density-fitness ā
1.0.8-2 ā
armhf ā 2023-01-07 14:05:42
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| density-fitness 1.0.8-2 (armhf) Sat, 07 Jan 2023 13:45:56 +0000 |
+==============================================================================+
Package: density-fitness
Version: 1.0.8-2
Source Version: 1.0.8-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-b90b3bde-4152-4d54-b5cf-9900a816fd6e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.9 MB in 11s (2553 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'density-fitness' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/density-fitness.git
Please use:
git clone https://salsa.debian.org/med-team/density-fitness.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 781 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main density-fitness 1.0.8-2 (dsc) [2224 B]
Get:2 http://172.17.4.1/private bookworm-staging/main density-fitness 1.0.8-2 (tar) [776 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main density-fitness 1.0.8-2 (diff) [3380 B]
Fetched 781 kB in 0s (7062 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/density-fitness-VnlUiQ/density-fitness-1.0.8' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/density-fitness-VnlUiQ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-j4mObe/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-j4mObe/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-j4mObe/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (8660 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (71.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12958 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 5.0.5-2~), libpdb-redo-dev (>= 3.0.4-1~), libzeep-dev, libmcfp-dev, zlib1g-dev, cmake, mrc
Filtered Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 5.0.5-2~), libpdb-redo-dev (>= 3.0.4-1~), libzeep-dev, libmcfp-dev, zlib1g-dev, cmake, mrc
dpkg-deb: building package 'sbuild-build-depends-density-fitness-dummy' in '/<<BUILDDIR>>/resolver-j4mObe/apt_archive/sbuild-build-depends-density-fitness-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-density-fitness-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ Sources [556 B]
Get:5 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ Packages [639 B]
Fetched 2528 B in 0s (12.3 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install density-fitness build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file
gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libarchive13 libboost-date-time-dev
libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex-dev libboost-regex1.74-dev
libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbrotli1 libbsd0 libccp4-data
libccp4-dev libccp4c0 libccp4f0 libcifpp-data libcifpp-dev libcifpp5
libclipper-dev libclipper2 libcurl4 libdebhelper-perl libelf1
libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1
libfile-stripnondeterminism-perl libgfortran5 libgsl-dev libgsl27
libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu-dev libicu72
libjsoncpp25 libmagic-mgc libmagic1 libmcfp-dev libmd0 libmmdb2-0
libmmdb2-dev libmunge2 libnewuoa-dev libnewuoa0 libnghttp2-14 libnl-3-200
libnl-route-3-200 libopenmpi3 libpciaccess0 libpdb-redo-dev libpdb-redo3
libpipeline1 libpkgconf3 libpmix2 libproc2-0 libpsl5 librdmacm1 librhash0
librtmp1 libssh2-1 libsub-override-perl libtool libuchardet0 libuv1 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0
libzeep-dev libzeep5.1 m4 man-db mrc ocl-icd-libopencl1 pkg-config pkgconf
pkgconf-bin po-debconf procps sfftw-dev sfftw2 zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build dh-make mpi-defaults-bin gettext-doc
libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-python1.74-dev libboost-random1.74-dev libboost-stacktrace1.74-dev
libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev
libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev
libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libclipper-doc
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc pciutils
libtool-doc gfortran | fortran95-compiler gcj-jdk libzeep-doc m4-doc
apparmor less www-browser opencl-icd libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl ibverbs-providers
publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file
gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libarchive13 libboost-date-time-dev
libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex-dev libboost-regex1.74-dev
libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbrotli1 libbsd0 libccp4-data
libccp4-dev libccp4c0 libccp4f0 libcifpp-data libcifpp-dev libcifpp5
libclipper-dev libclipper2 libcurl4 libdebhelper-perl libelf1
libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libfabric1
libfile-stripnondeterminism-perl libgfortran5 libgsl-dev libgsl27
libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu-dev libicu72
libjsoncpp25 libmagic-mgc libmagic1 libmcfp-dev libmd0 libmmdb2-0
libmmdb2-dev libmunge2 libnewuoa-dev libnewuoa0 libnghttp2-14 libnl-3-200
libnl-route-3-200 libopenmpi3 libpciaccess0 libpdb-redo-dev libpdb-redo3
libpipeline1 libpkgconf3 libpmix2 libproc2-0 libpsl5 librdmacm1 librhash0
librtmp1 libssh2-1 libsub-override-perl libtool libuchardet0 libuv1 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0
libzeep-dev libzeep5.1 m4 man-db mrc ocl-icd-libopencl1 pkg-config pkgconf
pkgconf-bin po-debconf procps sbuild-build-depends-density-fitness-dummy
sfftw-dev sfftw2 zlib1g-dev
0 upgraded, 118 newly installed, 0 to remove and 35 not upgraded.
Need to get 62.2 MB of archives.
After this operation, 389 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-j4mObe/apt_archive ./ sbuild-build-depends-density-fitness-dummy 0.invalid.0 [920 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libproc2-0 armhf 2:4.0.2-3 [53.6 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:4.0.2-3 [679 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.6.2-1 [293 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.87.0-1 [332 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-4 [66.7 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.2-1+rpi1 [125 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.25.1-1 [2026 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.25.1-1 [3859 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.4 [81.2 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-5+b1 [125 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-5+b1 [57.6 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libnl-3-200 armhf 3.7.0-0.2 [55.0 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libnl-route-3-200 armhf 3.7.0-0.2 [152 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libibverbs1 armhf 42.0-1 [53.7 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf librdmacm1 armhf 42.0-1 [60.3 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libfabric1 armhf 1.11.0-3 [310 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libhwloc15 armhf 2.9.0-1 [124 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libmunge2 armhf 0.5.14-6 [18.6 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libpciaccess0 armhf 0.17-2 [48.8 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.3-3 [292 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.3-3 [687 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libxnvctrl0 armhf 510.85.02-2 [26.6 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf ocl-icd-libopencl1 armhf 2.3.1-1 [40.3 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libhwloc-plugins armhf 2.9.0-1 [16.0 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libpmix2 armhf 4.2.2-1 [530 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libopenmpi3 armhf 4.1.4-3+rpi1 [1795 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf fftw2 armhf 2.1.5-6 [184 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf fftw-dev armhf 2.1.5-6 [212 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-18.1 [9509 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time1.74.0 armhf 1.74.0-18.1 [217 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libboost-serialization1.74.0 armhf 1.74.0-18.1 [296 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libboost-serialization1.74-dev armhf 1.74.0-18.1 [362 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time1.74-dev armhf 1.74.0-18.1 [226 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time-dev armhf 1.74.0.3+b4 [4604 B]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74.0 armhf 1.74.0-18.1 [306 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74-dev armhf 1.74.0-18.1 [345 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options-dev armhf 1.74.0.3+b4 [4616 B]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex1.74.0 armhf 1.74.0-18.1 [420 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex1.74-dev armhf 1.74.0-18.1 [525 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex-dev armhf 1.74.0.3+b4 [4876 B]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74.0 armhf 1.74.0-18.1 [218 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74-dev armhf 1.74.0-18.1 [219 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libboost-system-dev armhf 1.74.0.3+b4 [4744 B]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libccp4-data all 8.0.0-2 [62.3 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libccp4c0 armhf 8.0.0-2 [74.3 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-10+rpi1 [238 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libmmdb2-0 armhf 2.0.22-1 [269 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libccp4f0 armhf 8.0.0-2 [185 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libccp4-dev armhf 8.0.0-2 [42.8 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libcifpp-data all 5.0.5-6 [452 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libcifpp5 armhf 5.0.5-6 [669 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libcifpp-dev armhf 5.0.5-6 [85.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf sfftw2 armhf 2.1.5-6 [186 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libclipper2 armhf 2.1.20201109-1 [1069 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libmmdb2-dev armhf 2.0.22-1 [92.9 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf sfftw-dev armhf 2.1.5-6 [214 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libclipper-dev armhf 2.1.20201109-1 [82.6 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-3 [81.4 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libgsl27 armhf 2.7.1+dfsg-3 [758 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libgsl-dev armhf 2.7.1+dfsg-3 [958 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libmcfp-dev armhf 1.2.2-3 [15.4 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libnewuoa0 armhf 0.1.2-1 [15.7 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libnewuoa-dev armhf 0.1.2-1 [7504 B]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libpdb-redo3 armhf 3.0.4-2 [272 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libpdb-redo-dev armhf 3.0.4-2 [628 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-12 [31.0 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libzeep5.1 armhf 5.1.7-1 [496 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-12 [27.6 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-12 [25.6 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-12 [13.5 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libzeep-dev armhf 5.1.7-1 [78.8 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf mrc armhf 1.3.4-1 [39.1 kB]
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
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Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ...
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Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-5+b1) ...
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-2) ...
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Setting up libccp4-dev:armhf (8.0.0-2) ...
Setting up libtool (2.4.7-5) ...
Setting up libarchive13:armhf (3.6.2-1) ...
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Setting up libnl-route-3-200:armhf (3.7.0-0.2) ...
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Setting up groff-base (1.22.4-9) ...
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Setting up libboost-regex-dev:armhf (1.74.0.3+b4) ...
Setting up libibverbs1:armhf (42.0-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxnvctrl0:armhf (510.85.02-2) ...
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Setting up libboost-date-time-dev:armhf (1.74.0.3+b4) ...
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Setting up cmake (3.25.1-1) ...
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Setting up debhelper (13.11.4) ...
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Setting up libzeep-dev (5.1.7-1) ...
Setting up libfabric1:armhf (1.11.0-3) ...
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Setting up sfftw2 (2.1.5-6) ...
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Setting up libclipper2:armhf (2.1.20201109-1) ...
Setting up libpdb-redo3 (3.0.4-2) ...
Setting up fftw-dev (2.1.5-6) ...
Setting up libclipper-dev:armhf (2.1.20201109-1) ...
Setting up libpdb-redo-dev (3.0.4-2) ...
Setting up sbuild-build-depends-density-fitness-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.39.50.20221208-5+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-10+rpi1 gcc-12_12.2.0-10+rpi1 libc6-dev_2.36-6+rpi1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 linux-libc-dev_6.0.12-1+rpi1
Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2-2 binutils_2.39.50.20221208-5+rpi1 binutils-arm-linux-gnueabihf_2.39.50.20221208-5+rpi1 binutils-common_2.39.50.20221208-5+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-10+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.40-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 fftw-dev_2.1.5-6 fftw2_2.1.5-6 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-10+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-10+rpi1 gcc-12-base_12.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 icu-devtools_72.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1 libasan8_12.2.0-10+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-10+rpi1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39.50.20221208-5+rpi1 libblkid1_2.38.1-4 libboost-date-time-dev_1.74.0.3+b4 libboost-date-time1.74-dev_1.74.0-18.1 libboost-date-time1.74.0_1.74.0-18.1 libboost-dev_1.74.0.3+b4 libboost-program-options-dev_1.74.0.3+b4 libboost-program-options1.74-dev_1.74.0-18.1 libboost-program-options1.74.0_1.74.0-18.1 libboost-regex-dev_1.74.0.3+b4 libboost-regex1.74-dev_1.74.0-18.1 libboost-regex1.74.0_1.74.0-18.1 libboost-serialization1.74-dev_1.74.0-18.1 libboost-serialization1.74.0_1.74.0-18.1 libboost-system-dev_1.74.0.3+b4 libboost-system1.74-dev_1.74.0-18.1 libboost-system1.74.0_1.74.0-18.1 libboost1.74-dev_1.74.0-18.1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.7-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-6+rpi1 libc-dev-bin_2.36-6+rpi1 libc6_2.36-6+rpi1 libc6-dev_2.36-6+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-10+rpi1 libccp4-data_8.0.0-2 libccp4-dev_8.0.0-2 libccp4c0_8.0.0-2 libccp4f0_8.0.0-2 libcifpp-data_5.0.5-6 libcifpp-dev_5.0.5-6 libcifpp5_5.0.5-6 libclipper-dev_2.1.20201109-1 libclipper2_2.1.20201109-1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39.50.20221208-5+rpi1 libctf0_2.39.50.20221208-5+rpi1 libcurl4_7.87.0-1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.4 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 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libsmartcols1_2.38.1-4 libsqlite3-0_3.40.0-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.2-1+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_252.2-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libuv1_1.44.2-1+rpi1 libx11-6_2:1.8.3-3 libx11-data_2:1.8.3-3 libxau6_1:1.0.9-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.14+dfsg-1.1 libxnvctrl0_510.85.02-2 libxxhash0_0.8.1-1 libzeep-dev_5.1.7-1 libzeep5.1_5.1.7-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.12-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 mrc_1.3.4-1 nano_7.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.4 ocl-icd-libopencl1_2.3.1-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1 pkg-config_1.8.0-12 pkgconf_1.8.0-12 pkgconf-bin_1.8.0-12 po-debconf_1.0.21+nmu1 procps_2:4.0.2-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-density-fitness-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sfftw-dev_2.1.5-6 sfftw2_2.1.5-6 sgml-base_1.31 sysvinit-utils_3.05-7 tar_1.34+dfsg-1 tzdata_2022f-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.B05Uz_w6/trustedkeys.kbx': General error
gpgv: Signature made Wed Jan 4 20:46:20 2023 UTC
gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE
gpgv: issuer "maarten@hekkelman.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./density-fitness_1.0.8-2.dsc
dpkg-source: info: extracting density-fitness in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking density-fitness_1.0.8.orig.tar.gz
dpkg-source: info: unpacking density-fitness_1.0.8-2.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-b90b3bde-4152-4d54-b5cf-9900a816fd6e
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package density-fitness
dpkg-buildpackage: info: source version 1.0.8-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The CXX compiler identification is GNU 12.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Mrc: /usr/bin/mrc (found version "1.3.4")
Using resources compiled with /usr/bin/mrc
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70.0") found components: system date_time regex
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13")
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: regex
-- Looking for ccp4/ccp4_general.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libccp4c.so
-- Looking for clipper/clipper.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-core.so
-- FFTW2 libraries - /usr/lib/libsfftw.so
-- - /usr/lib/libsrfftw.so
-- FFTW2 header directory - /usr/include
-- Performing Test _LINKING_WITH_CLIPPER_CORE
-- Performing Test _LINKING_WITH_CLIPPER_CORE - Success
-- Looking for clipper/clipper-ccp4.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so
-- Looking for clipper/clipper-contrib.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so
-- CCP4 include directory: /usr/include
CMake Warning (dev) at /usr/share/cmake-3.25/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
The package name passed to `find_package_handle_standard_args` (PkgConfig)
does not match the name of the calling package (pdb-redo). This can lead
to problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
/usr/share/cmake-3.25/Modules/FindPkgConfig.cmake:99 (find_package_handle_standard_args)
/usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoConfig.cmake:42 (include)
CMakeLists.txt:111 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0")
-- Checking for module 'gsl'
-- Found gsl, version 2.7.1
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/density-fitness.dir/build.make CMakeFiles/density-fitness.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 25%] Generating density-fitness_rsrc.obj
/usr/bin/mrc -o /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/density-fitness_rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/density-fitness.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/density-fitness.dir/build.make CMakeFiles/density-fitness.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 75%] Building CXX object CMakeFiles/density-fitness.dir/src/main.cpp.o
[ 75%] Building CXX object CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/density-fitness.dir/src/main.cpp.o -MF CMakeFiles/density-fitness.dir/src/main.cpp.o.d -o CMakeFiles/density-fitness.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_REGEX_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o -MF CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o.d -o CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o -c /<<PKGBUILDDIR>>/src/density-fitness.cpp
In file included from /usr/include/c++/12/vector:70,
from /usr/include/zeep/json/factory.hpp:13,
from /usr/include/zeep/json/element.hpp:14,
from /<<PKGBUILDDIR>>/src/density-fitness.cpp:36:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {zeep::json::element}; _Tp = zeep::json::element; _Alloc = std::allocator<zeep::json::element>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<zeep::json::element>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {zeep::json::element}; _Tp = zeep::json::element; _Alloc = std::allocator<zeep::json::element>]',
inlined from 'void zeep::json::element::emplace_back(Args&& ...) [with Args = {zeep::json::element}]' at /usr/include/zeep/json/element.hpp:288:31:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<zeep::json::element*, std::vector<zeep::json::element> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100%] Linking CXX executable density-fitness
/usr/bin/cmake -E cmake_link_script CMakeFiles/density-fitness.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro "CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o" "CMakeFiles/density-fitness.dir/src/main.cpp.o" "density-fitness_rsrc.obj" -o density-fitness /usr/lib/arm-linux-gnueabihf/libpdb-redo.so.3.0.4 /usr/lib/arm-linux-gnueabihf/libzeep.so.5.1.7 /usr/lib/arm-linux-gnueabihf/libcifpp.so.5.0.5 /usr/lib/arm-linux-gnueabihf/libz.so -latomic /usr/lib/arm-linux-gnueabihf/libnewuoa.so.0.1.2 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so -lgsl -lgslcblas -lm /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.74.0
/usr/bin/ld: warning: density-fitness_rsrc.obj: missing .note.GNU-stack section implies executable stack
/usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target density-fitness
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
No tests were found!!!
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/density-fitness/ -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/density-fitness AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/density-fitness/usr/bin/density-fitness
-- Installing: /<<PKGBUILDDIR>>/debian/density-fitness/usr/share/man/man1/density-fitness.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/density-fitness/usr/bin/density-fitness contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/density-fitness/usr/bin/density-fitness was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'density-fitness' in '../density-fitness_1.0.8-2_armhf.deb'.
dpkg-deb: building package 'density-fitness-dbgsym' in '../density-fitness-dbgsym_1.0.8-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../density-fitness_1.0.8-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../density-fitness_1.0.8-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-01-07T14:05:39Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
density-fitness_1.0.8-2_armhf.changes:
--------------------------------------
Format: 1.8
Date: Wed, 04 Jan 2023 21:39:02 +0100
Source: density-fitness
Binary: density-fitness density-fitness-dbgsym
Architecture: armhf
Version: 1.0.8-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Maarten L. Hekkelman <maarten@hekkelman.com>
Description:
density-fitness - Calculates per-residue electron density scores
Changes:
density-fitness (1.0.8-2) unstable; urgency=medium
.
* Add dependency on libcifpp-dev, libpdb-redo-dev
in order to have the example files installed.
Checksums-Sha1:
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Checksums-Sha256:
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Files:
c03096c7b6c1ee631b32f223d5c4c6a4 1040032 debug optional density-fitness-dbgsym_1.0.8-2_armhf.deb
9cc4721b4b41dd92bf3b60f38d918e7b 8136 science optional density-fitness_1.0.8-2_armhf.buildinfo
a3bb6a6f3de91e064844e7e175188955 451424 science optional density-fitness_1.0.8-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
density-fitness-dbgsym_1.0.8-2_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 1040032 bytes: control archive=544 bytes.
403 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: density-fitness-dbgsym
Source: density-fitness
Version: 1.0.8-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1071
Depends: density-fitness (= 1.0.8-2)
Section: debug
Priority: optional
Description: debug symbols for density-fitness
Build-Ids: 958d7c04581200ca9f6430e3220e47d271249a91
drwxr-xr-x root/root 0 2023-01-04 20:39 ./
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/lib/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/lib/debug/.build-id/95/
-rw-r--r-- root/root 1085608 2023-01-04 20:39 ./usr/lib/debug/.build-id/95/8d7c04581200ca9f6430e3220e47d271249a91.debug
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/share/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-01-04 20:39 ./usr/share/doc/density-fitness-dbgsym -> density-fitness
density-fitness_1.0.8-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 451424 bytes: control archive=1140 bytes.
1255 bytes, 23 lines control
367 bytes, 5 lines md5sums
Package: density-fitness
Version: 1.0.8-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5543
Depends: libc6 (>= 2.34), libcifpp5 (>= 5.0.5), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.5), libpdb-redo3 (>= 3.0.4), libstdc++6 (>= 11), libzeep5.1 (>= 5.1.7), zlib1g (>= 1:1.2.2)
Section: science
Priority: optional
Homepage: https://github.com/PDB-REDO/density-fitness
Description: Calculates per-residue electron density scores
The program density-fitness calculates electron density metrics,
for main- (includes CĪ² atom) and side-chain atoms of individual residues.
.
For this calculation, the program uses the structure model in either PDB
or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps.
If these maps are not readily available, the MTZ file and model can be used
to calculate maps clipper. Density-fitness support both X-ray and electron
diffraction data.
.
This program is essentially a reimplementation of edstats, a program
available from the CCP4 suite. However, the output now contains only the
RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm
and OPIA and no longer requires pre-calculated map coefficients.
drwxr-xr-x root/root 0 2023-01-04 20:39 ./
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/bin/
-rwxr-xr-x root/root 5658628 2023-01-04 20:39 ./usr/bin/density-fitness
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/share/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/share/doc/density-fitness/
-rw-r--r-- root/root 469 2023-01-04 20:39 ./usr/share/doc/density-fitness/changelog.Debian.gz
-rw-r--r-- root/root 316 2022-11-23 11:04 ./usr/share/doc/density-fitness/changelog.gz
-rw-r--r-- root/root 1873 2023-01-04 20:39 ./usr/share/doc/density-fitness/copyright
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/share/man/
drwxr-xr-x root/root 0 2023-01-04 20:39 ./usr/share/man/man1/
-rw-r--r-- root/root 2277 2023-01-04 20:39 ./usr/share/man/man1/density-fitness.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 29576
Build-Time: 75
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1086
Job: density-fitness_1.0.8-2
Machine Architecture: armhf
Package: density-fitness
Package-Time: 1183
Source-Version: 1.0.8-2
Space: 29576
Status: successful
Version: 1.0.8-2
--------------------------------------------------------------------------------
Finished at 2023-01-07T14:05:39Z
Build needed 00:19:43, 29576k disk space