clearcut →
1.0.9-1 →
armhf → 2014-03-10 06:10:29
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-03
╔══════════════════════════════════════════════════════════════════════════════╗
║ clearcut 1.0.9-1 (armhf) 10 Mar 2014 06:10 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: clearcut
Version: 1.0.9-1
Source Version: 1.0.9-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/clearcut-oNcsbi/clearcut-1.0.9' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/clearcut-oNcsbi' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-03385ec4-b23e-41d1-b14f-df70c84147a8' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7311 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8468 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 15.8 MB in 37s (425 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'clearcut' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/clearcut/trunk/
Need to get 356 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main clearcut 1.0.9-1 (dsc) [1975 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main clearcut 1.0.9-1 (tar) [350 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main clearcut 1.0.9-1 (diff) [4276 B]
Fetched 356 kB in 0s (3600 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-LMpiun/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded.
Need to get 0 B/818 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11599 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9)
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9)
dpkg-deb: building package `sbuild-build-depends-clearcut-dummy' in `/«BUILDDIR»/resolver-RPfHhj/apt_archive/sbuild-build-depends-clearcut-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install clearcut build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils debhelper file gettext gettext-base groff-base intltool-debian
libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1 libpipeline1
libunistring0 libxml2 man-db po-debconf
Suggested packages:
wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils debhelper file gettext gettext-base groff-base intltool-debian
libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1 libpipeline1
libunistring0 libxml2 man-db po-debconf sbuild-build-depends-clearcut-dummy
0 upgraded, 18 newly installed, 0 to remove and 7 not upgraded.
Need to get 8105 kB/8106 kB of archives.
After this operation, 22.5 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.6-2 [20.3 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-5 [962 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.6-1 [961 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.2-1 [29.0 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.17-1 [225 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-12 [17.4 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.38.2-5 [2073 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.17-1 [55.3 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.2-1 [112 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.2-1 [1137 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20140228 [691 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 8105 kB in 2s (4025 kB/s)
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 11599 files and directories currently installed.)
Preparing to unpack .../libpipeline1_1.2.6-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.2.6-2) ...
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Preparing to unpack .../groff-base_1.22.2-5_armhf.deb ...
Unpacking groff-base (1.22.2-5) ...
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Preparing to unpack .../bsdmainutils_9.0.5_armhf.deb ...
Unpacking bsdmainutils (9.0.5) ...
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Preparing to unpack .../man-db_2.6.6-1_armhf.deb ...
Unpacking man-db (2.6.6-1) ...
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Preparing to unpack .../libasprintf0c2_0.18.3.2-1_armhf.deb ...
Unpacking libasprintf0c2:armhf (0.18.3.2-1) ...
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Preparing to unpack .../libmagic1_1%3a5.17-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.17-1) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.1+dfsg1-3_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-3) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.0.13-12_armhf.deb ...
Unpacking libffi6:armhf (3.0.13-12) ...
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Preparing to unpack .../libglib2.0-0_2.38.2-5_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.38.2-5) ...
Selecting previously unselected package libcroco3:armhf.
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Selecting previously unselected package file.
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Unpacking file (1:5.17-1) ...
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Unpacking gettext-base (0.18.3.2-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.18.3.2-1_armhf.deb ...
Unpacking gettext (0.18.3.2-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.1) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
Unpacking po-debconf (1.0.16+nmu2) ...
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Preparing to unpack .../debhelper_9.20140228_all.deb ...
Unpacking debhelper (9.20140228) ...
Selecting previously unselected package sbuild-build-depends-clearcut-dummy.
Preparing to unpack .../sbuild-build-depends-clearcut-dummy.deb ...
Unpacking sbuild-build-depends-clearcut-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.2.6-2) ...
Setting up groff-base (1.22.2-5) ...
Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.6-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.18.3.2-1) ...
Setting up libmagic1:armhf (1:5.17-1) ...
Setting up libxml2:armhf (2.9.1+dfsg1-3) ...
Setting up libffi6:armhf (3.0.13-12) ...
Setting up libglib2.0-0:armhf (2.38.2-5) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up file (1:5.17-1) ...
Setting up gettext-base (0.18.3.2-1) ...
Setting up gettext (0.18.3.2-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20140228) ...
Setting up sbuild-build-depends-clearcut-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.18-4) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.13-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6+rpi1 g++-4.8_4.8.2-16 gcc-4.8_4.8.2-16 libc6-dev_2.18-4 libstdc++-4.8-dev_4.8.2-16 libstdc++6_4.8.2-16 linux-libc-dev_3.12.6-2+rpi1
Package versions: apt_0.9.15.4 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-16 dash_0.5.7-4 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20140228 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.17.6+rpi1 dpkg-dev_1.17.6+rpi1 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.18.4-2 file_1:5.17-1 findutils_4.4.2-7 g++_4:4.8.2-2 g++-4.8_4.8.2-16 gcc_4:4.8.2-2 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-10+rpi1 gcc-4.8_4.8.2-16 gcc-4.8-base_4.8.2-16 gettext_0.18.3.2-1 gettext-base_0.18.3.2-1 gnupg_1.4.16-1.1 gpgv_1.4.16-1.1 grep_2.16-1 groff-base_1.22.2-5 gzip_1.6-3 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-51 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.2-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_0.9.15.4 libasan0_4.8.2-16 libasprintf0c2_0.18.3.2-1 libatomic1_4.8.2-16 libattr1_1:2.4.47-1 libaudit-common_1:2.3.3-4 libaudit1_1:2.3.3-4 libblkid1_2.20.1-5.6 libbz2-1.0_1.0.6-5 libc-bin_2.18-4 libc-dev-bin_2.18-4 libc6_2.18-4 libc6-dev_2.18-4 libcap2_1:2.22-1.2 libcloog-isl4_0.18.2-1 libcomerr2_1.42.9-3 libcroco3_0.6.8-2 libdb5.1_5.1.29-6 libdb5.3_5.3.28-3 libdbus-1-3_1.8.0-1 libdpkg-perl_1.17.6+rpi1 libffi6_3.0.13-12 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-16 libgcc1_1:4.8.2-16 libgdbm3_1.8.3-12 libglib2.0-0_2.38.2-5 libgmp10_2:5.1.3+dfsg-1 libgomp1_4.8.2-16 libisl10_0.12.2-1 libklibc_2.0.2-1+rpi1 libkmod2_16-2 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.17-1 libmount1_2.20.1-5.6 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20140118-1 libncursesw5_5.9+20140118-1 libpam-modules_1.1.8-2 libpam-modules-bin_1.1.8-2 libpam-runtime_1.1.8-2 libpam0g_1.1.8-2 libpcre3_1:8.31-2 libpipeline1_1.2.6-2 libprocps0_1:3.3.4-2 libprocps3_1:3.3.9-2 libreadline6_6.2+dfsg-0.1 libselinux1_2.2.2-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libslang2_2.2.4-16 libss2_1.42.9-3 libstdc++-4.8-dev_4.8.2-16 libstdc++6_4.8.2-16 libtext-charwidth-perl_0.04-7+b3 libtext-iconv-perl_1.7-5+b3 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-1 libtinfo5_5.9+20140118-1 libudev1_204-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.6 libxml2_2.9.1+dfsg1-3 linux-libc-dev_3.12.6-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.6-1 mawk_1.3.3-17 mount_2.20.1-5.6 multiarch-support_2.18-4 nano_2.2.6-1 ncurses-base_5.9+20140118-1 ncurses-bin_5.9+20140118-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.2-2 perl-base_5.18.2-2 perl-modules_5.18.2-2 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.9-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-clearcut-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 sysv-rc_2.88dsf-51 sysvinit_2.88dsf-51 sysvinit-core_2.88dsf-51 sysvinit-utils_2.88dsf-51 tar_1.27.1-1 tzdata_2013i-1 udev_204-7 util-linux_2.20.1-5.6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Feb 28 00:16:27 2014 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./clearcut_1.0.9-1.dsc
dpkg-source: info: extracting clearcut in clearcut-1.0.9
dpkg-source: info: unpacking clearcut_1.0.9.orig.tar.gz
dpkg-source: info: unpacking clearcut_1.0.9-1.debian.tar.xz
dpkg-source: info: applying mothur_trivial_patch
dpkg-source: info: applying hardening.patch
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-03385ec4-b23e-41d1-b14f-df70c84147a8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package clearcut
dpkg-buildpackage: source version 1.0.9-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build clearcut-1.0.9
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make[1]: Entering directory `/«PKGBUILDDIR»'
rm -f *.o a.out *.a clearcut
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_auto_configure -a
dh_auto_build -a
make[1]: Entering directory `/«PKGBUILDDIR»'
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer clearcut.c
clearcut.c: In function 'NJ_neighbor_joining':
clearcut.c:1106:9: warning: variable 'min' set but not used [-Wunused-but-set-variable]
float min;
^
clearcut.c: In function 'NJ_relaxed_nj':
clearcut.c:1224:12: warning: variable 'q' set but not used [-Wunused-but-set-variable]
float p, q, x;
^
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer dist.c
dist.c: In function 'NJ_DNA_jc_correction':
dist.c:268:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
long int k;
^
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer dmat.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer fasta.c
fasta.c: In function 'NJ_read_fasta':
fasta.c:307:19: warning: variable 'x' set but not used [-Wunused-but-set-variable]
long int index, x, seq;
^
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer cmdargs.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer prng.c
gcc -c -I /usr/local/include -O3 -Wall -funroll-loops -fomit-frame-pointer getopt_long.c
gcc -o clearcut clearcut.o dist.o dmat.o fasta.o cmdargs.o prng.o getopt_long.o -lm -Wl,-z,relro
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
dh_installman -a
dh_perl -a
dh_link -a
debian/rules override_dh_compress
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_compress -X.dist
make[1]: Leaving directory `/«PKGBUILDDIR»'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package `clearcut' in `../clearcut_1.0.9-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../clearcut_1.0.9-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build clearcut-1.0.9
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140310-0614
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
clearcut_1.0.9-1_armhf.changes:
───────────────────────────────
Format: 1.8
Date: Thu, 27 Feb 2014 17:11:16 +0000
Source: clearcut
Binary: clearcut
Architecture: armhf
Version: 1.0.9-1
Distribution: jessie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
clearcut - extremely efficient phylogenetic tree reconstruction
Closes: 740298
Changes:
clearcut (1.0.9-1) unstable; urgency=medium
.
* Initial upload to Debian (Closes: #740298)
Checksums-Sha1:
49d5053d903c4d7fc42db2979054cf5b70f68788 273298 clearcut_1.0.9-1_armhf.deb
Checksums-Sha256:
e0847c48d56a0c146bbcf7473e9bf184eccc2dd95505dd9ff29f730e94cfe559 273298 clearcut_1.0.9-1_armhf.deb
Files:
3ed5ada955420ce98ad0245838e0a0fa 273298 science optional clearcut_1.0.9-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
clearcut_1.0.9-1_armhf.deb
──────────────────────────
new debian package, version 2.0.
size 273298 bytes: control archive=970 bytes.
574 bytes, 14 lines control
737 bytes, 10 lines md5sums
Package: clearcut
Version: 1.0.9-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1175
Depends: libc6 (>= 2.7)
Section: science
Priority: optional
Homepage: http://bioinformatics.hungry.com/clearcut/
Description: extremely efficient phylogenetic tree reconstruction
Clearcut is the reference implementation for the Relaxed Neighbor Joining (RNJ)
algorithm by J. Evans, L. Sheneman, and J. Foster from the Initiative
for Bioinformatics and Evolutionary Studies (IBEST) at the University of
Idaho.
drwxr-xr-x root/root 0 2014-03-10 06:13 ./
drwxr-xr-x root/root 0 2014-03-10 06:13 ./usr/
drwxr-xr-x root/root 0 2014-03-10 06:13 ./usr/bin/
-rwxr-xr-x root/root 67812 2014-03-10 06:13 ./usr/bin/clearcut
drwxr-xr-x root/root 0 2014-03-10 06:13 ./usr/share/
drwxr-xr-x root/root 0 2014-03-10 06:13 ./usr/share/doc/
drwxr-xr-x root/root 0 2014-03-10 06:13 ./usr/share/doc/clearcut/
-rw-r--r-- root/root 3100 2014-02-27 23:45 ./usr/share/doc/clearcut/copyright
drwxr-xr-x root/root 0 2014-03-10 06:13 ./usr/share/doc/clearcut/examples/
-rw-r--r-- root/root 322 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/alignment1.dist
-rw-r--r-- root/root 116 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/lower_diag.dist
-rw-r--r-- root/root 211 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/symmetric.dist
-rw-r--r-- root/root 1126705 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/treezilla.dist
-rw-r--r-- root/root 154 2009-02-09 21:30 ./usr/share/doc/clearcut/examples/upper_diag.dist
-rw-r--r-- root/root 2416 2009-02-09 21:31 ./usr/share/doc/clearcut/README.gz
-rw-r--r-- root/root 245 2014-02-28 00:15 ./usr/share/doc/clearcut/changelog.Debian.gz
drwxr-xr-x root/root 0 2014-03-10 06:13 ./usr/share/man/
drwxr-xr-x root/root 0 2014-03-10 06:13 ./usr/share/man/man1/
-rw-r--r-- root/root 970 2014-03-10 06:13 ./usr/share/man/man1/clearcut.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 3176
Build-Time: 52
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 126
Job: clearcut_1.0.9-1
Machine Architecture: armhf
Package: clearcut
Package-Time: 236
Source-Version: 1.0.9-1
Space: 3176
Status: successful
Version: 1.0.9-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20140310-0614
Build needed 00:03:56, 3176k disc space