clearcut →
1.0.9-5 →
armhf → 2020-03-14 05:07:13
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| clearcut 1.0.9-5 (armhf) Sat, 14 Mar 2020 04:59:43 +0000 |
+==============================================================================+
Package: clearcut
Version: 1.0.9-5
Source Version: 1.0.9-5
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-8191ef4e-6694-4fd7-b0e9-99b282a0454d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.4 MB in 26s (934 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'clearcut' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/clearcut.git
Please use:
git clone https://salsa.debian.org/med-team/clearcut.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 358 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main clearcut 1.0.9-5 (dsc) [1997 B]
Get:2 http://172.17.0.1/private bullseye-staging/main clearcut 1.0.9-5 (tar) [350 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main clearcut 1.0.9-5 (diff) [5820 B]
Fetched 358 kB in 0s (2440 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/clearcut-AC094h/clearcut-1.0.9' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/clearcut-AC094h' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Ed3mDI/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Ed3mDI/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2844 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12215 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12)
Filtered Build-Depends: debhelper-compat (= 12)
dpkg-deb: building package 'sbuild-build-depends-clearcut-dummy' in '/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive/sbuild-build-depends-clearcut-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-clearcut-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ Sources [490 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ Packages [571 B]
Fetched 2394 B in 1s (3235 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install clearcut build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtinfo5 libtool libuchardet0 libxml2 m4 man-db
po-debconf sbuild-build-depends-clearcut-dummy sensible-utils
0 upgraded, 36 newly installed, 0 to remove and 33 not upgraded.
Need to get 18.7 MB of archives.
After this operation, 67.7 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Ed3mDI/apt_archive ./ sbuild-build-depends-clearcut-dummy 0.invalid.0 [856 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-2 [104 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.5-1 [1140 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-4 [592 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../01-libtinfo5_6.2-1_armhf.deb ...
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Preparing to unpack .../02-bsdmainutils_11.1.2_armhf.deb ...
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Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up libarchive-zip-perl (1.67-2) ...
Setting up libglib2.0-0:armhf (2.62.5-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (12.9) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-4) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.10+dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.9) ...
Setting up sbuild-build-depends-clearcut-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-10+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-3+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-10+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4+b1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-3+rpi1 binutils-arm-linux-gnueabihf_2.34-3+rpi1 binutils-common_2.34-3+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-2 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.19-2 gnupg-l10n_2.2.19-2 gnupg-utils_2.2.19-2 gpg_2.2.19-2 gpg-agent_2.2.19-2 gpg-wks-client_2.2.19-2 gpg-wks-server_2.2.19-2 gpgconf_2.2.19-2 gpgsm_2.2.19-2 gpgv_2.2.19-2 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-1 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4+b1 libarchive-zip-perl_1.67-2 libasan5_9.2.1-25+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-25+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.34-3+rpi1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-10+rpi1 libc-dev-bin_2.29-10+rpi1 libc6_2.29-10+rpi1 libc6-dev_2.29-10+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.32-1 libcap2-bin_1:2.32-1 libcc1-0_9.2.1-25+rpi1 libcom-err2_1.45.5-2 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.34-3+rpi1 libctf0_2.34-3+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.2.1-25+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.5-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.49+dfsg-1+rpi1 libldap-common_2.4.49+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.32-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2+rpi1 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-3 libss2_1.45.5-2 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-14 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml2_2.9.10+dfsg-4 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-clearcut-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1.2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Mar 12 10:08:55 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./clearcut_1.0.9-5.dsc
dpkg-source: info: extracting clearcut in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking clearcut_1.0.9.orig.tar.gz
dpkg-source: info: unpacking clearcut_1.0.9-5.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mothur_trivial_patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying clear-errno-before-checking.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-8191ef4e-6694-4fd7-b0e9-99b282a0454d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package clearcut
dpkg-buildpackage: info: source version 1.0.9-5
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f *.o a.out *.a clearcut
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer clearcut.c
gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer dist.c
gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer dmat.c
gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer fasta.c
fasta.c: In function 'NJ_read_fasta':
fasta.c:307:19: warning: variable 'x' set but not used [-Wunused-but-set-variable]
307 | long int index, x, seq;
| ^
clearcut.c: In function 'NJ_neighbor_joining':
clearcut.c:1106:9: warning: variable 'min' set but not used [-Wunused-but-set-variable]
1106 | float min;
| ^~~
clearcut.c: In function 'NJ_relaxed_nj':
clearcut.c:1224:12: warning: variable 'q' set but not used [-Wunused-but-set-variable]
1224 | float p, q, x;
| ^
dist.c: In function 'NJ_DNA_jc_correction':
dist.c:268:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
268 | long int k;
| ^
dist.c: In function 'NJ_compute_dmat':
dist.c:154:5: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
154 | strncpy(dmat->taxaname[i], alignment->titles[i], strlen(alignment->titles[i]));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer cmdargs.c
gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer prng.c
gcc -c -I /usr/local/include -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer getopt_long.c
gcc -o clearcut clearcut.o dist.o dmat.o fasta.o cmdargs.o prng.o getopt_long.o -lm -Wl,-z,relro
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -X.dist
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clearcut/usr/bin/clearcut was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'clearcut' in '../clearcut_1.0.9-5_armhf.deb'.
dpkg-deb: building package 'clearcut-dbgsym' in '../clearcut-dbgsym_1.0.9-5_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../clearcut_1.0.9-5_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-03-14T05:07:07Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
clearcut_1.0.9-5_armhf.changes:
-------------------------------
Format: 1.8
Date: Thu, 12 Mar 2020 11:06:18 +0100
Source: clearcut
Binary: clearcut clearcut-dbgsym
Architecture: armhf
Version: 1.0.9-5
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
clearcut - extremely efficient phylogenetic tree reconstruction
Closes: 953675
Changes:
clearcut (1.0.9-5) unstable; urgency=medium
.
[ Steve Langasek ]
* clear errno before using it to check failure from atof()
Closes: #953675
.
[ Andreas Tille ]
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 12 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Add salsa-ci file (routine-update)
* Propagate CFLAGS to upstream Makefile
Checksums-Sha1:
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60292f940c680ce9895bbda02eef9085c5c80e31 4611 clearcut_1.0.9-5_armhf.buildinfo
c40f6848e358d60c44937353b29c2610da219c18 274784 clearcut_1.0.9-5_armhf.deb
Checksums-Sha256:
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9b50242e3c765c6b3a907b27b1d62641bfc31720e321f5527702c4f23b579544 4611 clearcut_1.0.9-5_armhf.buildinfo
c5e43ff9ac5cd55438e1345343b568f46bc26b41e704464e582fbf073f1199c3 274784 clearcut_1.0.9-5_armhf.deb
Files:
73141a12f179f2a04075a4c8077e5f86 64696 debug optional clearcut-dbgsym_1.0.9-5_armhf.deb
47c2cbd69b579fb341754bca087318b8 4611 science optional clearcut_1.0.9-5_armhf.buildinfo
5ff24d807568aaa813c82bf7b270c75d 274784 science optional clearcut_1.0.9-5_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
clearcut-dbgsym_1.0.9-5_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 64696 bytes: control archive=536 bytes.
373 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: clearcut-dbgsym
Source: clearcut
Version: 1.0.9-5
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 80
Depends: clearcut (= 1.0.9-5)
Section: debug
Priority: optional
Description: debug symbols for clearcut
Build-Ids: 6f9266bb530f3a8baa6307c29c93a9afc4861bf4
drwxr-xr-x root/root 0 2020-03-12 10:06 ./
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/lib/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/lib/debug/.build-id/6f/
-rw-r--r-- root/root 71028 2020-03-12 10:06 ./usr/lib/debug/.build-id/6f/9266bb530f3a8baa6307c29c93a9afc4861bf4.debug
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/share/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-03-12 10:06 ./usr/share/doc/clearcut-dbgsym -> clearcut
clearcut_1.0.9-5_armhf.deb
--------------------------
new Debian package, version 2.0.
size 274784 bytes: control archive=984 bytes.
575 bytes, 14 lines control
737 bytes, 10 lines md5sums
Package: clearcut
Version: 1.0.9-5
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1199
Depends: libc6 (>= 2.29)
Section: science
Priority: optional
Homepage: http://bioinformatics.hungry.com/clearcut/
Description: extremely efficient phylogenetic tree reconstruction
Clearcut is the reference implementation for the Relaxed Neighbor Joining (RNJ)
algorithm by J. Evans, L. Sheneman, and J. Foster from the Initiative
for Bioinformatics and Evolutionary Studies (IBEST) at the University of
Idaho.
drwxr-xr-x root/root 0 2020-03-12 10:06 ./
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/bin/
-rwxr-xr-x root/root 76120 2020-03-12 10:06 ./usr/bin/clearcut
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/share/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/share/doc/clearcut/
-rw-r--r-- root/root 2416 2009-02-09 21:31 ./usr/share/doc/clearcut/README.gz
-rw-r--r-- root/root 749 2020-03-12 10:06 ./usr/share/doc/clearcut/changelog.Debian.gz
-rw-r--r-- root/root 3073 2020-03-12 10:06 ./usr/share/doc/clearcut/copyright
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/share/doc/clearcut/examples/
-rw-r--r-- root/root 322 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/alignment1.dist
-rw-r--r-- root/root 116 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/lower_diag.dist
-rw-r--r-- root/root 211 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/symmetric.dist
-rw-r--r-- root/root 1126705 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/treezilla.dist
-rw-r--r-- root/root 154 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/upper_diag.dist
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/share/man/
drwxr-xr-x root/root 0 2020-03-12 10:06 ./usr/share/man/man1/
-rw-r--r-- root/root 919 2020-03-12 10:06 ./usr/share/man/man1/clearcut.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 3864
Build-Time: 51
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 344
Job: clearcut_1.0.9-5
Machine Architecture: armhf
Package: clearcut
Package-Time: 444
Source-Version: 1.0.9-5
Space: 3864
Status: successful
Version: 1.0.9-5
--------------------------------------------------------------------------------
Finished at 2020-03-14T05:07:07Z
Build needed 00:07:24, 3864k disc space