ecopcr →
0.5.0+dfsg-1+b1 →
armhf → 2017-08-01 20:57:07
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| ecopcr 0.5.0+dfsg-1+b1 (armhf) Tue, 01 Aug 2017 20:45:05 +0000 |
+==============================================================================+
Package: ecopcr
Version: 0.5.0+dfsg-1+b1
Source Version: 0.5.0+dfsg-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-d9ba72f9-58b1-414b-88fe-d5bd2c9f64b9' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [11.9 MB]
Fetched 22.0 MB in 24s (879 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ecopcr' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/ecopcr.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/ecopcr.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 24.9 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main ecopcr 0.5.0+dfsg-1 (dsc) [2012 B]
Get:2 http://172.17.0.1/private buster-staging/main ecopcr 0.5.0+dfsg-1 (tar) [24.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main ecopcr 0.5.0+dfsg-1 (diff) [15.7 kB]
Fetched 24.9 MB in 3s (6923 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ecopcr-I58HcC/ecopcr-0.5.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ecopcr-I58HcC' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-B3rJBL/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-B3rJBL/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-B3rJBL/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (2835 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-B3rJBL/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 15 not upgraded.
Need to get 770 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 770 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14837 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), dh-python, python3, zlib1g-dev
Filtered Build-Depends: debhelper (>= 10), dh-python, python3, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-ecopcr-dummy' in '/<<BUILDDIR>>/resolver-B3rJBL/apt_archive/sbuild-build-depends-ecopcr-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-ecopcr-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Sources [505 B]
Get:5 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Packages [585 B]
Fetched 2423 B in 0s (3163 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-B3rJBL/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install ecopcr build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db
mime-support po-debconf python3 python3-minimal python3.5 python3.5-minimal
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl python3-doc python3-tk python3-venv python3.5-venv
python3.5-doc binfmt-support
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libicu57 libmagic-mgc
libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.5-minimal
libpython3.5-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db
mime-support po-debconf python3 python3-minimal python3.5 python3.5-minimal
sbuild-build-depends-ecopcr-dummy zlib1g-dev
0 upgraded, 42 newly installed, 0 to remove and 15 not upgraded.
Need to get 23.5 MB of archives.
After this operation, 87.1 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-B3rJBL/apt_archive ./ sbuild-build-depends-ecopcr-dummy 0.invalid.0 [796 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython3.5-minimal armhf 3.5.4~rc1-1 [573 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.2-2 [66.3 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python3.5-minimal armhf 3.5.4~rc1-1 [1451 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.5.3-3 [35.4 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-1 [67.5 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython3.5-stdlib armhf 3.5.4~rc1-1 [2117 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python3.5 armhf 3.5.4~rc1-1 [241 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.5.3-3 [18.8 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf dh-python all 2.20170125 [86.8 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.5.3-3 [21.8 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.30-1 [222 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.30-1 [105 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.30-1 [63.4 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-2+b1 [117 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-3 [601 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2 [736 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.52.3-1 [2576 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-2+b1 [1220 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.6.4 [970 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up gettext-base (0.19.8.1-2+b1) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-6) ...
Setting up libbsd0:armhf (0.8.6-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-3) ...
Setting up libmagic-mgc (1:5.30-1) ...
Setting up libmagic1:armhf (1:5.30-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Processing triggers for libc-bin (2.24-12) ...
Setting up autotools-dev (20161112.1) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-2) ...
Setting up libmpdec2:armhf (2.4.2-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.038-1) ...
Setting up gettext (0.19.8.1-2+b1) ...
Setting up libpython3.5-stdlib:armhf (3.5.4~rc1-1) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.30-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15.1-2) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up python3.5 (3.5.4~rc1-1) ...
Setting up libpython3-stdlib:armhf (3.5.3-3) ...
Setting up po-debconf (1.0.20) ...
Setting up dh-python (2.20170125) ...
Setting up dh-autoreconf (14) ...
Setting up python3 (3.5.3-3) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up debhelper (10.6.4) ...
Setting up sbuild-build-depends-ecopcr-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-12) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1+rpi1 gcc-6_6.4.0-1+rpi1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.5~beta1+b3 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1+rpi1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.6.4 debianutils_4.8.1.1 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.038-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-3.1 file_1:5.30-1 findutils_4.6.0+git+20170606-3 g++_4:6.3.0-4d1 g++-6_6.4.0-1+rpi1 gcc_4:6.3.0-4d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6_6.4.0-1+rpi1 gcc-6-base_6.4.0-1+rpi1 gcc-7-base_7.1.0-9+rpi1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.48 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-6 libapt-pkg5.0_1.5~beta1+b3 libarchive-zip-perl_1.59-1 libasan3_6.4.0-1+rpi1 libassuan0_2.4.3-2 libatomic1_7.1.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1 libblkid1_2.29.2-2+rpi1 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-9+rpi1 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libdb5.3_5.3.28-12 libdbus-1-3_1.10.20-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm2_2.4.81-2+rpi1 libexpat1_2.2.2-2 libfakeroot_1.21-3.1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-6-dev_6.4.0-1+rpi1 libgcc1_1:7.1.0-9+rpi1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.52.3-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-9+rpi1 libgpg-error0_1.27-3 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2 libisl15_0.18-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-7 libperl5.26_5.26.0-4 libpipeline1_1.4.2-1 libplymouth4_0.9.2-4 libpng16-16_1.6.30-2 libprocps6_2:3.3.12-3 libpython3-stdlib_3.5.3-3 libpython3.5-minimal_3.5.4~rc1-1 libpython3.5-stdlib_3.5.4~rc1-1 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.4-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 libsystemd0_233-10 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.1.0-9+rpi1 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libxml2_2.9.4+dfsg1-3 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-12 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-3 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-4 perl-base_5.26.0-4 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-4 pinentry-curses_1.0.0-2 plymouth_0.9.2-4 po-debconf_1.0.20 procps_2:3.3.12-3 python3_3.5.3-3 python3-minimal_3.5.3-3 python3.5_3.5.4~rc1-1 python3.5-minimal_3.5.4~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-ecopcr-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 systemd_233-10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_233-10 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 11 19:30:07 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ecopcr_0.5.0+dfsg-1.dsc
dpkg-source: info: extracting ecopcr in /<<BUILDDIR>>/ecopcr-0.5.0+dfsg
dpkg-source: info: unpacking ecopcr_0.5.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking ecopcr_0.5.0+dfsg-1.debian.tar.xz
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying ecoisundertaxon.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying hardening.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.5.0+dfsg-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-d9ba72f9-58b1-414b-88fe-d5bd2c9f64b9
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ecopcr
dpkg-buildpackage: info: source version 0.5.0+dfsg-1+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build ecopcr-0.5.0+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --sourcedirectory=src --with python3
dh_testdir -O--sourcedirectory=src
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src'
rm -f *.o
rm -f ecoPCR ecofind ecogrep ecoisundertaxon
make -C libapat clean
make[3]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libapat'
rm -rf apat_parse.o apat_search.o libstki.o libapat.a
make[3]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libapat'
make -C libecoPCR clean
make[3]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libecoPCR'
rm -rf ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o libecoPCR.a
make[3]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libecoPCR'
make -C libthermo clean
make[3]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libthermo'
rm -rf nnparams.o libthermo.a
make[3]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libthermo'
make[2]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src'
find . -type f -name "*.P" -delete
make[1]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg'
dh_autoreconf_clean -O--sourcedirectory=src
dh_clean -O--sourcedirectory=src
debian/rules build-arch
dh build-arch --sourcedirectory=src --with python3
dh_testdir -a -O--sourcedirectory=src
dh_update_autotools_config -a -O--sourcedirectory=src
dh_autoreconf -a -O--sourcedirectory=src
dh_auto_configure -a -O--sourcedirectory=src
dh_auto_build -a -O--sourcedirectory=src
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src'
global.mk:18: ecopcr.P: No such file or directory
global.mk:18: ecofind.P: No such file or directory
global.mk:18: ecoisundertaxon.P: No such file or directory
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoisundertaxon.d ecoisundertaxon.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofind.d ecofind.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecopcr.d ecopcr.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -c -o ecopcr.o ecopcr.c
make -C libapat
make -C libecoPCR
make -C libthermo
make[2]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libapat'
../global.mk:18: apat_parse.P: No such file or directory
../global.mk:18: apat_search.P: No such file or directory
make[2]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libecoPCR'
../global.mk:18: ecoapat.P: No such file or directory
../global.mk:18: ecodna.P: No such file or directory
../global.mk:18: ecoError.P: No such file or directory
../global.mk:18: ecoIOUtils.P: No such file or directory
../global.mk:18: ecoMalloc.P: No such file or directory
../global.mk:18: ecorank.P: No such file or directory
../global.mk:18: ecoseq.P: No such file or directory
../global.mk:18: ecotax.P: No such file or directory
../global.mk:18: ecofilter.P: No such file or directory
../global.mk:18: econame.P: No such file or directory
make[2]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libthermo'
../global.mk:18: nnparams.P: No such file or directory
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o econame.d econame.c
../global.mk:18: libstki.P: No such file or directory
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o nnparams.d nnparams.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o libstki.d libstki.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_search.d apat_search.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecofilter.d ecofilter.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o nnparams.o nnparams.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecotax.d ecotax.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o apat_parse.d apat_parse.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoseq.d ecoseq.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o apat_parse.o apat_parse.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecorank.d ecorank.c
ecopcr.c: In function 'printRepeat':
ecopcr.c:146:11: warning: variable 'tm' set but not used [-Wunused-but-set-variable]
double tm=0;
^~
ecopcr.c: In function 'main':
ecopcr.c:513:9: warning: variable 'tm' set but not used [-Wunused-but-set-variable]
double tm,tm1,tm2;
^~
ecopcr.c:337:16: warning: variable 'amplifiatCount' set but not used [-Wunused-but-set-variable]
int32_t amplifiatCount = 0;
^~~~~~~~~~~~~~
ecopcr.c:336:16: warning: variable 'positiveSequence' set but not used [-Wunused-but-set-variable]
int32_t positiveSequence= 0;
^~~~~~~~~~~~~~~~
ecopcr.c:312:17: warning: variable 'scname' set but not used [-Wunused-but-set-variable]
char *scname;
^~~~~~
nnparams.c: In function 'nparam_CalcSelfTM':
nnparams.c:523:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
const double NaN = *((double*)&minus1);
^~~~~
nnparams.c:541:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( i=1;i<len;i++)
^
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoMalloc.d ecoMalloc.c
nnparams.c:549:21: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:549:25: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:549:29: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:549:33: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c: In function 'nparam_CalcTwoTM':
nnparams.c:562:2: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
const double NaN = *((double*)&minus1);
^~~~~
nnparams.c:588:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( i=1;i<len;i++)
^
nnparams.c:597:21: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:597:25: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:597:29: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
nnparams.c:597:33: warning: array subscript has type 'char' [-Wchar-subscripts]
thedH += nparm->dH[c3][c4][c1][c2];//nparam_GetEnthalpy(nparm, c3,c4,c1,c2);
^
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoIOUtils.d ecoIOUtils.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoError.d ecoError.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecodna.d ecodna.c
gcc -DLINUX -M -Wdate-time -D_FORTIFY_SOURCE=2 -o ecoapat.d ecoapat.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoapat.o ecoapat.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o apat_search.o apat_search.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecodna.o ecodna.c
apat_search.c: In function 'NwsPatAlign':
apat_search.c:291:12: warning: array subscript is below array bounds [-Warray-bounds]
pi = pc - 1; /* | ps | pd | | */
~~~^~~~~~~~
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoError.o ecoError.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoIOUtils.o ecoIOUtils.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o libstki.o libstki.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -c -o ecofind.o ecofind.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoMalloc.o ecoMalloc.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecorank.o ecorank.c
ar -cr libapat.a apat_parse.o apat_search.o libstki.o
ranlib libapat.a
make[2]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libapat'
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecoseq.o ecoseq.c
ecoseq.c: In function 'readnext_ecoseq':
ecoseq.c:145:25: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (c=seq->SQ,i=0;i<seqlength;c++,i++)
^
ecoseq.c:145:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
for (c=seq->SQ,i=0;i<seqlength;c++,i++)
^~~
ecoseq.c:149:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'for'
return seq;
^~~~~~
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -c -o ecogrep.o ecogrep.c
ecogrep.c: In function 'main':
ecogrep.c:317:8: warning: implicit declaration of function 'isatty' [-Wimplicit-function-declaration]
if (isatty(fileno(stdin)) == 0)
^~~~~~
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecotax.o ecotax.c
ecoseq.c: In function 'ecoseq_iterator':
ecoseq.c:205:17: warning: array subscript is above array bounds [-Warray-bounds]
current_prefix[1024]=0;
~~~~~~~~~~~~~~^~~~~~
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -c -o ecoisundertaxon.o ecoisundertaxon.c
ecoisundertaxon.c: In function 'main':
ecoisundertaxon.c:104:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if (errflag)
^~
ecoisundertaxon.c:107:2: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
taxonomy = read_taxonomy(argv[optind],0);
^~~~~~~~
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o ecofilter.o ecofilter.c
gcc -DLINUX -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ecopcr-0.5.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -O2 -g -W -Wall -O2 -g -c -o econame.o econame.c
ar -cr libecoPCR.a ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o
ranlib libecoPCR.a
make[2]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libecoPCR'
ar -cr libthermo.a nnparams.o
ranlib libthermo.a
make[2]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src/libthermo'
gcc -Wl,-z,relro -Wl,-z,now -o ecoPCR ecopcr.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecofind ecofind.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecogrep ecogrep.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -Wl,-z,relro -Wl,-z,now -o ecoisundertaxon ecoisundertaxon.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
make[1]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg/src'
dh_auto_test -a -O--sourcedirectory=src
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --sourcedirectory=src --with python3
dh_testroot -a -O--sourcedirectory=src
dh_prep -a -O--sourcedirectory=src
dh_auto_install -a -O--sourcedirectory=src
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg'
dh_install
for tool in tools/* ; do \
cp -a ${tool} debian/ecopcr/usr/bin/`basename ${tool} .py` ; \
done
make[1]: Leaving directory '/<<BUILDDIR>>/ecopcr-0.5.0+dfsg'
dh_installdocs -a -O--sourcedirectory=src
dh_installchangelogs -a -O--sourcedirectory=src
dh_installman -a -O--sourcedirectory=src
dh_python3 -a -O--sourcedirectory=src
dh_perl -a -O--sourcedirectory=src
dh_link -a -O--sourcedirectory=src
dh_strip_nondeterminism -a -O--sourcedirectory=src
dh_compress -a -O--sourcedirectory=src
dh_fixperms -a -O--sourcedirectory=src
dh_missing -a -O--sourcedirectory=src
dh_strip -a -O--sourcedirectory=src
dh_makeshlibs -a -O--sourcedirectory=src
dh_shlibdeps -a -O--sourcedirectory=src
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ecopcr/usr/bin/ecofind debian/ecopcr/usr/bin/ecoPCR debian/ecopcr/usr/bin/ecogrep debian/ecopcr/usr/bin/ecoisundertaxon were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a -O--sourcedirectory=src
dh_gencontrol -a -O--sourcedirectory=src
dh_md5sums -a -O--sourcedirectory=src
dh_builddeb -a -O--sourcedirectory=src
dpkg-deb: building package 'ecopcr' in '../ecopcr_0.5.0+dfsg-1+b1_armhf.deb'.
dpkg-deb: building package 'ecopcr-dbgsym' in '../ecopcr-dbgsym_0.5.0+dfsg-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../ecopcr_0.5.0+dfsg-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build ecopcr-0.5.0+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-08-01T20:53:17Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ecopcr_0.5.0+dfsg-1+b1_armhf.changes:
-------------------------------------
Format: 1.8
Date: Wed, 11 Jan 2017 20:29:03 +0100
Source: ecopcr (0.5.0+dfsg-1)
Binary: ecopcr
Binary-Only: yes
Architecture: armhf
Version: 0.5.0+dfsg-1+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
ecopcr - estimate PCR barcode primers quality
Changes:
ecopcr (0.5.0+dfsg-1+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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7c8e871e6aced8b2e5caec9fd13c6424a473e80a 46914 ecopcr_0.5.0+dfsg-1+b1_armhf.deb
d3d00e35eba84441c0731736e99c3250888d3bad 5176 ecopcr_0.5.0+dfsg-1_armhf.buildinfo
Checksums-Sha256:
eaada70e7815f5825e35d16c3bb7785061f7f8f3fd5404ba33f5ca18805dab22 93714 ecopcr-dbgsym_0.5.0+dfsg-1+b1_armhf.deb
17283c5fb8ca7d6f3bc43594750edfe3224f9e4fce4256d29f1e462bf8a257c7 46914 ecopcr_0.5.0+dfsg-1+b1_armhf.deb
e9d41e15614d7c6f5cc176507d2c1c6350df9f70461e4da6efc53d1fd6049aa6 5176 ecopcr_0.5.0+dfsg-1_armhf.buildinfo
Files:
f259aa5c41c8c4b681b1e20c3c7b9af2 93714 debug extra ecopcr-dbgsym_0.5.0+dfsg-1+b1_armhf.deb
900ac091047f9a8ebf49cf62cb62b6c9 46914 science optional ecopcr_0.5.0+dfsg-1+b1_armhf.deb
235ea16179ea211a3bd82decc9fd33a7 5176 science optional ecopcr_0.5.0+dfsg-1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ecopcr-dbgsym_0.5.0+dfsg-1+b1_armhf.deb
---------------------------------------
new debian package, version 2.0.
size 93714 bytes: control archive=637 bytes.
517 bytes, 12 lines control
424 bytes, 4 lines md5sums
Package: ecopcr-dbgsym
Source: ecopcr (0.5.0+dfsg-1)
Version: 0.5.0+dfsg-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 139
Depends: ecopcr (= 0.5.0+dfsg-1+b1)
Section: debug
Priority: extra
Description: Debug symbols for ecopcr
Build-Ids: 6af5531e2da255c0e2549b38f55c5cbad2ee3e1b 91b51c459153c9de3201e1f58b4bb2f2303d8e6b d546c183d477b2595b5714e4c736e13b7a3d5bbc e3d1aaae22252ee1d53749560aa6168f9d960e73
drwxr-xr-x root/root 0 2017-01-11 19:29 ./
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/6a/
-rw-r--r-- root/root 38548 2017-01-11 19:29 ./usr/lib/debug/.build-id/6a/f5531e2da255c0e2549b38f55c5cbad2ee3e1b.debug
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/91/
-rw-r--r-- root/root 22328 2017-01-11 19:29 ./usr/lib/debug/.build-id/91/b51c459153c9de3201e1f58b4bb2f2303d8e6b.debug
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/d5/
-rw-r--r-- root/root 47128 2017-01-11 19:29 ./usr/lib/debug/.build-id/d5/46c183d477b2595b5714e4c736e13b7a3d5bbc.debug
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/lib/debug/.build-id/e3/
-rw-r--r-- root/root 19012 2017-01-11 19:29 ./usr/lib/debug/.build-id/e3/d1aaae22252ee1d53749560aa6168f9d960e73.debug
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-01-11 19:29 ./usr/share/doc/ecopcr-dbgsym -> ecopcr
ecopcr_0.5.0+dfsg-1+b1_armhf.deb
--------------------------------
new debian package, version 2.0.
size 46914 bytes: control archive=1473 bytes.
1479 bytes, 28 lines control
930 bytes, 15 lines md5sums
Package: ecopcr
Source: ecopcr (0.5.0+dfsg-1)
Version: 0.5.0+dfsg-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 185
Depends: libc6 (>= 2.7), zlib1g (>= 1:1.1.4), python3:any, python3-reportlab
Section: science
Priority: optional
Homepage: http://www.grenoble.prabi.fr/trac/ecoPCR/
Description: estimate PCR barcode primers quality
DNA barcoding is a tool for characterizing the species origin using a
short sequence from a standard position and agreed upon position in the
genome. To be used as a DNA barcode, a genome locus should vary among
individuals of the same species only to a minor degree and it should
vary among species very quickly. From a practical point of view, a
barcode locus should be flanked by two conserved regions to design PCR
primers. Several manually discovered barcode loci like COI, rbcL, 18S,
16S and 23S rDNA, or trnH-ps are routinely used today, but no objective
function has been described to measure their quality in terms of
universality (barcode coverage, Bc ) or in terms of taxonomical
discrimination capacity (barcode specificity, Bs ).
.
ecoPCR is an electronic PCR software developed by LECA and
Helix-Project. It helps to estimate Barcode primers quality. In
conjunction with OBITools you can postprocess ecoPCR output to compute
barcode coverage and barcode specificity. New barcode primers can be
developed using the ecoPrimers software
drwxr-xr-x root/root 0 2017-01-11 19:29 ./
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/bin/
-rwxr-xr-x root/root 38768 2017-01-11 19:29 ./usr/bin/ecoPCR
-rwxr-xr-x root/root 8805 2017-01-11 19:29 ./usr/bin/ecoPCRFilter
-rwxr-xr-x root/root 18762 2017-01-11 19:29 ./usr/bin/ecoPCRFormat
-rwxr-xr-x root/root 22118 2017-01-11 19:29 ./usr/bin/ecoSort
-rwxr-xr-x root/root 17940 2017-01-11 19:29 ./usr/bin/ecofind
-rwxr-xr-x root/root 26480 2017-01-11 19:29 ./usr/bin/ecogrep
-rwxr-xr-x root/root 13844 2017-01-11 19:29 ./usr/bin/ecoisundertaxon
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/doc/ecopcr/
-rw-r--r-- root/root 222 2017-01-11 19:29 ./usr/share/doc/ecopcr/changelog.Debian.armhf.gz
-rw-r--r-- root/root 289 2017-01-11 19:29 ./usr/share/doc/ecopcr/changelog.Debian.gz
-rw-r--r-- root/root 22359 2017-01-11 19:29 ./usr/share/doc/ecopcr/copyright
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/man/
drwxr-xr-x root/root 0 2017-01-11 19:29 ./usr/share/man/man1/
-rw-r--r-- root/root 1243 2017-01-11 19:29 ./usr/share/man/man1/ecoPCR.1.gz
-rw-r--r-- root/root 464 2017-01-11 19:29 ./usr/share/man/man1/ecoPCRFormat.1.gz
-rw-r--r-- root/root 746 2017-01-11 19:29 ./usr/share/man/man1/ecofind.1.gz
-rw-r--r-- root/root 646 2017-01-11 19:29 ./usr/share/man/man1/ecogrep.1.gz
-rw-r--r-- root/root 558 2017-01-11 19:29 ./usr/share/man/man1/ecoisundertaxon.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 37844
Build-Time: 57
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 371
Job: ecopcr_0.5.0+dfsg-1
Machine Architecture: armhf
Package: ecopcr
Package-Time: 492
Source-Version: 0.5.0+dfsg-1
Space: 37844
Status: successful
Version: 0.5.0+dfsg-1+b1
--------------------------------------------------------------------------------
Finished at 2017-08-01T20:53:17Z
Build needed 00:08:12, 37844k disc space