eigensoft →
6.1.3+dfsg-1 →
armhf → 2016-08-12 07:06:12
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testbuildd.raspbian.org
+==============================================================================+
| eigensoft 6.1.3+dfsg-1 (armhf) 12 Aug 2016 06:57 |
+==============================================================================+
Package: eigensoft
Version: 6.1.3+dfsg-1
Source Version: 6.1.3+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/eigensoft-12Vwnw/eigensoft-6.1.3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/eigensoft-12Vwnw' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-d1202a62-fe3f-422d-96c1-da41a1ec50d8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9218 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.2 MB]
Fetched 20.4 MB in 24s (836 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'eigensoft' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/eigensoft.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/eigensoft.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 162 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main eigensoft 6.1.3+dfsg-1 (dsc) [2107 B]
Get:2 http://172.17.0.1/private stretch-staging/main eigensoft 6.1.3+dfsg-1 (tar) [154 kB]
Get:3 http://172.17.0.1/private stretch-staging/main eigensoft 6.1.3+dfsg-1 (diff) [5704 B]
Fetched 162 kB in 0s (964 kB/s)
Download complete and in download only mode
Check architectures
-------------------
Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-mX6qwM/apt_archive/sbuild-build-depends-core-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ Packages [526 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-mX6qwM/apt_archive/./Release.gpg: Signature by key 085A60275B95EE7E758335885FBC947B34E39F26 uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 64 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-mX6qwM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12764 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
Filtered Build-Depends: debhelper (>= 9), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev
dpkg-deb: building package 'sbuild-build-depends-eigensoft-dummy' in '/<<BUILDDIR>>/resolver-bILKbj/apt_archive/sbuild-build-depends-eigensoft-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ Sources [241 B]
Get:5 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ Packages [559 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-bILKbj/apt_archive/./Release.gpg: Signature by key 085A60275B95EE7E758335885FBC947B34E39F26 uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install eigensoft build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gcc-6-base gettext gettext-base
gfortran gfortran-5 groff-base intltool-debian libarchive-zip-perl
libatomic1 libblas-common libblas-dev libblas3 libbsd0 libcc1-0 libcroco3
libffi6 libfile-stripnondeterminism-perl libgcc1 libgfortran-5-dev
libgfortran3 libglib2.0-0 libgomp1 libgsl-dev libgsl2 libicu55 liblapack-dev
liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libstdc++6 libtimedate-perl libtmglib-dev libtmglib3 libtool
libubsan0 libunistring0 libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc
gcj-jdk less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran
gfortran-5 groff-base intltool-debian libarchive-zip-perl libblas-common
libblas-dev libblas3 libbsd0 libcroco3 libffi6
libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libglib2.0-0
libgsl-dev libgsl2 libicu55 liblapack-dev liblapack3 liblapacke
liblapacke-dev libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libtimedate-perl libtmglib-dev libtmglib3 libtool libunistring0 libxml2 m4
man-db po-debconf sbuild-build-depends-eigensoft-dummy
The following packages will be upgraded:
gcc-6-base libatomic1 libcc1-0 libgcc1 libgomp1 libstdc++6 libubsan0
7 upgraded, 47 newly installed, 0 to remove and 57 not upgraded.
Need to get 41.2 MB/48.6 MB of archives.
After this operation, 192 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-bILKbj/apt_archive ./ sbuild-build-depends-eigensoft-dummy 0.invalid.0 [798 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf gcc-6-base armhf 6.1.1-10+rpi1 [172 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libgcc1 armhf 1:6.1.1-10+rpi1 [38.2 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libubsan0 armhf 6.1.1-10+rpi1 [91.1 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libcc1-0 armhf 6.1.1-10+rpi1 [24.9 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libatomic1 armhf 6.1.1-10+rpi1 [6786 B]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libgomp1 armhf 6.1.1-10+rpi1 [63.5 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libstdc++6 armhf 6.1.1-10+rpi1 [332 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.28-4 [210 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-4 [104 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-4 [62.7 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-1 [804 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.48.1-2 [2546 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.58-1 [95.5 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.022-1 [13.1 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.022-1 [7902 B]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160709 [799 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-10+rpi1 [166 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.4.0-4 [182 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.4.0-4 [23.7 MB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-3 [1370 B]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.1+dfsg-2 [697 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libgsl-dev armhf 2.1+dfsg-2 [812 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.1-2 [1392 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.1-2 [1379 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libtmglib3 armhf 3.6.1-2 [90.3 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf liblapacke armhf 3.6.1-2 [261 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libtmglib-dev armhf 3.6.1-2 [91.7 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf liblapacke-dev armhf 3.6.1-2 [235 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 41.2 MB in 15s (2715 kB/s)
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12764 files and directories currently installed.)
Preparing to unpack .../gcc-6-base_6.1.1-10+rpi1_armhf.deb ...
Unpacking gcc-6-base:armhf (6.1.1-10+rpi1) over (6.1.1-1+rpi1) ...
Setting up gcc-6-base:armhf (6.1.1-10+rpi1) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12764 files and directories currently installed.)
Preparing to unpack .../libgcc1_1%3a6.1.1-10+rpi1_armhf.deb ...
Unpacking libgcc1:armhf (1:6.1.1-10+rpi1) over (1:6.1.1-1+rpi1) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
Setting up libgcc1:armhf (1:6.1.1-10+rpi1) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12764 files and directories currently installed.)
Preparing to unpack .../libubsan0_6.1.1-10+rpi1_armhf.deb ...
Unpacking libubsan0:armhf (6.1.1-10+rpi1) over (6.1.1-1+rpi1) ...
Preparing to unpack .../libcc1-0_6.1.1-10+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (6.1.1-10+rpi1) over (6.1.1-1+rpi1) ...
Preparing to unpack .../libatomic1_6.1.1-10+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (6.1.1-10+rpi1) over (6.1.1-1+rpi1) ...
Preparing to unpack .../libgomp1_6.1.1-10+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (6.1.1-10+rpi1) over (6.1.1-1+rpi1) ...
Preparing to unpack .../libstdc++6_6.1.1-10+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (6.1.1-10+rpi1) over (6.1.1-1+rpi1) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
Setting up libstdc++6:armhf (6.1.1-10+rpi1) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12764 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.10_armhf.deb ...
Unpacking bsdmainutils (9.0.10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../libmagic-mgc_1%3a5.28-4_armhf.deb ...
Unpacking libmagic-mgc (1:5.28-4) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.28-4_armhf.deb ...
Unpacking libmagic1:armhf (1:5.28-4) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.28-4_armhf.deb ...
Unpacking file (1:5.28-4) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libicu55:armhf.
Preparing to unpack .../libicu55_55.1-7_armhf.deb ...
Unpacking libicu55:armhf (55.1-7) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.4+dfsg1-1_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-1) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../archives/m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../autotools-dev_20160430.1_all.deb ...
Unpacking autotools-dev (20160430.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../automake_1%3a1.15-4_all.deb ...
Unpacking automake (1:1.15-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.2.1-4_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-4) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.48.1-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.48.1-2) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.11-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-1) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.19_all.deb ...
Unpacking po-debconf (1.0.19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../libarchive-zip-perl_1.58-1_all.deb ...
Unpacking libarchive-zip-perl (1.58-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../libfile-stripnondeterminism-perl_0.022-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.022-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../dh-strip-nondeterminism_0.022-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.022-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../libtool_2.4.6-0.1_all.deb ...
Unpacking libtool (2.4.6-0.1) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20160709_all.deb ...
Unpacking debhelper (9.20160709) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../libgfortran3_6.1.1-10+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (6.1.1-10+rpi1) ...
Selecting previously unselected package libgfortran-5-dev:armhf.
Preparing to unpack .../libgfortran-5-dev_5.4.0-4_armhf.deb ...
Unpacking libgfortran-5-dev:armhf (5.4.0-4) ...
Selecting previously unselected package gfortran-5.
Preparing to unpack .../gfortran-5_5.4.0-4_armhf.deb ...
Unpacking gfortran-5 (5.4.0-4) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../gfortran_4%3a5.3.1-3_armhf.deb ...
Unpacking gfortran (4:5.3.1-3) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../libblas-common_3.6.1-2_armhf.deb ...
Unpacking libblas-common (3.6.1-2) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../libblas3_3.6.1-2_armhf.deb ...
Unpacking libblas3 (3.6.1-2) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../libblas-dev_3.6.1-2_armhf.deb ...
Unpacking libblas-dev (3.6.1-2) ...
Selecting previously unselected package libgsl2:armhf.
Preparing to unpack .../libgsl2_2.1+dfsg-2_armhf.deb ...
Unpacking libgsl2:armhf (2.1+dfsg-2) ...
Selecting previously unselected package libgsl-dev.
Preparing to unpack .../libgsl-dev_2.1+dfsg-2_armhf.deb ...
Unpacking libgsl-dev (2.1+dfsg-2) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../liblapack3_3.6.1-2_armhf.deb ...
Unpacking liblapack3 (3.6.1-2) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../liblapack-dev_3.6.1-2_armhf.deb ...
Unpacking liblapack-dev (3.6.1-2) ...
Selecting previously unselected package libtmglib3.
Preparing to unpack .../libtmglib3_3.6.1-2_armhf.deb ...
Unpacking libtmglib3 (3.6.1-2) ...
Selecting previously unselected package liblapacke.
Preparing to unpack .../liblapacke_3.6.1-2_armhf.deb ...
Unpacking liblapacke (3.6.1-2) ...
Selecting previously unselected package libtmglib-dev.
Preparing to unpack .../libtmglib-dev_3.6.1-2_armhf.deb ...
Unpacking libtmglib-dev (3.6.1-2) ...
Selecting previously unselected package liblapacke-dev.
Preparing to unpack .../liblapacke-dev_3.6.1-2_armhf.deb ...
Unpacking liblapacke-dev (3.6.1-2) ...
Selecting previously unselected package sbuild-build-depends-eigensoft-dummy.
Preparing to unpack .../sbuild-build-depends-eigensoft-dummy.deb ...
Unpacking sbuild-build-depends-eigensoft-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
Setting up libgomp1:armhf (6.1.1-10+rpi1) ...
Setting up libatomic1:armhf (6.1.1-10+rpi1) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libcc1-0:armhf (6.1.1-10+rpi1) ...
Setting up libarchive-zip-perl (1.58-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up libblas-common (3.6.1-2) ...
Setting up libubsan0:armhf (6.1.1-10+rpi1) ...
Setting up libgfortran3:armhf (6.1.1-10+rpi1) ...
Setting up groff-base (1.22.3-8) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up libgsl2:armhf (2.1+dfsg-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-1) ...
Setting up libmagic-mgc (1:5.28-4) ...
Setting up libgfortran-5-dev:armhf (5.4.0-4) ...
Setting up libmagic1:armhf (1:5.28-4) ...
Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up libfile-stripnondeterminism-perl (0.022-1) ...
Setting up libgsl-dev (2.1+dfsg-2) ...
Setting up liblapack3 (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libglib2.0-0:armhf (2.48.1-2) ...
No schema files found: doing nothing.
Setting up gfortran-5 (5.4.0-4) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.28-4) ...
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-0.1) ...
Setting up gfortran (4:5.3.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libtmglib3 (3.6.1-2) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up liblapacke (3.6.1-2) ...
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up po-debconf (1.0.19) ...
Setting up libtmglib-dev (3.6.1-2) ...
Setting up liblapacke-dev (3.6.1-2) ...
Setting up dh-autoreconf (12) ...
Setting up dh-strip-nondeterminism (0.022-1) ...
Setting up debhelper (9.20160709) ...
Setting up sbuild-build-depends-eigensoft-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.23-1+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.23-1+rpi1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-10+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3~pre2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160709 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.022-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-4 findutils_4.6.0+git+20160517-5 fuse2fs_1.43.1-1 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-10+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:5.3.1-3 gfortran-5_5.4.0-4 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.7 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-4 libapt-pkg5.0_1.3~pre2 libarchive-zip-perl_1.58-1 libasan2_5.4.0-4 libatomic1_6.1.1-10+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-1+rpi1 libc-dev-bin_2.23-1+rpi1 libc6_2.23-1+rpi1 libc6-dev_2.23-1+rpi1 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-10+rpi1 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.127-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libfakeroot_1.21-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.022-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-10+rpi1 libgcrypt20_1.7.1-2 libgdbm3_1.8.3-14 libgfortran-5-dev_5.4.0-4 libgfortran3_6.1.1-10+rpi1 libglib2.0-0_2.48.1-2 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.1.1-10+rpi1 libgpg-error0_1.23-1 libgsl-dev_2.1+dfsg-2 libgsl2_2.1+dfsg-2 libicu55_55.1-7 libidn11_1.32-3.1 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 liblapack-dev_3.6.1-2 liblapack3_3.6.1-2 liblapacke_3.6.1-2 liblapacke-dev_3.6.1-2 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-2 libncursesw5_6.0+20160319-2 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-2 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-5 libss2_1.43.1-1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-10+rpi1 libsystemd0_230-5 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-2 libtmglib-dev_3.6.1-2 libtmglib3_3.6.1-2 libtool_2.4.6-0.1 libubsan0_6.1.1-10+rpi1 libudev1_230-5 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.4+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mount_2.28-5 multiarch-support_2.23-1+rpi1 nano_2.6.1-1 ncurses-base_6.0+20160319-2 ncurses-bin_6.0+20160319-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-2 perl-base_5.22.2-2 perl-modules-5.22_5.22.2-2 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-eigensoft-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7 sysvinit-utils_2.88dsf-59.7 tar_1.29-1+rpi1 tzdata_2016f-1 udev_230-5 util-linux_2.28-5 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Aug 5 22:04:58 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./eigensoft_6.1.3+dfsg-1.dsc
dpkg-source: info: extracting eigensoft in eigensoft-6.1.3+dfsg
dpkg-source: info: unpacking eigensoft_6.1.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking eigensoft_6.1.3+dfsg-1.debian.tar.xz
dpkg-source: info: applying blas.patch
dpkg-source: info: applying libm.patch
dpkg-source: info: applying lapacke.patch
dpkg-source: info: applying fixing_headers.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-d1202a62-fe3f-422d-96c1-da41a1ec50d8
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package eigensoft
dpkg-buildpackage: info: source version 6.1.3+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build eigensoft-6.1.3+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg'
dh_clean
/usr/bin/make -C src clobber
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg/src'
rm -f *.o */*.o */*.a
rm -f baseprog convertf mergeit pca eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca
cd ../bin/ ; rm -f baseprog convertf mergeit pca pcatoy smartrel smarteigenstrat twstats eigenstrat eigenstratQTL smartpca ; cd ../src
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg'
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg'
/usr/bin/make DEBUG_OPTIONS=-g -C src all
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg/src'
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o baseprog.o baseprog.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcio.o mcio.c
mcio.c: In function 'getgenos':
mcio.c:1391:7: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
system (cmd);
^
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o egsubs.o egsubs.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o admutils.o admutils.c
admutils.c: In function 'setid2pops':
admutils.c:1288:19: warning: format '%s' expects a matching 'char *' argument [-Wformat=]
printf ("(setid2pops): %s not found\n");
^
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o h2d.o h2d.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/exclude.o eigensrc/exclude.c
/usr/bin/make -C nicksrc
make[3]: Entering directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg/src/nicksrc'
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gauss.o gauss.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gds.o gds.c
gds.c: In function 'ewens':
gds.c:412:5: warning: 'return' with no value, in function returning non-void
return;
^
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getpars.o getpars.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linsubs.o linsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sortit.o sortit.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o statsubs.o statsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsubs.o strsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vsubs.o vsubs.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xsearch.o xsearch.c
cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twtable.o twtable.c
ar -r libnick.a gauss.o gds.o getpars.o linsubs.o sortit.o statsubs.o strsubs.o vsubs.o xsearch.o twtable.o
ar: creating libnick.a
make[3]: Leaving directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg/src/nicksrc'
cc -Wl,-z,relro -Wl,-z,now baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o baseprog
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convertf.o convertf.c
cc -Wl,-z,relro -Wl,-z,now convertf.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o convertf
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mergeit.o mergeit.c
cc -Wl,-z,relro -Wl,-z,now mergeit.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o mergeit
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pca.o pca.c
pca.c: In function 'main':
pca.c:110:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^
pca.c:186:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^
pca.c:216:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar); /* should be \n character */
^
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigsubs.o eigensrc/eigsubs.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigx.o eigx.c
cc -Wl,-z,relro -Wl,-z,now pca.o eigensrc/eigsubs.o eigx.o nicksrc/libnick.a -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o pca
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/pcatoy.o eigensrc/pcatoy.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigx.o eigensrc/eigx.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/pcatoy.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o eigensrc/pcatoy
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartrel.o eigensrc/smartrel.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twsubs.o twsubs.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qpsubs.o qpsubs.c
qpsubs.c: In function 'doinbreed':
qpsubs.c:2507:3: warning: 'return' with no value, in function returning non-void
return;
^
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regsubs.o regsubs.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartsubs.o eigensrc/smartsubs.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/smartrel.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o eigensrc/eigsubs.o eigensrc/eigx.o eigensrc/smartsubs.o nicksrc/libnick.a -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o eigensrc/smartrel
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smarteigenstrat.o eigensrc/smarteigenstrat.c
eigensrc/smarteigenstrat.c: In function 'readpcafile':
eigensrc/smarteigenstrat.c:355:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%d", &K);
^
eigensrc/smarteigenstrat.c:363:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
^
eigensrc/smarteigenstrat.c:367:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
^
eigensrc/smarteigenstrat.c:386:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble);
^
cc -Wl,-z,relro -Wl,-z,now eigensrc/smarteigenstrat.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o eigensrc/smarteigenstrat
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/twstats.o eigensrc/twstats.c
cc -Wl,-z,relro -Wl,-z,now eigensrc/twstats.o nicksrc/libnick.a -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o eigensrc/twstats
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigenstrat.o eigensrc/eigenstrat.c
eigensrc/eigenstrat.c: In function 'main':
eigensrc/eigenstrat.c:94:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^
eigensrc/eigenstrat.c:136:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%d", &K);
^
eigensrc/eigenstrat.c:144:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
^
eigensrc/eigenstrat.c:148:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
^
eigensrc/eigenstrat.c:167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble);
^
eigensrc/eigenstrat.c:184:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppheno, "%c", &Xchar);
^
eigensrc/eigenstrat.c:212:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppheno, "%c", &Xchar); /* should be end of file */
^
eigensrc/eigenstrat.c:278:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^
eigensrc/eigenstrat.c:306:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar); /* should be \n character */
^
cc -Wl,-z,relro -Wl,-z,now eigensrc/eigenstrat.o -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o eigensrc/eigenstrat
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigenstratQTL.o eigensrc/eigenstratQTL.c
eigensrc/eigenstratQTL.c: In function 'main':
eigensrc/eigenstratQTL.c:94:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^
eigensrc/eigenstratQTL.c:136:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%d", &K);
^
eigensrc/eigenstratQTL.c:144:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */
^
eigensrc/eigenstratQTL.c:148:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &V[NSAMPLES * n + k]);
^
eigensrc/eigenstratQTL.c:167:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppca, "%lf", &tempdouble);
^
eigensrc/eigenstratQTL.c:192:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppheno, "%lf", &iscase[n]); /* QTL phenotype */
^
eigensrc/eigenstratQTL.c:194:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fppheno, "%lf", &tempdouble); /* to check # entries */
^
eigensrc/eigenstratQTL.c:257:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar);
^
eigensrc/eigenstratQTL.c:285:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (fp, "%c", &Xchar); /* should be \n character */
^
cc -Wl,-z,relro -Wl,-z,now eigensrc/eigenstratQTL.o -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o eigensrc/eigenstratQTL
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartpca.o eigensrc/smartpca.c
eigensrc/smartpca.c: In function 'main':
eigensrc/smartpca.c:664:7: warning: implicit declaration of function 'setid2pops' [-Wimplicit-function-declaration]
setid2pops (id2pops, indivmarkers, numindivs);
^
eigensrc/smartpca.c:825:7: warning: implicit declaration of function 'kjg_fpca' [-Wimplicit-function-declaration]
kjg_fpca (numeigs, fastdim, fastiter, evals, evecs);
^
eigensrc/smartpca.c:624:7: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result]
system (buff);
^
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gval.o gval.c
gval.c: In function 'setgval':
gval.c:69:7: warning: implicit declaration of function 'getcolxz' [-Wimplicit-function-declaration]
getcolxz (cc, cupt, xindex, xtypes, nrows, i, xmean, xfancy, &n0, &n1);
^
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_fpca.o ksrc/kjg_fpca.c
cc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_gsl.o ksrc/kjg_gsl.c
ksrc/kjg_gsl.c: In function 'kjg_gsl_matrix_fscanf':
ksrc/kjg_gsl.c:38:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
fscanf (stream, "%lg", &x);
^
cc -Wl,-z,relro -Wl,-z,now eigensrc/smartpca.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lgfortran -lrt -lm -llapacke -llapack -pthread -o eigensrc/smartpca
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg/src'
cd src && make install
make[2]: Entering directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg/src'
mv baseprog convertf mergeit pca eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca ../bin
make[2]: Leaving directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg'
dh_install
find debian/eigensoft/usr/share/ -type f -empty -delete
# file consists only from single line with wrong interpreter
find debian/eigensoft/usr/share/ -type f -name HGDP.X.perl -delete
# Fix wrappers and drop *.perl extension in /usr/bin while keeping
# the original name in /usr/lib/debian-med/bin
mkdir -p debian/eigensoft/usr/lib/debian-med/bin
for pl in evec2pca-ped evec2pca smarteigenstrat smartpca ; do \
rm debian/eigensoft/usr/bin/${pl} ; \
sed -i \
-e "s?\(command[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
-e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \
-e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(evec2pca.*\)\.perl?\1?" \
-e "s?\(${pl}\)\.perl?\1?" \
debian/eigensoft/usr/bin/${pl}.perl ; \
cp -a debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/bin/${pl} ; \
mv debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/lib/debian-med/bin ; \
done
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca-ped': No such file or directory
rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca': No such file or directory
rm debian/eigensoft/usr/bin/gc.perl
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg'
dh_fixperms
find debian/*/usr/share/eigensoft -type f -name "*.perl" -exec chmod +x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/eigensoft-6.1.3+dfsg'
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/smartrel were not linked against libgfortran.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/smartrel were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/smartrel were not linked against librt.so.1 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/bin/smartrel were not linked against libblas.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'eigensoft-dbgsym' in '../eigensoft-dbgsym_6.1.3+dfsg-1_armhf.deb'.
dpkg-deb: building package 'eigensoft' in '../eigensoft_6.1.3+dfsg-1_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../eigensoft_6.1.3+dfsg-1_armhf.changes
dpkg-genchanges: warning: package eigensoft-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build eigensoft-6.1.3+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160812-0705
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
eigensoft_6.1.3+dfsg-1_armhf.changes:
-------------------------------------
Format: 1.8
Date: Fri, 05 Aug 2016 23:40:38 +0200
Source: eigensoft
Binary: eigensoft
Architecture: armhf
Version: 6.1.3+dfsg-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
eigensoft - reduction of population bias for genetic analyses
Changes:
eigensoft (6.1.3+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Upstream has changed extensions from .pl to .perl
Checksums-Sha1:
e3e233f097ad14329e0add23940a1cecf4d7a17d 817248 eigensoft-dbgsym_6.1.3+dfsg-1_armhf.deb
1be4f02349203fcb2d353cb1e742172180577016 235766 eigensoft_6.1.3+dfsg-1_armhf.deb
Checksums-Sha256:
086f84ed59ab05d4cefa53a592a38ebf548fe3e6a4c7f99440e5ac530d559a11 817248 eigensoft-dbgsym_6.1.3+dfsg-1_armhf.deb
079ab7ceb5dc9f769e3ee8e038b4d2fb40d9f04423eda699cc8ddedfab673328 235766 eigensoft_6.1.3+dfsg-1_armhf.deb
Files:
383be5f33c0e0e46cae45eae6ae5fcbe 817248 debug extra eigensoft-dbgsym_6.1.3+dfsg-1_armhf.deb
49c0c020be412def804127d9f84d3869 235766 science optional eigensoft_6.1.3+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
eigensoft-dbgsym_6.1.3+dfsg-1_armhf.deb
---------------------------------------
new debian package, version 2.0.
size 817248 bytes: control archive=1067 bytes.
864 bytes, 13 lines control
1166 bytes, 11 lines md5sums
Package: eigensoft-dbgsym
Source: eigensoft
Version: 6.1.3+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1089
Depends: eigensoft (= 6.1.3+dfsg-1)
Section: debug
Priority: extra
Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/
Description: Debug symbols for eigensoft
Auto-Built-Package: debug-symbols
Build-Ids: 06fab7fced8ff1ff886c9b75762dba7d9d20dc56 228ab14e47032a0dfb861b6f79ade430e553d635 23b9f8a55157c30657976f5a3c48450666d15c3e 3fb4ff356beabee904ce11d2b2f58236574b2c6b 849caac6a92e22c69ddad39637d4b2dd53a5ba97 87eb1e0361710a831dc867f3a0018f5a1b79fbeb 8c18f54a12071d0fe62ce58ac8e833d24d222fe8 bd54b212357bbe5ce8c1c281f9e92029545134fb c6d6b933d2e491b988856c0e1c29ad26b4e4ba5c cf2f3b469e110eb69ecd3b477b1e6c8efad61dcc df19e2655403bab742d6f41312e04819e89424a6
drwxr-xr-x root/root 0 2016-08-12 07:05 ./
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 259804 2016-08-12 07:05 ./usr/lib/debug/.build-id/06/fab7fced8ff1ff886c9b75762dba7d9d20dc56.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/22/
-rw-r--r-- root/root 29016 2016-08-12 07:05 ./usr/lib/debug/.build-id/22/8ab14e47032a0dfb861b6f79ade430e553d635.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/23/
-rw-r--r-- root/root 25032 2016-08-12 07:05 ./usr/lib/debug/.build-id/23/b9f8a55157c30657976f5a3c48450666d15c3e.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/3f/
-rw-r--r-- root/root 12224 2016-08-12 07:05 ./usr/lib/debug/.build-id/3f/b4ff356beabee904ce11d2b2f58236574b2c6b.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/84/
-rw-r--r-- root/root 128684 2016-08-12 07:05 ./usr/lib/debug/.build-id/84/9caac6a92e22c69ddad39637d4b2dd53a5ba97.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/87/
-rw-r--r-- root/root 26448 2016-08-12 07:05 ./usr/lib/debug/.build-id/87/eb1e0361710a831dc867f3a0018f5a1b79fbeb.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/8c/
-rw-r--r-- root/root 12032 2016-08-12 07:05 ./usr/lib/debug/.build-id/8c/18f54a12071d0fe62ce58ac8e833d24d222fe8.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/bd/
-rw-r--r-- root/root 213716 2016-08-12 07:05 ./usr/lib/debug/.build-id/bd/54b212357bbe5ce8c1c281f9e92029545134fb.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/c6/
-rw-r--r-- root/root 123640 2016-08-12 07:05 ./usr/lib/debug/.build-id/c6/d6b933d2e491b988856c0e1c29ad26b4e4ba5c.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/cf/
-rw-r--r-- root/root 137840 2016-08-12 07:05 ./usr/lib/debug/.build-id/cf/2f3b469e110eb69ecd3b477b1e6c8efad61dcc.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debug/.build-id/df/
-rw-r--r-- root/root 122252 2016-08-12 07:05 ./usr/lib/debug/.build-id/df/19e2655403bab742d6f41312e04819e89424a6.debug
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-08-12 07:05 ./usr/share/doc/eigensoft-dbgsym -> eigensoft
eigensoft_6.1.3+dfsg-1_armhf.deb
--------------------------------
new debian package, version 2.0.
size 235766 bytes: control archive=3681 bytes.
1151 bytes, 20 lines control
13500 bytes, 164 lines md5sums
Package: eigensoft
Version: 6.1.3+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1781
Depends: libblas3 | libblas.so.3, libc6 (>= 2.23), libgfortran3 (>= 4.3), libgsl2, liblapack3 | liblapack.so.3, liblapacke, perl:any
Recommends: gnuplot
Section: science
Priority: optional
Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/
Description: reduction of population bias for genetic analyses
The EIGENSOFT package combines functionality from the group's population
genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification
method (Price et al. 2006). The EIGENSTRAT method uses principal components
analysis to explicitly model ancestry differences between cases and
controls along continuous axes of variation; the resulting correction is
specific to a candidate marker's variation in frequency across ancestral
populations, minimizing spurious associations while maximizing power to
detect true associations. The EIGENSOFT package has a built-in plotting
script and supports multiple file formats and quantitative phenotypes.
drwxr-xr-x root/root 0 2016-08-12 07:05 ./
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/bin/
-rwxr-xr-x root/root 177944 2016-08-12 07:05 ./usr/bin/baseprog
-rwxr-xr-x root/root 182168 2016-08-12 07:05 ./usr/bin/convertf
-rwxr-xr-x root/root 9676 2016-08-12 07:05 ./usr/bin/eigenstrat
-rwxr-xr-x root/root 9676 2016-08-12 07:05 ./usr/bin/eigenstratQTL
-rwxr-xr-x root/root 1462 2016-08-12 07:05 ./usr/bin/evec2pca
-rwxr-xr-x root/root 2311 2016-08-12 07:05 ./usr/bin/evec2pca-ped
lrwxrwxrwx root/root 0 2016-08-12 07:05 ./usr/bin/gc-eigensoft -> ../lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root 173880 2016-08-12 07:05 ./usr/bin/mergeit
-rwxr-xr-x root/root 62924 2016-08-12 07:05 ./usr/bin/pca
-rwxr-xr-x root/root 58828 2016-08-12 07:05 ./usr/bin/pcatoy
-rwxr-xr-x root/root 2112 2016-08-12 07:05 ./usr/bin/smarteigenstrat
-rwxr-xr-x root/root 4738 2016-08-12 07:05 ./usr/bin/smartpca
-rwxr-xr-x root/root 239568 2016-08-12 07:05 ./usr/bin/smartrel
-rwxr-xr-x root/root 99828 2016-08-12 07:05 ./usr/bin/twstats
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/debian-med/bin/
-rwxr-xr-x root/root 2311 2016-08-12 07:05 ./usr/lib/debian-med/bin/evec2pca-ped.perl
-rwxr-xr-x root/root 1462 2016-08-12 07:05 ./usr/lib/debian-med/bin/evec2pca.perl
-rwxr-xr-x root/root 1887 2016-07-29 14:26 ./usr/lib/debian-med/bin/gc.perl
-rwxr-xr-x root/root 2112 2016-08-12 07:05 ./usr/lib/debian-med/bin/smarteigenstrat.perl
-rwxr-xr-x root/root 4738 2016-08-12 07:05 ./usr/lib/debian-med/bin/smartpca.perl
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/lib/eigensoft/
-rwxr-xr-x root/root 177944 2016-08-12 07:05 ./usr/lib/eigensoft/smarteigenstrat
-rwxr-xr-x root/root 272388 2016-08-12 07:05 ./usr/lib/eigensoft/smartpca
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/eigensoft/
-rw-r--r-- root/root 4060 2016-07-29 14:26 ./usr/share/doc/eigensoft/README
-rw-r--r-- root/root 726 2016-08-05 21:40 ./usr/share/doc/eigensoft/README.Debian
-rw-r--r-- root/root 907 2016-08-05 21:40 ./usr/share/doc/eigensoft/changelog.Debian.gz
-rw-r--r-- root/root 2553 2016-08-05 21:40 ./usr/share/doc/eigensoft/copyright
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/eigensoft/examples/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/eigensoft/examples/CONVERTF/
-rw-r--r-- root/root 5543 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/README.gz
-rw-r--r-- root/root 1610 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ancestrymapgeno
-rw-r--r-- root/root 17 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.bed
-rw-r--r-- root/root 42 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.eigenstratgeno
-rw-r--r-- root/root 163 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind
-rw-r--r-- root/root 170 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ind.packedancestrymap
-rw-r--r-- root/root 294 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.map
-rw-r--r-- root/root 384 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymap
-rw-r--r-- root/root 384 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.packedancestrymapgeno
-rw-r--r-- root/root 315 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.ped
-rw-r--r-- root/root 140 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedind
-rw-r--r-- root/root 322 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pedsnp
-rw-r--r-- root/root 356 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.perl
-rw-r--r-- root/root 6 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.pheno
-rw-r--r-- root/root 427 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.snp
-rw-r--r-- root/root 427 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/example.snp.packedancestrymap
-rw-r--r-- root/root 425 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/ind2pheno.perl
-rw-r--r-- root/root 225 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/par.ANCESTRYMAP.EIGENSTRAT
-rw-r--r-- root/root 212 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/par.EIGENSTRAT.PED
-rw-r--r-- root/root 233 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PACKEDANCESTRYMAP.ANCESTRYMAP
-rw-r--r-- root/root 315 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PACKEDPED.PACKEDANCESTRYMAP
-rw-r--r-- root/root 302 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PED.EIGENSTRAT
-rw-r--r-- root/root 295 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/CONVERTF/par.PED.PACKEDPED
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/
-rw-r--r-- root/root 4439 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/README.gz
-rw-r--r-- root/root 115 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq
-rw-r--r-- root/root 141 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.GC
-rw-r--r-- root/root 182 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.chisq.par
-rw-r--r-- root/root 175 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.ind
-rw-r--r-- root/root 971 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.QTL.perl
-rw-r--r-- root/root 115 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq
-rw-r--r-- root/root 141 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq.GC
-rw-r--r-- root/root 173 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.chisq.par
-rw-r--r-- root/root 65 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.eval
-rw-r--r-- root/root 42 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.geno
-rw-r--r-- root/root 170 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.ind
-rw-r--r-- root/root 172 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.log
-rw-r--r-- root/root 761 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.oldstyle.perl
-rw-r--r-- root/root 101 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca
-rw-r--r-- root/root 347 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca.evec
-rw-r--r-- root/root 228 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pca.par
-rw-r--r-- root/root 184 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pcaselection.chisq
-rw-r--r-- root/root 156 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pcaselection.par
-rw-r--r-- root/root 903 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.perl
-rw-r--r-- root/root 6 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.pheno
-rw-r--r-- root/root 3498 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.plot.pdf
-rw-r--r-- root/root 3920 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.plot.ps.gz
-rw-r--r-- root/root 237 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.plot.xtxt
-rw-r--r-- root/root 427 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/EIGENSTRAT/example.snp
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/doc/eigensoft/examples/POPGEN/
-rw-r--r-- root/root 11 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/HGDP.X.perl
-rw-r--r-- root/root 6774 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/README.gz
-rw-r--r-- root/root 65 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.eval
-rw-r--r-- root/root 347 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.evec
-rw-r--r-- root/root 42 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.geno
-rw-r--r-- root/root 170 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.ind
-rw-r--r-- root/root 1948 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.log
-rw-r--r-- root/root 101 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.pca
-rw-r--r-- root/root 505 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.perl
-rw-r--r-- root/root 3486 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.plot.pdf
-rw-r--r-- root/root 3911 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.plot.ps.gz
-rw-r--r-- root/root 245 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.plot.xtxt
-rw-r--r-- root/root 229 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.plot2.xtxt
-rw-r--r-- root/root 427 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/example.snp
-rw-r--r-- root/root 232 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/grmjunk
-rw-r--r-- root/root 55 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/grmjunk.id
-rw-r--r-- root/root 268 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/par.example
-rw-r--r-- root/root 3087 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/smartpca.info
-rw-r--r-- root/root 1490 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/twexample.eval
-rw-r--r-- root/root 3159 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/twexample.out.gz
-rw-r--r-- root/root 184 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/twexample.perl
-rw-r--r-- root/root 2058 2016-07-29 14:26 ./usr/share/doc/eigensoft/examples/POPGEN/twtable.gz
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/eigensoft/
drwxr-xr-x root/root 0 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/
-rw-r--r-- root/root 17865 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/README
-rw-r--r-- root/root 1610 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.ancestrymapgeno
-rw-r--r-- root/root 17 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.bed
-rw-r--r-- root/root 42 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.eigenstratgeno
-rw-r--r-- root/root 163 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.ind
-rw-r--r-- root/root 170 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.ind.packedancestrymap
-rw-r--r-- root/root 294 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.map
-rw-r--r-- root/root 384 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.packedancestrymap
-rw-r--r-- root/root 384 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.packedancestrymapgeno
-rw-r--r-- root/root 315 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.ped
-rw-r--r-- root/root 140 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.pedind
-rw-r--r-- root/root 322 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.pedsnp
-rwxr-xr-x root/root 356 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.perl
-rw-r--r-- root/root 6 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.pheno
-rw-r--r-- root/root 427 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.snp
-rw-r--r-- root/root 427 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/example.snp.packedancestrymap
-rwxr-xr-x root/root 425 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/ind2pheno.perl
-rw-r--r-- root/root 225 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/par.ANCESTRYMAP.EIGENSTRAT
-rw-r--r-- root/root 212 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/par.EIGENSTRAT.PED
-rw-r--r-- root/root 233 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/par.PACKEDANCESTRYMAP.ANCESTRYMAP
-rw-r--r-- root/root 315 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/par.PACKEDPED.PACKEDANCESTRYMAP
-rw-r--r-- root/root 302 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/par.PED.EIGENSTRAT
-rw-r--r-- root/root 295 2016-07-29 14:26 ./usr/share/eigensoft/CONVERTF/par.PED.PACKEDPED
drwxr-xr-x root/root 0 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/
-rw-r--r-- root/root 13387 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/README
-rw-r--r-- root/root 115 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.QTL.chisq
-rw-r--r-- root/root 141 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.QTL.chisq.GC
-rw-r--r-- root/root 182 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.QTL.chisq.par
-rw-r--r-- root/root 175 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.QTL.ind
-rwxr-xr-x root/root 971 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.QTL.perl
-rw-r--r-- root/root 115 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.chisq
-rw-r--r-- root/root 141 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.chisq.GC
-rw-r--r-- root/root 173 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.chisq.par
-rw-r--r-- root/root 65 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.eval
-rw-r--r-- root/root 42 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.geno
-rw-r--r-- root/root 170 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.ind
-rw-r--r-- root/root 172 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.log
-rwxr-xr-x root/root 761 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.oldstyle.perl
-rw-r--r-- root/root 101 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.pca
-rw-r--r-- root/root 347 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.pca.evec
-rw-r--r-- root/root 228 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.pca.par
-rw-r--r-- root/root 184 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.pcaselection.chisq
-rw-r--r-- root/root 156 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.pcaselection.par
-rwxr-xr-x root/root 903 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.perl
-rw-r--r-- root/root 6 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.pheno
-rw-r--r-- root/root 3498 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.plot.pdf
-rw-r--r-- root/root 17493 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.plot.ps
-rw-r--r-- root/root 237 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.plot.xtxt
-rw-r--r-- root/root 427 2016-07-29 14:26 ./usr/share/eigensoft/EIGENSTRAT/example.snp
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/eigensoft/POPGEN/
-rw-r--r-- root/root 19541 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/README
-rw-r--r-- root/root 65 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.eval
-rw-r--r-- root/root 347 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.evec
-rw-r--r-- root/root 42 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.geno
-rw-r--r-- root/root 170 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.ind
-rw-r--r-- root/root 1948 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.log
-rw-r--r-- root/root 101 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.pca
-rwxr-xr-x root/root 505 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.perl
-rw-r--r-- root/root 3486 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.plot.pdf
-rw-r--r-- root/root 17493 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.plot.ps
-rw-r--r-- root/root 245 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.plot.xtxt
-rw-r--r-- root/root 229 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.plot2.xtxt
-rw-r--r-- root/root 427 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/example.snp
-rw-r--r-- root/root 232 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/grmjunk
-rw-r--r-- root/root 55 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/grmjunk.id
-rw-r--r-- root/root 268 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/par.example
-rw-r--r-- root/root 3087 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/smartpca.info
-rw-r--r-- root/root 1490 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/twexample.eval
-rw-r--r-- root/root 9600 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/twexample.out
-rwxr-xr-x root/root 184 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/twexample.perl
-rw-r--r-- root/root 5933 2016-07-29 14:26 ./usr/share/eigensoft/POPGEN/twtable
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/man/
drwxr-xr-x root/root 0 2016-08-12 07:05 ./usr/share/man/man1/
-rw-r--r-- root/root 884 2016-08-12 07:05 ./usr/share/man/man1/smarteigenstrat.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 11468
Build-Time: 150
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 293
Job: eigensoft_6.1.3+dfsg-1
Machine Architecture: armhf
Package: eigensoft
Package-Time: 490
Source-Version: 6.1.3+dfsg-1
Space: 11468
Status: successful
Version: 6.1.3+dfsg-1
--------------------------------------------------------------------------------
Finished at 20160812-0705
Build needed 00:08:10, 11468k disc space