dextractor →
1.0-4 →
armhf → 2021-03-01 05:53:36
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| dextractor 1.0-4 (armhf) Mon, 01 Mar 2021 05:47:27 +0000 |
+==============================================================================+
Package: dextractor
Version: 1.0-4
Source Version: 1.0-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-9bcefa7c-8977-4498-a211-5e6661257da4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.2 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.2 MB]
Fetched 25.4 MB in 27s (960 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'dextractor' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/dextractor.git
Please use:
git clone https://salsa.debian.org/med-team/dextractor.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 45.3 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main dextractor 1.0-4 (dsc) [1969 B]
Get:2 http://172.17.0.1/private bullseye-staging/main dextractor 1.0-4 (tar) [37.8 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main dextractor 1.0-4 (diff) [5468 B]
Fetched 45.3 kB in 0s (247 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/dextractor-U7r0oa/dextractor-1.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/dextractor-U7r0oa' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-VIGvXd/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-VIGvXd/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-VIGvXd/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2901 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libnss-nis libnss-nisplus netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 47 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
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Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libhdf5-dev
Filtered Build-Depends: debhelper-compat (= 13), libhdf5-dev
dpkg-deb: building package 'sbuild-build-depends-dextractor-dummy' in '/<<BUILDDIR>>/resolver-VIGvXd/apt_archive/sbuild-build-depends-dextractor-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-dextractor-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ Sources [501 B]
Get:5 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ Packages [579 B]
Fetched 2413 B in 1s (3314 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install dextractor build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libnss-nis libnss-nisplus netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran5
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0
libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libhdf5-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libgfortran5
libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0
libxml2 m4 man-db po-debconf sbuild-build-depends-dextractor-dummy
zlib1g-dev
0 upgraded, 46 newly installed, 0 to remove and 47 not upgraded.
Need to get 22.0 MB of archives.
After this operation, 80.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-VIGvXd/apt_archive ./ sbuild-build-depends-dextractor-dummy 0.invalid.0 [864 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.4-1 [1307 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.3 [189 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.183-1 [161 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210201-1 [164 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.3 [1011 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.1-6+rpi1 [232 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.5-2 [120 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.5-2 [239 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev armhf 1:2.0.5-2 [66.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
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Unpacking libjpeg-dev:armhf (1:2.0.5-2) ...
Selecting previously unselected package libhdf5-dev.
Preparing to unpack .../44-libhdf5-dev_1.10.6+repack-2_armhf.deb ...
Unpacking libhdf5-dev (1.10.6+repack-2) ...
Selecting previously unselected package sbuild-build-depends-dextractor-dummy.
Preparing to unpack .../45-sbuild-build-depends-dextractor-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-dextractor-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up hdf5-helpers (1.10.6+repack-2) ...
Setting up libicu67:armhf (67.1-6) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.3.3) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up libaec0:armhf (1.0.4-1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libjpeg62-turbo:armhf (1:2.0.5-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.0.5-2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up libgfortran5:armhf (10.2.1-6+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.183-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libsz2:armhf (1.0.4-1) ...
Setting up libfile-stripnondeterminism-perl (1.11.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up libaec-dev:armhf (1.0.4-1) ...
Setting up libjpeg-dev:armhf (1:2.0.5-2) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.11.0-1) ...
Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ...
Setting up dwz (0.13+20210201-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.6+repack-2) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ...
Setting up libhdf5-fortran-102:armhf (1.10.6+repack-2) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-2) ...
Setting up debhelper (13.3.3) ...
Setting up libhdf5-dev (1.10.6+repack-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up sbuild-build-depends-dextractor-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-9+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-7+rpi1 dpkg-dev_1.20.7.1+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-9+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.9-1+rpi1
Package versions: adduser_3.118 apt_2.1.18 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-2 binutils_2.35.1-7+rpi1 binutils-arm-linux-gnueabihf_2.35.1-7+rpi1 binutils-common_2.35.1-7+rpi1 bsdextrautils_2.36.1-6 bsdutils_1:2.36.1-6 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.3 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-5 dirmngr_2.2.20-1 dpkg_1.20.7.1+rpi1 dpkg-dev_1.20.7.1+rpi1 dwz_0.13+20210201-1 e2fsprogs_1.45.7-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-6 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-6+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-2 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 krb5-locales_1.18.3-4 libacl1_2.2.53-10 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg6.0_2.1.18 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.1-7+rpi1 libblkid1_2.36.1-6 libbz2-1.0_1.0.8-4 libc-bin_2.31-9+rpi1 libc-dev-bin_2.31-9+rpi1 libc6_2.31-9+rpi1 libc6-dev_2.31-9+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.45.7-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-7+rpi1 libctf0_2.35.1-7+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.256 libdebhelper-perl_13.3.3 libdpkg-perl_1.20.7.1+rpi1 libelf1_0.183-1 libext2fs2_1.45.7-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-6 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.11.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_10.2.1-6+rpi1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.6-2 libicu67_67.1-6 libidn2-0_2.3.0-5 libisl23_0.23-1 libjpeg-dev_1:2.0.5-2 libjpeg62-turbo_1:2.0.5-2 libjpeg62-turbo-dev_1:2.0.5-2 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-1 libldap-common_2.4.57+dfsg-1 liblz4-1_1.9.3-1+rpi1 liblzma5_5.2.5-1.0 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-6 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-2 libpam-modules-bin_1.4.0-2 libpam-runtime_1.4.0-2 libpam0g_1.4.0-2 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-2 libpipeline1_1.5.3-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-6 libsqlite3-0_3.34.1-1 libss2_1.45.7-1 libssl1.1_1.1.1i-3 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.2-5+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.2-5+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-6 libxml2_2.9.10+dfsg-6.3 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-1 linux-libc-dev_5.10.9-1+rpi1 login_1:4.8.1-1 logsave_1.45.7-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4 man-db_2.9.4-1 mawk_1.3.4.20200120-2 mount_2.36.1-6 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-2 perl-base_5.32.1-2 perl-modules-5.32_5.32.1-2 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dextractor-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2021a-1 util-linux_2.36.1-6 xz-utils_5.2.5-1.0 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.39sB2LRf/trustedkeys.kbx': General error
gpgv: Signature made Thu Feb 18 17:54:14 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./dextractor_1.0-4.dsc
dpkg-source: info: extracting dextractor in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking dextractor_1.0.orig.tar.gz
dpkg-source: info: unpacking dextractor_1.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_system_packaged_libhdf5-dev.patch
dpkg-source: info: applying cross.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-9bcefa7c-8977-4498-a211-5e6661257da4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package dextractor
dpkg-buildpackage: info: source version 1.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f dextract dexta undexta dexqv undexqv dextract.tar.gz
rm -fr *.dSYM
rm -f dextract.tar.gz
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -rf bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- ARGS="-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial"
make -j4 "INSTALL=install --strip-program=true" "ARGS=-I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
#gcc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial/ -L/usr/lib/armv7l-linux-gnu/hdf5/serial/ -o dextract dextract.c DB.c QV.c -lhdf5
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexta dexta.c DB.c QV.c
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -I/usr/include/hdf5/serial -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -o dextract dextract.c DB.c QV.c -lhdf5
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexta undexta.c DB.c QV.c
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o dexqv dexqv.c DB.c QV.c
dextract.c: In function ‘main’:
dextract.c:399:30: warning: ‘b.delLimit’ may be used uninitialized in this function [-Wmaybe-uninitialized]
399 | { if (delQV[a] == d)
| ^
dextract.c:488:11: note: ‘b.delLimit’ was declared here
488 | BaxData b;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
cc -g -O3 -Wall -Wextra -fno-strict-aliasing -o undexqv undexqv.c DB.c QV.c
QV.c: In function ‘Build_Table’:
QV.c:164:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
164 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function ‘Huffman’:
QV.c:211:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
211 | node[value].lft = (HTree *) (uint64) i;
| ^
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/dextractor AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir bin/
cp dextract dexta undexta dexqv undexqv bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'dextractor' in '../dextractor_1.0-4_armhf.deb'.
dpkg-deb: building package 'dextractor-dbgsym' in '../dextractor-dbgsym_1.0-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../dextractor_1.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-03-01T05:53:26Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
dextractor_1.0-4_armhf.changes:
-------------------------------
Format: 1.8
Date: Thu, 18 Feb 2021 17:32:19 +0000
Source: dextractor
Binary: dextractor dextractor-dbgsym
Architecture: armhf
Version: 1.0-4
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
dextractor - (d)extractor and compression command library
Changes:
dextractor (1.0-4) unstable; urgency=medium
.
* Team Upload.
* Do not hardcode architecture compiler name, use $(CC) instead
* d/rules: Do not hardcode $(MAKE)
Checksums-Sha1:
65bee3ff6507e93d32723ae86d0411120930d526 242364 dextractor-dbgsym_1.0-4_armhf.deb
44cd2ec465c2292999f9c4fb98eba68ed0de79ec 5372 dextractor_1.0-4_armhf.buildinfo
7ff9539c6eb383fcaed5bc247ff6557034663438 38048 dextractor_1.0-4_armhf.deb
Checksums-Sha256:
07835caf52196c1ab3aa0d0cd644bd8da53d2e8425a37ec80f30e85e46c8464e 242364 dextractor-dbgsym_1.0-4_armhf.deb
69cc751a940a70bd8c4a274d1263f497db3d157cfde32b97052839e0f6051cfb 5372 dextractor_1.0-4_armhf.buildinfo
4ea483355020a4dfd5fa89dcb193d6a358852a0ae40216d48c0d9e7a36398239 38048 dextractor_1.0-4_armhf.deb
Files:
ba353eb2045b3c94f043a0044843fe6a 242364 debug optional dextractor-dbgsym_1.0-4_armhf.deb
52ad28ecc4f9c7efde85f38b28a4dc1e 5372 science optional dextractor_1.0-4_armhf.buildinfo
5ab2a3e7f3be54ac8cfe70b4f51c29c5 38048 science optional dextractor_1.0-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
dextractor-dbgsym_1.0-4_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 242364 bytes: control archive=804 bytes.
542 bytes, 12 lines control
620 bytes, 6 lines md5sums
Package: dextractor-dbgsym
Source: dextractor
Version: 1.0-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 310
Depends: dextractor (= 1.0-4)
Section: debug
Priority: optional
Description: debug symbols for dextractor
Build-Ids: 31f18f26a3fe3e79174fe3e75f5a9c3ac4ee61f4 40414d76c79aad1f4fc34283ccebdeea1aef4f78 7254adb6ceee8d6bc683cbd77d703bf140ecbe82 b426f9157f694aeb49b613fe5ad2c980f5839c2e e5a6408740e83305551ff1ed497c25cb1b11956e
drwxr-xr-x root/root 0 2021-02-18 17:32 ./
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/.build-id/31/
-rw-r--r-- root/root 57164 2021-02-18 17:32 ./usr/lib/debug/.build-id/31/f18f26a3fe3e79174fe3e75f5a9c3ac4ee61f4.debug
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/.build-id/40/
-rw-r--r-- root/root 57380 2021-02-18 17:32 ./usr/lib/debug/.build-id/40/414d76c79aad1f4fc34283ccebdeea1aef4f78.debug
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/.build-id/72/
-rw-r--r-- root/root 56804 2021-02-18 17:32 ./usr/lib/debug/.build-id/72/54adb6ceee8d6bc683cbd77d703bf140ecbe82.debug
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/.build-id/b4/
-rw-r--r-- root/root 57220 2021-02-18 17:32 ./usr/lib/debug/.build-id/b4/26f9157f694aeb49b613fe5ad2c980f5839c2e.debug
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/.build-id/e5/
-rw-r--r-- root/root 65416 2021-02-18 17:32 ./usr/lib/debug/.build-id/e5/a6408740e83305551ff1ed497c25cb1b11956e.debug
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 4884 2021-02-18 17:32 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/dextractor.debug
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/share/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-02-18 17:32 ./usr/share/doc/dextractor-dbgsym -> dextractor
dextractor_1.0-4_armhf.deb
--------------------------
new Debian package, version 2.0.
size 38048 bytes: control archive=1216 bytes.
1216 bytes, 26 lines control
722 bytes, 12 lines md5sums
Package: dextractor
Version: 1.0-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 236
Depends: libc6 (>= 2.7), libhdf5-103-1
Section: science
Priority: optional
Homepage: https://github.com/thegenemyers/DEXTRACTOR
Description: (d)extractor and compression command library
Dextractor commands allow one to pull exactly and only the
information needed for assembly and reconstruction from the source HDF5
files produced by the PacBio RS II sequencer, or from the source BAM
files produced by the PacBio Sequel sequencer.
.
For each of the three extracted file types -- fasta, quiva, and
arrow -- the library contains commands to compress the given file
type, and to decompress it, which is a reversible process delivering
the original uncompressed file. The compressed .fasta files, with the
extension .dexta, consume 1/4 byte per base. The compressed .quiva
files, with the extension .dexqv, consume 1.5 bytes per base on
average, and the compressed .arrow files, with the extension .dexar,
consume 1/4 byte per base
.
For more information, please view the available documentation at
https://github.com/thegenemyers/DEXTRACTOR
drwxr-xr-x root/root 0 2021-02-18 17:32 ./
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/bin/
-rwxr-xr-x root/root 42732 2021-02-18 17:32 ./usr/bin/dexqv
-rwxr-xr-x root/root 42728 2021-02-18 17:32 ./usr/bin/dexta
-rwxr-xr-x root/root 50972 2021-02-18 17:32 ./usr/bin/dextract
-rwxr-xr-x root/root 42728 2021-02-18 17:32 ./usr/bin/undexqv
-rwxr-xr-x root/root 42728 2021-02-18 17:32 ./usr/bin/undexta
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/share/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/share/doc/dextractor/
-rw-r--r-- root/root 516 2021-02-18 17:32 ./usr/share/doc/dextractor/changelog.Debian.gz
-rw-r--r-- root/root 1688 2021-02-18 11:06 ./usr/share/doc/dextractor/copyright
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/share/man/
drwxr-xr-x root/root 0 2021-02-18 17:32 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2021-02-18 17:32 ./usr/share/man/man1/dexqv.1.gz
-rw-r--r-- root/root 804 2021-02-18 17:32 ./usr/share/man/man1/dexta.1.gz
-rw-r--r-- root/root 1102 2021-02-18 17:32 ./usr/share/man/man1/dextract.1.gz
-rw-r--r-- root/root 414 2021-02-18 17:32 ./usr/share/man/man1/undexqv.1.gz
-rw-r--r-- root/root 384 2021-02-18 17:32 ./usr/share/man/man1/undexta.1.gz
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 2980
Build-Time: 74
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 232
Job: dextractor_1.0-4
Machine Architecture: armhf
Package: dextractor
Package-Time: 359
Source-Version: 1.0-4
Space: 2980
Status: successful
Version: 1.0-4
--------------------------------------------------------------------------------
Finished at 2021-03-01T05:53:26Z
Build needed 00:05:59, 2980k disc space