dawg →
1.2-4 →
armhf → 2021-11-14 05:39:07
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| dawg 1.2-4 (armhf) Sun, 14 Nov 2021 05:29:56 +0000 |
+==============================================================================+
Package: dawg
Version: 1.2-4
Source Version: 1.2-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-4b498645-0e32-41c9-84a5-d1caaffe59fb' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.5 MB]
Fetched 26.0 MB in 30s (853 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'dawg' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/dawg.git
Please use:
git clone https://salsa.debian.org/med-team/dawg.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 190 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main dawg 1.2-4 (dsc) [1928 B]
Get:2 http://172.17.0.1/private bookworm-staging/main dawg 1.2-4 (tar) [180 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main dawg 1.2-4 (diff) [7892 B]
Fetched 190 kB in 0s (662 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/dawg-cmWfQo/dawg-1.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/dawg-cmWfQo' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-2QzYw6/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-2QzYw6/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-2QzYw6/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2873 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 17 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12500 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, bison, flex
Filtered Build-Depends: debhelper-compat (= 13), cmake, bison, flex
dpkg-deb: building package 'sbuild-build-depends-dawg-dummy' in '/<<BUILDDIR>>/resolver-2QzYw6/apt_archive/sbuild-build-depends-dawg-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-dawg-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ Sources [504 B]
Get:5 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ Packages [583 B]
Fetched 2420 B in 1s (3270 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install dawg build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bison bsdextrautils cmake
cmake-data debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism
dwz emacsen-common file flex gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libcurl4 libdebhelper-perl
libelf1 libexpat1 libfile-stripnondeterminism-perl libicu67 libjsoncpp24
libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bison-doc cmake-doc ninja-build
dh-make flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
libfl-dev curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2
publicsuffix libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bison bsdextrautils cmake
cmake-data debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism
dwz emacsen-common file flex gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libarchive13 libbrotli1 libcurl4 libdebhelper-perl
libelf1 libexpat1 libfile-stripnondeterminism-perl libicu67 libjsoncpp24
libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sbuild-build-depends-dawg-dummy sensible-utils
0 upgraded, 52 newly installed, 0 to remove and 17 not upgraded.
Need to get 26.6 MB of archives.
After this operation, 106 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-2QzYw6/apt_archive ./ sbuild-build-depends-dawg-dummy 0.invalid.0 [872 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-4 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-1 [31.6 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf flex armhf 2.6.4-8 [412 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-5 [60.5 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-5 [475 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.5-1 [823 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf bison armhf 2:3.8.2+dfsg-1 [1114 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libcurl4 armhf 7.74.0-1.3 [305 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-3 [80.1 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libjsoncpp24 armhf 1.9.4-5 [67.4 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf librhash0 armhf 1.4.2-1 [141 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libuv1 armhf 1.42.0-1 [121 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.9 [11.2 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf cmake-data all 3.21.4-1 [1878 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf cmake armhf 3.21.4-1 [3462 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-2 [26.3 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-2 [15.5 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package bsdextrautils.
(Reading database ... 12500 files and directories currently installed.)
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Preparing to unpack .../45-libelf1_0.185-2_armhf.deb ...
Unpacking libelf1:armhf (0.185-2) ...
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Unpacking dwz (0.14-1) ...
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Unpacking gettext (0.21-4) ...
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Preparing to unpack .../48-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
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Preparing to unpack .../51-sbuild-build-depends-dawg-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-dawg-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.4.1-3) ...
Setting up libpipeline1:armhf (1.5.4-1) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up bsdextrautils (2.37.2-4) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.2) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.43.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libuv1:armhf (1.42.0-1) ...
Setting up emacsen-common (3.0.4) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up dh-elpa-helper (2.0.9) ...
Setting up libncurses6:armhf (6.2+20201114-4) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up libjsoncpp24:armhf (1.9.4-5) ...
Setting up sensible-utils (0.0.17) ...
Setting up librhash0:armhf (1.4.2-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.10.0-2) ...
Setting up cmake-data (3.21.4-1) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libprocps8:armhf (2:3.3.17-5) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-2) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-2) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up procps (2:3.3.17-5) ...
Setting up bison (2:3.8.2+dfsg-1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up libcurl4:armhf (7.74.0-1.3) ...
Setting up automake (1:1.16.5-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up flex (2.6.4-8) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up cmake (3.21.4-1) ...
Setting up debhelper (13.5.2) ...
Setting up sbuild-build-depends-dawg-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bison_2:3.8.2+dfsg-1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 cmake_3.21.4-1 cmake-data_3.21.4-1 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.78 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-elpa-helper_2.0.9 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 emacsen-common_3.0.4 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 flex_2.6.4-8 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl4_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-3 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libjsoncpp24_1.9.4-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.4-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libreadline8_8.1-2 librhash0_1.4.2-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libuv1_1.42.0-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dawg-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.eiFj6CGD/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 8 19:58:37 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./dawg_1.2-4.dsc
dpkg-source: info: extracting dawg in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking dawg_1.2.orig.tar.gz
dpkg-source: info: unpacking dawg_1.2-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-Add-missing-include-of-cstring.patch
dpkg-source: info: applying 0003-Don-t-override-install-directories.patch
dpkg-source: info: applying 0004-Fix-typo-in-help-text.patch
dpkg-source: info: applying 0005-Remove-Encoding-add-Keywords-to-dawg.desktop.patch
dpkg-source: info: applying 0006-relative-path-in-test-script.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-4b498645-0e32-41c9-84a5-d1caaffe59fb
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package dawg
dpkg-buildpackage: info: source version 1.2-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-DCMAKE_LIBRARY_PATH=arm-linux-gnueabihf \
-DCMAKE_DATA_DIR=/usr/share/doc/dawg
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_LIBRARY_PATH=arm-linux-gnueabihf -DCMAKE_DATA_DIR=/usr/share/doc/dawg ..
CMake Deprecation Warning at CMakeLists.txt:5 (CMAKE_MINIMUM_REQUIRED):
Compatibility with CMake < 2.8.12 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for bison
-- Looking for bison -- /usr/bin/bison
-- Looking for flex
-- Looking for flex -- /usr/bin/flex
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for process.h
-- Looking for process.h - not found
-- Looking for io.h
-- Looking for io.h - not found
-- Looking for getopt.h
-- Looking for getopt.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for getpid
-- Looking for getpid - found
-- Looking for _getpid
-- Looking for _getpid - not found
-- Looking for copysign
-- Looking for copysign - found
-- Looking for _copysign
-- Looking for _copysign - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for _snprintf
-- Looking for _snprintf - not found
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
CMAKE_LIBRARY_PATH
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/dawg.dir/build.make src/CMakeFiles/dawg.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 15%] Generating parser.tab.cpp, parser.tab.hpp
[ 15%] Generating lex.parser.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/bison --name-prefix=parser --defines --output-file=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/parser.tab.cpp /<<PKGBUILDDIR>>/src/parser.ypp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/flex -Pparser -o/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/lex.parser.cpp /<<PKGBUILDDIR>>/src/parser.lpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/dawg.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/dawg.dir/build.make src/CMakeFiles/dawg.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 38%] Building CXX object src/CMakeFiles/dawg.dir/dawg.cpp.o
[ 46%] Building CXX object src/CMakeFiles/dawg.dir/eigen.cpp.o
[ 46%] Building CXX object src/CMakeFiles/dawg.dir/matrix.cpp.o
[ 38%] Building CXX object src/CMakeFiles/dawg.dir/indel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -MD -MT src/CMakeFiles/dawg.dir/dawg.cpp.o -MF CMakeFiles/dawg.dir/dawg.cpp.o.d -o CMakeFiles/dawg.dir/dawg.cpp.o -c /<<PKGBUILDDIR>>/src/dawg.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -MD -MT src/CMakeFiles/dawg.dir/eigen.cpp.o -MF CMakeFiles/dawg.dir/eigen.cpp.o.d -o CMakeFiles/dawg.dir/eigen.cpp.o -c /<<PKGBUILDDIR>>/src/eigen.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -MD -MT src/CMakeFiles/dawg.dir/matrix.cpp.o -MF CMakeFiles/dawg.dir/matrix.cpp.o.d -o CMakeFiles/dawg.dir/matrix.cpp.o -c /<<PKGBUILDDIR>>/src/matrix.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -MD -MT src/CMakeFiles/dawg.dir/indel.cpp.o -MF CMakeFiles/dawg.dir/indel.cpp.o.d -o CMakeFiles/dawg.dir/indel.cpp.o -c /<<PKGBUILDDIR>>/src/indel.cpp
In file included from /<<PKGBUILDDIR>>/src/dawg.cpp:20:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/dawg.cpp:20:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/dawg.cpp:20:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/dawg.cpp:20:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/dawg.dir/output.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -MD -MT src/CMakeFiles/dawg.dir/output.cpp.o -MF CMakeFiles/dawg.dir/output.cpp.o.d -o CMakeFiles/dawg.dir/output.cpp.o -c /<<PKGBUILDDIR>>/src/output.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/indel.cpp:3:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 61%] Building CXX object src/CMakeFiles/dawg.dir/rand.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -MD -MT src/CMakeFiles/dawg.dir/rand.cpp.o -MF CMakeFiles/dawg.dir/rand.cpp.o.d -o CMakeFiles/dawg.dir/rand.cpp.o -c /<<PKGBUILDDIR>>/src/rand.cpp
In file included from /usr/include/c++/10/vector:67,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/indel.cpp:3:
/usr/include/c++/10/bits/stl_vector.h: In constructor 'UserModel::UserModel(const std::vector<double>&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 69%] Building CXX object src/CMakeFiles/dawg.dir/tree.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -MD -MT src/CMakeFiles/dawg.dir/tree.cpp.o -MF CMakeFiles/dawg.dir/tree.cpp.o.d -o CMakeFiles/dawg.dir/tree.cpp.o -c /<<PKGBUILDDIR>>/src/tree.cpp
[ 76%] Building CXX object src/CMakeFiles/dawg.dir/var.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -MD -MT src/CMakeFiles/dawg.dir/var.cpp.o -MF CMakeFiles/dawg.dir/var.cpp.o.d -o CMakeFiles/dawg.dir/var.cpp.o -c /<<PKGBUILDDIR>>/src/var.cpp
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/output.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/output.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/output.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/output.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/output.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/output.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/output.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/output.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/tree.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/tree.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/tree.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/tree.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/tree.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/tree.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/tree.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/tree.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/var.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/var.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/var.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/var.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/var.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/var.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/var.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/var.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/stl_vector.h: In member function 'bool DawgVar::GetVector(std::vector<T>&) [with T = double]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/vector.tcc: In function 'bool Execute()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 84%] Building CXX object src/CMakeFiles/dawg.dir/lex.parser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -I "/<<PKGBUILDDIR>>/src" -MD -MT src/CMakeFiles/dawg.dir/lex.parser.cpp.o -MF CMakeFiles/dawg.dir/lex.parser.cpp.o.d -o CMakeFiles/dawg.dir/lex.parser.cpp.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/lex.parser.cpp
[ 92%] Building CXX object src/CMakeFiles/dawg.dir/parser.tab.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -I "/<<PKGBUILDDIR>>/src" -MD -MT src/CMakeFiles/dawg.dir/parser.tab.cpp.o -MF CMakeFiles/dawg.dir/parser.tab.cpp.o.d -o CMakeFiles/dawg.dir/parser.tab.cpp.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/parser.tab.cpp
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.lpp:5:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.lpp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.lpp:5:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.lpp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.lpp:5:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.lpp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.lpp:5:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.lpp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.ypp:5:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.ypp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.ypp:5:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.ypp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.ypp:5:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.ypp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.ypp:5:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.ypp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
[100%] Linking CXX executable dawg
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/dawg.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/dawg.dir/dawg.cpp.o CMakeFiles/dawg.dir/eigen.cpp.o CMakeFiles/dawg.dir/indel.cpp.o CMakeFiles/dawg.dir/matrix.cpp.o CMakeFiles/dawg.dir/output.cpp.o CMakeFiles/dawg.dir/rand.cpp.o CMakeFiles/dawg.dir/tree.cpp.o CMakeFiles/dawg.dir/var.cpp.o CMakeFiles/dawg.dir/lex.parser.cpp.o CMakeFiles/dawg.dir/parser.tab.cpp.o -o dawg
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target dawg
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# FIXME: This test fails - but let the build pass anyway for the moment
# see https://github.com/reedacartwright/dawg/issues/56
cd tests && PATH=$PATH:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src sh test0.sh || true
2,3c2,3
< TCCTTGACCAGTTAGCAAGACGATATGCATCAAGTGCACTGGC---GTAAGTCTTTTTAC
< GCTGATCATA--TAGTCCGTATAGTCACTGAACGCCGTCCTCTCG
---
> AGGAACTGGTCACGTTCTGCTATACGTAGTTCACGTGACCGCATTCAGAAAAATGCGACT
> AGTATTGTGATCAGGCATATCAGTGACTTGCGGCAGGAGAGC
6,7c6,7
< TCGTTGGACAGT--GCAAGACGCTATGCATCAAGTGCACTGGCTAGGTAAGTGCGTTTAT
< GATGAGCACAACAGGTCCGGATAGTCCCTGAACGCTATACTCCCG
---
> AGCAACTTGTCACGTTCTGCGATACGTAGTTCACGTGACCGCATTCACGCAAACACTACT
> TGTGCT--GACCATGCATATCAGGGACTTGCGACATGTGGGC
10,11c10,11
< TCGA-CCCCAAA--TTAATACGTTAGTCATCAAGTGCACTGAC---GTAATAGCGTTTAT
< GATGATGAGTACTAGCCCGTGGAAACCCTAAAAGCGTTACCCCCG
---
> AGCATGGTGTCAAGTTCTGCGTTCAGTAGTTAACCAGACGGCATTAACGCTAATACATC-
> -GTGTT--GACCTACCAACGTACGGACTTGCGTAATGTGGTC
14,15c14,15
< TCGTTGAACAGT--GCAAGACGCTATGCATCAAGTGCACTGGC---GTAAGTGCGTTTAT
< GATGAACACAACTGGTCCGTATAGTCCCTGAACGCTGTACTCCCG
---
> AGCAACTTGTCACGTTCTGCGATACGTAGTTCACGTGACCGCATTCACGCAAATACTACT
> TGTGTT--GACCAGGCATATCAGGGACTTGCGACATGAGGGC
18,19c18,19
< TCGTACCACAGT--TCAAGACGCTAGGCATCAAGTGCACTGGC---GTAATTGCGTTTAT
< GATGGACACAACTAGTCCGTTGAATCCCTGAACGCTTTACCCCCG
---
> AGCATGGTGTCAAGTTCTGCGATCCGTAGTTCACGTGACCGCATTAACGCAAATACTACC
> TGTGTT--GATCAGGCAACTTAGGGACTTGCGAAATGGGGGC
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/dawg/ -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/dawg AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/bin/dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/applications/dawg.desktop
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/pixmaps/dawg.png
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example0.dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example1.dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example2.dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example3.dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example4.dawg
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
chmod -x debian/dawg/usr/share/doc/dawg/examples/*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/dawg/usr/bin/dawg contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/dawg/usr/bin/dawg was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'dawg-dbgsym' in '../dawg-dbgsym_1.2-4_armhf.deb'.
dpkg-deb: building package 'dawg' in '../dawg_1.2-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../dawg_1.2-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-11-14T05:39:01Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
dawg_1.2-4_armhf.changes:
-------------------------
Format: 1.8
Date: Mon, 08 Nov 2021 20:56:50 +0100
Source: dawg
Binary: dawg dawg-dbgsym
Architecture: armhf
Version: 1.2-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
dawg - simulate the evolution of recombinant DNA sequences
Changes:
dawg (1.2-4) unstable; urgency=medium
.
* Team upload.
* Fix watch file
* Standards-Version: 4.6.0 (routine-update)
* Document issues with test (see upstream issue #56)
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06d24678c57d4bf0ace0c355bbae5a6417e2a098 66152 dawg_1.2-4_armhf.deb
Checksums-Sha256:
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Files:
dbb6d4163a9d176b4264c9fb1fcc4a71 737992 debug optional dawg-dbgsym_1.2-4_armhf.deb
1cb5a9dada809bbff6f867ba54e965c6 5686 science optional dawg_1.2-4_armhf.buildinfo
ce6045514e2e8ec1a19cb49442842d69 66152 science optional dawg_1.2-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
dawg-dbgsym_1.2-4_armhf.deb
---------------------------
new Debian package, version 2.0.
size 737992 bytes: control archive=528 bytes.
354 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: dawg-dbgsym
Source: dawg
Version: 1.2-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 761
Depends: dawg (= 1.2-4)
Section: debug
Priority: optional
Description: debug symbols for dawg
Build-Ids: ef8cff8c84b41da50da48af1cec6c2db63d9cc1a
drwxr-xr-x root/root 0 2021-11-08 19:56 ./
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/lib/debug/.build-id/ef/
-rw-r--r-- root/root 768756 2021-11-08 19:56 ./usr/lib/debug/.build-id/ef/8cff8c84b41da50da48af1cec6c2db63d9cc1a.debug
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-11-08 19:56 ./usr/share/doc/dawg-dbgsym -> dawg
dawg_1.2-4_armhf.deb
--------------------
new Debian package, version 2.0.
size 66152 bytes: control archive=1452 bytes.
1016 bytes, 19 lines control
1422 bytes, 21 lines md5sums
Package: dawg
Version: 1.2-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 181
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: https://github.com/reedacartwright/dawg
Description: simulate the evolution of recombinant DNA sequences
DNA Assembly with Gaps (Dawg) is an application designed to simulate the
evolution of recombinant DNA sequences in continuous time based on the robust
general time reversible model with gamma and invariant rate heterogeneity and
a novel length-dependent model of gap formation. The application accepts
phylogenies in Newick format and can return the sequence of any node,
allowing for the exact evolutionary history to be recorded at the discretion
of users. Dawg records the gap history of every lineage to produce the true
alignment in the output. Many options are available to allow users to
customize their simulations and results.
drwxr-xr-x root/root 0 2021-11-08 19:56 ./
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/bin/
-rwxr-xr-x root/root 136376 2021-11-08 19:56 ./usr/bin/dawg
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/applications/
-rw-r--r-- root/root 292 2021-11-08 19:56 ./usr/share/applications/dawg.desktop
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/doc/dawg/
-rw-r--r-- root/root 206 2021-11-08 19:56 ./usr/share/doc/dawg/README.Debian
-rw-r--r-- root/root 348 2021-11-08 19:56 ./usr/share/doc/dawg/README.test
-rw-r--r-- root/root 735 2021-11-08 19:56 ./usr/share/doc/dawg/changelog.Debian.gz
-rw-r--r-- root/root 827 2009-04-26 05:14 ./usr/share/doc/dawg/changelog.gz
-rw-r--r-- root/root 5496 2021-11-08 19:56 ./usr/share/doc/dawg/copyright
-rw-r--r-- root/root 3062 2021-11-08 19:56 ./usr/share/doc/dawg/dawg.txt
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/doc/dawg/examples/
-rw-r--r-- root/root 219 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example0.dawg
-rw-r--r-- root/root 629 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example1.dawg
-rw-r--r-- root/root 336 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example2.dawg
-rw-r--r-- root/root 443 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example3.dawg
-rw-r--r-- root/root 338 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example4.dawg
-rw-r--r-- root/root 255 2009-04-26 05:14 ./usr/share/doc/dawg/news.txt
-rw-r--r-- root/root 4583 2009-04-26 05:14 ./usr/share/doc/dawg/readme.txt.gz
-rw-r--r-- root/root 528 2021-11-08 19:56 ./usr/share/doc/dawg/run-unit-test
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/doc/dawg/tests/
-rw-r--r-- root/root 236 2009-04-26 05:14 ./usr/share/doc/dawg/tests/test0.dawg
-rw-r--r-- root/root 540 2009-04-26 05:14 ./usr/share/doc/dawg/tests/test0.fasta
-rw-r--r-- root/root 113 2021-11-08 19:56 ./usr/share/doc/dawg/tests/test0.sh
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/man/
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/man/man1/
-rw-r--r-- root/root 1910 2021-11-08 19:56 ./usr/share/man/man1/dawg.1.gz
drwxr-xr-x root/root 0 2021-11-08 19:56 ./usr/share/pixmaps/
-rw-r--r-- root/root 2564 2009-04-26 05:14 ./usr/share/pixmaps/dawg.png
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 10320
Build-Time: 135
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 358
Job: dawg_1.2-4
Machine Architecture: armhf
Package: dawg
Package-Time: 545
Source-Version: 1.2-4
Space: 10320
Status: successful
Version: 1.2-4
--------------------------------------------------------------------------------
Finished at 2021-11-14T05:39:01Z
Build needed 00:09:05, 10320k disc space