, "%c", &Xchar);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:188:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppheno, "%c", &Xchar); /* should be end of file */
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:244:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstrat.c:267:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar); /* should be \n character */
^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eigensrc/eigenstratQTL.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstratQTL
eigensrc/eigenstratQTL.c: In function 'main':
eigensrc/eigenstratQTL.c:86:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:123:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%d", &K);
^~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:130:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:133:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:151:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:172:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppheno, "%lf", &iscase[n]); /* QTL phenotype */
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:174:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppheno, "%lf", &tempdouble); /* to check # entries */
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:227:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^~~~~~~~~~~~~~~~~~~~~~~~~
eigensrc/eigenstratQTL.c:250:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar); /* should be \n character */
^~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartpca.o eigensrc/smartpca.c
eigensrc/smartpca.c: In function 'main':
eigensrc/smartpca.c:644:5: warning: implicit declaration of function 'setid2pops'; did you mean 'setsdpos'? [-Wimplicit-function-declaration]
setid2pops (id2pops, indivmarkers, numindivs);
^~~~~~~~~~
setsdpos
eigensrc/smartpca.c:809:5: warning: implicit declaration of function 'kjg_fpca' [-Wimplicit-function-declaration]
kjg_fpca (numeigs, fastdim, fastiter, evals, evecs);
^~~~~~~~
eigensrc/smartpca.c:597:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
system (buff);
^~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now eigensrc/smartpca.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartpca
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
cd src && make install
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
mv baseprog convertf mergeit pca smshrink eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca ../bin
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_install
find debian/eigensoft/usr/share/ -type f -empty -delete
# file consists only from single line with wrong interpreter
find debian/eigensoft/usr/share/ -type f -name HGDP.X.perl -delete
# Fix wrappers and drop *.perl extension in /usr/bin while keeping
# the original name in /usr/lib/debian-med/bin
mkdir -p debian/eigensoft/usr/lib/debian-med/bin
for pl in evec2pca-ped evec2pca smarteigenstrat smartpca ; do \
rm debian/eigensoft/usr/bin/${pl} ; \
sed -i \
-e "s?\(command[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
-e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
-e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(evec2pca.*\)\.perl?\1?" \
-e "s?\(${pl}\)\.perl?\1?" \
debian/eigensoft/usr/bin/${pl}.perl ; \
cp -a debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/bin/${pl} ; \
mv debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/lib/debian-med/bin ; \
done
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca-ped': No such file or directory
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca': No such file or directory
rm debian/eigensoft/usr/bin/gc.perl
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_fixperms
find debian/*/usr/share/eigensoft -type f -name "*.perl" -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-7.2.1+dfsg'
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/smshrink debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/eigenstrat were not linked against libblas.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/smshrink debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/eigenstrat were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'eigensoft' in '../eigensoft_7.2.1+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'eigensoft-dbgsym' in '../eigensoft-dbgsym_7.2.1+dfsg-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../eigensoft_7.2.1+dfsg-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build eigensoft-7.2.1+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-10-11T15:03:01Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
eigensoft_7.2.1+dfsg-1+b1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Mon, 16 Jul 2018 16:10:33 +0200
Source: eigensoft (7.2.1+dfsg-1)
Binary: eigensoft
Binary-Only: yes
Architecture: armhf
Version: 7.2.1+dfsg-1+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
eigensoft - reduction of population bias for genetic analyses
Changes:
eigensoft (7.2.1+dfsg-1+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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7a4b5d194ddd7b8fc98744191cc4f6c75dceff62 5395 eigensoft_7.2.1+dfsg-1+b1_armhf.buildinfo
b37fa1ed7173728a278d9dc4078b8a0a783d7dac 273316 eigensoft_7.2.1+dfsg-1+b1_armhf.deb
Checksums-Sha256:
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221e668c55ef1a7a9ec15f101220dd92ca1d94039868d755387fbd128b6af287 5395 eigensoft_7.2.1+dfsg-1+b1_armhf.buildinfo
0eeba5f5392f484861f84f0f7c66cf0255870b636cdd2daf7bad6a3d70872935 273316 eigensoft_7.2.1+dfsg-1+b1_armhf.deb
Files:
bf8f5dc164d9ddb88a8504a9b198b6d5 1284216 debug optional eigensoft-dbgsym_7.2.1+dfsg-1+b1_armhf.deb
f87a63145c8c3d539e1f67c8957f7784 5395 science optional eigensoft_7.2.1+dfsg-1+b1_armhf.buildinfo
b7290e958dbe2722027371c129008178 273316 science optional eigensoft_7.2.1+dfsg-1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
eigensoft-dbgsym_7.2.1+dfsg-1+b1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 1284216 bytes: control archive=1104 bytes.
861 bytes, 12 lines control
1272 bytes, 12 lines md5sums
Package: eigensoft-dbgsym
Source: eigensoft (7.2.1+dfsg-1)
Version: 7.2.1+dfsg-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1626
Depends: eigensoft (= 7.2.1+dfsg-1+b1)
Section: debug
Priority: optional
Description: debug symbols for eigensoft
Build-Ids: 0056675b97db83a00d0ae57b682fa27eb7cd0320 1696a9364f4f5f5250d10a355460adc97b59d124 1903c8dd3081a5a23262e88d10d490f93c1a38e3 3624520b28cbcfa2005315a2d5554dfb15592cb3 3e858d1f4dc78488b99e5aa5e8ff8a36f71b9e61 8888d203092091b5754fd9929440fe82b5315801 8cd839809aa95df373f71177fd7653ae5392dcdf a54df82208436ead5d0b191cd5bbb4916fef0ca3 d9e1ea9f770ad1aae642805749db304264c17b33 dfbc4ecd9e3e059d231fb6e7e98fc19bbfd5c167 eef165a5286b5e0f05c7257f38c6214a9ca8f2e7 feaf6b480d896bd4b79b07ff2288d3389c026a80
drwxr-xr-x root/root 0 2018-07-16 14:10 ./
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/00/
-rw-r--r-- root/root 163932 2018-07-16 14:10 ./usr/lib/debug/.build-id/00/56675b97db83a00d0ae57b682fa27eb7cd0320.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/16/
-rw-r--r-- root/root 259852 2018-07-16 14:10 ./usr/lib/debug/.build-id/16/96a9364f4f5f5250d10a355460adc97b59d124.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/19/
-rw-r--r-- root/root 146056 2018-07-16 14:10 ./usr/lib/debug/.build-id/19/03c8dd3081a5a23262e88d10d490f93c1a38e3.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/36/
-rw-r--r-- root/root 30600 2018-07-16 14:10 ./usr/lib/debug/.build-id/36/24520b28cbcfa2005315a2d5554dfb15592cb3.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/3e/
-rw-r--r-- root/root 35716 2018-07-16 14:10 ./usr/lib/debug/.build-id/3e/858d1f4dc78488b99e5aa5e8ff8a36f71b9e61.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/88/
-rw-r--r-- root/root 319344 2018-07-16 14:10 ./usr/lib/debug/.build-id/88/88d203092091b5754fd9929440fe82b5315801.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/8c/
-rw-r--r-- root/root 14048 2018-07-16 14:10 ./usr/lib/debug/.build-id/8c/d839809aa95df373f71177fd7653ae5392dcdf.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/a5/
-rw-r--r-- root/root 151324 2018-07-16 14:10 ./usr/lib/debug/.build-id/a5/4df82208436ead5d0b191cd5bbb4916fef0ca3.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/d9/
-rw-r--r-- root/root 13848 2018-07-16 14:10 ./usr/lib/debug/.build-id/d9/e1ea9f770ad1aae642805749db304264c17b33.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/df/
-rw-r--r-- root/root 34092 2018-07-16 14:10 ./usr/lib/debug/.build-id/df/bc4ecd9e3e059d231fb6e7e98fc19bbfd5c167.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/ee/
-rw-r--r-- root/root 144496 2018-07-16 14:10 ./usr/lib/debug/.build-id/ee/f165a5286b5e0f05c7257f38c6214a9ca8f2e7.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debug/.build-id/fe/
-rw-r--r-- root/root 324644 2018-07-16 14:10 ./usr/lib/debug/.build-id/fe/af6b480d896bd4b79b07ff2288d3389c026a80.debug
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/share/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-07-16 14:10 ./usr/share/doc/eigensoft-dbgsym -> eigensoft
eigensoft_7.2.1+dfsg-1+b1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 273316 bytes: control archive=3464 bytes.
1174 bytes, 21 lines control
13248 bytes, 162 lines md5sums
Package: eigensoft
Source: eigensoft (7.2.1+dfsg-1)
Version: 7.2.1+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2323
Depends: libblas3 | libblas.so.3, libc6 (>= 2.23), libgsl23 (>= 2.5), liblapack3 | liblapack.so.3, liblapacke, perl:any
Recommends: gnuplot
Section: science
Priority: optional
Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/
Description: reduction of population bias for genetic analyses
The EIGENSOFT package combines functionality from the group's population
genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification
method (Price et al. 2006). The EIGENSTRAT method uses principal components
analysis to explicitly model ancestry differences between cases and
controls along continuous axes of variation; the resulting correction is
specific to a candidate marker's variation in frequency across ancestral
populations, minimizing spurious associations while maximizing power to
detect true associations. The EIGENSOFT package has a built-in plotting
script and supports multiple file formats and quantitative phenotypes.
drwxr-xr-x root/root 0 2018-07-16 14:10 ./
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/bin/
-rwxr-xr-x root/root 202528 2018-07-16 14:10 ./usr/bin/baseprog
-rwxr-xr-x root/root 210856 2018-07-16 14:10 ./usr/bin/convertf
-rwxr-xr-x root/root 9684 2018-07-16 14:10 ./usr/bin/eigenstrat
-rwxr-xr-x root/root 9684 2018-07-16 14:10 ./usr/bin/eigenstratQTL
-rwxr-xr-x root/root 1462 2018-07-16 14:10 ./usr/bin/evec2pca
-rwxr-xr-x root/root 2311 2018-07-16 14:10 ./usr/bin/evec2pca-ped
lrwxrwxrwx root/root 0 2018-07-16 14:10 ./usr/bin/gc-eigensoft -> ../lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root 198472 2018-07-16 14:10 ./usr/bin/mergeit
-rwxr-xr-x root/root 83416 2018-07-16 14:10 ./usr/bin/pca
-rwxr-xr-x root/root 79320 2018-07-16 14:10 ./usr/bin/pcatoy
-rwxr-xr-x root/root 2112 2018-07-16 14:10 ./usr/bin/smarteigenstrat
-rwxr-xr-x root/root 4738 2018-07-16 14:10 ./usr/bin/smartpca
-rwxr-xr-x root/root 268248 2018-07-16 14:10 ./usr/bin/smartrel
-rwxr-xr-x root/root 305164 2018-07-16 14:10 ./usr/bin/smshrink
-rwxr-xr-x root/root 144932 2018-07-16 14:10 ./usr/bin/twstats
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 2311 2018-07-16 14:10 ./usr/lib/debian-med/bin/evec2pca-ped.perl
-rwxr-xr-x root/root 1462 2018-07-16 14:10 ./usr/lib/debian-med/bin/evec2pca.perl
-rwxr-xr-x root/root 1887 2017-06-30 20:40 ./usr/lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root 2112 2018-07-16 14:10 ./usr/lib/debian-med/bin/smarteigenstrat.perl
-rwxr-xr-x root/root 4738 2018-07-16 14:10 ./usr/lib/debian-med/bin/smartpca.perl
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/lib/eigensoft/
-rwxr-xr-x root/root 202536 2018-07-16 14:10 ./usr/lib/eigensoft/smarteigenstrat
-rwxr-xr-x root/root 305156 2018-07-16 14:10 ./usr/lib/eigensoft/smartpca
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/share/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/share/doc/eigensoft/
-rw-r--r-- root/root 726 2018-07-16 14:10 ./usr/share/doc/eigensoft/README.Debian
-rw-r--r-- root/root 2660 2017-06-30 20:40 ./usr/share/doc/eigensoft/README.gz
-rw-r--r-- root/root 224 2018-07-16 14:10 ./usr/share/doc/eigensoft/changelog.Debian.armhf.gz
-rw-r--r-- root/root 1086 2018-07-16 14:10 ./usr/share/doc/eigensoft/changelog.Debian.gz
-rw-r--r-- root/root 2553 2018-07-16 14:10 ./usr/share/doc/eigensoft/copyright
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/share/doc/eigensoft/examples/
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/share/doc/eigensoft/examples/CONVERTF/
-rw-r--r-- root/root 5543 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/README.gz
-rw-r--r-- root/root 1610 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ancestrymapgeno
-rw-r--r-- root/root 17 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.bed
-rw-r--r-- root/root 42 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.eigenstratgeno
-rw-r--r-- root/root 163 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind
-rw-r--r-- root/root 170 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind.packedancestrymap
-rw-r--r-- root/root 294 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.map
-rw-r--r-- root/root 384 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymap
-rw-r--r-- root/root 384 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymapgeno
-rw-r--r-- root/root 315 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ped
-rw-r--r-- root/root 140 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedind
-rw-r--r-- root/root 322 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedsnp
-rwxr-xr-x root/root 356 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.perl
-rw-r--r-- root/root 6 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pheno
-rw-r--r-- root/root 427 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.snp
-rw-r--r-- root/root 427 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/example.snp.packedancestrymap
-rwxr-xr-x root/root 425 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/ind2pheno.perl
-rw-r--r-- root/root 225 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.ANCESTRYMAP.EIGENSTRAT
-rw-r--r-- root/root 212 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.EIGENSTRAT.PED
-rw-r--r-- root/root 233 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PACKEDANCESTRYMAP.ANCESTRYMAP
-rw-r--r-- root/root 315 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PACKEDPED.PACKEDANCESTRYMAP
-rw-r--r-- root/root 302 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PED.EIGENSTRAT
-rw-r--r-- root/root 295 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PED.PACKEDPED
drwxr-xr-x root/root 0 2018-07-16 14:10 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/
-rw-r--r-- root/root 4440 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/README.gz
-rw-r--r-- root/root 115 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq
-rw-r--r-- root/root 141 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.GC
-rw-r--r-- root/root 182 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.par
-rw-r--r-- root/root 175 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.ind
-rwxr-xr-x root/root 971 2017-06-30 20:40 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.perl
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| Summary |
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Build Architecture: armhf
Build-Space: 15560
Build-Time: 53
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 163
Job: eigensoft_7.2.1+dfsg-1
Machine Architecture: armhf
Package: eigensoft
Package-Time: 237
Source-Version: 7.2.1+dfsg-1
Space: 15560
Status: successful
Version: 7.2.1+dfsg-1+b1
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Finished at 2018-10-11T15:03:01Z
Build needed 00:03:57, 15560k disk space