clonalframe →
1.2-3+b1 →
armhf → 2015-11-29 21:25:17
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-04
╔══════════════════════════════════════════════════════════════════════════════╗
║ clonalframe 1.2-3+b1 (armhf) 29 Nov 2015 21:14 ║
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Package: clonalframe
Version: 1.2-3+b1
Source Version: 1.2-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/clonalframe-JwhI7c/clonalframe-1.2' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/clonalframe-JwhI7c' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-ec53ff05-678e-4b6d-aea2-4aa5fadad4d1' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8495 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.5 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Checking available source versions...
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NOTICE: 'clonalframe' packaging is maintained in the 'Svn' version control system at:
svn://svn.debian.org/debian-med/trunk/packages/clonalframe/trunk
Need to get 51.2 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main clonalframe 1.2-3 (dsc) [1399 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main clonalframe 1.2-3 (tar) [45.5 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main clonalframe 1.2-3 (diff) [4317 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-WKRuoI/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
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(Reading database ... 12877 files and directories currently installed.)
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Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 8), qt4-qmake, libgsl0-dev, libqt4-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 8), qt4-qmake, libgsl0-dev, libqt4-dev
dpkg-deb: building package 'sbuild-build-depends-clonalframe-dummy' in '/«BUILDDIR»/resolver-rXbMEF/apt_archive/sbuild-build-depends-clonalframe-dummy.deb'.
OK
Ign file: ./ InRelease
Get:1 file: ./ Release.gpg [299 B]
Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install clonalframe build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils debhelper dh-strip-nondeterminism file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libaudio2 libcroco3 libexpat1 libffi6
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0
libgsl-dev libgsl2 libice6 libicu55 libjbig0 libjpeg62-turbo libjpeg8
liblcms2-2 libmagic1 libmng1 libpipeline1 libqt4-dbus libqt4-declarative
libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network
libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg
libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4
libsm6 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxml2 libxrender1 libxt6 man-db po-debconf qdbus
qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n ucf x11-common
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff nas gsl-ref-psdoc gsl-doc-pdf
gsl-doc-info gsl-ref-html liblcms2-utils libqt4-declarative-folderlistmodel
libqt4-declarative-gestures libqt4-declarative-particles
libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev
libpq-dev libsqlite0-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev
libthai0 qt4-qtconfig less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libqt4-opengl-dev ca-certificates libqt4-sql-mysql libqt4-sql-odbc
libqt4-sql-psql libqt4-sql-sqlite libqt4-sql-sqlite2 libcups2 qt-at-spi
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper dh-strip-nondeterminism file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libaudio2 libcroco3 libexpat1 libffi6
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libglib2.0-0
libgsl-dev libgsl2 libice6 libicu55 libjbig0 libjpeg62-turbo libjpeg8
liblcms2-2 libmagic1 libmng1 libpipeline1 libqt4-dbus libqt4-declarative
libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network
libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg
libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4
libsm6 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6
libxext6 libxml2 libxrender1 libxt6 man-db po-debconf qdbus
qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n
sbuild-build-depends-clonalframe-dummy ucf x11-common
0 upgraded, 71 newly installed, 0 to remove and 22 not upgraded.
Need to get 40.8 MB/40.8 MB of archives.
After this operation, 150 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-4 [1084 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.5-1 [975 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libfreetype6 armhf 2.6.1-0.1 [411 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0031 [68.9 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.35-1 [1064 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main fontconfig armhf 2.11.0-6.3 [402 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+12 [251 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libxdmcp6 armhf 1:1.1.2-1 [25.0 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main libxcb1 armhf 1.10-3+b1 [40.6 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libx11-data all 2:1.6.3-1 [128 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libxt6 armhf 1:1.1.5-1 [155 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libaudio2 armhf 1.9.4-3 [73.0 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libjpeg8 armhf 8d1-2 [108 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main liblcms2-2 armhf 2.6-3 [113 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libmng1 armhf 1.0.10+dfsg-3.1 [164 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.25-2 [250 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.25-2 [61.2 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libicu55 armhf 55.1-6 [7379 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.2+zdfsg1-4 [797 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.46.2-1 [2482 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.9-1 [129 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libarchive-zip-perl all 1.53-1 [97.3 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:42 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20151005 [817 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main libgsl2 armhf 2.1+dfsg-2 [697 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libgsl-dev armhf 2.1+dfsg-2 [812 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.4.1-2 [103 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main qtcore4-l10n all 4:4.8.7+dfsg-4+rpi1 [661 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libqtcore4 armhf 4:4.8.7+dfsg-4+rpi1 [1359 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libqt4-xml armhf 4:4.8.7+dfsg-4+rpi1 [125 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libqtdbus4 armhf 4:4.8.7+dfsg-4+rpi1 [193 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main qtchooser armhf 52-gae5eeef-2 [20.6 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main qdbus armhf 4:4.8.7+dfsg-4+rpi1 [71.3 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libqt4-dbus armhf 4:4.8.7+dfsg-4+rpi1 [51.9 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main libqt4-network armhf 4:4.8.7+dfsg-4+rpi1 [499 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libqt4-script armhf 4:4.8.7+dfsg-4+rpi1 [678 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main libqt4-sql armhf 4:4.8.7+dfsg-4+rpi1 [128 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main libqt4-xmlpatterns armhf 4:4.8.7+dfsg-4+rpi1 [875 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main libtiff5 armhf 4.0.5-1 [200 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main libxrender1 armhf 1:0.9.9-2 [28.9 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main libqtgui4 armhf 4:4.8.7+dfsg-4+rpi1 [3425 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main libqt4-declarative armhf 4:4.8.7+dfsg-4+rpi1 [895 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main libqt4-designer armhf 4:4.8.7+dfsg-4+rpi1 [3355 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main libqt4-qt3support armhf 4:4.8.7+dfsg-4+rpi1 [896 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main libqt4-dev-bin armhf 4:4.8.7+dfsg-4+rpi1 [1432 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main libqt4-help armhf 4:4.8.7+dfsg-4+rpi1 [219 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main libqt4-scripttools armhf 4:4.8.7+dfsg-4+rpi1 [228 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main libqt4-svg armhf 4:4.8.7+dfsg-4+rpi1 [156 kB]
Get:67 http://172.17.0.1/private/ stretch-staging/main libqt4-test armhf 4:4.8.7+dfsg-4+rpi1 [96.8 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main qt4-linguist-tools armhf 4:4.8.7+dfsg-4+rpi1 [753 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main qt4-qmake armhf 4:4.8.7+dfsg-4+rpi1 [1137 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main libqt4-dev armhf 4:4.8.7+dfsg-4+rpi1 [881 kB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-7 dpkg-dev_1.18.3 g++-5_5.2.1-23+rpi1 gcc-5_5.2.1-23+rpi1 libc6-dev_2.19-22 libstdc++-4.9-dev_4.9.3-5 libstdc++-5-dev_5.2.1-23+rpi1 libstdc++6_5.2.1-23+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-7 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-5_5.2.1-23+rpi1 dash_0.5.7-4 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20151005 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.110-1+rpi1 dpkg_1.18.3 dpkg-dev_1.18.3 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.35-1 g++_4:5.2.1-4+rpi2 g++-5_5.2.1-23+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1 gcc-4.9-base_4.9.3-5 gcc-5_5.2.1-23+rpi1 gcc-5-base_5.2.1-23+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-6 gpgv_1.4.19-6 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 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libgcc-5-dev_5.2.1-23+rpi1 libgcc1_1:5.2.1-23+rpi1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-1 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.2.1-23+rpi1 libgpg-error0_1.20-1 libgsl-dev_2.1+dfsg-2 libgsl2_2.1+dfsg-2 libice6_2:1.0.9-1+b1 libicu55_55.1-6 libisl13_0.14-2 libjbig0_2.1-3.1 libjpeg62-turbo_1:1.4.1-2 libjpeg8_8d1-2 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblcms2-2_2.6-3 liblocale-gettext-perl_1.07-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmng1_1.0.10+dfsg-3.1 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7.4 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libqt4-dbus_4:4.8.7+dfsg-4+rpi1 libqt4-declarative_4:4.8.7+dfsg-4+rpi1 libqt4-designer_4:4.8.7+dfsg-4+rpi1 libqt4-dev_4:4.8.7+dfsg-4+rpi1 libqt4-dev-bin_4:4.8.7+dfsg-4+rpi1 libqt4-help_4:4.8.7+dfsg-4+rpi1 libqt4-network_4:4.8.7+dfsg-4+rpi1 libqt4-qt3support_4:4.8.7+dfsg-4+rpi1 libqt4-script_4:4.8.7+dfsg-4+rpi1 libqt4-scripttools_4:4.8.7+dfsg-4+rpi1 libqt4-sql_4:4.8.7+dfsg-4+rpi1 libqt4-svg_4:4.8.7+dfsg-4+rpi1 libqt4-test_4:4.8.7+dfsg-4+rpi1 libqt4-xml_4:4.8.7+dfsg-4+rpi1 libqt4-xmlpatterns_4:4.8.7+dfsg-4+rpi1 libqtcore4_4:4.8.7+dfsg-4+rpi1 libqtdbus4_4:4.8.7+dfsg-4+rpi1 libqtgui4_4:4.8.7+dfsg-4+rpi1 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2+b1 libsm6_2:1.2.2-1+b1 libsmartcols1_2.27.1-1 libss2_1.42.13-1 libstdc++-4.9-dev_4.9.3-5 libstdc++-5-dev_5.2.1-23+rpi1 libstdc++6_5.2.1-23+rpi1 libsystemd0_228-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtiff5_4.0.5-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.2.1-23+rpi1 libudev1_228-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb1_1.10-3+b1 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxml2_2.9.2+zdfsg1-4 libxrender1_1:0.9.9-2 libxt6_1:1.1.5-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 mawk_1.3.3-17 mount_2.27.1-1 multiarch-support_2.19-22 nano_2.4.2-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 po-debconf_1.0.18 procps_2:3.3.10-2 qdbus_4:4.8.7+dfsg-4+rpi1 qt4-linguist-tools_4:4.8.7+dfsg-4+rpi1 qt4-qmake_4:4.8.7+dfsg-4+rpi1 qtchooser_52-gae5eeef-2 qtcore4-l10n_4:4.8.7+dfsg-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-clonalframe-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-2 systemd-sysv_228-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 ucf_3.0031 udev_228-2 util-linux_2.27.1-1 x11-common_1:7.7+12 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Jan 7 08:32:26 2012 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./clonalframe_1.2-3.dsc
dpkg-source: info: extracting clonalframe in clonalframe-1.2
dpkg-source: info: unpacking clonalframe_1.2.orig.tar.gz
dpkg-source: info: unpacking clonalframe_1.2-3.debian.tar.gz
dpkg-source: info: applying 01_gcc-4.6.patch
Check disc space
────────────────
Sufficient free space for build
Hack binNMU version
───────────────────
Created changelog entry for binNMU version 1.2-3+b1
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-ec53ff05-678e-4b6d-aea2-4aa5fadad4d1
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package clonalframe
dpkg-buildpackage: source version 1.2-3+b1
dpkg-buildpackage: source distribution stretch-staging
dpkg-source --before-build clonalframe-1.2
dpkg-buildpackage: host architecture armhf
dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
debian/rules override_dh_clean
make[1]: Entering directory '/«PKGBUILDDIR»'
dh_clean
rm -rf bin build Makefile
make[1]: Leaving directory '/«PKGBUILDDIR»'
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
qmake -makefile -nocache QMAKE_STRIP=: PREFIX=/usr
debian/rules override_dh_auto_build
make[1]: Entering directory '/«PKGBUILDDIR»'
qmake; /usr/bin/make
make[2]: Entering directory '/«PKGBUILDDIR»'
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/alignment_xmfa.o src/alignment_xmfa.cpp
src/alignment_xmfa.cpp: In constructor 'wb::Alignment_xmfa::Alignment_xmfa(char*, bool, int)':
src/alignment_xmfa.cpp:129:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (j=0;j<strlen(bufin[i]);j++) {
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/alignment_structure.o src/alignment_structure.cpp
src/alignment_structure.cpp: In constructor 'wb::Alignment_structure::Alignment_structure(char*, int)':
src/alignment_structure.cpp:45:19: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if (ch>='0' & ch<='9')
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/alignment.o src/alignment.cpp
src/alignment.cpp: In member function 'void wb::Alignment::writeToFile(char*)':
src/alignment.cpp:236:21: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
char * lets="ATCG";
^
src/alignment.cpp:241:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int i=0;i<getB();i++) {
^
src/alignment.cpp:243:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int j=0;j<getN();j++) {
^
src/alignment.cpp:244:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int k=beg;k<end;k++)
^
src/alignment.cpp:246:41: warning: embedded '\0' in format [-Wformat-contains-nul]
sprintf(buf+end-beg,"\0");
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/boot.o src/boot.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/burst.o src/burst.cpp
src/burst.cpp: In member function 'void wb::Burst::burst(wb::Param*)':
src/burst.cpp:188:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (k=1;k<rid->size();k++)
^
src/burst.cpp:190:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (k>=rid->size()) continue;
^
src/burst.cpp: In member function 'void wb::Burst::optimiseFathers(gsl_vector_int*, std::vector<std::vector<int> >*, int)':
src/burst.cpp:259:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (slvs->at(prop).size()>current && !descended(prop,i,fathers)) {
^
src/burst.cpp: At global scope:
src/burst.cpp:252:89: warning: unused parameter 'f' [-Wunused-parameter]
void Burst::optimiseFathers(gsl_vector_int * fathers,vector<vector<int> > *slvs,int f) {
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/consensus.o src/consensus.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/genes.o src/genes.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/hashcell.o src/hashcell.cpp
src/hashcell.cpp: In member function 'void wb::HashCell::addNode(wb::Tree*)':
src/hashcell.cpp:51:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (l>=t->recMap->size) break;
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_ages.o src/move_ages.cpp
src/move_ages.cpp: In member function 'virtual void wb::Move_ages::move(wb::Param*)':
src/move_ages.cpp:60:21: warning: suggest braces around empty body in an 'else' statement [-Wempty-body]
} else ;//printf("Age change rejected because out of range\n");
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_delta.o src/move_delta.cpp
src/move_delta.cpp:24:50: warning: unused parameter 'p' [-Wunused-parameter]
Move_delta::Move_delta(gsl_rng * rng,Param * p):Move(rng) {
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_gap.o src/move_gap.cpp
src/move_gap.cpp:24:46: warning: unused parameter 'p' [-Wunused-parameter]
Move_gap::Move_gap(gsl_rng * rng,Param * p) : Move(rng) {}
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_hidden.o src/move_hidden.cpp
src/move_hidden.cpp:25:52: warning: unused parameter 'p' [-Wunused-parameter]
Move_hidden::Move_hidden(gsl_rng * rng,Param * p) : Move(rng)
^
src/move_hidden.cpp: In member function 'void wb::Move_hidden::forwardfast(wb::Param*, wb::Tree*)':
src/move_hidden.cpp:127:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int i=0;i<L;i++)
^
src/move_hidden.cpp:133:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int j=0;j<nbstates;j++) gsl_vector_set(probas,j,gsl_vector_get(pbeg,j));
^
src/move_hidden.cpp:137:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int j=0;j<nbstates;j++) gsl_vector_set(probas,j,gsl_vector_get(probas,j)*gsl_matrix_get(a,j,j)*gsl_matrix_get(e,j,msgs[k]));
^
src/move_hidden.cpp:132:21: warning: unused variable 'top' [-Wunused-variable]
int top=0,left=0,right=0;
^
src/move_hidden.cpp:132:27: warning: unused variable 'left' [-Wunused-variable]
int top=0,left=0,right=0;
^
src/move_hidden.cpp:132:34: warning: unused variable 'right' [-Wunused-variable]
int top=0,left=0,right=0;
^
src/move_hidden.cpp: In member function 'void wb::Move_hidden::backward(wb::Param*, gsl_matrix*, wb::Tree*)':
src/move_hidden.cpp:203:17: warning: unused variable 'd' [-Wunused-variable]
int d=gsl_vector_int_get(p->a->polySites,old)- gsl_vector_int_get(p->a->polySites,old-1);
^
src/move_hidden.cpp: In member function 'int wb::Move_hidden::setState(wb::Tree*, wb::Param*, int, gsl_vector*)':
src/move_hidden.cpp:271:64: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
gsl_vector_char_get(t->father->ancSeq,site));
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_hidden2.o src/move_hidden2.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_mu.o src/move_mu.cpp
src/move_mu.cpp:24:44: warning: unused parameter 'p' [-Wunused-parameter]
Move_mu::Move_mu(gsl_rng * rng,Param * p):Move(rng) {}
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_nu.o src/move_nu.cpp
src/move_nu.cpp:24:44: warning: unused parameter 'p' [-Wunused-parameter]
Move_nu::Move_nu(gsl_rng * rng,Param * p):Move(rng) {}
^
src/move_nu.cpp: In member function 'virtual void wb::Move_nu::move(wb::Param*)':
src/move_nu.cpp:56:16: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (gsl_vector_char_get(t->recMap,j)==1)
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_rho.o src/move_rho.cpp
src/move_rho.cpp:24:46: warning: unused parameter 'p' [-Wunused-parameter]
Move_rho::Move_rho(gsl_rng * rng,Param * p):Move(rng)
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move_wb.o src/move_wb.cpp
src/move_wb.cpp: In member function 'virtual void wb::Move_wb::move(wb::Param*)':
src/move_wb.cpp:127:17: warning: unused variable 'sizeys2' [-Wunused-variable]
int sizeys2=propLocs(ys,probys,x,p);
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/move.o src/move.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/param.o src/param.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/recorder.o src/recorder.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/tree_coal.o src/tree_coal.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/tree_simple.o src/tree_simple.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/tree_upgma.o src/tree_upgma.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/tree_newick.o src/tree_newick.cpp
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/tree.o src/tree.cpp
src/tree.cpp: In static member function 'static wb::Tree* wb::Tree::move(wb::Tree*, wb::Tree*, double, gsl_vector_char*, gsl_vector_char*, wb::Param*)':
src/tree.cpp:99:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
if (z!=NULL)
^
src/tree.cpp: In member function 'double wb::Tree::llhoodb(wb::Param*)':
src/tree.cpp:229:96: warning: 'vals[9]' may be used uninitialized in this function [-Wmaybe-uninitialized]
} else if (gsl_vector_char_get(recMap,i)==0) {ret+=vals[8];} else {ret+=vals[9];p->rec++;}
^
src/tree.cpp:223:38: warning: 'vals[5]' may be used uninitialized in this function [-Wmaybe-uninitialized]
{ret+=vals[5];p->rec++;}
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/util.o src/util.cpp
src/util.cpp: In static member function 'static void wb::Util::normalize(double*, int)':
src/util.cpp:83:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int i=0;i<size;i++) sum+=v[i];
^
src/util.cpp:85:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (unsigned int i=0;i<size;i++) v[i]/=sum;
^
g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4 -Ibuild -o build/ClonalFrame.o src/ClonalFrame.cpp
src/ClonalFrame.cpp: In function 'gsl_rng* makerng()':
src/ClonalFrame.cpp:83:14: warning: variable 'rng_seed' set but not used [-Wunused-but-set-variable]
long int rng_seed;
^
src/ClonalFrame.cpp: In function 'int main(int, char**)':
src/ClonalFrame.cpp:263:68: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
if (cleanup==true) {a->cleanUp();a->writeToFile("/tmp/out.xmfa");}
^
src/ClonalFrame.cpp:341:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat=]
printf("Time spent in MH in seconds:%d\n",t2-t);
^
g++ -Wl,-O1 -o bin/ClonalFrame build/alignment_xmfa.o build/alignment_structure.o build/alignment.o build/boot.o build/burst.o build/consensus.o build/genes.o build/hashcell.o build/move_ages.o build/move_delta.o build/move_gap.o build/move_hidden.o build/move_hidden2.o build/move_mu.o build/move_nu.o build/move_rho.o build/move_wb.o build/move.o build/param.o build/recorder.o build/tree_coal.o build/tree_simple.o build/tree_upgma.o build/tree_newick.o build/tree.o build/util.o build/ClonalFrame.o -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lQtGui -lQtCore -lpthread
make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/clonalframe/usr/bin/ClonalFrame contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clonalframe/usr/bin/ClonalFrame was not linked against libgslcblas.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clonalframe/usr/bin/ClonalFrame was not linked against libQtGui.so.4 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clonalframe/usr/bin/ClonalFrame was not linked against libpthread.so.0 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clonalframe/usr/bin/ClonalFrame was not linked against libQtCore.so.4 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'clonalframe' in '../clonalframe_1.2-3+b1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../clonalframe_1.2-3+b1_armhf.changes
dpkg-genchanges: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build clonalframe-1.2
dpkg-source: warning: unknown information field 'Dm-Upload-Allowed' in input data in general section of control info file
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151129-2124
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
clonalframe_1.2-3+b1_armhf.changes:
───────────────────────────────────
Format: 1.8
Date: Sat, 07 Jan 2012 09:26:15 +0100
Source: clonalframe (1.2-3)
Binary: clonalframe
Binary-Only: yes
Architecture: armhf
Version: 1.2-3+b1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
clonalframe - inference of bacterial microevolution using multilocus sequence d
Changes:
clonalframe (1.2-3+b1) stretch-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
46b00be201d62874ccd1eb935a58282186291a2e 40160 clonalframe_1.2-3+b1_armhf.deb
Checksums-Sha256:
3b574fd477442582ad18f18847af349a324c3ac10f39dbcb75b9ecd3883684a0 40160 clonalframe_1.2-3+b1_armhf.deb
Files:
e4254cdc8cd2dbbd68de82861cb3881c 40160 science optional clonalframe_1.2-3+b1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
clonalframe_1.2-3+b1_armhf.deb
──────────────────────────────
new debian package, version 2.0.
size 40160 bytes: control archive=1064 bytes.
1270 bytes, 23 lines control
360 bytes, 5 lines md5sums
Package: clonalframe
Source: clonalframe (1.2-3)
Version: 1.2-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 98
Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libgsl2, libqtcore4 (>= 4:4.5.3), libqtgui4 (>= 4:4.5.3), libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm
Description: inference of bacterial microevolution using multilocus sequence data
ClonalFrame identifies the clonal relationships between the members of
a sample, while also estimating the chromosomal position of homologous
recombination events that have disrupted the clonal inheritance.
.
ClonalFrame can be applied to any kind of sequence data, from a single
fragment of DNA to whole genomes. It is well suited for the analysis of
MLST data, where 7 gene fragments have been sequenced, but becomes
progressively more powerful as the sequenced regions increase in length
and number up to whole genomes. However, it requires the sequences to be
aligned. If you have genomic data that is not aligned, we recommend
using Mauve which produces alignment of whole bacterial genomes in
exactly the format required for analysis with ClonalFrame.
drwxr-xr-x root/root 0 2015-11-29 21:23 ./
drwxr-xr-x root/root 0 2015-11-29 21:23 ./usr/
drwxr-xr-x root/root 0 2015-11-29 21:23 ./usr/bin/
-rwxr-xr-x root/root 84124 2015-11-29 21:23 ./usr/bin/ClonalFrame
drwxr-xr-x root/root 0 2015-11-29 21:23 ./usr/share/
drwxr-xr-x root/root 0 2015-11-29 21:23 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-11-29 21:23 ./usr/share/doc/clonalframe/
-rw-r--r-- root/root 222 2015-11-29 21:22 ./usr/share/doc/clonalframe/changelog.Debian.armhf.gz
-rw-r--r-- root/root 424 2015-11-29 21:22 ./usr/share/doc/clonalframe/changelog.Debian.gz
-rw-r--r-- root/root 1268 2011-12-07 07:37 ./usr/share/doc/clonalframe/copyright
drwxr-xr-x root/root 0 2015-11-29 21:23 ./usr/share/man/
drwxr-xr-x root/root 0 2015-11-29 21:23 ./usr/share/man/man1/
-rw-r--r-- root/root 1055 2015-11-29 21:23 ./usr/share/man/man1/ClonalFrame.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 956
Build-Time: 137
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 378
Job: clonalframe_1.2-3
Machine Architecture: armhf
Package: clonalframe
Package-Time: 580
Source-Version: 1.2-3
Space: 956
Status: successful
Version: 1.2-3+b1
────────────────────────────────────────────────────────────────────────────────
Finished at 20151129-2124
Build needed 00:09:40, 956k disc space