density-fitness ā
1.0.0-4 ā
armhf ā 2021-11-04 21:32:43
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| density-fitness 1.0.0-4 (armhf) Thu, 04 Nov 2021 21:18:28 +0000 |
+==============================================================================+
Package: density-fitness
Version: 1.0.0-4
Source Version: 1.0.0-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-9df43968-91d9-4d2d-8a43-d166ae7f0dd2' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 26s (1005 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'density-fitness' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/density-fitness.git
Please use:
git clone https://salsa.debian.org/med-team/density-fitness.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 103 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main density-fitness 1.0.0-4 (dsc) [2297 B]
Get:2 http://172.17.0.1/private bookworm-staging/main density-fitness 1.0.0-4 (tar) [96.7 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main density-fitness 1.0.0-4 (diff) [3736 B]
Fetched 103 kB in 0s (367 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/density-fitness-6GpU6n/density-fitness-1.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/density-fitness-6GpU6n' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-YXxbbl/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-YXxbbl/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-YXxbbl/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2709 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libcifpp-dev, libpdb-redo-dev (>= 1.0.2-3~), libzeep-dev, autoconf-archive, libgsl-dev, libclipper-dev, libnewuoa-dev, pkg-config
Filtered Build-Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libcifpp-dev, libpdb-redo-dev (>= 1.0.2-3~), libzeep-dev, autoconf-archive, libgsl-dev, libclipper-dev, libnewuoa-dev, pkg-config
dpkg-deb: building package 'sbuild-build-depends-density-fitness-dummy' in '/<<BUILDDIR>>/resolver-YXxbbl/apt_archive/sbuild-build-depends-density-fitness-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-density-fitness-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ Sources [596 B]
Get:5 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ Packages [671 B]
Fetched 2600 B in 1s (3377 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install density-fitness build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file
gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev
libboost-date-time1.74.0 libboost-dev libboost-iostreams-dev
libboost-iostreams1.74-dev libboost-iostreams1.74.0
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-serialization1.74-dev libboost-serialization1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0
libcifpp-data libcifpp-dev libcifpp1 libclipper-dev libclipper2
libdebhelper-perl libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7
libfabric1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libgsl-dev libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1
libicu-dev libicu67 libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev
libnewuoa-dev libnewuoa0 libnl-3-200 libnl-route-3-200 libopenmpi3
libpciaccess0 libpdb-redo-dev libpdb-redo1 libpipeline1 libpmix2 librdmacm1
libsigsegv2 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data
libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep-dev
libzeep5.1 m4 man-db ocl-icd-libopencl1 pkg-config po-debconf sensible-utils
sfftw-dev sfftw2
Suggested packages:
gnu-standards autoconf-doc dh-make mpi-defaults-bin gettext-doc
libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc
libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
libboost-context1.74-dev libboost-contract1.74-dev
libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev
libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev
libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev
libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libclipper-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
icu-doc pciutils libtool-doc gfortran | fortran95-compiler gcj-jdk
libzeep-doc mrc m4-doc apparmor less www-browser opencl-icd libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs ibverbs-providers libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz fftw-dev fftw2 file
gettext gettext-base groff-base icu-devtools intltool-debian
libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev
libboost-date-time1.74.0 libboost-dev libboost-iostreams-dev
libboost-iostreams1.74-dev libboost-iostreams1.74.0
libboost-program-options-dev libboost-program-options1.74-dev
libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-serialization1.74-dev libboost-serialization1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0
libcifpp-data libcifpp-dev libcifpp1 libclipper-dev libclipper2
libdebhelper-perl libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7
libfabric1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libgsl-dev libgsl25 libgslcblas0 libhwloc-plugins libhwloc15 libibverbs1
libicu-dev libicu67 libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev
libnewuoa-dev libnewuoa0 libnl-3-200 libnl-route-3-200 libopenmpi3
libpciaccess0 libpdb-redo-dev libpdb-redo1 libpipeline1 libpmix2 librdmacm1
libsigsegv2 libsub-override-perl libtool libuchardet0 libx11-6 libx11-data
libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 libzeep-dev
libzeep5.1 m4 man-db ocl-icd-libopencl1 pkg-config po-debconf
sbuild-build-depends-density-fitness-dummy sensible-utils sfftw-dev sfftw2
0 upgraded, 102 newly installed, 0 to remove and 1 not upgraded.
Need to get 57.8 MB of archives.
After this operation, 336 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-YXxbbl/apt_archive ./ sbuild-build-depends-density-fitness-dummy 0.invalid.0 [956 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf autoconf-archive all 20210219-2 [767 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.5-1 [823 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf libboost-date-time1.74.0 armhf 1.74.0-9 [241 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libboost-serialization1.74.0 armhf 1.74.0-9 [319 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libboost-serialization1.74-dev armhf 1.74.0-9 [388 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libboost-date-time1.74-dev armhf 1.74.0-9 [251 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libboost-date-time-dev armhf 1.74.0.3+b1 [4604 B]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf libboost-regex1.74.0 armhf 1.74.0-9 [448 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libboost-regex1.74-dev armhf 1.74.0-9 [553 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams1.74.0 armhf 1.74.0-9 [260 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams1.74-dev armhf 1.74.0-9 [269 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams-dev armhf 1.74.0.3+b1 [4588 B]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libboost-program-options1.74.0 armhf 1.74.0-9 [334 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libboost-program-options1.74-dev armhf 1.74.0-9 [374 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libboost-program-options-dev armhf 1.74.0.3+b1 [4616 B]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libboost-system-dev armhf 1.74.0.3+b1 [4744 B]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libccp4-data all 6.5.1-5 [61.6 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libccp4c0 armhf 6.5.1-5 [74.3 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-10+rpi1 [234 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libmmdb2-0 armhf 2.0.5-1 [264 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libccp4f0 armhf 6.5.1-5 [202 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libccp4-dev armhf 6.5.1-5 [42.8 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libcifpp-data all 1.0.1-5 [584 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libcifpp1 armhf 1.0.1-5 [742 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libcifpp-dev armhf 1.0.1-5 [67.9 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [126 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libibverbs1 armhf 36.0-1 [53.2 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf librdmacm1 armhf 36.0-1 [60.1 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libfabric1 armhf 1.11.0-2 [311 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libhwloc15 armhf 2.6.0-1 [127 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libpciaccess0 armhf 0.16-1 [51.0 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libxnvctrl0 armhf 470.57.02-2 [26.0 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf ocl-icd-libopencl1 armhf 2.2.14-3 [39.9 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libhwloc-plugins armhf 2.6.0-1 [20.2 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libpmix2 armhf 4.1.1~rc4-1 [477 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libopenmpi3 armhf 4.1.2~rc1-5+rpi1 [1779 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf fftw2 armhf 2.1.5-4.2+b2 [244 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf fftw-dev armhf 2.1.5-4.2+b2 [264 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf sfftw2 armhf 2.1.5-4.2+b2 [229 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libclipper2 armhf 2.1.20201109-1 [1069 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libmmdb2-dev armhf 2.0.5-1 [91.9 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf sfftw-dev armhf 2.1.5-4.2+b2 [250 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libclipper-dev armhf 2.1.20201109-1 [82.6 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.0-3 [1209 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libgsl-dev armhf 2.6+dfsg-2 [950 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libnewuoa0 armhf 0.1.1-2 [16.4 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libnewuoa-dev armhf 0.1.1-2 [4916 B]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libzeep5.1 armhf 5.1.4-1 [492 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libpdb-redo1 armhf 1.0.2-3 [3163 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libpdb-redo-dev armhf 1.0.2-3 [621 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf libzeep-dev armhf 5.1.4-1 [78.6 kB]
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Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.70.0-3) ...
No schema files found: doing nothing.
Setting up libboost-iostreams1.74.0:armhf (1.74.0-9) ...
Setting up libboost-program-options1.74.0:armhf (1.74.0-9) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up autoconf-archive (20210219-2) ...
Setting up file (1:5.39-3) ...
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Setting up libnewuoa0 (0.1.1-2) ...
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Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libboost-program-options-dev:armhf (1.74.0.3+b1) ...
Setting up libx11-data (2:1.7.2-2) ...
Setting up libboost-system1.74-dev:armhf (1.74.0-9) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up libboost-regex1.74.0:armhf (1.74.0-9) ...
Setting up libhwloc15:armhf (2.6.0-1) ...
Setting up libevent-core-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libmmdb2-dev (2.0.5-1) ...
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Setting up libccp4c0:armhf (6.5.1-5) ...
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Setting up libcifpp1 (1.0.1-5) ...
Setting up libmd0:armhf (1.0.4-1) ...
Setting up sensible-utils (0.0.17) ...
Setting up ocl-icd-libopencl1:armhf (2.2.14-3) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libboost-dev:armhf (1.74.0.3+b1) ...
Setting up libboost-date-time1.74.0:armhf (1.74.0-9) ...
Setting up libzeep5.1 (5.1.4-1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-1) ...
Setting up libccp4f0:armhf (6.5.1-5) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up libgsl-dev (2.6+dfsg-2) ...
Setting up libccp4-dev:armhf (6.5.1-5) ...
Setting up libtool (2.4.6-15) ...
Setting up libnewuoa-dev (0.1.1-2) ...
Setting up libboost-system-dev:armhf (1.74.0.3+b1) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up autoconf (2.71-2) ...
Setting up libboost-serialization1.74-dev:armhf (1.74.0-9) ...
Setting up libcifpp-dev:armhf (1.0.1-5) ...
Setting up dh-strip-nondeterminism (1.12.0-2) ...
Setting up dwz (0.14-1) ...
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Setting up groff-base (1.22.4-7) ...
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Setting up automake (1:1.16.5-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libibverbs1:armhf (36.0-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
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Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libxnvctrl0:armhf (470.57.02-2) ...
Setting up libboost-iostreams1.74-dev:armhf (1.74.0-9) ...
Setting up dh-autoreconf (20) ...
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Setting up librdmacm1:armhf (36.0-1) ...
Setting up debhelper (13.5.2) ...
Setting up libboost-iostreams-dev:armhf (1.74.0.3+b1) ...
Setting up libhwloc-plugins:armhf (2.6.0-1) ...
Setting up libzeep-dev (5.1.4-1) ...
Setting up libfabric1 (1.11.0-2) ...
Setting up libpmix2:armhf (4.1.1~rc4-1) ...
Setting up libopenmpi3:armhf (4.1.2~rc1-5+rpi1) ...
Setting up sfftw2 (2.1.5-4.2+b2) ...
Setting up fftw2 (2.1.5-4.2+b2) ...
Setting up sfftw-dev (2.1.5-4.2+b2) ...
Setting up libclipper2:armhf (2.1.20201109-1) ...
Setting up fftw-dev (2.1.5-4.2+b2) ...
Setting up libclipper-dev:armhf (2.1.20201109-1) ...
Setting up libpdb-redo1 (1.0.2-3) ...
Setting up libpdb-redo-dev (1.0.2-3) ...
Setting up sbuild-build-depends-density-fitness-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 autoconf-archive_20210219-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.78 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 fftw-dev_2.1.5-4.2+b2 fftw2_2.1.5-4.2+b2 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libboost-date-time-dev_1.74.0.3+b1 libboost-date-time1.74-dev_1.74.0-9 libboost-date-time1.74.0_1.74.0-9 libboost-dev_1.74.0.3+b1 libboost-iostreams-dev_1.74.0.3+b1 libboost-iostreams1.74-dev_1.74.0-9 libboost-iostreams1.74.0_1.74.0-9 libboost-program-options-dev_1.74.0.3+b1 libboost-program-options1.74-dev_1.74.0-9 libboost-program-options1.74.0_1.74.0-9 libboost-regex1.74-dev_1.74.0-9 libboost-regex1.74.0_1.74.0-9 libboost-serialization1.74-dev_1.74.0-9 libboost-serialization1.74.0_1.74.0-9 libboost-system-dev_1.74.0.3+b1 libboost-system1.74-dev_1.74.0-9 libboost-system1.74.0_1.74.0-9 libboost1.74-dev_1.74.0-9 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libccp4-data_6.5.1-5 libccp4-dev_6.5.1-5 libccp4c0_6.5.1-5 libccp4f0_6.5.1-5 libcifpp-data_1.0.1-5 libcifpp-dev_1.0.1-5 libcifpp1_1.0.1-5 libclipper-dev_2.1.20201109-1 libclipper2_2.1.20201109-1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libevent-core-2.1-7_2.1.12-stable-1 libevent-pthreads-2.1-7_2.1.12-stable-1 libext2fs2_1.46.4-1 libfabric1_1.11.0-2 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran5_11.2.0-10+rpi1 libglib2.0-0_2.70.0-3 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhwloc-plugins_2.6.0-1 libhwloc15_2.6.0-1 libibverbs1_36.0-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmmdb2-0_2.0.5-1 libmmdb2-dev_2.0.5-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnewuoa-dev_0.1.1-2 libnewuoa0_0.1.1-2 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenmpi3_4.1.2~rc1-5+rpi1 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpciaccess0_0.16-1 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libpdb-redo-dev_1.0.2-3 libpdb-redo1_1.0.2-3 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libpmix2_4.1.1~rc4-1 librdmacm1_36.0-1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxml2_2.9.12+dfsg-5 libxnvctrl0_470.57.02-2 libxxhash0_0.8.0-2+rpi1 libzeep-dev_5.1.4-1 libzeep5.1_5.1.4-1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 ocl-icd-libopencl1_2.2.14-3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-density-fitness-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sfftw-dev_2.1.5-4.2+b2 sfftw2_2.1.5-4.2+b2 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.xFiFQ96Z/trustedkeys.kbx': General error
gpgv: Signature made Wed Nov 3 07:08:56 2021 UTC
gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE
gpgv: issuer "maarten@hekkelman.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./density-fitness_1.0.0-4.dsc
dpkg-source: info: extracting density-fitness in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking density-fitness_1.0.0.orig.tar.gz
dpkg-source: info: unpacking density-fitness_1.0.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying makefile.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-9df43968-91d9-4d2d-8a43-d166ae7f0dd2
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package density-fitness
dpkg-buildpackage: info: source version 1.0.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config/m4': No such file or directory
configure.ac:65: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:65: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:65: the top level
configure.ac:65: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:65: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2894: _AC_LINK_IFELSE is expanded from...
./lib/autoconf/general.m4:2911: AC_LINK_IFELSE is expanded from...
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:65: the top level
configure.ac:270: warning: AC_OUTPUT should be used without arguments.
configure.ac:270: You should run autoupdate.
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --disable-revision
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-revision
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ supports C++17 features with -std=c++17... yes
checking whether C++ compiler accepts -fstandalone-debug... no
checking for a BSD-compatible install... /usr/bin/install -c
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for gcc... gcc
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for a sed that does not truncate output... /bin/sed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc is Clang... no
checking whether pthreads work with "-pthread" and "-lpthread"... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking for mrc... no
configure: WARNING: The mrc application was not found, not using resources.
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for filesystem... yes
checking for boostlib >= 1.65.1 (106501)... yes
checking whether the Boost::Program_Options library is available... yes
checking for exit in -lboost_program_options... yes
checking whether the Boost::IOStreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for pkg-config... /usr/bin/pkg-config
checking for libcifpp ... yes
checking for libzeep ... yes
checking for pkg-config... (cached) /usr/bin/pkg-config
checking for libpdb-redo ... yes
checking for clipper ... yes
checking clipper version... ok
configure: creating ./config.status
config.status: creating GNUmakefile
config.status: creating src/config.hpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p obj
>> src/density-fitness.cpp
In file included from /usr/include/c++/10/vector:72,
from /usr/include/boost/program_options/errors.hpp:14,
from /usr/include/boost/program_options/options_description.hpp:12,
from /usr/include/boost/program_options.hpp:15,
from src/density-fitness.cpp:38:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {zeep::json::element}; _Tp = zeep::json::element; _Alloc = std::allocator<zeep::json::element>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<zeep::json::element>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void zeep::json::element::emplace_back(Args&& ...) [with Args = {zeep::json::element}]':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<zeep::json::element*, std::vector<zeep::json::element> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-> density-fitness
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 test VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
obj/density-fitness.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/density-fitness/ -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/density-fitness AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
install -d /<<PKGBUILDDIR>>/debian/density-fitness/usr/bin
install density-fitness /<<PKGBUILDDIR>>/debian/density-fitness/usr/bin/density-fitness
install -d /<<PKGBUILDDIR>>/debian/density-fitness/usr/share/man/man1
install -m 644 doc/density-fitness.1 /<<PKGBUILDDIR>>/debian/density-fitness/usr/share/man/man1/density-fitness.1;
gzip /<<PKGBUILDDIR>>/debian/density-fitness/usr/share/man/man1/density-fitness.1;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/density-fitness/usr/bin/density-fitness contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/density-fitness/usr/bin/density-fitness was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'density-fitness' in '../density-fitness_1.0.0-4_armhf.deb'.
dpkg-deb: building package 'density-fitness-dbgsym' in '../density-fitness-dbgsym_1.0.0-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../density-fitness_1.0.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-11-04T21:32:34Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
density-fitness_1.0.0-4_armhf.changes:
--------------------------------------
Format: 1.8
Date: Wed, 03 Nov 2021 08:01:09 +0100
Source: density-fitness
Binary: density-fitness density-fitness-dbgsym
Architecture: armhf
Version: 1.0.0-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Maarten L. Hekkelman <maarten@hekkelman.com>
Description:
density-fitness - Calculates per-residue electron density scores
Changes:
density-fitness (1.0.0-4) unstable; urgency=medium
.
* Force dependency on right libpdb-redo
Checksums-Sha1:
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0647ff9051c76631816542f17a04df1fad979392 7295 density-fitness_1.0.0-4_armhf.buildinfo
fa55fcdd282a182fdce65ec8eafeeddeeb15716f 83784 density-fitness_1.0.0-4_armhf.deb
Checksums-Sha256:
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6a26eacc0e887cfb0710359a87bfcb939d6306ab972f09aa4dbe73ce3d3656d2 7295 density-fitness_1.0.0-4_armhf.buildinfo
8ef1103e8a3c364a6bcbc8ca48881c7aa699d9e807413bb93713ce03face46a3 83784 density-fitness_1.0.0-4_armhf.deb
Files:
e012367e08ea71f0e4a648097371304e 1644260 debug optional density-fitness-dbgsym_1.0.0-4_armhf.deb
897d557f2c2b1ce401893a91b3649d12 7295 science optional density-fitness_1.0.0-4_armhf.buildinfo
b09c8d8afe92649a4b0b48b5dbf4c5c1 83784 science optional density-fitness_1.0.0-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
density-fitness-dbgsym_1.0.0-4_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 1644260 bytes: control archive=540 bytes.
403 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: density-fitness-dbgsym
Source: density-fitness
Version: 1.0.0-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1738
Depends: density-fitness (= 1.0.0-4)
Section: debug
Priority: optional
Description: debug symbols for density-fitness
Build-Ids: 23e849d363f36739044dc573330ee88a56003c02
drwxr-xr-x root/root 0 2021-11-03 07:01 ./
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/lib/debug/.build-id/23/
-rw-r--r-- root/root 1769324 2021-11-03 07:01 ./usr/lib/debug/.build-id/23/e849d363f36739044dc573330ee88a56003c02.debug
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/share/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-11-03 07:01 ./usr/share/doc/density-fitness-dbgsym -> density-fitness
density-fitness_1.0.0-4_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 83784 bytes: control archive=1132 bytes.
1316 bytes, 23 lines control
290 bytes, 4 lines md5sums
Package: density-fitness
Version: 1.0.0-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 290
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.4), libcifpp1 (>= 1.0.1), libclipper2 (>= 2.1.20201109), libgcc-s1 (>= 3.5), libpdb-redo1 (>= 1.0.2-3~), libstdc++6 (>= 9), libzeep5.1 (>= 5.1.4)
Section: science
Priority: optional
Homepage: https://github.com/PDB-REDO/density-fitness
Description: Calculates per-residue electron density scores
The program density-fitness calculates electron density metrics,
for main- (includes CĪ² atom) and side-chain atoms of individual residues.
.
For this calculation, the program uses the structure model in either PDB
or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps.
If these maps are not readily available, the MTZ file and model can be used
to calculate maps clipper. Density-fitness support both X-ray and electron
diffraction data.
.
This program is essentially a reimplementation of edstats, a program
available from the CCP4 suite. However, the output now contains only the
RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm
and OPIA and no longer requires pre-calculated map coefficients.
drwxr-xr-x root/root 0 2021-11-03 07:01 ./
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/bin/
-rwxr-xr-x root/root 280584 2021-11-03 07:01 ./usr/bin/density-fitness
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/share/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/share/doc/density-fitness/
-rw-r--r-- root/root 328 2021-11-03 07:01 ./usr/share/doc/density-fitness/changelog.Debian.gz
-rw-r--r-- root/root 1873 2021-11-03 07:01 ./usr/share/doc/density-fitness/copyright
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/share/man/
drwxr-xr-x root/root 0 2021-11-03 07:01 ./usr/share/man/man1/
-rw-r--r-- root/root 2147 2021-11-03 07:01 ./usr/share/man/man1/density-fitness.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 20216
Build-Time: 313
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 485
Job: density-fitness_1.0.0-4
Machine Architecture: armhf
Package: density-fitness
Package-Time: 846
Source-Version: 1.0.0-4
Space: 20216
Status: successful
Version: 1.0.0-4
--------------------------------------------------------------------------------
Finished at 2021-11-04T21:32:34Z
Build needed 00:14:06, 20216k disc space