clearcut →
1.0.9-3 →
armhf → 2018-10-25 04:49:52
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| clearcut 1.0.9-3 (armhf) Thu, 25 Oct 2018 04:46:31 +0000 |
+==============================================================================+
Package: clearcut
Version: 1.0.9-3
Source Version: 1.0.9-3
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-09cd0620-dabd-42db-b799-0d48963ba102' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.0 MB in 15s (1558 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'clearcut' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/clearcut.git
Please use:
git clone https://salsa.debian.org/med-team/clearcut.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 356 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main clearcut 1.0.9-3 (dsc) [1969 B]
Get:2 http://172.17.0.1/private buster-staging/main clearcut 1.0.9-3 (tar) [350 kB]
Get:3 http://172.17.0.1/private buster-staging/main clearcut 1.0.9-3 (diff) [4340 B]
Fetched 356 kB in 0s (1865 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/clearcut-QlIJ2t/clearcut-1.0.9' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/clearcut-QlIJ2t' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-0RxovI/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-0RxovI/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-0RxovI/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (10.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15767 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~)
Filtered Build-Depends: debhelper (>= 11~)
dpkg-deb: building package 'sbuild-build-depends-clearcut-dummy' in '/<<BUILDDIR>>/resolver-0RxovI/apt_archive/sbuild-build-depends-clearcut-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-clearcut-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ Sources [489 B]
Get:5 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ Packages [567 B]
Fetched 2389 B in 0s (12.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install clearcut build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libgraphite2-3
libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libtool libxml2 m4 man-db po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0 libgraphite2-3
libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1 libpipeline1
libsigsegv2 libtool libxml2 m4 man-db po-debconf
sbuild-build-depends-clearcut-dummy
0 upgraded, 35 newly installed, 0 to remove and 38 not upgraded.
Need to get 18.6 MB/19.2 MB of archives.
After this operation, 67.0 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-0RxovI/apt_archive ./ sbuild-build-depends-clearcut-dummy 0.invalid.0 [852 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2+b1 [1160 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-8 [117 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-1.1 [771 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-8 [434 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.043-2 [20.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.043-2 [12.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.9.0-1+rpi1 [877 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-8 [1220 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.4.1 [989 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libbsd0:armhf.
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Setting up libarchive-zip-perl (1.64-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.58.1-2) ...
No schema files found: removed existing output file.
Setting up gettext-base (0.19.8.1-8) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up libfreetype6:armhf (2.8.1-2) ...
Setting up libmagic-mgc (1:5.34-2) ...
Setting up libmagic1:armhf (1:5.34-2) ...
Setting up libgraphite2-3:armhf (1.3.12-1) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-8) ...
Setting up libfile-stripnondeterminism-perl (0.043-2) ...
Setting up libharfbuzz0b:armhf (1.9.0-1+rpi1) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.34-2) ...
Setting up automake (1:1.16.1-1.1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.8.4-2+b1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-6) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up gettext (0.19.8.1-8) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.20) ...
Setting up debhelper (11.4.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (0.043-2) ...
Setting up sbuild-build-depends-clearcut-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-6+rpi1 dpkg-dev_1.19.0.5 g++-8_8.2.0-7+rpi1 gcc-8_8.2.0-7+rpi1 libc6-dev_2.27-6+rpi1 libstdc++-8-dev_8.2.0-7+rpi1 libstdc++6_8.2.0-7+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.118 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-1.1 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-6+rpi1 binutils-arm-linux-gnueabihf_2.31.1-6+rpi1 binutils-common_2.31.1-6+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.2.0-7+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.4.1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.043-2 diffutils_1:3.6-1 dirmngr_2.2.10-3+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20180808-2 g++_4:8.1.0-1+rpi1 g++-8_8.2.0-7+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-7+rpi1 gcc-8-base_8.2.0-7+rpi1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gnupg_2.2.10-3+rpi1 gnupg-agent_2.2.10-3+rpi1 gnupg-l10n_2.2.10-3+rpi1 gnupg-utils_2.2.10-3+rpi1 gpg_2.2.10-3+rpi1 gpg-agent_2.2.10-3+rpi1 gpg-wks-client_2.2.10-3+rpi1 gpg-wks-server_2.2.10-3+rpi1 gpgconf_2.2.10-3+rpi1 gpgsm_2.2.10-3+rpi1 gpgv_2.2.10-3+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.54 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13-8 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-7+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-7+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-6+rpi1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.27-6+rpi1 libc-dev-bin_2.27-6+rpi1 libc6_2.27-6+rpi1 libc6-dev_2.27-6+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-7+rpi1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.10-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.94-1+rpi1 libdrm2_2.4.94-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.043-2 libfreetype6_2.8.1-2 libgcc-8-dev_8.2.0-7+rpi1 libgcc1_1:8.2.0-7+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.18-2 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgdbm6_1.18-2 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1 libgomp1_8.2.0-7+rpi1 libgpg-error0_1.32-1 libgraphite2-3_1.3.12-1 libgssapi-krb5-2_1.16.1-1 libharfbuzz0b_1.9.0-1+rpi1 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 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libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.2-1 libss2_1.44.4-2 libssl1.1_1.1.0h-4 libstdc++-8-dev_8.2.0-7+rpi1 libstdc++6_8.2.0-7+rpi1 libsystemd0_239-10+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20180714-1 libtinfo6_6.1+20180714-1 libtool_2.4.6-6 libubsan1_8.2.0-7+rpi1 libudev1_239-10+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-2+b1 mawk_1.3.3-17 mount_2.32.1-0.1 multiarch-support_2.27-6+rpi1 nano_3.1-1 ncurses-base_6.1+20180714-1 ncurses-bin_6.1+20180714-1 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-clearcut-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-10+rpi1 systemd-sysv_239-10+rpi1 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_239-10+rpi1 util-linux_2.32.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 19 13:56:10 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./clearcut_1.0.9-3.dsc
dpkg-source: info: extracting clearcut in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking clearcut_1.0.9.orig.tar.gz
dpkg-source: info: unpacking clearcut_1.0.9-3.debian.tar.xz
dpkg-source: info: applying mothur_trivial_patch
dpkg-source: info: applying hardening.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-09cd0620-dabd-42db-b799-0d48963ba102
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package clearcut
dpkg-buildpackage: info: source version 1.0.9-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build clearcut-1.0.9
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f *.o a.out *.a clearcut
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer clearcut.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer dist.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer dmat.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer fasta.c
fasta.c: In function 'NJ_read_fasta':
fasta.c:307:19: warning: variable 'x' set but not used [-Wunused-but-set-variable]
long int index, x, seq;
^
dist.c: In function 'NJ_DNA_jc_correction':
dist.c:268:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
long int k;
^
clearcut.c: In function 'NJ_neighbor_joining':
clearcut.c:1106:9: warning: variable 'min' set but not used [-Wunused-but-set-variable]
float min;
^~~
clearcut.c: In function 'NJ_relaxed_nj':
clearcut.c:1224:12: warning: variable 'q' set but not used [-Wunused-but-set-variable]
float p, q, x;
^
dist.c: In function 'NJ_compute_dmat':
dist.c:154:5: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation]
strncpy(dmat->taxaname[i], alignment->titles[i], strlen(alignment->titles[i]));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer cmdargs.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer prng.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer getopt_long.c
gcc -o clearcut clearcut.o dist.o dmat.o fasta.o cmdargs.o prng.o getopt_long.o -lm -Wl,-z,relro
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -X.dist
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'clearcut' in '../clearcut_1.0.9-3_armhf.deb'.
dpkg-deb: building package 'clearcut-dbgsym' in '../clearcut-dbgsym_1.0.9-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../clearcut_1.0.9-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build clearcut-1.0.9
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-10-25T04:49:51Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
clearcut_1.0.9-3_armhf.changes:
-------------------------------
Format: 1.8
Date: Fri, 19 Oct 2018 15:49:31 +0200
Source: clearcut
Binary: clearcut
Architecture: armhf
Version: 1.0.9-3
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
clearcut - extremely efficient phylogenetic tree reconstruction
Changes:
clearcut (1.0.9-3) unstable; urgency=medium
.
[ Steffen Moeller ]
* debian/upstream/metadata:
- yamllint cleanliness
- added references to registries
.
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Secure URI in copyright format
Checksums-Sha1:
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9b7f647a7c3afee4da7c0799f026896ec6319979 4598 clearcut_1.0.9-3_armhf.buildinfo
a22a4f343a3d75f9f36447cb7e1ebf4b9f3f0368 276024 clearcut_1.0.9-3_armhf.deb
Checksums-Sha256:
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42454f02fc2c8cafd034fa5ae8f6b5b95c7811ed573c550f150bb0096908b121 4598 clearcut_1.0.9-3_armhf.buildinfo
3d1bc202eb5fcb31202497d31010053f5713f95dc29da35b27be682cf594c7c7 276024 clearcut_1.0.9-3_armhf.deb
Files:
56be279918e6c55fda98d6da69e5c30e 4216 debug optional clearcut-dbgsym_1.0.9-3_armhf.deb
ae55e6df927ddb64238814ab9857a66d 4598 science optional clearcut_1.0.9-3_armhf.buildinfo
0ec16ca7fe3910a823cace488453c089 276024 science optional clearcut_1.0.9-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
clearcut-dbgsym_1.0.9-3_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 4216 bytes: control archive=536 bytes.
373 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: clearcut-dbgsym
Source: clearcut
Version: 1.0.9-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 21
Depends: clearcut (= 1.0.9-3)
Section: debug
Priority: optional
Description: debug symbols for clearcut
Build-Ids: dbda828085fc86b76f6dbb9239895595a5f9877c
drwxr-xr-x root/root 0 2018-10-19 13:49 ./
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/lib/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/lib/debug/.build-id/db/
-rw-r--r-- root/root 10376 2018-10-19 13:49 ./usr/lib/debug/.build-id/db/da828085fc86b76f6dbb9239895595a5f9877c.debug
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/share/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-10-19 13:49 ./usr/share/doc/clearcut-dbgsym -> clearcut
clearcut_1.0.9-3_armhf.deb
--------------------------
new Debian package, version 2.0.
size 276024 bytes: control archive=984 bytes.
574 bytes, 14 lines control
737 bytes, 10 lines md5sums
Package: clearcut
Version: 1.0.9-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1199
Depends: libc6 (>= 2.7)
Section: science
Priority: optional
Homepage: http://bioinformatics.hungry.com/clearcut/
Description: extremely efficient phylogenetic tree reconstruction
Clearcut is the reference implementation for the Relaxed Neighbor Joining (RNJ)
algorithm by J. Evans, L. Sheneman, and J. Foster from the Initiative
for Bioinformatics and Evolutionary Studies (IBEST) at the University of
Idaho.
drwxr-xr-x root/root 0 2018-10-19 13:49 ./
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/bin/
-rwxr-xr-x root/root 76064 2018-10-19 13:49 ./usr/bin/clearcut
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/share/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/share/doc/clearcut/
-rw-r--r-- root/root 2416 2009-02-09 21:31 ./usr/share/doc/clearcut/README.gz
-rw-r--r-- root/root 487 2018-10-19 13:49 ./usr/share/doc/clearcut/changelog.Debian.gz
-rw-r--r-- root/root 3101 2018-10-19 13:49 ./usr/share/doc/clearcut/copyright
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/share/doc/clearcut/examples/
-rw-r--r-- root/root 322 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/alignment1.dist
-rw-r--r-- root/root 116 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/lower_diag.dist
-rw-r--r-- root/root 211 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/symmetric.dist
-rw-r--r-- root/root 1126705 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/treezilla.dist
-rw-r--r-- root/root 154 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/upper_diag.dist
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/share/man/
drwxr-xr-x root/root 0 2018-10-19 13:49 ./usr/share/man/man1/
-rw-r--r-- root/root 919 2018-10-19 13:49 ./usr/share/man/man1/clearcut.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 3396
Build-Time: 15
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 164
Job: clearcut_1.0.9-3
Machine Architecture: armhf
Package: clearcut
Package-Time: 200
Source-Version: 1.0.9-3
Space: 3396
Status: successful
Version: 1.0.9-3
--------------------------------------------------------------------------------
Finished at 2018-10-25T04:49:51Z
Build needed 00:03:20, 3396k disk space