dawg →
1.2-3 →
armhf → 2020-11-21 05:43:19
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| dawg 1.2-3 (armhf) Sat, 21 Nov 2020 05:32:00 +0000 |
+==============================================================================+
Package: dawg
Version: 1.2-3
Source Version: 1.2-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-cbbac934-d855-45b6-8ebd-86acbfaf7744' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
Fetched 24.8 MB in 26s (952 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'dawg' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/dawg.git
Please use:
git clone https://salsa.debian.org/med-team/dawg.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 190 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main dawg 1.2-3 (dsc) [1928 B]
Get:2 http://172.17.0.1/private bullseye-staging/main dawg 1.2-3 (tar) [180 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main dawg 1.2-3 (diff) [7748 B]
Fetched 190 kB in 0s (592 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/dawg-MiMBKm/dawg-1.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/dawg-MiMBKm' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Mso2k5/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Mso2k5/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Mso2k5/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2724 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12784 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, bison, flex
Filtered Build-Depends: debhelper-compat (= 13), cmake, bison, flex
dpkg-deb: building package 'sbuild-build-depends-dawg-dummy' in '/<<BUILDDIR>>/resolver-Mso2k5/apt_archive/sbuild-build-depends-dawg-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-dawg-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ Sources [504 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ Packages [583 B]
Fetched 2420 B in 1s (3013 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install dawg build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bison cmake cmake-data debhelper
dh-autoreconf dh-strip-nondeterminism dwz file flex gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libarchive13 libbrotli1
libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libjsoncpp1
libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bison-doc cmake-doc ninja-build
dh-make flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
libfl-dev curl | wget | lynx ca-certificates libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 publicsuffix
libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bison cmake cmake-data debhelper
dh-autoreconf dh-strip-nondeterminism dwz file flex gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libarchive13 libbrotli1
libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libjsoncpp1
libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8
libpsl5 librhash0 librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sbuild-build-depends-dawg-dummy
0 upgraded, 50 newly installed, 0 to remove and 5 not upgraded.
Need to get 26.6 MB of archives.
After this operation, 104 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Mso2k5/apt_archive ./ sbuild-build-depends-dawg-dummy 0.invalid.0 [872 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf flex armhf 2.6.4-8 [412 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20200918-1 [79.5 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf bison armhf 2:3.7.3+dfsg-1 [1039 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.18.4-1+rpi1 [1725 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.2 [578 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2 [259 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.41.0-3 [63.0 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.0-1 [133 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.40.0-1 [118 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.18.4-1+rpi1 [3113 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.2.1 [188 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.2-1 [1176 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.2.1 [1007 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking libcroco3:armhf (0.6.13-1) ...
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Unpacking gettext (0.19.8.1-10) ...
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Unpacking intltool-debian (0.35.0+20060710.5) ...
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Preparing to unpack .../47-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
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Unpacking debhelper (13.2.1) ...
Selecting previously unselected package sbuild-build-depends-dawg-dummy.
Preparing to unpack .../49-sbuild-build-depends-dawg-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-dawg-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.10-1) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up libicu67:armhf (67.1-4) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.2-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.2.1) ...
Setting up libbrotli1:armhf (1.0.9-2) ...
Setting up libnghttp2-14:armhf (1.41.0-3) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up autotools-dev (20180224.1) ...
Setting up libuv1:armhf (1.40.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20200918-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up librhash0:armhf (1.4.0-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up cmake-data (3.18.4-1+rpi1) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.2) ...
Setting up libprocps8:armhf (2:3.3.16-5) ...
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libtool (2.4.6-14) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up m4 (1.4.18-4) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up bison (2:3.7.3+dfsg-1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up libcurl4:armhf (7.72.0-1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up flex (2.6.4-8) ...
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up cmake (3.18.4-1+rpi1) ...
Setting up po-debconf (1.0.21) ...
Setting up debhelper (13.2.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-dawg-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-4+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bison_2:3.7.3+dfsg-1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 cmake_3.18.4-1+rpi1 cmake-data_3.18.4-1+rpi1 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 flex_2.6.4-8 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-6+rpi1+b1 gcc-8-base_8.4.0-4+rpi1+b1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.17-10 libacl1_2.2.53-8 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblkid1_2.36-3 libboost-iostreams1.71.0_1.71.0-7 libbrotli1_1.0.9-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-4+rpi1 libc6_2.31-4+rpi1 libc6-dev_2.31-4+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-16+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcurl4_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.2-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10+b3 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-3 libisl22_0.22.1-1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-10+b3 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10+b3 libkrb5support0_1.17-10+b3 libksba8_1.4.0-2 libldap-2.4-2_2.4.56+dfsg-1+rpi1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20200918-1 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libreadline8_8.1~rc2-2 librhash0_1.4.0-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-2+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libuv1_1.40.0-1 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.2 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 procps_2:3.3.16-5 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dawg-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.XsFatlMk/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 16 09:30:50 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./dawg_1.2-3.dsc
dpkg-source: info: extracting dawg in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking dawg_1.2.orig.tar.gz
dpkg-source: info: unpacking dawg_1.2-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-Add-missing-include-of-cstring.patch
dpkg-source: info: applying 0003-Don-t-override-install-directories.patch
dpkg-source: info: applying 0004-Fix-typo-in-help-text.patch
dpkg-source: info: applying 0005-Remove-Encoding-add-Keywords-to-dawg.desktop.patch
dpkg-source: info: applying 0006-relative-path-in-test-script.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-cbbac934-d855-45b6-8ebd-86acbfaf7744
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package dawg
dpkg-buildpackage: info: source version 1.2-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-DCMAKE_LIBRARY_PATH=arm-linux-gnueabihf \
-DCMAKE_DATA_DIR=/usr/share/doc/dawg
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_LIBRARY_PATH=arm-linux-gnueabihf -DCMAKE_DATA_DIR=/usr/share/doc/dawg ..
-- The C compiler identification is GNU 10.2.0
-- The CXX compiler identification is GNU 10.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for bison
-- Looking for bison -- /usr/bin/bison
-- Looking for flex
-- Looking for flex -- /usr/bin/flex
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for process.h
-- Looking for process.h - not found
-- Looking for io.h
-- Looking for io.h - not found
-- Looking for getopt.h
-- Looking for getopt.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for getpid
-- Looking for getpid - found
-- Looking for _getpid
-- Looking for _getpid - not found
-- Looking for copysign
-- Looking for copysign - found
-- Looking for _copysign
-- Looking for _copysign - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for _snprintf
-- Looking for _snprintf - not found
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
CMAKE_LIBRARY_PATH
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/dawg.dir/build.make src/CMakeFiles/dawg.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 15%] Generating parser.tab.cpp, parser.tab.hpp
[ 15%] Generating lex.parser.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/flex -Pparser -o/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/lex.parser.cpp /<<PKGBUILDDIR>>/src/parser.lpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/bison --name-prefix=parser --defines --output-file=/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/parser.tab.cpp /<<PKGBUILDDIR>>/src/parser.ypp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/CMakeFiles/dawg.dir/DependInfo.cmake --color=
Scanning dependencies of target dawg
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/dawg.dir/build.make src/CMakeFiles/dawg.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 30%] Building CXX object src/CMakeFiles/dawg.dir/eigen.cpp.o
[ 30%] Building CXX object src/CMakeFiles/dawg.dir/dawg.cpp.o
[ 38%] Building CXX object src/CMakeFiles/dawg.dir/indel.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -o CMakeFiles/dawg.dir/dawg.cpp.o -c /<<PKGBUILDDIR>>/src/dawg.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -o CMakeFiles/dawg.dir/eigen.cpp.o -c /<<PKGBUILDDIR>>/src/eigen.cpp
[ 46%] Building CXX object src/CMakeFiles/dawg.dir/matrix.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -o CMakeFiles/dawg.dir/indel.cpp.o -c /<<PKGBUILDDIR>>/src/indel.cpp
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -o CMakeFiles/dawg.dir/matrix.cpp.o -c /<<PKGBUILDDIR>>/src/matrix.cpp
In file included from /<<PKGBUILDDIR>>/src/dawg.cpp:20:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/dawg.cpp:20:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/dawg.cpp:20:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/dawg.cpp:20:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/indel.cpp:3:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 53%] Building CXX object src/CMakeFiles/dawg.dir/output.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -o CMakeFiles/dawg.dir/output.cpp.o -c /<<PKGBUILDDIR>>/src/output.cpp
In file included from /usr/include/c++/10/vector:67,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/indel.cpp:3:
/usr/include/c++/10/bits/stl_vector.h: In constructor 'UserModel::UserModel(const std::vector<double>&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 61%] Building CXX object src/CMakeFiles/dawg.dir/rand.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -o CMakeFiles/dawg.dir/rand.cpp.o -c /<<PKGBUILDDIR>>/src/rand.cpp
[ 69%] Building CXX object src/CMakeFiles/dawg.dir/tree.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -o CMakeFiles/dawg.dir/tree.cpp.o -c /<<PKGBUILDDIR>>/src/tree.cpp
[ 76%] Building CXX object src/CMakeFiles/dawg.dir/var.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -o CMakeFiles/dawg.dir/var.cpp.o -c /<<PKGBUILDDIR>>/src/var.cpp
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/output.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/output.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/output.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/output.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/output.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/output.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/output.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/output.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/tree.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/tree.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/tree.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/tree.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/tree.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/tree.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/tree.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/tree.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/var.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/var.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/var.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/var.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/var.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/var.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/var.cpp:4:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/var.cpp:3:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/stl_vector.h: In member function 'bool DawgVar::GetVector(std::vector<T>&) [with T = double]':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 84%] Building CXX object src/CMakeFiles/dawg.dir/lex.parser.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -I "/<<PKGBUILDDIR>>/src" -o CMakeFiles/dawg.dir/lex.parser.cpp.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/lex.parser.cpp
[ 92%] Building CXX object src/CMakeFiles/dawg.dir/parser.tab.cpp.o
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 "-DPACKAGE_STRING=\"dawg 1.2-release\"" "-DPACKAGE_BUGREPORT=\"reed@scit.us\"" -I "/<<PKGBUILDDIR>>/src" -o CMakeFiles/dawg.dir/parser.tab.cpp.o -c /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src/parser.tab.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/vector.tcc: In function 'bool Execute()':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<PKGBUILDDIR>>/src/dawg.h:42,
from /<<PKGBUILDDIR>>/src/dawg.cpp:19:
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.lpp:5:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.lpp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.lpp:5:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.lpp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.lpp:5:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.lpp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.lpp:5:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.lpp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.ypp:5:
/<<PKGBUILDDIR>>/src/tree.h:17:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
17 | std::auto_ptr<NewickNode> m_pSib;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.ypp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.ypp:5:
/<<PKGBUILDDIR>>/src/tree.h:18:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
18 | std::auto_ptr<NewickNode> m_pSub;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.ypp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.ypp:5:
/<<PKGBUILDDIR>>/src/tree.h:199:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
199 | std::auto_ptr<IndelModel> m_pInsertionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.ypp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/var.h:7,
from /<<PKGBUILDDIR>>/src/parser.ypp:5:
/<<PKGBUILDDIR>>/src/tree.h:200:7: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
200 | std::auto_ptr<IndelModel> m_pDeletionModel;
| ^~~~~~~~
In file included from /usr/include/c++/10/bits/locale_conv.h:41,
from /usr/include/c++/10/locale:43,
from /usr/include/c++/10/iomanip:43,
from /<<PKGBUILDDIR>>/src/dawg.h:47,
from /<<PKGBUILDDIR>>/src/parser.ypp:4:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
[100%] Linking CXX executable dawg
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/dawg.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/dawg.dir/dawg.cpp.o CMakeFiles/dawg.dir/eigen.cpp.o CMakeFiles/dawg.dir/indel.cpp.o CMakeFiles/dawg.dir/matrix.cpp.o CMakeFiles/dawg.dir/output.cpp.o CMakeFiles/dawg.dir/rand.cpp.o CMakeFiles/dawg.dir/tree.cpp.o CMakeFiles/dawg.dir/var.cpp.o CMakeFiles/dawg.dir/lex.parser.cpp.o CMakeFiles/dawg.dir/parser.tab.cpp.o -o dawg
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target dawg
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# FIXME: This test fails - but let the build pass anyway for the moment
cd tests && PATH=$PATH:/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/src sh test0.sh || true
2,3c2,3
< TCCTTGACCAGTTAGCAAGACGATATGCATCAAGTGCACTGGC---GTAAGTCTTTTTAC
< GCTGATCATA--TAGTCCGTATAGTCACTGAACGCCGTCCTCTCG
---
> AGGAACTGGTCACGTTCTGCTATACGTAGTTCACGTGACCGCATTCAGAAAAATGCGACT
> AGTATTGTGATCAGGCATATCAGTGACTTGCGGCAGGAGAGC
6,7c6,7
< TCGTTGGACAGT--GCAAGACGCTATGCATCAAGTGCACTGGCTAGGTAAGTGCGTTTAT
< GATGAGCACAACAGGTCCGGATAGTCCCTGAACGCTATACTCCCG
---
> AGCAACTTGTCACGTTCTGCGATACGTAGTTCACGTGACCGCATTCACGCAAACACTACT
> TGTGCT--GACCATGCATATCAGGGACTTGCGACATGTGGGC
10,11c10,11
< TCGA-CCCCAAA--TTAATACGTTAGTCATCAAGTGCACTGAC---GTAATAGCGTTTAT
< GATGATGAGTACTAGCCCGTGGAAACCCTAAAAGCGTTACCCCCG
---
> AGCATGGTGTCAAGTTCTGCGTTCAGTAGTTAACCAGACGGCATTAACGCTAATACATC-
> -GTGTT--GACCTACCAACGTACGGACTTGCGTAATGTGGTC
14,15c14,15
< TCGTTGAACAGT--GCAAGACGCTATGCATCAAGTGCACTGGC---GTAAGTGCGTTTAT
< GATGAACACAACTGGTCCGTATAGTCCCTGAACGCTGTACTCCCG
---
> AGCAACTTGTCACGTTCTGCGATACGTAGTTCACGTGACCGCATTCACGCAAATACTACT
> TGTGTT--GACCAGGCATATCAGGGACTTGCGACATGAGGGC
18,19c18,19
< TCGTACCACAGT--TCAAGACGCTAGGCATCAAGTGCACTGGC---GTAATTGCGTTTAT
< GATGGACACAACTAGTCCGTTGAATCCCTGAACGCTTTACCCCCG
---
> AGCATGGTGTCAAGTTCTGCGATCCGTAGTTCACGTGACCGCATTAACGCAAATACTACC
> TGTGTT--GATCAGGCAACTTAGGGACTTGCGAAATGGGGGC
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/dawg AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/bin/dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/applications/dawg.desktop
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/pixmaps/dawg.png
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example0.dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example1.dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example2.dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example3.dawg
-- Installing: /<<PKGBUILDDIR>>/debian/dawg/usr/share/doc/dawg/examples/example4.dawg
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
chmod -x debian/dawg/usr/share/doc/dawg/examples/*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/dawg/usr/bin/dawg contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/dawg/usr/bin/dawg was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'dawg' in '../dawg_1.2-3_armhf.deb'.
dpkg-deb: building package 'dawg-dbgsym' in '../dawg-dbgsym_1.2-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../dawg_1.2-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-11-21T05:43:10Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
dawg_1.2-3_armhf.changes:
-------------------------
Format: 1.8
Date: Mon, 16 Nov 2020 10:20:01 +0100
Source: dawg
Binary: dawg dawg-dbgsym
Architecture: armhf
Version: 1.2-3
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
dawg - simulate the evolution of recombinant DNA sequences
Changes:
dawg (1.2-3) unstable; urgency=medium
.
* Team upload.
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
update)
* autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
Checksums-Sha1:
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40b38e83d2a86323cb64a8e0110e3f57ddc72e8a 5694 dawg_1.2-3_armhf.buildinfo
a3d87182f38ec1b1998d8fb278a6e6a20420ecc6 65992 dawg_1.2-3_armhf.deb
Checksums-Sha256:
03203370bf83bc2b76218f67fe9ec2e9cd9c0f54e5cb3488aed4cccf3295f196 736584 dawg-dbgsym_1.2-3_armhf.deb
290cbfdccbf47095108f61c8932bdec6f118ed0b96006e4a8d9409432b9ccb27 5694 dawg_1.2-3_armhf.buildinfo
da3daeb2bfb7d6a6365155c2e733f6d3cb3b27bdc357167b39cce49013b39b55 65992 dawg_1.2-3_armhf.deb
Files:
b341f0fba528624e4c5087e88d070aa5 736584 debug optional dawg-dbgsym_1.2-3_armhf.deb
7f3feac722b615bd418bdd0ecc6f5f5e 5694 science optional dawg_1.2-3_armhf.buildinfo
35748350e6fb98171e007efc25d01c83 65992 science optional dawg_1.2-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
dawg-dbgsym_1.2-3_armhf.deb
---------------------------
new Debian package, version 2.0.
size 736584 bytes: control archive=528 bytes.
354 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: dawg-dbgsym
Source: dawg
Version: 1.2-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 760
Depends: dawg (= 1.2-3)
Section: debug
Priority: optional
Description: debug symbols for dawg
Build-Ids: c37908c7cd5c2bf7da98d347a9bedcc5077092ef
drwxr-xr-x root/root 0 2020-11-16 09:20 ./
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/lib/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/lib/debug/.build-id/c3/
-rw-r--r-- root/root 767612 2020-11-16 09:20 ./usr/lib/debug/.build-id/c3/7908c7cd5c2bf7da98d347a9bedcc5077092ef.debug
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-11-16 09:20 ./usr/share/doc/dawg-dbgsym -> dawg
dawg_1.2-3_armhf.deb
--------------------
new Debian package, version 2.0.
size 65992 bytes: control archive=1452 bytes.
1016 bytes, 19 lines control
1422 bytes, 21 lines md5sums
Package: dawg
Version: 1.2-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 181
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: https://github.com/reedacartwright/dawg
Description: simulate the evolution of recombinant DNA sequences
DNA Assembly with Gaps (Dawg) is an application designed to simulate the
evolution of recombinant DNA sequences in continuous time based on the robust
general time reversible model with gamma and invariant rate heterogeneity and
a novel length-dependent model of gap formation. The application accepts
phylogenies in Newick format and can return the sequence of any node,
allowing for the exact evolutionary history to be recorded at the discretion
of users. Dawg records the gap history of every lineage to produce the true
alignment in the output. Many options are available to allow users to
customize their simulations and results.
drwxr-xr-x root/root 0 2020-11-16 09:20 ./
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/bin/
-rwxr-xr-x root/root 136376 2020-11-16 09:20 ./usr/bin/dawg
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/applications/
-rw-r--r-- root/root 292 2020-11-16 09:20 ./usr/share/applications/dawg.desktop
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/doc/dawg/
-rw-r--r-- root/root 206 2020-11-16 09:20 ./usr/share/doc/dawg/README.Debian
-rw-r--r-- root/root 348 2020-11-16 09:20 ./usr/share/doc/dawg/README.test
-rw-r--r-- root/root 676 2020-11-16 09:20 ./usr/share/doc/dawg/changelog.Debian.gz
-rw-r--r-- root/root 827 2009-04-26 05:14 ./usr/share/doc/dawg/changelog.gz
-rw-r--r-- root/root 5496 2020-11-16 09:20 ./usr/share/doc/dawg/copyright
-rw-r--r-- root/root 3062 2020-11-16 09:20 ./usr/share/doc/dawg/dawg.txt
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/doc/dawg/examples/
-rw-r--r-- root/root 219 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example0.dawg
-rw-r--r-- root/root 629 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example1.dawg
-rw-r--r-- root/root 336 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example2.dawg
-rw-r--r-- root/root 443 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example3.dawg
-rw-r--r-- root/root 338 2009-04-26 05:14 ./usr/share/doc/dawg/examples/example4.dawg
-rw-r--r-- root/root 255 2009-04-26 05:14 ./usr/share/doc/dawg/news.txt
-rw-r--r-- root/root 4583 2009-04-26 05:14 ./usr/share/doc/dawg/readme.txt.gz
-rw-r--r-- root/root 323 2020-11-16 09:20 ./usr/share/doc/dawg/run-unit-test
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/doc/dawg/tests/
-rw-r--r-- root/root 236 2009-04-26 05:14 ./usr/share/doc/dawg/tests/test0.dawg
-rw-r--r-- root/root 540 2009-04-26 05:14 ./usr/share/doc/dawg/tests/test0.fasta
-rw-r--r-- root/root 113 2020-11-16 09:20 ./usr/share/doc/dawg/tests/test0.sh
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/man/
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/man/man1/
-rw-r--r-- root/root 1910 2020-11-16 09:20 ./usr/share/man/man1/dawg.1.gz
drwxr-xr-x root/root 0 2020-11-16 09:20 ./usr/share/pixmaps/
-rw-r--r-- root/root 2564 2009-04-26 05:14 ./usr/share/pixmaps/dawg.png
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 10200
Build-Time: 188
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 433
Job: dawg_1.2-3
Machine Architecture: armhf
Package: dawg
Package-Time: 670
Source-Version: 1.2-3
Space: 10200
Status: successful
Version: 1.2-3
--------------------------------------------------------------------------------
Finished at 2020-11-21T05:43:10Z
Build needed 00:11:10, 10200k disc space