dextractor →
1.0-5 →
armhf → 2021-10-12 06:37:57
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| dextractor 1.0-5 (armhf) Tue, 12 Oct 2021 06:29:20 +0000 |
+==============================================================================+
Package: dextractor
Version: 1.0-5
Source Version: 1.0-5
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-cd12ec43-f69a-485a-93e1-3a2e8a5f62d4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 25s (1014 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'dextractor' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/dextractor.git
Please use:
git clone https://salsa.debian.org/med-team/dextractor.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 45.3 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main dextractor 1.0-5 (dsc) [1965 B]
Get:2 http://172.17.0.1/private bookworm-staging/main dextractor 1.0-5 (tar) [37.8 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main dextractor 1.0-5 (diff) [5484 B]
Fetched 45.3 kB in 0s (321 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/dextractor-26DfWa/dextractor-1.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/dextractor-26DfWa' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-u5ezgg/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-u5ezgg/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-u5ezgg/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2827 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (21.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libhdf5-dev
Filtered Build-Depends: debhelper-compat (= 13), libhdf5-dev
dpkg-deb: building package 'sbuild-build-depends-dextractor-dummy' in '/<<BUILDDIR>>/resolver-u5ezgg/apt_archive/sbuild-build-depends-dextractor-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-dextractor-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ Sources [501 B]
Get:5 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ Packages [581 B]
Fetched 2415 B in 1s (3134 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install dextractor build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gcc-11-base gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libasan6 libatomic1 libcc1-0 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgcc-s1 libgfortran5 libgomp1
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libstdc++6 libsub-override-perl libsz2 libtool
libubsan1 libuchardet0 libxml2 m4 man-db po-debconf sensible-utils
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libhdf5-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libgfortran5 libhdf5-103-1
libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100
libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4
man-db po-debconf sbuild-build-depends-dextractor-dummy sensible-utils
zlib1g-dev
The following packages will be upgraded:
gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6
libubsan1
8 upgraded, 48 newly installed, 0 to remove and 14 not upgraded.
Need to get 25.9 MB of archives.
After this operation, 80.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-u5ezgg/apt_archive ./ sbuild-build-depends-dextractor-dummy 0.invalid.0 [868 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-7+rpi1 [1944 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-7+rpi1 [797 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-7+rpi1 [88.1 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-7+rpi1 [205 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-7+rpi1 [36.2 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-7+rpi1 [37.7 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-7+rpi1 [8188 B]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-7+rpi1 [465 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf hdf5-helpers armhf 1.10.7+repack-1 [42.7 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libaec0 armhf 1.0.6-1 [19.3 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libsz2 armhf 1.0.6-1 [7452 B]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libaec-dev armhf 1.0.6-1 [17.6 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-7+rpi1 [235 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-103-1 armhf 1.10.7+repack-1 [1232 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.7+repack-1 [132 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-fortran-102 armhf 1.10.7+repack-1 [96.7 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-100 armhf 1.10.7+repack-1 [81.8 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.7+repack-1 [53.5 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.7+repack-1 [39.8 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libhdf5-dev armhf 1.10.7+repack-1 [2195 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../libgomp1_11.2.0-7+rpi1_armhf.deb ...
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Setting up gcc-11-base:armhf (11.2.0-7+rpi1) ...
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Setting up libgcc-s1:armhf (11.2.0-7+rpi1) ...
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Setting up libstdc++6:armhf (11.2.0-7+rpi1) ...
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Unpacking sbuild-build-depends-dextractor-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up bsdextrautils (2.37.2-1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up hdf5-helpers (1.10.7+repack-1) ...
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up libgomp1:armhf (11.2.0-7+rpi1) ...
Setting up libaec0:armhf (1.0.6-1) ...
Setting up libasan6:armhf (11.2.0-7+rpi1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.0.6-4) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libatomic1:armhf (11.2.0-7+rpi1) ...
Setting up autopoint (0.21-4) ...
Setting up libgfortran5:armhf (11.2.0-7+rpi1) ...
Setting up libubsan1:armhf (11.2.0-7+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libcc1-0:armhf (11.2.0-7+rpi1) ...
Setting up libsz2:armhf (1.0.6-1) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up libaec-dev:armhf (1.0.6-1) ...
Setting up libjpeg-dev:armhf (1:2.0.6-4) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up libhdf5-103-1:armhf (1.10.7+repack-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.7+repack-1) ...
Setting up libhdf5-hl-100:armhf (1.10.7+repack-1) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.7+repack-1) ...
Setting up libhdf5-fortran-102:armhf (1.10.7+repack-1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.7+repack-1) ...
Setting up debhelper (13.5.2) ...
Setting up libhdf5-dev (1.10.7+repack-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up sbuild-build-depends-dextractor-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-7+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hdf5-helpers_1.10.7+repack-1 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-7+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-7+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-7+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgfortran5_11.2.0-7+rpi1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-7+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhdf5-103-1_1.10.7+repack-1 libhdf5-cpp-103-1_1.10.7+repack-1 libhdf5-dev_1.10.7+repack-1 libhdf5-fortran-102_1.10.7+repack-1 libhdf5-hl-100_1.10.7+repack-1 libhdf5-hl-cpp-100_1.10.7+repack-1 libhdf5-hl-fortran-100_1.10.7+repack-1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-7+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libsz2_1.0.6-1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dextractor-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.jKNlnixp/trustedkeys.kbx': General error
gpgv: Signature made Thu Oct 7 08:21:37 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./dextractor_1.0-5.dsc
dpkg-source: info: extracting dextractor in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking dextractor_1.0.orig.tar.gz
dpkg-source: info: unpacking dextractor_1.0-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_system_packaged_libhdf5-dev.patch
dpkg-source: info: applying cross.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-cd12ec43-f69a-485a-93e1-3a2e8a5f62d4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package dextractor
dpkg-buildpackage: info: source version 1.0-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f dextract dexta undexta dexqv undexqv dextract.tar.gz
rm -fr *.dSYM
rm -f dextract.tar.gz
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -rf bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- ARGS="-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial"
make -j4 "INSTALL=install --strip-program=true" "ARGS=-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
#gcc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial/ -L/usr/lib/armv7l-linux-gnu/hdf5/serial/ -o dextract dextract.c DB.c QV.c -lhdf5
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o dextract dextract.c DB.c QV.c -lhdf5
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexta dexta.c DB.c QV.c
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexta undexta.c DB.c QV.c
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexqv dexqv.c DB.c QV.c
dextract.c: In function ‘main’:
dextract.c:399:30: warning: ‘b.delLimit’ may be used uninitialized in this function [-Wmaybe-uninitialized]
399 | { if (delQV[a] == d)
| ^
dextract.c:488:11: note: ‘b.delLimit’ was declared here
488 | BaxData b;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexqv undexqv.c DB.c QV.c
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/dextractor/ -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/dextractor AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir bin/
cp dextract dexta undexta dexqv undexqv bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'dextractor' in '../dextractor_1.0-5_armhf.deb'.
dpkg-deb: building package 'dextractor-dbgsym' in '../dextractor-dbgsym_1.0-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../dextractor_1.0-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-12T06:37:50Z
Finished
--------
I: Built successfully
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| Post Build Chroot |
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+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
dextractor_1.0-5_armhf.changes:
-------------------------------
Format: 1.8
Date: Thu, 07 Oct 2021 09:55:42 +0200
Source: dextractor
Binary: dextractor dextractor-dbgsym
Architecture: armhf
Version: 1.0-5
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
dextractor - (d)extractor and compression command library
Changes:
dextractor (1.0-5) unstable; urgency=medium
.
* Team upload.
* Fix watchfile to detect new versions on github
* Standards-Version: 4.6.0 (routine-update)
Checksums-Sha1:
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024afe55de0aa3b5de1415d55db87fe065f8e9dc 5399 dextractor_1.0-5_armhf.buildinfo
1947513b1e31832f15afef44e9e7f56797039c00 38096 dextractor_1.0-5_armhf.deb
Checksums-Sha256:
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f5f23cd46ae52d575fc384308c56b2fb48387c21a0676a18b319ec8907f1b2d0 38096 dextractor_1.0-5_armhf.deb
Files:
445f36e91dd03a631065822488a53414 244344 debug optional dextractor-dbgsym_1.0-5_armhf.deb
b66acfda44c11bfd5033ff7eaac84f4f 5399 science optional dextractor_1.0-5_armhf.buildinfo
d43eb1f10fce011a8db6fbf02bf093f8 38096 science optional dextractor_1.0-5_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
dextractor-dbgsym_1.0-5_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 244344 bytes: control archive=808 bytes.
542 bytes, 12 lines control
620 bytes, 6 lines md5sums
Package: dextractor-dbgsym
Source: dextractor
Version: 1.0-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 309
Depends: dextractor (= 1.0-5)
Section: debug
Priority: optional
Description: debug symbols for dextractor
Build-Ids: 324a25b4891570258c72354ca10c4e2d3f9d33da 5164b12caa285cb808f0cf0d00572c80b6ec97ed 66dc17ad03106a3ed0a6db8f94920692c9e45663 c729e1e8b6a7276aa572d6d83adc57ff62353f38 f98e9a1a3186af62db88e50fcb4aa2504cbe1e87
drwxr-xr-x root/root 0 2021-10-07 07:55 ./
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/.build-id/32/
-rw-r--r-- root/root 65248 2021-10-07 07:55 ./usr/lib/debug/.build-id/32/4a25b4891570258c72354ca10c4e2d3f9d33da.debug
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/.build-id/51/
-rw-r--r-- root/root 57204 2021-10-07 07:55 ./usr/lib/debug/.build-id/51/64b12caa285cb808f0cf0d00572c80b6ec97ed.debug
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/.build-id/66/
-rw-r--r-- root/root 56600 2021-10-07 07:55 ./usr/lib/debug/.build-id/66/dc17ad03106a3ed0a6db8f94920692c9e45663.debug
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/.build-id/c7/
-rw-r--r-- root/root 57044 2021-10-07 07:55 ./usr/lib/debug/.build-id/c7/29e1e8b6a7276aa572d6d83adc57ff62353f38.debug
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/.build-id/f9/
-rw-r--r-- root/root 57004 2021-10-07 07:55 ./usr/lib/debug/.build-id/f9/8e9a1a3186af62db88e50fcb4aa2504cbe1e87.debug
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 4876 2021-10-07 07:55 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/dextractor.debug
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/share/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-07 07:55 ./usr/share/doc/dextractor-dbgsym -> dextractor
dextractor_1.0-5_armhf.deb
--------------------------
new Debian package, version 2.0.
size 38096 bytes: control archive=1216 bytes.
1216 bytes, 26 lines control
722 bytes, 12 lines md5sums
Package: dextractor
Version: 1.0-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 236
Depends: libc6 (>= 2.7), libhdf5-103-1
Section: science
Priority: optional
Homepage: https://github.com/thegenemyers/DEXTRACTOR
Description: (d)extractor and compression command library
Dextractor commands allow one to pull exactly and only the
information needed for assembly and reconstruction from the source HDF5
files produced by the PacBio RS II sequencer, or from the source BAM
files produced by the PacBio Sequel sequencer.
.
For each of the three extracted file types -- fasta, quiva, and
arrow -- the library contains commands to compress the given file
type, and to decompress it, which is a reversible process delivering
the original uncompressed file. The compressed .fasta files, with the
extension .dexta, consume 1/4 byte per base. The compressed .quiva
files, with the extension .dexqv, consume 1.5 bytes per base on
average, and the compressed .arrow files, with the extension .dexar,
consume 1/4 byte per base
.
For more information, please view the available documentation at
https://github.com/thegenemyers/DEXTRACTOR
drwxr-xr-x root/root 0 2021-10-07 07:55 ./
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/bin/
-rwxr-xr-x root/root 42732 2021-10-07 07:55 ./usr/bin/dexqv
-rwxr-xr-x root/root 42728 2021-10-07 07:55 ./usr/bin/dexta
-rwxr-xr-x root/root 50972 2021-10-07 07:55 ./usr/bin/dextract
-rwxr-xr-x root/root 42728 2021-10-07 07:55 ./usr/bin/undexqv
-rwxr-xr-x root/root 42728 2021-10-07 07:55 ./usr/bin/undexta
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/share/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/share/doc/dextractor/
-rw-r--r-- root/root 586 2021-10-07 07:55 ./usr/share/doc/dextractor/changelog.Debian.gz
-rw-r--r-- root/root 1688 2021-10-07 07:55 ./usr/share/doc/dextractor/copyright
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/share/man/
drwxr-xr-x root/root 0 2021-10-07 07:55 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2021-10-07 07:55 ./usr/share/man/man1/dexqv.1.gz
-rw-r--r-- root/root 804 2021-10-07 07:55 ./usr/share/man/man1/dexta.1.gz
-rw-r--r-- root/root 1102 2021-10-07 07:55 ./usr/share/man/man1/dextract.1.gz
-rw-r--r-- root/root 414 2021-10-07 07:55 ./usr/share/man/man1/undexqv.1.gz
-rw-r--r-- root/root 384 2021-10-07 07:55 ./usr/share/man/man1/undexta.1.gz
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 2976
Build-Time: 77
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 382
Job: dextractor_1.0-5
Machine Architecture: armhf
Package: dextractor
Package-Time: 510
Source-Version: 1.0-5
Space: 2976
Status: successful
Version: 1.0-5
--------------------------------------------------------------------------------
Finished at 2021-10-12T06:37:50Z
Build needed 00:08:30, 2976k disc space