density-fitness ā
1.0.3-1 ā
armhf ā 2022-02-06 10:55:14
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| density-fitness 1.0.3-1 (armhf) Sun, 06 Feb 2022 10:34:38 +0000 |
+==============================================================================+
Package: density-fitness
Version: 1.0.3-1
Source Version: 1.0.3-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-942a27ce-dbc8-43ca-85a6-20b11ce55da8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.4 MB in 29s (921 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'density-fitness' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/density-fitness.git
Please use:
git clone https://salsa.debian.org/med-team/density-fitness.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 43.7 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main density-fitness 1.0.3-1 (dsc) [2329 B]
Get:2 http://172.17.4.1/private bookworm-staging/main density-fitness 1.0.3-1 (tar) [38.0 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main density-fitness 1.0.3-1 (diff) [3420 B]
Fetched 43.7 kB in 0s (436 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/density-fitness-2rRNLF/density-fitness-1.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/density-fitness-2rRNLF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-LGp9on/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-LGp9on/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-LGp9on/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2850 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 80 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (19.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libcifpp-dev (>= 2.0.0-1~), libpdb-redo-dev (>= 2.0.1-3~), libzeep-dev, cmake, libgsl-dev, libclipper-dev, libnewuoa-dev, mrc, zlib1g-dev, libbz2-dev, pkg-config
Filtered Build-Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libcifpp-dev (>= 2.0.0-1~), libpdb-redo-dev (>= 2.0.1-3~), libzeep-dev, cmake, libgsl-dev, libclipper-dev, libnewuoa-dev, mrc, zlib1g-dev, libbz2-dev, pkg-config
dpkg-deb: building package 'sbuild-build-depends-density-fitness-dummy' in '/<<BUILDDIR>>/resolver-LGp9on/apt_archive/sbuild-build-depends-density-fitness-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-density-fitness-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ Sources [607 B]
Get:5 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ Packages [686 B]
Fetched 2626 B in 1s (3524 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install density-fitness build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bzip2 cmake
cmake-data cpp-11 debhelper dh-autoreconf dh-elpa-helper
dh-strip-nondeterminism dwz emacsen-common fftw-dev fftw2 file g++-11 gcc-11
gcc-11-base gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libarchive13 libasan6 libatomic1 libboost-date-time-dev
libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev
libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-serialization1.74-dev libboost-serialization1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbrotli1 libbsd0 libbz2-1.0 libbz2-dev libcc1-0
libccp4-data libccp4-dev libccp4c0 libccp4f0 libcifpp-data libcifpp-dev
libcifpp2 libclipper-dev libclipper2 libcurl3-gnutls libcurl4
libdebhelper-perl libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7
libexpat1 libfabric1 libfile-stripnondeterminism-perl libgcc-11-dev
libgcc-s1 libgfortran5 libglib2.0-0 libgomp1 libgsl-dev libgsl27
libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1 libicu-dev libicu67
libjsoncpp25 libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev
libncurses6 libncursesw6 libnewuoa-dev libnewuoa0 libnghttp2-14 libnl-3-200
libnl-route-3-200 libopenmpi3 libpciaccess0 libpdb-redo-dev libpdb-redo2
libpipeline1 libpmix2 libprocps8 libpsl5 librdmacm1 librhash0 librtmp1
libsigsegv2 libssh2-1 libstdc++-11-dev libstdc++6 libsub-override-perl
libtinfo6 libtool libubsan1 libuchardet0 libuv1 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep-dev libzeep5.1 m4
man-db mrc ocl-icd-libopencl1 pkg-config po-debconf procps sfftw-dev sfftw2
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bzip2-doc cmake-doc ninja-build
cmake-format gcc-11-locales dh-make mpi-defaults-bin gcc-11-doc gettext-doc
libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev
libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev
libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev
libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libclipper-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
icu-doc pciutils libstdc++-11-doc libtool-doc gfortran | fortran95-compiler
gcj-jdk libzeep-doc m4-doc apparmor less www-browser opencl-icd
libmail-box-perl
Recommended packages:
curl | wget | lynx bzip2-doc ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers libgpm2
publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism dwz
emacsen-common fftw-dev fftw2 file gettext gettext-base groff-base
icu-devtools intltool-debian libarchive-zip-perl libarchive13
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-dev libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libbrotli1 libbsd0 libbz2-dev
libccp4-data libccp4-dev libccp4c0 libccp4f0 libcifpp-data libcifpp-dev
libcifpp2 libclipper-dev libclipper2 libcurl3-gnutls libcurl4
libdebhelper-perl libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7
libexpat1 libfabric1 libfile-stripnondeterminism-perl libgfortran5
libglib2.0-0 libgsl-dev libgsl27 libgslcblas0 libhwloc-plugins libhwloc15
libibverbs1 libicu-dev libicu67 libjsoncpp25 libmagic-mgc libmagic1 libmd0
libmmdb2-0 libmmdb2-dev libncurses6 libnewuoa-dev libnewuoa0 libnghttp2-14
libnl-3-200 libnl-route-3-200 libopenmpi3 libpciaccess0 libpdb-redo-dev
libpdb-redo2 libpipeline1 libpmix2 libprocps8 libpsl5 librdmacm1 librhash0
librtmp1 libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0
libuv1 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2
libxnvctrl0 libzeep-dev libzeep5.1 m4 man-db mrc ocl-icd-libopencl1
pkg-config po-debconf procps sbuild-build-depends-density-fitness-dummy
sfftw-dev sfftw2 zlib1g-dev
The following packages will be upgraded:
bzip2 cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libbz2-1.0
libcc1-0 libgcc-11-dev libgcc-s1 libgomp1 libncursesw6 libstdc++-11-dev
libstdc++6 libtinfo6 libubsan1
17 upgraded, 122 newly installed, 0 to remove and 63 not upgraded.
Need to get 97.8 MB of archives.
After this operation, 32.7 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-LGp9on/apt_archive ./ sbuild-build-depends-density-fitness-dummy 0.invalid.0 [968 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bzip2 armhf 1.0.8-5 [47.2 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libbz2-1.0 armhf 1.0.8-5 [43.1 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-14+rpi1 [37.9 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-14+rpi1 [88.0 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-14+rpi1 [8196 B]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-14+rpi1 [1947 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-14+rpi1 [798 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-14+rpi1 [207 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-14+rpi1 [467 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-14+rpi1 [7912 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-14+rpi1 [1963 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-14+rpi1 [697 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-14+rpi1 [14.0 MB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-14+rpi1 [7073 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-14+rpi1 [36.2 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libtinfo6 armhf 6.3-2 [335 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libncursesw6 armhf 6.3-2 [105 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-4 [1308 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-2 [79.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-6 [60.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-6 [476 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.5.2-1 [301 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.81.0-1 [318 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.3-3 [81.6 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-3 [66.6 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.2-1 [141 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.43.0-1 [122 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.10 [11.3 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.22.1-1 [1905 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.22.1-1+b1 [3478 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libibverbs1 armhf 39.0-1 [53.6 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf librdmacm1 armhf 39.0-1 [60.4 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libfabric1 armhf 1.11.0-3 [310 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libhwloc15 armhf 2.7.0-2 [127 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.81.0-1 [315 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libpciaccess0 armhf 0.16-3 [51.2 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.5-1 [108 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxnvctrl0 armhf 470.94-1 [26.1 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf ocl-icd-libopencl1 armhf 2.2.14-3 [39.9 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libhwloc-plugins armhf 2.7.0-2 [20.3 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libpmix2 armhf 4.1.1~rc6-1 [481 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libopenmpi3 armhf 4.1.2~rc1-5+rpi1+b1 [1776 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf fftw2 armhf 2.1.5-6 [184 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf fftw-dev armhf 2.1.5-6 [212 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-14 [9533 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time1.74.0 armhf 1.74.0-14 [242 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libboost-serialization1.74.0 armhf 1.74.0-14 [319 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libboost-serialization1.74-dev armhf 1.74.0-14 [387 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time1.74-dev armhf 1.74.0-14 [251 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libboost-date-time-dev armhf 1.74.0.3+b2 [4604 B]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b2 [4824 B]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex1.74.0 armhf 1.74.0-14 [449 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libboost-regex1.74-dev armhf 1.74.0-14 [551 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams1.74.0 armhf 1.74.0-14 [260 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams1.74-dev armhf 1.74.0-14 [269 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams-dev armhf 1.74.0.3+b2 [4588 B]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74.0 armhf 1.74.0-14 [334 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options1.74-dev armhf 1.74.0-14 [373 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libboost-program-options-dev armhf 1.74.0.3+b2 [4616 B]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74.0 armhf 1.74.0-14 [242 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libboost-system1.74-dev armhf 1.74.0-14 [243 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libboost-system-dev armhf 1.74.0.3+b2 [4740 B]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5 [26.8 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libccp4-data all 6.5.1-5 [61.6 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libccp4c0 armhf 6.5.1-5 [74.3 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-14+rpi1 [235 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libmmdb2-0 armhf 2.0.5-1 [264 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libccp4f0 armhf 6.5.1-5 [202 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libccp4-dev armhf 6.5.1-5 [42.8 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libcifpp-data all 2.0.4-8 [437 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libcifpp2 armhf 2.0.4-8 [786 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libcifpp-dev armhf 2.0.4-8 [74.4 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf sfftw2 armhf 2.1.5-6 [186 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libclipper2 armhf 2.1.20201109-1 [1069 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf sfftw-dev armhf 2.1.5-6 [214 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libclipper-dev armhf 2.1.20201109-1 [82.6 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.3-1 [1209 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-3 [81.4 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libgsl27 armhf 2.7.1+dfsg-3 [758 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libgsl-dev armhf 2.7.1+dfsg-3 [958 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libnewuoa0 armhf 0.1.1-2 [16.4 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libnewuoa-dev armhf 0.1.1-2 [4916 B]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libzeep5.1 armhf 5.1.7-1 [496 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libpdb-redo2 armhf 2.0.3-1 [177 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libpdb-redo-dev armhf 2.0.3-1 [627 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libzeep-dev armhf 5.1.7-1 [78.8 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf mrc armhf 1.3.4-1 [39.1 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
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Setting up automake (1:1.16.5-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up cmake (3.22.1-1+b1) ...
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Setting up libfabric1:armhf (1.11.0-3) ...
Setting up libpmix2:armhf (4.1.1~rc6-1) ...
Setting up libopenmpi3:armhf (4.1.2~rc1-5+rpi1+b1) ...
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Setting up libboost-iostreams-dev:armhf (1.74.0.3+b2) ...
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Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-14+rpi1 gcc-11_11.2.0-14+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-14+rpi1 libstdc++6_11.2.0-14+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-5 cmake_3.22.1-1+b1 cmake-data_3.22.1-1 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-14+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 emacsen-common_3.0.4 fakeroot_1.25.3-1.1 fftw-dev_2.1.5-6 fftw2_2.1.5-6 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-14+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-14+rpi1 gcc-11-base_11.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 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libssl1.1_1.1.1l-1 libstdc++-11-dev_11.2.0-14+rpi1 libstdc++6_11.2.0-14+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.7-1+rpi1 libtasn1-6_4.18.0-4 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libuv1_1.43.0-1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.12+dfsg-5 libxnvctrl0_470.94-1 libxxhash0_0.8.0-2+rpi1 libzeep-dev_5.1.7-1 libzeep5.1_5.1.7-1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-4 mrc_1.3.4-1 ncurses-base_6.3-1 ncurses-bin_6.3-1 netbase_6.3 ocl-icd-libopencl1_2.2.14-3 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-6 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-density-fitness-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sfftw-dev_2.1.5-6 sfftw2_2.1.5-6 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.0rEVLn3c/trustedkeys.kbx': General error
gpgv: Signature made Fri Feb 4 07:44:12 2022 UTC
gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE
gpgv: issuer "maarten@hekkelman.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./density-fitness_1.0.3-1.dsc
dpkg-source: info: extracting density-fitness in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking density-fitness_1.0.3.orig.tar.gz
dpkg-source: info: unpacking density-fitness_1.0.3-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-942a27ce-dbc8-43ca-85a6-20b11ce55da8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package density-fitness
dpkg-buildpackage: info: source version 1.0.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DBUILD_SHARED_LIBS=ON
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_SHARED_LIBS=ON ..
-- The CXX compiler identification is GNU 11.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found Mrc: /usr/bin/mrc (found version "1.3.4")
Using resources compiled with /usr/bin/mrc
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70.0") found components: system iostreams regex program_options
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70.0") found components: system date_time regex
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Looking for ccp4/ccp4_general.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libccp4c.so
-- Looking for clipper/clipper.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-core.so
-- FFTW2 libraries - /usr/lib/libsfftw.so
-- - /usr/lib/libsrfftw.so
-- FFTW2 header directory - /usr/include
-- Performing Test _LINKING_WITH_CLIPPER_CORE
-- Performing Test _LINKING_WITH_CLIPPER_CORE - Success
-- Looking for clipper/clipper-ccp4.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so
-- Looking for clipper/clipper-contrib.h - /usr/include
-- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so
-- CCP4 include directory: /usr/include
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0") found components: program_options
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/density-fitness.dir/build.make CMakeFiles/density-fitness.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 33%] Generating density-fitness_rsrc.obj
/usr/bin/mrc -o /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/density-fitness_rsrc.obj /usr/share/libcifpp/mmcif_pdbx_v50.dic
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/density-fitness.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/density-fitness.dir/build.make CMakeFiles/density-fitness.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 66%] Building CXX object CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o
/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf -I/<<PKGBUILDDIR>>/PRIVATE -I/<<PKGBUILDDIR>>/pdb-redo::pdb-redo -I/<<PKGBUILDDIR>>/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o -MF CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o.d -o CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o -c /<<PKGBUILDDIR>>/src/density-fitness.cpp
In file included from /usr/include/c++/11/vector:72,
from /usr/include/boost/program_options/errors.hpp:14,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from /<<PKGBUILDDIR>>/src/density-fitness.cpp:36:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {zeep::json::element}; _Tp = zeep::json::element; _Alloc = std::allocator<zeep::json::element>]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<zeep::json::element>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void zeep::json::element::emplace_back(Args&& ...) [with Args = {zeep::json::element}]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<zeep::json::element*, std::vector<zeep::json::element> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100%] Linking CXX executable density-fitness
/usr/bin/cmake -E cmake_link_script CMakeFiles/density-fitness.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o density-fitness_rsrc.obj -o density-fitness /usr/lib/arm-linux-gnueabihf/libpdb-redo.so.2.0.3 /usr/lib/arm-linux-gnueabihf/libcifpp.so.2.0.3 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_system.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_iostreams.so.1.74.0 -latomic /usr/lib/arm-linux-gnueabihf/libzeep.so.5.1.7 -lpthread /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so /usr/lib/arm-linux-gnueabihf/libnewuoa.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target density-fitness
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_test -a
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
UpdateCTestConfiguration from :/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
No tests were found!!!
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/density-fitness/ -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/density-fitness AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/density-fitness/usr/bin/density-fitness
-- Installing: /<<PKGBUILDDIR>>/debian/density-fitness/usr/share/man/man1/density-fitness.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/density-fitness/usr/bin/density-fitness contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/density-fitness/usr/bin/density-fitness was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'density-fitness-dbgsym' in '../density-fitness-dbgsym_1.0.3-1_armhf.deb'.
dpkg-deb: building package 'density-fitness' in '../density-fitness_1.0.3-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../density-fitness_1.0.3-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-02-06T10:55:07Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
density-fitness_1.0.3-1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Fri, 04 Feb 2022 08:33:54 +0100
Source: density-fitness
Binary: density-fitness density-fitness-dbgsym
Architecture: armhf
Version: 1.0.3-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Maarten L. Hekkelman <maarten@hekkelman.com>
Description:
density-fitness - Calculates per-residue electron density scores
Changes:
density-fitness (1.0.3-1) unstable; urgency=medium
.
* New upstream release.
Checksums-Sha1:
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1dd7f647f8eb13a57336b7ec2ed60ceaa0e4e0c7 470392 density-fitness_1.0.3-1_armhf.deb
Checksums-Sha256:
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a1e9dea494ec7d2a4450493eddefc758ab0d804a9f1de3a7bfb583f11174c2c5 470392 density-fitness_1.0.3-1_armhf.deb
Files:
86d2f2bea81d5f20aa9b2d95e140792b 993156 debug optional density-fitness-dbgsym_1.0.3-1_armhf.deb
2b8398c72ca9d258e0ca0b736873bfe7 8075 science optional density-fitness_1.0.3-1_armhf.buildinfo
f93e3f0d35c62faa3d1f5113c17ab653 470392 science optional density-fitness_1.0.3-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
density-fitness-dbgsym_1.0.3-1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 993156 bytes: control archive=544 bytes.
403 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: density-fitness-dbgsym
Source: density-fitness
Version: 1.0.3-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1056
Depends: density-fitness (= 1.0.3-1)
Section: debug
Priority: optional
Description: debug symbols for density-fitness
Build-Ids: 7273a8e8c600ef924ab69381ce3dcd68b305d468
drwxr-xr-x root/root 0 2022-02-04 07:33 ./
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/lib/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/lib/debug/.build-id/72/
-rw-r--r-- root/root 1071076 2022-02-04 07:33 ./usr/lib/debug/.build-id/72/73a8e8c600ef924ab69381ce3dcd68b305d468.debug
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/share/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-02-04 07:33 ./usr/share/doc/density-fitness-dbgsym -> density-fitness
density-fitness_1.0.3-1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 470392 bytes: control archive=1156 bytes.
1315 bytes, 23 lines control
367 bytes, 5 lines md5sums
Package: density-fitness
Version: 1.0.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5757
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.4), libcifpp2 (>= 2.0.4), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.5), libpdb-redo2 (>= 2.0.3), libstdc++6 (>= 11), libzeep5.1 (>= 5.1.7)
Section: science
Priority: optional
Homepage: https://github.com/PDB-REDO/density-fitness
Description: Calculates per-residue electron density scores
The program density-fitness calculates electron density metrics,
for main- (includes CĪ² atom) and side-chain atoms of individual residues.
.
For this calculation, the program uses the structure model in either PDB
or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps.
If these maps are not readily available, the MTZ file and model can be used
to calculate maps clipper. Density-fitness support both X-ray and electron
diffraction data.
.
This program is essentially a reimplementation of edstats, a program
available from the CCP4 suite. However, the output now contains only the
RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm
and OPIA and no longer requires pre-calculated map coefficients.
drwxr-xr-x root/root 0 2022-02-04 07:33 ./
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/bin/
-rwxr-xr-x root/root 5877860 2022-02-04 07:33 ./usr/bin/density-fitness
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/share/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/share/doc/density-fitness/
-rw-r--r-- root/root 379 2022-02-04 07:33 ./usr/share/doc/density-fitness/changelog.Debian.gz
-rw-r--r-- root/root 160 2022-02-04 07:31 ./usr/share/doc/density-fitness/changelog.gz
-rw-r--r-- root/root 1873 2022-02-04 07:33 ./usr/share/doc/density-fitness/copyright
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/share/man/
drwxr-xr-x root/root 0 2022-02-04 07:33 ./usr/share/man/man1/
-rw-r--r-- root/root 2277 2022-02-04 07:33 ./usr/share/man/man1/density-fitness.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 28640
Build-Time: 208
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 971
Job: density-fitness_1.0.3-1
Machine Architecture: armhf
Package: density-fitness
Package-Time: 1229
Source-Version: 1.0.3-1
Space: 28640
Status: successful
Version: 1.0.3-1
--------------------------------------------------------------------------------
Finished at 2022-02-06T10:55:07Z
Build needed 00:20:29, 28640k disc space