dascrubber →
1.1-4 →
armhf → 2021-09-07 05:49:31
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| dascrubber 1.1-4 (armhf) Tue, 07 Sep 2021 05:41:14 +0000 |
+==============================================================================+
Package: dascrubber
Version: 1.1-4
Source Version: 1.1-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-22afa420-fc03-49c9-a167-386aca9e6148' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.7 MB in 30s (864 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'dascrubber' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/dascrubber.git
Please use:
git clone https://salsa.debian.org/med-team/dascrubber.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 123 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main dascrubber 1.1-4 (dsc) [2004 B]
Get:2 http://172.17.0.1/private bookworm-staging/main dascrubber 1.1-4 (tar) [117 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main dascrubber 1.1-4 (diff) [4408 B]
Fetched 123 kB in 0s (527 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/dascrubber-plkcXw/dascrubber-1.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/dascrubber-plkcXw' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-AGfFhP/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-AGfFhP/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-AGfFhP/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2855 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 66 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (23.2 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13)
Filtered Build-Depends: debhelper-compat (= 13)
dpkg-deb: building package 'sbuild-build-depends-dascrubber-dummy' in '/<<BUILDDIR>>/resolver-AGfFhP/apt_archive/sbuild-build-depends-dascrubber-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-dascrubber-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ Sources [492 B]
Get:5 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ Packages [572 B]
Fetched 2397 B in 1s (3221 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install dascrubber build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sbuild-build-depends-dascrubber-dummy sensible-utils
0 upgraded, 32 newly installed, 0 to remove and 66 not upgraded.
Need to get 17.5 MB of archives.
After this operation, 64.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-AGfFhP/apt_archive ./ sbuild-build-depends-dascrubber-dummy 0.invalid.0 [856 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.1 [192 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.1 [1056 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 17.5 MB in 8s (2274 kB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.37.2-1_armhf.deb ...
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Unpacking sbuild-build-depends-dascrubber-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up bsdextrautils (2.37.2-1) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.5.1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-4) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up sensible-utils (0.0.17) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.7) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.5.1) ...
Setting up sbuild-build-depends-dascrubber-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.5.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-8 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.0-5 libisl23_0.23-1 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dascrubber-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.17 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.xKZcgOM3/trustedkeys.kbx': General error
gpgv: Signature made Wed Sep 1 13:37:43 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./dascrubber_1.1-4.dsc
dpkg-source: info: extracting dascrubber in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking dascrubber_1.1.orig.tar.gz
dpkg-source: info: unpacking dascrubber_1.1-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying destdir-install.patch
dpkg-source: info: applying compiler-flags.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-22afa420-fc03-49c9-a167-386aca9e6148
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package dascrubber
dpkg-buildpackage: info: source version 1.1-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f DAScover DASqv DAStrim DASpatch DASedit DASmap DASrealign REPcover REPqv REPtrim
rm -fr *.dSYM
rm -f scrubber.tar.gz
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAScover.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DAScover
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASqv.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASqv
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAStrim.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DAStrim
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASpatch.c align.h align.c DB.c DB.h QV.c QV.h -lm -o DASpatch
DAStrim.c: In function 'GAPS':
DAStrim.c:1456:42: warning: 'lidx' may be used uninitialized in this function [-Wmaybe-uninitialized]
1456 | if (Lidx >= 0 && ovls[Lidx].path.aepos + (blen-ovls[Lidx].path.bepos)
| ^
DAStrim.c:1356:9: note: 'lidx' was declared here
1356 | int lidx, ridx, sidx, Lidx, Ridx;
| ^~~~
DAStrim.c:1444:42: warning: 'ridx' may be used uninitialized in this function [-Wmaybe-uninitialized]
1444 | if (Ridx >= 0 && ovls[Ridx].path.abpos - ovls[Ridx].path.bbpos
| ^
DAStrim.c:1356:15: note: 'ridx' was declared here
1356 | int lidx, ridx, sidx, Lidx, Ridx;
| ^~~~
align.c: In function 'Compute_Alignment':
align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized]
4424 | n = L/sizeof(uint16);
| ~^~~~~~~~~~~~~~~
align.c: In function 'Compute_Alignment':
align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized]
4424 | n = L/sizeof(uint16);
| ~^~~~~~~~~~~~~~~
align.c: In function 'Compute_Alignment':
align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized]
4424 | n = L/sizeof(uint16);
| ~^~~~~~~~~~~~~~~
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
align.c: In function 'Compute_Alignment':
align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized]
4424 | n = L/sizeof(uint16);
| ~^~~~~~~~~~~~~~~
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASedit.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASedit
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASmap.c DB.c DB.h QV.c QV.h -lm -o DASmap
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DASrealign.c align.c align.h DB.c DB.h QV.c QV.h -lm -o DASrealign
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPcover.c DB.c DB.h QV.c QV.h -lm -o REPcover
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPqv.c DB.c DB.h QV.c QV.h -lm -o REPqv
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
align.c: In function 'Compute_Alignment':
align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized]
4424 | n = L/sizeof(uint16);
| ~^~~~~~~~~~~~~~~
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now REPtrim.c DB.c DB.h QV.c QV.h -lm -o REPtrim
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
align.c: In function 'Compute_Alignment':
align.c:4424:17: warning: 'L' may be used uninitialized in this function [-Wmaybe-uninitialized]
4424 | n = L/sizeof(uint16);
| ~^~~~~~~~~~~~~~~
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
DB.c: In function 'Trim_DB':
DB.c:691:14: warning: 'css' may be used uninitialized in this function [-Wmaybe-uninitialized]
691 | if (css)
| ^
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
QV.c: In function 'Build_Table':
QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
127 | { uint64 symbol = (uint64) (node->lft);
| ^
QV.c: In function 'Huffman':
QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
174 | node[value].lft = (HTree *) (uint64) i;
| ^
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/dascrubber AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
install -d /<<PKGBUILDDIR>>/debian/dascrubber/usr/bin
install DAScover DASqv DAStrim DASpatch DASedit DASmap DASrealign REPcover REPqv REPtrim /<<PKGBUILDDIR>>/debian/dascrubber/usr/bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/dascrubber/usr/share/man/man1
for command in /<<PKGBUILDDIR>>/debian/dascrubber/usr/bin/*; \
do \
ln -s dascrubber.1 \
/<<PKGBUILDDIR>>/debian/dascrubber/usr/share/man/man1/$(basename $command).1; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/dascrubber/usr/bin/DASmap debian/dascrubber/usr/bin/REPqv debian/dascrubber/usr/bin/DAScover debian/dascrubber/usr/bin/DASedit debian/dascrubber/usr/bin/DASrealign debian/dascrubber/usr/bin/DAStrim debian/dascrubber/usr/bin/REPcover debian/dascrubber/usr/bin/REPtrim debian/dascrubber/usr/bin/DASpatch debian/dascrubber/usr/bin/DASqv were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'dascrubber' in '../dascrubber_1.1-4_armhf.deb'.
dpkg-deb: building package 'dascrubber-dbgsym' in '../dascrubber-dbgsym_1.1-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../dascrubber_1.1-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-07T05:49:21Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
dascrubber_1.1-4_armhf.changes:
-------------------------------
Format: 1.8
Date: Wed, 01 Sep 2021 15:33:47 +0200
Source: dascrubber
Binary: dascrubber dascrubber-dbgsym
Architecture: armhf
Version: 1.1-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
dascrubber - alignment-based scrubbing pipeline for DNA sequencing reads
Changes:
dascrubber (1.1-4) unstable; urgency=medium
.
* Really fix watch file
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Files:
3a00242bd220b1441e6bed77253d26e6 1325308 debug optional dascrubber-dbgsym_1.1-4_armhf.deb
5884f6f86ad8f1a64776542509064695 4846 science optional dascrubber_1.1-4_armhf.buildinfo
fbf14cdda4e8280634edb593f52eff7a 118364 science optional dascrubber_1.1-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
dascrubber-dbgsym_1.1-4_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 1325308 bytes: control archive=1044 bytes.
748 bytes, 12 lines control
1150 bytes, 11 lines md5sums
Package: dascrubber-dbgsym
Source: dascrubber
Version: 1.1-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1492
Depends: dascrubber (= 1.1-4)
Section: debug
Priority: optional
Description: debug symbols for dascrubber
Build-Ids: 42c40cd7ae0ca2dd2d97ba919d3d65e37d0cbf52 5bbd3d42678a6d2f22edc5dab7c1167ba1007fcc 6055569f9296225a7fe68c505f869051082eb1ef 6c6430466d9d5d019be9c8d4284661d2ff7f4ff1 7033cd0f2d545d4f758e0a4394386d65d4a3aea9 a11089fa27d7c65b6bccbb12957847535c8eaa2b a37a48022e1fd6bc8b34197a98a9f6bc3562b6a5 bb2f47ffb41aecade4d974b2d6cf719a74ec5279 cd12c93128663a4c41101949ffdbf3ad1d9f31c9 cd594c0c2ae2d0db3133bc7db727cf26acc23c2e
drwxr-xr-x root/root 0 2021-09-01 13:33 ./
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/42/
-rw-r--r-- root/root 85996 2021-09-01 13:33 ./usr/lib/debug/.build-id/42/c40cd7ae0ca2dd2d97ba919d3d65e37d0cbf52.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/5b/
-rw-r--r-- root/root 84172 2021-09-01 13:33 ./usr/lib/debug/.build-id/5b/bd3d42678a6d2f22edc5dab7c1167ba1007fcc.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/60/
-rw-r--r-- root/root 186436 2021-09-01 13:33 ./usr/lib/debug/.build-id/60/55569f9296225a7fe68c505f869051082eb1ef.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/6c/
-rw-r--r-- root/root 209304 2021-09-01 13:33 ./usr/lib/debug/.build-id/6c/6430466d9d5d019be9c8d4284661d2ff7f4ff1.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root 185544 2021-09-01 13:33 ./usr/lib/debug/.build-id/70/33cd0f2d545d4f758e0a4394386d65d4a3aea9.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/a1/
-rw-r--r-- root/root 83196 2021-09-01 13:33 ./usr/lib/debug/.build-id/a1/1089fa27d7c65b6bccbb12957847535c8eaa2b.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/a3/
-rw-r--r-- root/root 187424 2021-09-01 13:33 ./usr/lib/debug/.build-id/a3/7a48022e1fd6bc8b34197a98a9f6bc3562b6a5.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/bb/
-rw-r--r-- root/root 195940 2021-09-01 13:33 ./usr/lib/debug/.build-id/bb/2f47ffb41aecade4d974b2d6cf719a74ec5279.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.build-id/cd/
-rw-r--r-- root/root 85120 2021-09-01 13:33 ./usr/lib/debug/.build-id/cd/12c93128663a4c41101949ffdbf3ad1d9f31c9.debug
-rw-r--r-- root/root 187132 2021-09-01 13:33 ./usr/lib/debug/.build-id/cd/594c0c2ae2d0db3133bc7db727cf26acc23c2e.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 9788 2021-09-01 13:33 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/dascrubber.debug
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/share/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/doc/dascrubber-dbgsym -> dascrubber
dascrubber_1.1-4_armhf.deb
--------------------------
new Debian package, version 2.0.
size 118364 bytes: control archive=1232 bytes.
783 bytes, 19 lines control
934 bytes, 16 lines md5sums
Package: dascrubber
Version: 1.1-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 983
Depends: libc6 (>= 2.7)
Suggests: daligner, dazzdb
Section: science
Priority: optional
Homepage: https://dazzlerblog.wordpress.com/
Description: alignment-based scrubbing pipeline for DNA sequencing reads
The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed
to
* be continuous stretches of the underlying genome (i.e. no unremoved
adapters and not chimers)
* have no very low quality stretches (i.e. the error rate never exceeds some
reasonable maximum, 20% or so in the case of Pacbio data).
Its secondary goal is to do so with the minimum removal of data and splitting
of reads.
drwxr-xr-x root/root 0 2021-09-01 13:33 ./
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/bin/
-rwxr-xr-x root/root 120444 2021-09-01 13:33 ./usr/bin/DAScover
-rwxr-xr-x root/root 120440 2021-09-01 13:33 ./usr/bin/DASedit
-rwxr-xr-x root/root 54944 2021-09-01 13:33 ./usr/bin/DASmap
-rwxr-xr-x root/root 120448 2021-09-01 13:33 ./usr/bin/DASpatch
-rwxr-xr-x root/root 120448 2021-09-01 13:33 ./usr/bin/DASqv
-rwxr-xr-x root/root 124552 2021-09-01 13:33 ./usr/bin/DASrealign
-rwxr-xr-x root/root 140928 2021-09-01 13:33 ./usr/bin/DAStrim
-rwxr-xr-x root/root 54888 2021-09-01 13:33 ./usr/bin/REPcover
-rwxr-xr-x root/root 54888 2021-09-01 13:33 ./usr/bin/REPqv
-rwxr-xr-x root/root 58984 2021-09-01 13:33 ./usr/bin/REPtrim
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/share/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/share/doc/dascrubber/
-rw-r--r-- root/root 5490 2018-05-13 04:51 ./usr/share/doc/dascrubber/README.md.gz
-rw-r--r-- root/root 278 2021-09-01 13:33 ./usr/share/doc/dascrubber/README.test
-rw-r--r-- root/root 934 2021-09-01 13:33 ./usr/share/doc/dascrubber/changelog.Debian.gz
-rw-r--r-- root/root 1771 2021-09-01 13:33 ./usr/share/doc/dascrubber/copyright
-rw-r--r-- root/root 943 2021-09-01 13:33 ./usr/share/doc/dascrubber/run-unit-test
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/share/man/
drwxr-xr-x root/root 0 2021-09-01 13:33 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/DAScover.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/DASedit.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/DASmap.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/DASpatch.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/DASqv.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/DASrealign.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/DAStrim.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/REPcover.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/REPqv.1.gz -> dascrubber.1.gz
lrwxrwxrwx root/root 0 2021-09-01 13:33 ./usr/share/man/man1/REPtrim.1.gz -> dascrubber.1.gz
-rw-r--r-- root/root 474 2021-09-01 13:33 ./usr/share/man/man1/dascrubber.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 9560
Build-Time: 185
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 249
Job: dascrubber_1.1-4
Machine Architecture: armhf
Package: dascrubber
Package-Time: 487
Source-Version: 1.1-4
Space: 9560
Status: successful
Version: 1.1-4
--------------------------------------------------------------------------------
Finished at 2021-09-07T05:49:21Z
Build needed 00:08:07, 9560k disc space