ecopcr →
0.5.0+dfsg-1 →
armhf → 2017-01-22 04:53:05
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| ecopcr 0.5.0+dfsg-1 (armhf) Sun, 22 Jan 2017 04:42:53 +0000 |
+==============================================================================+
Package: ecopcr
Version: 0.5.0+dfsg-1
Source Version: 0.5.0+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-441e06f9-2ef0-4697-966b-bd50733540f7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9730 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.7 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ecopcr' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/ecopcr.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/ecopcr.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 24.9 MB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main ecopcr 0.5.0+dfsg-1 (dsc) [2012 B]
Get:2 http://172.17.0.1/private stretch-staging/main ecopcr 0.5.0+dfsg-1 (tar) [24.9 MB]
Get:3 http://172.17.0.1/private stretch-staging/main ecopcr 0.5.0+dfsg-1 (diff) [15.7 kB]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ecopcr-17kNoe/ecopcr-0.5.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ecopcr-17kNoe' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-5rGBIl/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-5rGBIl/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-5rGBIl/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ Packages [428 B]
Fetched 2104 B in 0s (3097 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 62 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 13928 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-python, python3, zlib1g-dev
Filtered Build-Depends: debhelper (>= 10), dh-python, python3, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-ecopcr-dummy' in '/<<BUILDDIR>>/resolver-5rGBIl/apt_archive/sbuild-build-depends-ecopcr-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-ecopcr-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ Sources [505 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ Packages [582 B]
Fetched 2420 B in 0s (4054 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install ecopcr build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsigsegv2 libssl1.1 libtool libunistring0 libxml2 m4
man-db mime-support po-debconf python3 python3-minimal python3.5
python3.5-minimal zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python3.5-venv
python3.5-doc binfmt-support
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsigsegv2 libssl1.1 libtool libunistring0 libxml2 m4
man-db mime-support po-debconf python3 python3-minimal python3.5
python3.5-minimal sbuild-build-depends-ecopcr-dummy zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 44 newly installed, 0 to remove and 61 not upgraded.
Need to get 25.0 MB/25.0 MB of archives.
After this operation, 90.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-5rGBIl/apt_archive ./ sbuild-build-depends-ecopcr-dummy 0.invalid.0 [796 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf zlib1g armhf 1:1.2.8.dfsg-4 [81.6 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0c-2 [1101 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-minimal armhf 3.5.3~rc1-1 [566 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-2 [62.2 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf python3.5-minimal armhf 3.5.3~rc1-1 [1439 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf python3-minimal armhf 3.5.1-4 [35.3 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpython3.5-stdlib armhf 3.5.3~rc1-1 [2091 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf python3.5 armhf 3.5.3~rc1-1 [229 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpython3-stdlib armhf 3.5.1-4 [18.6 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf dh-python all 2.20160818 [83.0 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf python3 armhf 3.5.1-4 [21.7 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-2 [221 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-2 [104 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-2 [63.1 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 13 [15.8 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.029-2 [15.3 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.029-2 [9330 B]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.3 [829 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-4 [198 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libsigsegv2:armhf (2.10-5) ...
Setting up groff-base (1.22.3-9) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ...
Setting up libmagic-mgc (1:5.29-2) ...
Setting up libmagic1:armhf (1:5.29-2) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up libmpdec2:armhf (2.4.2-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (0.029-2) ...
Setting up libglib2.0-0:armhf (2.50.2-2) ...
No schema files found: doing nothing.
Setting up libpython3.5-stdlib:armhf (3.5.3~rc1-1) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.29-2) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up automake (1:1.15-5) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up python3.5 (3.5.3~rc1-1) ...
Setting up libpython3-stdlib:armhf (3.5.1-4) ...
Setting up gettext (0.19.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up dh-python (2.20160818) ...
Setting up dh-autoreconf (13) ...
Setting up python3 (3.5.1-4) ...
Setting up dh-strip-nondeterminism (0.029-2) ...
Setting up debhelper (10.2.3) ...
Setting up sbuild-build-depends-ecopcr-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161127-1 dpkg-dev_1.18.15 g++-6_6.2.1-5+rpi1 gcc-6_6.2.1-5+rpi1 libc6-dev_2.24-7+rpi1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.4~beta1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.7+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161127-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-6 cpp_4:6.1.1-1 cpp-6_6.2.1-5+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.3 debianutils_4.8.1 dh-autoreconf_13 dh-python_2.20160818 dh-strip-nondeterminism_0.029-2 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.1-5+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.1-5+rpi1 gcc-6-base_6.2.1-5+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libapparmor1_2.10.95-6 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan1_4.9.3-14 libasan3_6.2.1-5+rpi1 libassuan0_2.4.3-2 libatomic1_6.2.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblkid1_2.29-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-7+rpi1 libc-dev-bin_2.24-7+rpi1 libc6_2.24-7+rpi1 libc6-dev_2.24-7+rpi1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.1-5+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.14-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.136-1 libdpkg-perl_1.18.15 libdrm2_2.4.74-1 libexpat1_2.2.0-2 libfakeroot_1.21-2 libfdisk1_2.29-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.029-2 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-6-dev_6.2.1-5+rpi1 libgcc1_1:6.2.1-5+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libglib2.0-0_2.50.2-2 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.2.1-5+rpi1 libgpg-error0_1.25-1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_23-1 libksba8_1.3.5-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnpth0_1.3-1 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps6_2:3.3.12-3 libpython3-stdlib_3.5.1-4 libpython3.5-minimal_3.5.3~rc1-1 libpython3.5-stdlib_3.5.3~rc1-1 libreadline7_7.0-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libslang2_2.3.1-5 libsmartcols1_2.29-1 libsqlite3-0_3.15.2-1 libss2_1.43.3-1 libssl1.1_1.1.0c-2 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 libsystemd0_232-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.2.1-5+rpi1 libudev1_232-6 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.3 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9 makedev_2.3.1-93 man-db_2.7.6.1-2 manpages_4.08-1 mawk_1.3.3-17 mime-support_3.60 mount_2.29-1 multiarch-support_2.24-7+rpi1 nano_2.7.1-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 passwd_1:4.2-3.3 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 python3_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.3~rc1-1 python3.5-minimal_3.5.3~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ecopcr-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 udev_232-6 util-linux_2.29-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4 zlib1g-dev_1:1.2.8.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 11 19:30:07 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ecopcr_0.5.0+dfsg-1.dsc
dpkg-source: info: extracting ecopcr in /<<BUILDDIR>>/ecopcr-0.5.0+dfsg
dpkg-source: info: unpacking ecopcr_0.5.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking ecopcr_0.5.0+dfsg-1.debian.tar.xz
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying ecoisundertaxon.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying hardening.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-441e06f9-2ef0-4697-966b-bd50733540f7
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ecopcr
dpkg-buildpackage: info: source version 0.5.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build ecopcr-0.5.0+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src --with python3
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src'
rm -f *.o
rm -f ecoPCR ecofind ecogrep ecoisundertaxon
make -C libapat clean
make[3]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libapat'
rm -rf apat_parse.o apat_search.o libstki.o libapat.a
make[3]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libapat'
make -C libecoPCR clean
make[3]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libecoPCR'
rm -rf ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o libecoPCR.a
make[3]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libecoPCR'
make -C libthermo clean
make[3]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libthermo'
rm -rf nnparams.o libthermo.a
make[3]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libthermo'
make[2]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src'
find . -type f -name "*.P" -delete
make[1]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg'
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src --with python3
dh_testdir -a -O--sourcedirectory=src
dh_update_autotools_config -a -O--sourcedirectory=src
dh_autoreconf -a -O--sourcedirectory=src
dh_auto_configure -a -O--sourcedirectory=src
dh_auto_build -a -O--sourcedirectory=src
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src'
global.mk:18: ecopcr.P: No such file or directory
global.mk:18: ecofind.P: No such file or directory
global.mk:18: ecoisundertaxon.P: No such file or directory
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoisundertaxon.d ecoisundertaxon.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofind.d ecofind.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecopcr.d ecopcr.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -c -o ecopcr.o ecopcr.c
make -C libapat
make -C libecoPCR
make -C libthermo
make[2]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libapat'
../global.mk:18: apat_parse.P: No such file or directory
../global.mk:18: apat_search.P: No such file or directory
../global.mk:18: libstki.P: No such file or directory
make[2]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libecoPCR'
../global.mk:18: ecoapat.P: No such file or directory
../global.mk:18: ecodna.P: No such file or directory
../global.mk:18: ecoError.P: No such file or directory
../global.mk:18: ecoIOUtils.P: No such file or directory
../global.mk:18: ecoMalloc.P: No such file or directory
../global.mk:18: ecorank.P: No such file or directory
../global.mk:18: ecoseq.P: No such file or directory
../global.mk:18: ecotax.P: No such file or directory
../global.mk:18: ecofilter.P: No such file or directory
../global.mk:18: econame.P: No such file or directory
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o libstki.d libstki.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o econame.d econame.c
make[2]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libthermo'
../global.mk:18: nnparams.P: No such file or directory
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o nnparams.d nnparams.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_search.d apat_search.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofilter.d ecofilter.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o nnparams.o nnparams.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecotax.d ecotax.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_parse.d apat_parse.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoseq.d ecoseq.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o apat_parse.o apat_parse.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecorank.d ecorank.c
ecopcr.c: In function 'printRepeat':
ecopcr.c:146:11: warning: variable 'tm' set but not used [-Wunused-but-set-variable]
double tm=0;
^~
ecopcr.c: In function 'main':
ecopcr.c:513:9: warning: variable 'tm' set but not used [-Wunused-but-set-variable]
double tm,tm1,tm2;
^~
ecopcr.c:337:16: warning: variable 'amplifiatCount' set but not used [-Wunused-but-set-variable]
int32_t amplifiatCount = 0;
^~~~~~~~~~~~~~
ecopcr.c:336:16: warning: variable 'positiveSequence' set but not used [-Wunused-but-set-variable]
int32_t positiveSequence= 0;
^~~~~~~~~~~~~~~~
ecopcr.c:312:17: warning: variable 'scname' set but not used [-Wunused-but-set-variable]
char *scname;
^~~~~~
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoMalloc.d ecoMalloc.c
nnparams.c: In function 'nparam_CalcSelfTM':
nnparams.c:523:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
const double NaN = *((double*)&minus1);
^~~~~
nnparams.c:541:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( i=1;i<len;i++)
^
nnparams.c:549:21: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:549:25: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:549:29: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:549:33: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c: In function 'nparam_CalcTwoTM':
nnparams.c:562:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
const double NaN = *((double*)&minus1);
^~~~~
nnparams.c:588:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( i=1;i<len;i++)
^
nnparams.c:597:21: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:597:25: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:597:29: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:597:33: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoIOUtils.d ecoIOUtils.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoError.d ecoError.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecodna.d ecodna.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoapat.d ecoapat.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoapat.o ecoapat.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o apat_search.o apat_search.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecodna.o ecodna.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoError.o ecoError.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoIOUtils.o ecoIOUtils.c
apat_search.c: In function 'NwsPatAlign':
apat_search.c:291:12: warning: array subscript is below array bounds [-Warray-bounds]
pi = pc - 1; /* | ps | pd | | */
~~~^~~~~~~~
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o libstki.o libstki.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoMalloc.o ecoMalloc.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecorank.o ecorank.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoseq.o ecoseq.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecotax.o ecotax.c
ecoseq.c: In function 'readnext_ecoseq':
ecoseq.c:145:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (c=seq->SQ,i=0;i<seqlength;c++,i++)
^
ecoseq.c:145:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (c=seq->SQ,i=0;i<seqlength;c++,i++)
^~~
ecoseq.c:149:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'for'
return seq;
^~~~~~
ar -cr libapat.a apat_parse.o apat_search.o libstki.o
ranlib libapat.a
make[2]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libapat'
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -c -o ecofind.o ecofind.c
ecoseq.c: In function 'ecoseq_iterator':
ecoseq.c:205:17: warning: array subscript is above array bounds [-Warray-bounds]
current_prefix[1024]=0;
~~~~~~~~~~~~~~^~~~~~
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecofilter.o ecofilter.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o econame.o econame.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -c -o ecogrep.o ecogrep.c
ar -cr libecoPCR.a ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o
ranlib libecoPCR.a
make[2]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libecoPCR'
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -c -o ecoisundertaxon.o ecoisundertaxon.c
ecogrep.c: In function 'main':
ecogrep.c:317:8: warning: implicit declaration of function 'isatty' [-Wimplicit-function-declaration]
if (isatty(fileno(stdin)) == 0)
^~~~~~
ecoisundertaxon.c: In function 'main':
ecoisundertaxon.c:104:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if (errflag)
^~
ecoisundertaxon.c:107:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
taxonomy = read_taxonomy(argv[optind],0);
^~~~~~~~
ar -cr libthermo.a nnparams.o
ranlib libthermo.a
make[2]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libthermo'
gcc -Wl,-z,relro -Wl,-z,now -o ecoPCR ecopcr.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecofind ecofind.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecogrep ecogrep.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecoisundertaxon ecoisundertaxon.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
make[1]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src'
dh_auto_test -a -O--sourcedirectory=src
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src --with python3
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
dh_auto_install -a -O--sourcedirectory=src
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg'
dh_install
for tool in tools/* ; do \
cp -a ${tool} debian/ecopcr/usr/bin/`basename ${tool} .py` ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg'
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_python3 -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
dh_strip_nondeterminism -a -O--sourcedirectory=src
dh_compress -a -O--sourcedirectory=src
dh_fixperms -a -O--sourcedirectory=src
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ecopcr/usr/bin/ecofind debian/ecopcr/usr/bin/ecoPCR debian/ecopcr/usr/bin/ecoisundertaxon debian/ecopcr/usr/bin/ecogrep were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'ecopcr-dbgsym' in '../ecopcr-dbgsym_0.5.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'ecopcr' in '../ecopcr_0.5.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../ecopcr_0.5.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build ecopcr-0.5.0+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-01-22T04:50:04Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ecopcr_0.5.0+dfsg-1_armhf.changes:
----------------------------------
Format: 1.8
Date: Wed, 11 Jan 2017 20:29:03 +0100
Source: ecopcr
Binary: ecopcr
Architecture: armhf
Version: 0.5.0+dfsg-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
ecopcr - estimate PCR barcode primers quality
Changes:
ecopcr (0.5.0+dfsg-1) unstable; urgency=medium
.
* Fix copyright
* Adapt watch file to freshly created tags
* cme fix dpkg-control
* debhelper 10
* hardening=+all
* fix some spelling issues
Checksums-Sha1:
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e88713db2191ca533f9986481c9831c5eaed9724 4827 ecopcr_0.5.0+dfsg-1_armhf.buildinfo
9bc8b43d63f31e1e2380388ff8e8472a6fcb47de 46570 ecopcr_0.5.0+dfsg-1_armhf.deb
Checksums-Sha256:
8b4a29079519548774f078d16f6cf50db432e9c6aae68bbf5a7c8a75d2de1769 93728 ecopcr-dbgsym_0.5.0+dfsg-1_armhf.deb
f6249ca69b4787316d362c85fa1d9504d6bae834154262894bb385d5dfe96a55 4827 ecopcr_0.5.0+dfsg-1_armhf.buildinfo
dcbe65dd98a408284b296327a261017aa51c35c464ed630c3f9ea2acb2a2c96e 46570 ecopcr_0.5.0+dfsg-1_armhf.deb
Files:
cfb04675428037577cd9eb5c445d455a 93728 debug extra ecopcr-dbgsym_0.5.0+dfsg-1_armhf.deb
3da0250fab556826c11120735abc5eb0 4827 science optional ecopcr_0.5.0+dfsg-1_armhf.buildinfo
9536f32813f00c10e9ca727d888a736a 46570 science optional ecopcr_0.5.0+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ecopcr-dbgsym_0.5.0+dfsg-1_armhf.deb
------------------------------------
new debian package, version 2.0.
size 93728 bytes: control archive=668 bytes.
548 bytes, 13 lines control
424 bytes, 4 lines md5sums
Package: ecopcr-dbgsym
Source: ecopcr
Version: 0.5.0+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 137
Depends: ecopcr (= 0.5.0+dfsg-1)
Section: debug
Priority: extra
Homepage: http://www.grenoble.prabi.fr/trac/ecoPCR/
Description: Debug symbols for ecopcr
Auto-Built-Package: debug-symbols
Build-Ids: 6ca038b106bfa8cc8ae2736bfc80c09fa3ea10eb 998976684948a83655923acd5143bd8a5b4340c6 ef338e19e279e51a845b5724400d6099912930cb efaa27a7902eba262c29155689c53a9641cbf465
drwxr-xr-x root/root 0 2017-01-11 19:29 ./
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/6c/
-rw-r--r-- root/root 38476 2017-01-11 19:29 ./usr/lib/debug/.build-id/6c/a038b106bfa8cc8ae2736bfc80c09fa3ea10eb.debug
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/99/
-rw-r--r-- root/root 22260 2017-01-11 19:29 ./usr/lib/debug/.build-id/99/8976684948a83655923acd5143bd8a5b4340c6.debug
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/ef/
-rw-r--r-- root/root 47040 2017-01-11 19:29 ./usr/lib/debug/.build-id/ef/338e19e279e51a845b5724400d6099912930cb.debug
-rw-r--r-- root/root 18952 2017-01-11 19:29 ./usr/lib/debug/.build-id/ef/aa27a7902eba262c29155689c53a9641cbf465.debug
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-01-11 19:29 ./usr/share/doc/ecopcr-dbgsym -> ecopcr
ecopcr_0.5.0+dfsg-1_armhf.deb
-----------------------------
new debian package, version 2.0.
size 46570 bytes: control archive=1430 bytes.
1446 bytes, 27 lines control
849 bytes, 14 lines md5sums
Package: ecopcr
Version: 0.5.0+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 184
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4), python3:any, python3-reportlab
Section: science
Priority: optional
Homepage: http://www.grenoble.prabi.fr/trac/ecoPCR/
Description: estimate PCR barcode primers quality
DNA barcoding is a tool for characterizing the species origin using a
short sequence from a standard position and agreed upon position in the
genome. To be used as a DNA barcode, a genome locus should vary among
individuals of the same species only to a minor degree and it should
vary among species very quickly. From a practical point of view, a
barcode locus should be flanked by two conserved regions to design PCR
primers. Several manually discovered barcode loci like COI, rbcL, 18S,
16S and 23S rDNA, or trnH-ps are routinely used today, but no objective
function has been described to measure their quality in terms of
universality (barcode coverage, Bc ) or in terms of taxonomical
discrimination capacity (barcode specificity, Bs ).
.
ecoPCR is an electronic PCR software developed by LECA and
Helix-Project. It helps to estimate Barcode primers quality. In
conjunction with OBITools you can postprocess ecoPCR output to compute
barcode coverage and barcode specificity. New barcode primers can be
developed using the ecoPrimers software
drwxr-xr-x root/root 0 2017-01-11 19:29 ./
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/bin/
-rwxr-xr-x root/root 38716 2017-01-11 19:29 ./usr/bin/ecoPCR
-rwxr-xr-x root/root 8805 2017-01-11 19:29 ./usr/bin/ecoPCRFilter
-rwxr-xr-x root/root 18762 2017-01-11 19:29 ./usr/bin/ecoPCRFormat
-rwxr-xr-x root/root 22118 2017-01-11 19:29 ./usr/bin/ecoSort
-rwxr-xr-x root/root 17888 2017-01-11 19:29 ./usr/bin/ecofind
-rwxr-xr-x root/root 26428 2017-01-11 19:29 ./usr/bin/ecogrep
-rwxr-xr-x root/root 13792 2017-01-11 19:29 ./usr/bin/ecoisundertaxon
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/doc/ecopcr/
-rw-r--r-- root/root 289 2017-01-11 19:29 ./usr/share/doc/ecopcr/changelog.Debian.gz
-rw-r--r-- root/root 22359 2017-01-11 19:29 ./usr/share/doc/ecopcr/copyright
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/man/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/man/man1/
-rw-r--r-- root/root 1243 2017-01-11 19:29 ./usr/share/man/man1/ecoPCR.1.gz
-rw-r--r-- root/root 464 2017-01-11 19:29 ./usr/share/man/man1/ecoPCRFormat.1.gz
-rw-r--r-- root/root 746 2017-01-11 19:29 ./usr/share/man/man1/ecofind.1.gz
-rw-r--r-- root/root 646 2017-01-11 19:29 ./usr/share/man/man1/ecogrep.1.gz
-rw-r--r-- root/root 558 2017-01-11 19:29 ./usr/share/man/man1/ecoisundertaxon.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 37832
Build-Time: 55
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 307
Job: ecopcr_0.5.0+dfsg-1
Machine Architecture: armhf
Package: ecopcr
Package-Time: 431
Source-Version: 0.5.0+dfsg-1
Space: 37832
Status: successful
Version: 0.5.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2017-01-22T04:50:04Z
Build needed 00:07:11, 37832k disc space