dextractor →
1.0-6+b1 →
armhf → 2024-06-08 08:39:19
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| dextractor 1.0-6+b1 (armhf) Sat, 08 Jun 2024 08:38:41 +0000 |
+==============================================================================+
Package: dextractor
Version: 1.0-6+b1
Source Version: 1.0-6
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-d657e326-596a-47ee-aafd-4963ef11887a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/dextractor-LPGwuC/resolver-KnpMRl' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.6 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.3 MB]
Fetched 30.0 MB in 5s (5494 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'dextractor' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/dextractor.git
Please use:
git clone https://salsa.debian.org/med-team/dextractor.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 45.3 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main dextractor 1.0-6 (dsc) [1965 B]
Get:2 http://172.17.4.1/private trixie-staging/main dextractor 1.0-6 (tar) [37.8 kB]
Get:3 http://172.17.4.1/private trixie-staging/main dextractor 1.0-6 (diff) [5524 B]
Fetched 45.3 kB in 0s (545 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/dextractor-LPGwuC/dextractor-1.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/dextractor-LPGwuC' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libhdf5-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), libhdf5-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [630 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [662 B]
Fetched 1901 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates cron cron-daemon-common dbus dbus-bin dbus-daemon
dbus-session-bus-common dbus-system-bus-common dmsetup
libalgorithm-diff-perl libalgorithm-merge-perl libapparmor1
libarchive-cpio-perl libcryptsetup12 libdbus-1-3 libdevmapper1.02.1
libexpat1 libfdisk1 libfile-fcntllock-perl libjson-c5 libkmod2 libltdl-dev
libltdl7 libmail-sendmail-perl libsys-hostname-long-perl libsystemd-shared
netbase openssl systemd systemd-dev systemd-timesyncd
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
hdf5-helpers libaec-dev libaec0 libbrotli1 libcurl4-openssl-dev libcurl4t64
libgfortran5 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-cpp-103-1t64
libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64
libhdf5-hl-fortran-100t64 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libkrb5-3 libnghttp2-14 libpsl5t64 librtmp1 libssh2-1t64 libssl-dev libsz2
zlib1g-dev
Suggested packages:
libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
pkgconf krb5-doc krb5-user libhdf5-doc libssl-doc
Recommended packages:
krb5-locales publicsuffix
The following NEW packages will be installed:
hdf5-helpers libaec-dev libaec0 libbrotli1 libcurl4-openssl-dev libcurl4t64
libgfortran5 libgssapi-krb5-2 libhdf5-103-1t64 libhdf5-cpp-103-1t64
libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64
libhdf5-hl-fortran-100t64 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libkrb5-3 libnghttp2-14 libpsl5t64 librtmp1 libssh2-1t64 libssl-dev libsz2
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 27 newly installed, 0 to remove and 16 not upgraded.
Need to get 9788 kB of archives.
After this operation, 34.4 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [884 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf hdf5-helpers armhf 1.10.10+repack-3.3 [23.4 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libaec0 armhf 1.1.3-1 [21.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf libsz2 armhf 1.1.3-1 [7768 B]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libaec-dev armhf 1.1.3-1 [18.6 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libkrb5-3 armhf 1.20.1-6+b4 [286 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b4 [111 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.61.0-1+b2 [63.2 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.7 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [52.5 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libssh2-1t64 armhf 1.11.0-4.1+rpi1 [197 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libcurl4t64 armhf 8.8.0-1 [389 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libcurl4-openssl-dev armhf 8.8.0-1 [474 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 14-20240221-2.1+rpi1 [256 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.3 [1219 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libhdf5-cpp-103-1t64 armhf 1.10.10+repack-3.3 [118 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libhdf5-fortran-102t64 armhf 1.10.10+repack-3.3 [78.4 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.3 [60.5 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-fortran-100t64 armhf 1.10.10+repack-3.3 [34.8 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libhdf5-hl-cpp-100t64 armhf 1.10.10+repack-3.3 [20.9 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [903 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-3 [258 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-3 [71.9 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libssl-dev armhf 3.2.1-3 [2310 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libhdf5-dev armhf 1.10.10+repack-3.3 [2332 kB]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 16338 files and directories currently installed.)
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Preparing to unpack .../01-libaec0_1.1.3-1_armhf.deb ...
Unpacking libaec0:armhf (1.1.3-1) ...
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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up hdf5-helpers (1.10.10+repack-3.3) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up libpsl5t64:armhf (0.21.2-1.1) ...
Setting up libnghttp2-14:armhf (1.61.0-1+b2) ...
Setting up libaec0:armhf (1.1.3-1) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-3) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ...
Setting up libssl-dev:armhf (3.2.1-3) ...
Setting up libgfortran5:armhf (14-20240221-2.1+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ...
Setting up libkrb5-3:armhf (1.20.1-6+b4) ...
Setting up libssh2-1t64:armhf (1.11.0-4.1+rpi1) ...
Setting up libsz2:armhf (1.1.3-1) ...
Setting up libaec-dev:armhf (1.1.3-1) ...
Setting up libjpeg-dev:armhf (1:2.1.5-3) ...
Setting up libgssapi-krb5-2:armhf (1.20.1-6+b4) ...
Setting up libcurl4t64:armhf (8.8.0-1) ...
Setting up libcurl4-openssl-dev:armhf (8.8.0-1) ...
Setting up libhdf5-103-1t64:armhf (1.10.10+repack-3.3) ...
Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-3.3) ...
Setting up libhdf5-cpp-103-1t64:armhf (1.10.10+repack-3.3) ...
Setting up libhdf5-fortran-102t64:armhf (1.10.10+repack-3.3) ...
Setting up libhdf5-hl-cpp-100t64:armhf (1.10.10+repack-3.3) ...
Setting up libhdf5-hl-fortran-100t64:armhf (1.10.10+repack-3.3) ...
Setting up libhdf5-dev (1.10.10+repack-3.3) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for man-db (2.12.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.38-8+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1+b1 dpkg-dev_1.22.6+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-16.1+rpi1 gcc-12_12.3.0-14+rpi1 gcc-13_13.2.0-16.1+rpi1 libc6-dev_2.38-8+rpi1 libstdc++-12-dev_12.3.0-14+rpi1 libstdc++-13-dev_13.2.0-16.1+rpi1 libstdc++6_14-20240221-2.1+rpi1 linux-libc-dev_6.5.6-1+rpi1+b1
Package versions: adduser_3.137 apt_2.9.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1+b1 binutils-arm-linux-gnueabihf_2.41-6+rpi1+b1 binutils-common_2.41-6+rpi1+b1 bsdextrautils_2.40.1-4+rpi1 bsdutils_1:2.40.1-4+rpi1 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-14+rpi1 cpp-13_13.2.0-16.1+rpi1 cpp-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 cron_3.0pl1-189 cron-daemon-common_3.0pl1-189 dash_0.5.12-8 dbus_1.14.10-4+b1 dbus-bin_1.14.10-4+b1 dbus-daemon_1.14.10-4+b1 dbus-session-bus-common_1.14.10-4 dbus-system-bus-common_1.14.10-4 debconf_1.5.86 debhelper_13.15.3 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dmsetup_2:1.02.196-1 dpkg_1.22.6+rpi1 dpkg-dev_1.22.6+rpi1 dwz_0.15-1+b2 e2fsprogs_1.47.1-1 fakeroot_1.33-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-14+rpi1 g++-13_13.2.0-16.1+rpi1 g++-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-14+rpi1 gcc-12-base_12.3.0-14+rpi1 gcc-13_13.2.0-16.1+rpi1 gcc-13-arm-linux-gnueabihf_13.2.0-16.1+rpi1 gcc-13-base_13.2.0-16.1+rpi1 gcc-14-base_14-20240221-2.1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hdf5-helpers_1.10.10+repack-3.3 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+rpi1 libaec-dev_1.1.3-1 libaec0_1.1.3-1 libalgorithm-diff-perl_1.201-1 libalgorithm-merge-perl_0.08-5 libapparmor1_3.0.13-2 libapt-pkg6.0t64_2.9.3 libarchive-cpio-perl_0.10-3 libarchive-zip-perl_1.68-1 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: dextractor
Binary: dextractor
Architecture: any
Version: 1.0-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Shayan Doust <hello@shayandoust.me>
Homepage: https://github.com/thegenemyers/DEXTRACTOR
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/dextractor
Vcs-Git: https://salsa.debian.org/med-team/dextractor.git
Build-Depends: debhelper-compat (= 13), libhdf5-dev
Package-List:
dextractor deb science optional arch=any
Checksums-Sha1:
9c8c1efe7555d54a49b1937296b86d5c890ad2b9 37833 dextractor_1.0.orig.tar.gz
b028612c202979f9650a0eeb5e651be7a2114b47 5524 dextractor_1.0-6.debian.tar.xz
Checksums-Sha256:
5f45ab8944f857fc30b7a0e762fbdc63d9b61f3303412deee29d7580c53272bc 37833 dextractor_1.0.orig.tar.gz
403c7548a456fb5c4f5f5b54194fff04665437a8eaf9437b802073eba2238221 5524 dextractor_1.0-6.debian.tar.xz
Files:
23c33f1871b792f35359323325614c94 37833 dextractor_1.0.orig.tar.gz
701aef56dc4809d154863f3cad2e51bb 5524 dextractor_1.0-6.debian.tar.xz
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gpgv: Signature made Thu Nov 3 12:39:03 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./dextractor_1.0-6.dsc: no acceptable signature found
dpkg-source: info: extracting dextractor in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking dextractor_1.0.orig.tar.gz
dpkg-source: info: unpacking dextractor_1.0-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_system_packaged_libhdf5-dev.patch
dpkg-source: info: applying cross.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.0-6+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-d657e326-596a-47ee-aafd-4963ef11887a
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package dextractor
dpkg-buildpackage: info: source version 1.0-6+b1
dpkg-buildpackage: info: source distribution trixie-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f dextract dexta undexta dexqv undexqv dextract.tar.gz
rm -fr *.dSYM
rm -f dextract.tar.gz
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -rf bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- ARGS="-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial"
make -j4 "INSTALL=install --strip-program=true" "ARGS=-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
#gcc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial/ -L/usr/lib/aarch64-linux-gnu/hdf5/serial/ -o dextract dextract.c DB.c QV.c -lhdf5
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexta dexta.c DB.c QV.c
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o dextract dextract.c DB.c QV.c -lhdf5
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexta undexta.c DB.c QV.c
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexqv dexqv.c DB.c QV.c
In function ‘writeBaxReads’,
inlined from ‘main’ at dextract.c:603:13:
dextract.c:399:30: warning: ‘b.delLimit’ may be used uninitialized [-Wmaybe-uninitialized]
399 | { if (delQV[a] == d)
| ^
dextract.c: In function ‘main’:
dextract.c:488:11: note: ‘b.delLimit’ was declared here
488 | BaxData b;
| ^
DB.c: In function ‘Open_DB’:
DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object]
530 | free(reads);
| ^~~~~~~~~~~
In function ‘Malloc’,
inlined from ‘Open_DB’ at DB.c:524:30:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
DB.c: In function ‘Open_DB’:
DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object]
530 | free(reads);
| ^~~~~~~~~~~
In function ‘Malloc’,
inlined from ‘Open_DB’ at DB.c:524:30:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
DB.c: In function ‘Open_DB’:
DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object]
530 | free(reads);
| ^~~~~~~~~~~
In function ‘Malloc’,
inlined from ‘Open_DB’ at DB.c:524:30:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
DB.c: In function ‘Open_DB’:
DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object]
530 | free(reads);
| ^~~~~~~~~~~
In function ‘Malloc’,
inlined from ‘Open_DB’ at DB.c:524:30:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
DB.c: In function ‘Read_All_Sequences’:
DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object]
1455 | free(seq);
| ^~~~~~~~~
In function ‘Malloc’,
inlined from ‘Read_All_Sequences’ at DB.c:1432:18:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
DB.c: In function ‘Read_All_Sequences’:
DB.c: In function ‘Read_All_Sequences’:
DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object]
1455 | free(seq);
| ^~~~~~~~~
DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object]
1455 | free(seq);
| ^~~~~~~~~
In function ‘Malloc’,
inlined from ‘Read_All_Sequences’ at DB.c:1432:18:
In function ‘Malloc’,
inlined from ‘Read_All_Sequences’ at DB.c:1432:18:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
DB.c: In function ‘Read_All_Sequences’:
DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object]
1455 | free(seq);
| ^~~~~~~~~
In function ‘Malloc’,
inlined from ‘Read_All_Sequences’ at DB.c:1432:18:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexqv undexqv.c DB.c QV.c
DB.c: In function ‘Open_DB’:
DB.c:530:11: warning: ‘free’ called on pointer ‘p’ with nonzero offset 40 [-Wfree-nonheap-object]
530 | free(reads);
| ^~~~~~~~~~~
In function ‘Malloc’,
inlined from ‘Open_DB’ at DB.c:524:30:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
DB.c: In function ‘Read_All_Sequences’:
DB.c:1455:15: warning: ‘free’ called on pointer ‘p’ with nonzero offset 1 [-Wfree-nonheap-object]
1455 | free(seq);
| ^~~~~~~~~
In function ‘Malloc’,
inlined from ‘Read_All_Sequences’ at DB.c:1432:18:
DB.c:85:12: note: returned from ‘malloc’
85 | if ((p = malloc(size)) == NULL)
| ^~~~~~~~~~~~
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/dextractor/ -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/dextractor AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir bin/
cp dextract dexta undexta dexqv undexqv bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'dextractor' in '../dextractor_1.0-6+b1_armhf.deb'.
dpkg-deb: building package 'dextractor-dbgsym' in '../dextractor-dbgsym_1.0-6+b1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../dextractor_1.0-6+b1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../dextractor_1.0-6+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-06-08T08:39:09Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
dextractor_1.0-6+b1_armhf.changes:
----------------------------------
Format: 1.8
Date: Sat, 08 Jun 2024 08:38:59 +0000
Source: dextractor (1.0-6)
Binary: dextractor dextractor-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.0-6+b1
Distribution: trixie-staging
Urgency: low
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Raspbian pi5 test autobuilder <root@raspbian.org>
Description:
dextractor - (d)extractor and compression command library
Changes:
dextractor (1.0-6+b1) trixie-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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9b03152f5e1151c611f744ce4d2f1c8730381668 6778 dextractor_1.0-6+b1_armhf.buildinfo
35ff173f5770018c7d942e99ca5f8bff8b8575ae 38364 dextractor_1.0-6+b1_armhf.deb
Checksums-Sha256:
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ebc85d7164e3b183e3cd8851af32478a3e51a75889832677d39288cd681fd857 38364 dextractor_1.0-6+b1_armhf.deb
Files:
2961fa607d5ebe052e6c38061ef26d73 237280 debug optional dextractor-dbgsym_1.0-6+b1_armhf.deb
98a2b8cee264b9bddc55ea004ba7f338 6778 science optional dextractor_1.0-6+b1_armhf.buildinfo
365922dd91afeec02c6f067993c2a500 38364 science optional dextractor_1.0-6+b1_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: dextractor (1.0-6)
Binary: dextractor dextractor-dbgsym
Architecture: armhf
Version: 1.0-6+b1
Binary-Only-Changes:
dextractor (1.0-6+b1) trixie-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
.
-- Raspbian pi5 test autobuilder <root@raspbian.org> Sat, 08 Jun 2024 08:38:59 +0000
Checksums-Md5:
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365922dd91afeec02c6f067993c2a500 38364 dextractor_1.0-6+b1_armhf.deb
Checksums-Sha1:
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35ff173f5770018c7d942e99ca5f8bff8b8575ae 38364 dextractor_1.0-6+b1_armhf.deb
Checksums-Sha256:
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ebc85d7164e3b183e3cd8851af32478a3e51a75889832677d39288cd681fd857 38364 dextractor_1.0-6+b1_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 08 Jun 2024 08:39:08 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13.2+rpi1),
base-passwd (= 3.6.3),
bash (= 5.2.21-2),
binutils (= 2.41-6+rpi1+b1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1+b1),
binutils-common (= 2.41-6+rpi1+b1),
bsdextrautils (= 2.40.1-4+rpi1),
bsdutils (= 1:2.40.1-4+rpi1),
build-essential (= 12.10),
bzip2 (= 1.0.8-5.1),
coreutils (= 9.4-3.1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-14+rpi1),
cpp-13 (= 13.2.0-16.1+rpi1),
cpp-13-arm-linux-gnueabihf (= 13.2.0-16.1+rpi1),
dash (= 0.5.12-8),
debconf (= 1.5.86),
debhelper (= 13.15.3),
debianutils (= 5.17),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.6+rpi1),
dpkg-dev (= 1.22.6+rpi1),
dwz (= 0.15-1+b2),
file (= 1:5.45-3),
findutils (= 4.9.0-6),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-16.1+rpi1),
g++-13-arm-linux-gnueabihf (= 13.2.0-16.1+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-14+rpi1),
gcc-12-base (= 12.3.0-14+rpi1),
gcc-13 (= 13.2.0-16.1+rpi1),
gcc-13-arm-linux-gnueabihf (= 13.2.0-16.1+rpi1),
gcc-13-base (= 13.2.0-16.1+rpi1),
gcc-14-base (= 14-20240221-2.1+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
grep (= 3.11-4),
groff-base (= 1.23.0-4),
gzip (= 1.12-1.1),
hdf5-helpers (= 1.10.10+repack-3.3),
hostname (= 3.23+nmu2),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2+rpi1),
libaec-dev (= 1.1.3-1),
libaec0 (= 1.1.3-1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14-20240221-2.1+rpi1),
libatomic1 (= 14-20240221-2.1+rpi1),
libattr1 (= 1:2.5.2-1),
libaudit-common (= 1:3.1.2-2),
libaudit1 (= 1:3.1.2-2),
libbinutils (= 2.41-6+rpi1+b1),
libblkid1 (= 2.40.1-4+rpi1),
libbrotli1 (= 1.1.0-2),
libbz2-1.0 (= 1.0.8-5.1),
libc-bin (= 2.38-8+rpi1),
libc-dev-bin (= 2.38-8+rpi1),
libc6 (= 2.38-8+rpi1),
libc6-dev (= 2.38-8+rpi1),
libcap-ng0 (= 0.8.5-1),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14-20240221-2.1+rpi1),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-4),
libcrypt1 (= 1:4.4.36-4),
libctf-nobfd0 (= 2.41-6+rpi1+b1),
libctf0 (= 2.41-6+rpi1+b1),
libcurl4-openssl-dev (= 8.8.0-1),
libcurl4t64 (= 8.8.0-1),
libdb5.3t64 (= 5.3.28+dfsg2-7),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.15.3),
libdpkg-perl (= 1.22.6+rpi1),
libelf1t64 (= 0.191-1+rpi1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-12-dev (= 12.3.0-14+rpi1),
libgcc-13-dev (= 13.2.0-16.1+rpi1),
libgcc-s1 (= 14-20240221-2.1+rpi1),
libgcrypt20 (= 1.10.3-3),
libgdbm-compat4t64 (= 1.23-5.1+b1),
libgdbm6t64 (= 1.23-5.1+b1),
libgfortran5 (= 14-20240221-2.1+rpi1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30t64 (= 3.8.5-4),
libgomp1 (= 14-20240221-2.1+rpi1),
libgpg-error0 (= 1.49-2),
libgssapi-krb5-2 (= 1.20.1-6+b4),
libhdf5-103-1t64 (= 1.10.10+repack-3.3),
libhdf5-cpp-103-1t64 (= 1.10.10+repack-3.3),
libhdf5-dev (= 1.10.10+repack-3.3),
libhdf5-fortran-102t64 (= 1.10.10+repack-3.3),
libhdf5-hl-100t64 (= 1.10.10+repack-3.3),
libhdf5-hl-cpp-100t64 (= 1.10.10+repack-3.3),
libhdf5-hl-fortran-100t64 (= 1.10.10+repack-3.3),
libhogweed6t64 (= 3.9.1-2.2),
libicu72 (= 72.1-4+b1),
libidn2-0 (= 2.3.7-2),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjpeg-dev (= 1:2.1.5-3),
libjpeg62-turbo (= 1:2.1.5-3),
libjpeg62-turbo-dev (= 1:2.1.5-3),
libk5crypto3 (= 1.20.1-6+b4),
libkeyutils1 (= 1.6.3-3),
libkrb5-3 (= 1.20.1-6+b4),
libkrb5support0 (= 1.20.1-6+b4),
libldap-2.5-0 (= 2.5.17+dfsg-1+rpi1),
liblz4-1 (= 1.9.4-2+rpi1),
liblzma5 (= 5.6.1+really5.4.5-1),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.1-4+rpi1),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libnettle8t64 (= 3.9.1-2.2),
libnghttp2-14 (= 1.61.0-1+b2),
libp11-kit0 (= 0.25.3-5),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.38t64 (= 5.38.2-4),
libpipeline1 (= 1.5.7-2),
libpsl5t64 (= 0.21.2-1.1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
libsasl2-2 (= 2.1.28+dfsg1-6),
libsasl2-modules-db (= 2.1.28+dfsg1-6),
libseccomp2 (= 2.5.5-1+rpi1),
libselinux1 (= 3.5-2+b2),
libsframe1 (= 2.41-6+rpi1+b1),
libsmartcols1 (= 2.40.1-4+rpi1),
libssh2-1t64 (= 1.11.0-4.1+rpi1),
libssl-dev (= 3.2.1-3),
libssl3t64 (= 3.2.1-3),
libstdc++-13-dev (= 13.2.0-16.1+rpi1),
libstdc++6 (= 14-20240221-2.1+rpi1),
libsystemd0 (= 255.3-1+rpi1+b1),
libsz2 (= 1.1.3-1),
libtasn1-6 (= 4.19.0-3+b2),
libtinfo6 (= 6.5-2),
libtool (= 2.4.7-7),
libubsan1 (= 14-20240221-2.1+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 255.3-1+rpi1+b1),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.1-4+rpi1),
libxml2 (= 2.9.14+dfsg-1.3+b4),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1+b1),
login (= 1:4.13+dfsg1-4),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.1-1),
mawk (= 1.3.4.20240123-1),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
patch (= 2.7.6-7),
perl (= 5.38.2-4),
perl-base (= 5.38.2-4),
perl-modules-5.38 (= 5.38.2-4),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.22),
sysvinit-utils (= 3.09-1),
tar (= 1.35+dfsg-3),
usr-is-merged (= 39),
util-linux (= 2.40.1-4+rpi1),
xz-utils (= 5.6.1+really5.4.5-1),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1717835939"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
dextractor-dbgsym_1.0-6+b1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 237280 bytes: control archive=804 bytes.
556 bytes, 12 lines control
620 bytes, 6 lines md5sums
Package: dextractor-dbgsym
Source: dextractor (1.0-6)
Version: 1.0-6+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 299
Depends: dextractor (= 1.0-6+b1)
Section: debug
Priority: optional
Description: debug symbols for dextractor
Build-Ids: 0b5c01a2fb40af95ce5f4b3f34fdfcf3dec638ed 8c6d1872c9101510b8f8d67efef2493782fe6a62 9e4863e9911ffed2b6ce26dbcb6bb6eb5e2623a8 db44fe64179676283d49747e8a3734d1de124469 f93e907107cc3f4a8c1d2b57bb360e60031bd582
drwxr-xr-x root/root 0 2024-06-08 08:38 ./
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/.build-id/0b/
-rw-r--r-- root/root 62940 2024-06-08 08:38 ./usr/lib/debug/.build-id/0b/5c01a2fb40af95ce5f4b3f34fdfcf3dec638ed.debug
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/.build-id/8c/
-rw-r--r-- root/root 54804 2024-06-08 08:38 ./usr/lib/debug/.build-id/8c/6d1872c9101510b8f8d67efef2493782fe6a62.debug
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/.build-id/9e/
-rw-r--r-- root/root 54424 2024-06-08 08:38 ./usr/lib/debug/.build-id/9e/4863e9911ffed2b6ce26dbcb6bb6eb5e2623a8.debug
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/.build-id/db/
-rw-r--r-- root/root 54064 2024-06-08 08:38 ./usr/lib/debug/.build-id/db/44fe64179676283d49747e8a3734d1de124469.debug
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/.build-id/f9/
-rw-r--r-- root/root 54500 2024-06-08 08:38 ./usr/lib/debug/.build-id/f9/3e907107cc3f4a8c1d2b57bb360e60031bd582.debug
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 5324 2024-06-08 08:38 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/dextractor.debug
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/share/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-06-08 08:38 ./usr/share/doc/dextractor-dbgsym -> dextractor
dextractor_1.0-6+b1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 38364 bytes: control archive=1256 bytes.
1250 bytes, 27 lines control
807 bytes, 13 lines md5sums
Package: dextractor
Source: dextractor (1.0-6)
Version: 1.0-6+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 237
Depends: libc6 (>= 2.34), libhdf5-103-1t64
Section: science
Priority: optional
Homepage: https://github.com/thegenemyers/DEXTRACTOR
Description: (d)extractor and compression command library
Dextractor commands allow one to pull exactly and only the
information needed for assembly and reconstruction from the source HDF5
files produced by the PacBio RS II sequencer, or from the source BAM
files produced by the PacBio Sequel sequencer.
.
For each of the three extracted file types -- fasta, quiva, and
arrow -- the library contains commands to compress the given file
type, and to decompress it, which is a reversible process delivering
the original uncompressed file. The compressed .fasta files, with the
extension .dexta, consume 1/4 byte per base. The compressed .quiva
files, with the extension .dexqv, consume 1.5 bytes per base on
average, and the compressed .arrow files, with the extension .dexar,
consume 1/4 byte per base
.
For more information, please view the available documentation at
https://github.com/thegenemyers/DEXTRACTOR
drwxr-xr-x root/root 0 2024-06-08 08:38 ./
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/bin/
-rwxr-xr-x root/root 42736 2024-06-08 08:38 ./usr/bin/dexqv
-rwxr-xr-x root/root 42732 2024-06-08 08:38 ./usr/bin/dexta
-rwxr-xr-x root/root 50976 2024-06-08 08:38 ./usr/bin/dextract
-rwxr-xr-x root/root 42732 2024-06-08 08:38 ./usr/bin/undexqv
-rwxr-xr-x root/root 42732 2024-06-08 08:38 ./usr/bin/undexta
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/share/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/share/doc/dextractor/
-rw-r--r-- root/root 217 2024-06-08 08:38 ./usr/share/doc/dextractor/changelog.Debian.armhf.gz
-rw-r--r-- root/root 632 2024-06-08 08:38 ./usr/share/doc/dextractor/changelog.Debian.gz
-rw-r--r-- root/root 1688 2022-11-03 11:49 ./usr/share/doc/dextractor/copyright
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/share/man/
drwxr-xr-x root/root 0 2024-06-08 08:38 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2024-06-08 08:38 ./usr/share/man/man1/dexqv.1.gz
-rw-r--r-- root/root 804 2024-06-08 08:38 ./usr/share/man/man1/dexta.1.gz
-rw-r--r-- root/root 1102 2024-06-08 08:38 ./usr/share/man/man1/dextract.1.gz
-rw-r--r-- root/root 414 2024-06-08 08:38 ./usr/share/man/man1/undexqv.1.gz
-rw-r--r-- root/root 384 2024-06-08 08:38 ./usr/share/man/man1/undexta.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 2788
Build-Time: 10
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 9
Job: dextractor_1.0-6
Machine Architecture: arm64
Package: dextractor
Package-Time: 28
Source-Version: 1.0-6
Space: 2788
Status: successful
Version: 1.0-6+b1
--------------------------------------------------------------------------------
Finished at 2024-06-08T08:39:09Z
Build needed 00:00:28, 2788k disk space