clearcut →
1.0.9-4 →
armhf → 2019-07-09 04:57:32
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| clearcut 1.0.9-4 (armhf) Tue, 09 Jul 2019 04:50:50 +0000 |
+==============================================================================+
Package: clearcut
Version: 1.0.9-4
Source Version: 1.0.9-4
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-e21113fc-c7b8-4325-be18-4481dc33c89e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.4 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.4 MB in 28s (878 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'clearcut' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/clearcut.git
Please use:
git clone https://salsa.debian.org/med-team/clearcut.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 357 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main clearcut 1.0.9-4 (dsc) [1988 B]
Get:2 http://172.17.0.1/private bullseye-staging/main clearcut 1.0.9-4 (tar) [350 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main clearcut 1.0.9-4 (diff) [5012 B]
Fetched 357 kB in 0s (3829 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/clearcut-rXdvCd/clearcut-1.0.9' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/clearcut-rXdvCd' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-WBEIRu/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-WBEIRu/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-WBEIRu/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2873 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-WBEIRu/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 2 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12050 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~)
Filtered Build-Depends: debhelper (>= 11~)
dpkg-deb: building package 'sbuild-build-depends-clearcut-dummy' in '/<<BUILDDIR>>/resolver-WBEIRu/apt_archive/sbuild-build-depends-clearcut-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-clearcut-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Sources [489 B]
Get:5 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Packages [568 B]
Fetched 2390 B in 1s (2944 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-WBEIRu/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install clearcut build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc
libmagic1 libncurses6 libpipeline1 libsigsegv2 libtinfo5 libtool
libuchardet0 libxml2 m4 man-db po-debconf sensible-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc
libmagic1 libncurses6 libpipeline1 libsigsegv2 libtinfo5 libtool
libuchardet0 libxml2 m4 man-db po-debconf
sbuild-build-depends-clearcut-dummy sensible-utils
0 upgraded, 35 newly installed, 0 to remove and 2 not upgraded.
Need to get 18.3 MB of archives.
After this operation, 66.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-WBEIRu/apt_archive ./ sbuild-build-depends-clearcut-dummy 0.invalid.0 [852 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.9.1-2 [104 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20181013-2 [309 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-3 [782 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.1-2 [26.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.8.5-2 [1230 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12 [15.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.35-4 [242 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.35-4 [110 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.35-4 [65.3 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-9 [547 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.58.3-2 [1077 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.1-6 [7973 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.12-3 [132 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20181013-2 [78.6 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.1.1 [1016 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.5.1-2) ...
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Setting up libglib2.0-0:armhf (2.58.3-2) ...
No schema files found: doing nothing.
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Setting up libsigsegv2:armhf (2.12-2) ...
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Setting up libtinfo5:armhf (6.1+20181013-2) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7+b1) ...
Setting up libfile-stripnondeterminism-perl (1.1.2-1) ...
Setting up libtool (2.4.6-9) ...
Setting up m4 (1.4.18-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.12-3) ...
Setting up autoconf (2.69-11) ...
Setting up dwz (0.12-3) ...
Setting up groff-base (1.22.4-3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-9) ...
Setting up man-db (2.8.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up debhelper (12.1.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.1.2-1) ...
Setting up sbuild-build-depends-clearcut-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-10+rpi1) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-16+rpi1 dpkg-dev_1.19.7 g++-8_8.3.0-6+rpi1 gcc-8_8.3.0-6+rpi1 libc6-dev_2.28-10+rpi1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3+rpi1 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16+rpi1 binutils-arm-linux-gnueabihf_2.31.1-16+rpi1 binutils-common_2.31.1-16+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9.1 coreutils_8.30-3 cpp_4:8.3.0-1+rpi2 cpp-8_8.3.0-6+rpi1 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dirmngr_2.2.12-1+rpi1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.12-3 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1+rpi2 g++-8_8.3.0-6+rpi1 gcc_4:8.3.0-1+rpi2 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1+b1 gcc-7-base_7.3.0-19 gcc-8_8.3.0-6+rpi1 gcc-8-base_8.3.0-6+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.12-1+rpi1 gnupg-l10n_2.2.12-1+rpi1 gnupg-utils_2.2.12-1+rpi1 gpg_2.2.12-1+rpi1 gpg-agent_2.2.12-1+rpi1 gpg-wks-client_2.2.12-1+rpi1 gpg-wks-server_2.2.12-1+rpi1 gpgconf_2.2.12-1+rpi1 gpgsm_2.2.12-1+rpi1 gpgv_2.2.12-1+rpi1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_8.3.0-6+rpi1 libassuan0_2.5.2-1 libatomic1_8.3.0-6+rpi1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16+rpi1 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.1 libc-bin_2.28-10+rpi1 libc-dev-bin_2.28-10+rpi1 libc6_2.28-10+rpi1 libc6-dev_2.28-10+rpi1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6+rpi1 libcom-err2_1.44.5-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.5 libdebconfclient0_0.249 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.2-1 libgcc-8-dev_8.3.0-6+rpi1 libgcc1_1:8.3.0-6+rpi1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-4 libgomp1_8.3.0-6+rpi1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libisl19_0.20-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.47+dfsg-3+rpi1 libldap-common_2.4.47+dfsg-3+rpi1 liblocale-gettext-perl_1.07-3+b3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libreadline7_7.0-5 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libsqlite3-0_3.27.2-3 libss2_1.44.5-1 libstdc++-8-dev_8.3.0-6+rpi1 libstdc++6_8.3.0-6+rpi1 libsystemd0_241-5+rpi1 libtasn1-6_4.13-3 libtext-charwidth-perl_0.04-7.1+b1 libtext-iconv-perl_1.7-5+b10 libtext-wrapi18n-perl_0.06-7.1 libtinfo5_6.1+20181013-2 libtinfo6_6.1+20181013-2 libtool_2.4.6-9 libubsan1_8.3.0-6+rpi1 libuchardet0_0.0.6-3 libudev1_241-5+rpi1 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.8+dfsg-3+rpi1 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2019051400+rpi1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 netbase_5.6 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-clearcut-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Mar 29 07:32:16 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./clearcut_1.0.9-4.dsc
dpkg-source: info: extracting clearcut in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking clearcut_1.0.9.orig.tar.gz
dpkg-source: info: unpacking clearcut_1.0.9-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying mothur_trivial_patch
dpkg-source: info: applying hardening.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-e21113fc-c7b8-4325-be18-4481dc33c89e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package clearcut
dpkg-buildpackage: info: source version 1.0.9-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f *.o a.out *.a clearcut
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer clearcut.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer dist.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer dmat.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer fasta.c
fasta.c: In function 'NJ_read_fasta':
fasta.c:307:19: warning: variable 'x' set but not used [-Wunused-but-set-variable]
long int index, x, seq;
^
dist.c: In function 'NJ_DNA_jc_correction':
dist.c:268:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
long int k;
^
clearcut.c: In function 'NJ_neighbor_joining':
clearcut.c:1106:9: warning: variable 'min' set but not used [-Wunused-but-set-variable]
float min;
^~~
clearcut.c: In function 'NJ_relaxed_nj':
clearcut.c:1224:12: warning: variable 'q' set but not used [-Wunused-but-set-variable]
float p, q, x;
^
dist.c: In function 'NJ_compute_dmat':
dist.c:154:5: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
strncpy(dmat->taxaname[i], alignment->titles[i], strlen(alignment->titles[i]));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer cmdargs.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer prng.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer getopt_long.c
gcc -o clearcut clearcut.o dist.o dmat.o fasta.o cmdargs.o prng.o getopt_long.o -lm -Wl,-z,relro
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -X.dist
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'clearcut' in '../clearcut_1.0.9-4_armhf.deb'.
dpkg-deb: building package 'clearcut-dbgsym' in '../clearcut-dbgsym_1.0.9-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../clearcut_1.0.9-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-07-09T04:57:24Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
clearcut_1.0.9-4_armhf.changes:
-------------------------------
Format: 1.8
Date: Thu, 28 Mar 2019 22:16:52 -0700
Source: clearcut
Binary: clearcut clearcut-dbgsym
Architecture: armhf
Version: 1.0.9-4
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Joyce Zhou <jyzhou15@uw.edu>
Description:
clearcut - extremely efficient phylogenetic tree reconstruction
Closes: 909711
Changes:
clearcut (1.0.9-4) unstable; urgency=medium
.
* Team upload.
.
[ Jelmer Vernooij ]
* Trim trailing whitespace.
.
[ Joyce Zhou ]
* Add autopkgtest
Closes: #909711
Checksums-Sha1:
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806df54a82e1793a2ab366626cfbf1a60c5aa495 4412 clearcut_1.0.9-4_armhf.buildinfo
077a9d12d3fcf4a358f3025481b9146d1a4acd66 276276 clearcut_1.0.9-4_armhf.deb
Checksums-Sha256:
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7164014de13cc947e7ffc613a6975fca3ab738ae63a5ec1fec1d1062ccc1da37 4412 clearcut_1.0.9-4_armhf.buildinfo
40bb7cd3661d1d58fbb65196596ea20bb14b4f831bfd7ec360b857507182cee6 276276 clearcut_1.0.9-4_armhf.deb
Files:
0331c740f83ca50f2efd69bc22a15a37 4224 debug optional clearcut-dbgsym_1.0.9-4_armhf.deb
d50f4c04f7fe95788b05021829c3b743 4412 science optional clearcut_1.0.9-4_armhf.buildinfo
efe90ab312f55de202781ab83369d0b5 276276 science optional clearcut_1.0.9-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
clearcut-dbgsym_1.0.9-4_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 4224 bytes: control archive=532 bytes.
373 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: clearcut-dbgsym
Source: clearcut
Version: 1.0.9-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 21
Depends: clearcut (= 1.0.9-4)
Section: debug
Priority: optional
Description: debug symbols for clearcut
Build-Ids: 2c1d93550d26a4ee6ab043df9cd4f3745dbefd1c
drwxr-xr-x root/root 0 2019-03-29 05:16 ./
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/lib/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/lib/debug/.build-id/2c/
-rw-r--r-- root/root 10376 2019-03-29 05:16 ./usr/lib/debug/.build-id/2c/1d93550d26a4ee6ab043df9cd4f3745dbefd1c.debug
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/share/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-03-29 05:16 ./usr/share/doc/clearcut-dbgsym -> clearcut
clearcut_1.0.9-4_armhf.deb
--------------------------
new Debian package, version 2.0.
size 276276 bytes: control archive=980 bytes.
574 bytes, 14 lines control
737 bytes, 10 lines md5sums
Package: clearcut
Version: 1.0.9-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1199
Depends: libc6 (>= 2.7)
Section: science
Priority: optional
Homepage: http://bioinformatics.hungry.com/clearcut/
Description: extremely efficient phylogenetic tree reconstruction
Clearcut is the reference implementation for the Relaxed Neighbor Joining (RNJ)
algorithm by J. Evans, L. Sheneman, and J. Foster from the Initiative
for Bioinformatics and Evolutionary Studies (IBEST) at the University of
Idaho.
drwxr-xr-x root/root 0 2019-03-29 05:16 ./
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/bin/
-rwxr-xr-x root/root 76064 2019-03-29 05:16 ./usr/bin/clearcut
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/share/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/share/doc/clearcut/
-rw-r--r-- root/root 2416 2009-02-09 21:31 ./usr/share/doc/clearcut/README.gz
-rw-r--r-- root/root 602 2019-03-29 05:16 ./usr/share/doc/clearcut/changelog.Debian.gz
-rw-r--r-- root/root 3101 2019-03-29 05:16 ./usr/share/doc/clearcut/copyright
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/share/doc/clearcut/examples/
-rw-r--r-- root/root 322 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/alignment1.dist
-rw-r--r-- root/root 116 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/lower_diag.dist
-rw-r--r-- root/root 211 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/symmetric.dist
-rw-r--r-- root/root 1126705 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/treezilla.dist
-rw-r--r-- root/root 154 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/upper_diag.dist
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/share/man/
drwxr-xr-x root/root 0 2019-03-29 05:16 ./usr/share/man/man1/
-rw-r--r-- root/root 919 2019-03-29 05:16 ./usr/share/man/man1/clearcut.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 3284
Build-Time: 49
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 290
Job: clearcut_1.0.9-4
Machine Architecture: armhf
Package: clearcut
Package-Time: 394
Source-Version: 1.0.9-4
Space: 3284
Status: successful
Version: 1.0.9-4
--------------------------------------------------------------------------------
Finished at 2019-07-09T04:57:24Z
Build needed 00:06:34, 3284k disc space