cif-tools →
1.0.0-4 →
armhf → 2021-11-04 06:58:11
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| cif-tools 1.0.0-4 (armhf) Thu, 04 Nov 2021 06:41:25 +0000 |
+==============================================================================+
Package: cif-tools
Version: 1.0.0-4
Source Version: 1.0.0-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-901db2df-2fd4-4513-bceb-792869ac5aea' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.5 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
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+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'cif-tools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/cif-tools.git
Please use:
git clone https://salsa.debian.org/med-team/cif-tools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 115 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main cif-tools 1.0.0-4 (dsc) [2190 B]
Get:2 http://172.17.0.1/private bookworm-staging/main cif-tools 1.0.0-4 (tar) [108 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main cif-tools 1.0.0-4 (diff) [4244 B]
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I: NOTICE: Log filtering will replace 'build/cif-tools-MLwtA0/cif-tools-1.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/cif-tools-MLwtA0' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
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Setup apt archive
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-pcV68B/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-pcV68B/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-pcV68B/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
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Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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| Check architectures |
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Arch check ok (armhf included in any)
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: autoconf-archive, debhelper-compat (= 13), libboost-date-time-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libcifpp-dev (>= 1.0.1-4~), pkg-config
Filtered Build-Depends: autoconf-archive, debhelper-compat (= 13), libboost-date-time-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libcifpp-dev (>= 1.0.1-4~), pkg-config
dpkg-deb: building package 'sbuild-build-depends-cif-tools-dummy' in '/<<BUILDDIR>>/resolver-pcV68B/apt_archive/sbuild-build-depends-cif-tools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-cif-tools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
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Get:3 copy:/<<BUILDDIR>>/resolver-pcV68B/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-pcV68B/apt_archive ./ Sources [569 B]
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Reading package lists...
Install cif-tools build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-dev libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libcifpp-data libcifpp-dev libcifpp1
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libicu-dev libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config
po-debconf sensible-utils
Suggested packages:
gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev
libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev
libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev
libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
icu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor
less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0
libboost-dev libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-program-options-dev
libboost-program-options1.74-dev libboost-program-options1.74.0
libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev
libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev
libboost-system1.74.0 libboost1.74-dev libcifpp-data libcifpp-dev libcifpp1
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libicu-dev libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config
po-debconf sbuild-build-depends-cif-tools-dummy sensible-utils
0 upgraded, 58 newly installed, 0 to remove and 1 not upgraded.
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Get:58 http://172.17.0.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
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update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
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Setting up libsigsegv2:armhf (2.13-1) ...
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Setting up autopoint (0.21-4) ...
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Setting up libuchardet0:armhf (0.0.7-1) ...
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Setting up libboost-date-time1.74.0:armhf (1.74.0-9) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libicu-dev:armhf (67.1-7) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
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Setting up m4 (1.4.18-5) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up dh-autoreconf (20) ...
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Setting up debhelper (13.5.2) ...
Setting up libboost-iostreams-dev:armhf (1.74.0.3+b1) ...
Setting up sbuild-build-depends-cif-tools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-11+rpi1 gcc-10_10.3.0-11+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 linux-libc-dev_5.14.9-2+rpi1
Package versions: adduser_3.118 apt_2.3.11 autoconf_2.71-2 autoconf-archive_20210219-2 automake_1:1.16.5-1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-4 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-11+rpi1 dash_0.5.11+git20210903+057cd650a4ed-1 debconf_1.5.78 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-11+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-11+rpi1 gcc-10-base_10.3.0-11+rpi1 gcc-11-base_11.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libasan6_11.2.0-10+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-10+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libbinutils_2.37-5+rpi1 libblkid1_2.37.2-4 libboost-date-time-dev_1.74.0.3+b1 libboost-date-time1.74-dev_1.74.0-9 libboost-date-time1.74.0_1.74.0-9 libboost-dev_1.74.0.3+b1 libboost-iostreams-dev_1.74.0.3+b1 libboost-iostreams1.74-dev_1.74.0-9 libboost-iostreams1.74.0_1.74.0-9 libboost-program-options-dev_1.74.0.3+b1 libboost-program-options1.74-dev_1.74.0-9 libboost-program-options1.74.0_1.74.0-9 libboost-regex1.74-dev_1.74.0-9 libboost-regex1.74.0_1.74.0-9 libboost-serialization1.74-dev_1.74.0-9 libboost-serialization1.74.0_1.74.0-9 libboost-system-dev_1.74.0.3+b1 libboost-system1.74-dev_1.74.0-9 libboost-system1.74.0_1.74.0-9 libboost1.74-dev_1.74.0-9 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-10+rpi1 libcifpp-data_1.0.1-5 libcifpp-dev_1.0.1-5 libcifpp1_1.0.1-5 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi8_3.4.2-3 libfile-stripnondeterminism-perl_1.12.0-2 libgcc-10-dev_10.3.0-11+rpi1 libgcc-s1_11.2.0-10+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libglib2.0-0_2.70.0-3 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-10+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.24-2 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.3-1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.2-2+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-4 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-11+rpi1 libstdc++6_11.2.0-10+rpi1 libsub-override-perl_0.09-2 libsystemd0_249.5-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_249.5-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-4 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.9-2+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-cif-tools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 util-linux_2.37.2-4 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Zhm55xWw/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 1 14:28:00 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "nilesh@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./cif-tools_1.0.0-4.dsc
dpkg-source: info: extracting cif-tools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking cif-tools_1.0.0.orig.tar.gz
dpkg-source: info: unpacking cif-tools_1.0.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying makefile
dpkg-source: info: applying spelling-errors
dpkg-source: info: applying configure-patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-901db2df-2fd4-4513-bceb-792869ac5aea
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package cif-tools
dpkg-buildpackage: info: source version 1.0.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config/m4': No such file or directory
configure.ac:62: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:62: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:62: the top level
configure.ac:62: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:62: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2894: _AC_LINK_IFELSE is expanded from...
./lib/autoconf/general.m4:2911: AC_LINK_IFELSE is expanded from...
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
configure.ac:62: the top level
configure.ac:133: warning: AC_OUTPUT should be used without arguments.
configure.ac:133: You should run autoupdate.
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --disable-resources --disable-revision
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-resources --disable-revision
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether g++ supports C++17 features with -std=c++17... yes
checking whether C++ compiler accepts -fstandalone-debug... no
checking for a BSD-compatible install... /usr/bin/install -c
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for gcc... gcc
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for a sed that does not truncate output... /bin/sed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc is Clang... no
checking whether pthreads work with "-pthread" and "-lpthread"... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking for mrc... no
configure: WARNING: The mrc application was not found, not using resources.
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for filesystem... yes
checking for boostlib >= 1.65.1 (106501)... yes
checking whether the Boost::IOStreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking whether the Boost::Program_Options library is available... yes
checking for exit in -lboost_program_options... yes
checking whether the Boost::Date_Time library is available... yes
checking for exit in -lboost_date_time... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for pkg-config... /usr/bin/pkg-config
checking for libcifpp ... yes
configure: creating ./config.status
config.status: creating GNUmakefile
config.status: creating src/config.hpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p obj
>> src/pdb2cif.cpp
>> src/cif2pdb.cpp
>> src/cif-diff.cpp
>> src/cif-drop.cpp
>> src/cif-grep.cpp
>> src/cif-merge.cpp
>> src/cif-validate.cpp
>> src/mmCQL.cpp
>> src/pr-main.cpp
-> cif2pdb
-> pdb2cif
-> cif-diff
-> cif-drop
-> cif-grep
-> cif-merge
-> cif-validate
-> mmCQL
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 test VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cif-diff.o cif-drop.o cif-grep.o cif-merge.o cif-validate.o cif2pdb.o mmCQL.o pdb2cif.o pr-main.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install --destdir=debian/cif-tools/ -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/cif-tools AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
install -d /<<PKGBUILDDIR>>/debian/cif-tools/usr/bin
for p in pdb2cif cif2pdb cif-diff cif-drop cif-grep cif-merge cif-validate mmCQL; do install $p /<<PKGBUILDDIR>>/debian/cif-tools/usr/bin/$p; done
install -d /<<PKGBUILDDIR>>/debian/cif-tools/usr/share/man/man1
for p in pdb2cif cif2pdb cif-diff cif-drop cif-grep cif-merge cif-validate mmCQL; do \
install -m 644 doc/${p}.1 /<<PKGBUILDDIR>>/debian/cif-tools/usr/share/man/man1/${p}.1; \
gzip /<<PKGBUILDDIR>>/debian/cif-tools/usr/share/man/man1/${p}.1; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-merge contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-validate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif2pdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-grep contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/mmCQL contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-drop contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/pdb2cif contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cif-tools/usr/bin/cif-merge debian/cif-tools/usr/bin/cif-diff debian/cif-tools/usr/bin/cif-validate debian/cif-tools/usr/bin/cif2pdb debian/cif-tools/usr/bin/cif-grep debian/cif-tools/usr/bin/mmCQL debian/cif-tools/usr/bin/cif-drop debian/cif-tools/usr/bin/pdb2cif were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'cif-tools' in '../cif-tools_1.0.0-4_armhf.deb'.
dpkg-deb: building package 'cif-tools-dbgsym' in '../cif-tools-dbgsym_1.0.0-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../cif-tools_1.0.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-11-04T06:58:00Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
cif-tools_1.0.0-4_armhf.changes:
--------------------------------
Format: 1.8
Date: Mon, 01 Nov 2021 19:49:48 +0530
Source: cif-tools
Binary: cif-tools cif-tools-dbgsym
Architecture: armhf
Version: 1.0.0-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
cif-tools - Suite of tools to manipulate, validate and query mmCIF files
Closes: 984015
Changes:
cif-tools (1.0.0-4) unstable; urgency=medium
.
* Team upload.
* Tighten B-D and test-dep on libcifpp-dev to build with
(gcc11-)fixed version of the same (Closes: #984015)
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Files:
71116b881e70d44e402c2f8b6d28b449 8232628 debug optional cif-tools-dbgsym_1.0.0-4_armhf.deb
db960adc1b1021f0798f3876ded903a1 5876 science optional cif-tools_1.0.0-4_armhf.buildinfo
5b1549e60c00cb347270300bc838a45c 280700 science optional cif-tools_1.0.0-4_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
cif-tools-dbgsym_1.0.0-4_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 8232628 bytes: control archive=956 bytes.
666 bytes, 12 lines control
937 bytes, 9 lines md5sums
Package: cif-tools-dbgsym
Source: cif-tools
Version: 1.0.0-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8937
Depends: cif-tools (= 1.0.0-4)
Section: debug
Priority: optional
Description: debug symbols for cif-tools
Build-Ids: 13e11d49817fa765edd7fe040eb1658bfc4d4e2f 2fd70491eadb0802b9ed201d31304bd6eba7f065 4f6577e54b81934cb8ff36fb6057bdab7f5e6b52 7082c55b374a3d6fd22c61ddc51f2df98f78eceb 82ecd168d9e59125bb16e2715c21d4f13b25d2ba 94b37ff56cfdfc8fb96f7af0ef632e601b357bf2 d4b026e8d187db9265a0bc5e8f11fe5512d57994 fb2b44e8f27fe1e150050ca64dd765c5691b1a01
drwxr-xr-x root/root 0 2021-11-01 14:19 ./
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/13/
-rw-r--r-- root/root 865908 2021-11-01 14:19 ./usr/lib/debug/.build-id/13/e11d49817fa765edd7fe040eb1658bfc4d4e2f.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/2f/
-rw-r--r-- root/root 1424656 2021-11-01 14:19 ./usr/lib/debug/.build-id/2f/d70491eadb0802b9ed201d31304bd6eba7f065.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/4f/
-rw-r--r-- root/root 1333084 2021-11-01 14:19 ./usr/lib/debug/.build-id/4f/6577e54b81934cb8ff36fb6057bdab7f5e6b52.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/70/
-rw-r--r-- root/root 739028 2021-11-01 14:19 ./usr/lib/debug/.build-id/70/82c55b374a3d6fd22c61ddc51f2df98f78eceb.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/82/
-rw-r--r-- root/root 971524 2021-11-01 14:19 ./usr/lib/debug/.build-id/82/ecd168d9e59125bb16e2715c21d4f13b25d2ba.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/94/
-rw-r--r-- root/root 1066676 2021-11-01 14:19 ./usr/lib/debug/.build-id/94/b37ff56cfdfc8fb96f7af0ef632e601b357bf2.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/d4/
-rw-r--r-- root/root 1096704 2021-11-01 14:19 ./usr/lib/debug/.build-id/d4/b026e8d187db9265a0bc5e8f11fe5512d57994.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.build-id/fb/
-rw-r--r-- root/root 1091104 2021-11-01 14:19 ./usr/lib/debug/.build-id/fb/2b44e8f27fe1e150050ca64dd765c5691b1a01.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 540448 2021-11-01 14:19 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/cif-tools.debug
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/share/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-11-01 14:19 ./usr/share/doc/cif-tools-dbgsym -> cif-tools
cif-tools_1.0.0-4_armhf.deb
---------------------------
new Debian package, version 2.0.
size 280700 bytes: control archive=1500 bytes.
1179 bytes, 25 lines control
1300 bytes, 21 lines md5sums
Package: cif-tools
Version: 1.0.0-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1883
Depends: libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.29), libcifpp1 (>= 1.0.1), libgcc-s1 (>= 3.5), libstdc++6 (>= 9)
Suggests: vim
Section: science
Priority: optional
Homepage: https://github.com/PDB-REDO/cif-tools
Description: Suite of tools to manipulate, validate and query mmCIF files
This package contains a suite of tools for the manipulation of mmCIF files.
.
The structure of macro molecules is nowadays recorded in mmCIF files. Until
recently however the ancient PDB file format was used by many programs but
that format has since long been deprecated.
.
This package provides two tools, pdb2cif and cif2pdb, that can convert files
from one format into the other, provided that data fits of course.
.
Other tools are cif-validate, cif-grep, cif-diff, cif-merge and mmCQL. The
latter can be used to manipulate an mmCIF file as if it were a SQL like
database using SELECT, UPDATE, INSERT and DELETE commands.
.
This package depends on libcifpp.
drwxr-xr-x root/root 0 2021-11-01 14:19 ./
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/bin/
-rwxr-xr-x root/root 235664 2021-11-01 14:19 ./usr/bin/cif-diff
-rwxr-xr-x root/root 194704 2021-11-01 14:19 ./usr/bin/cif-drop
-rwxr-xr-x root/root 276624 2021-11-01 14:19 ./usr/bin/cif-grep
-rwxr-xr-x root/root 206992 2021-11-01 14:19 ./usr/bin/cif-merge
-rwxr-xr-x root/root 178320 2021-11-01 14:19 ./usr/bin/cif-validate
-rwxr-xr-x root/root 252048 2021-11-01 14:19 ./usr/bin/cif2pdb
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-rwxr-xr-x root/root 321680 2021-11-01 14:19 ./usr/bin/pdb2cif
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/share/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/share/doc/cif-tools/
-rw-r--r-- root/root 480 2020-11-23 13:06 ./usr/share/doc/cif-tools/README.md
-rw-r--r-- root/root 620 2021-11-01 14:17 ./usr/share/doc/cif-tools/README.test
-rw-r--r-- root/root 397 2021-11-01 14:19 ./usr/share/doc/cif-tools/changelog.Debian.gz
-rw-r--r-- root/root 1739 2021-11-01 14:17 ./usr/share/doc/cif-tools/copyright
-rw-r--r-- root/root 368 2021-11-01 14:17 ./usr/share/doc/cif-tools/run-unit-test
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/share/man/
drwxr-xr-x root/root 0 2021-11-01 14:19 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2021-11-01 14:19 ./usr/share/man/man1/cif-diff.1.gz
-rw-r--r-- root/root 559 2021-11-01 14:19 ./usr/share/man/man1/cif-drop.1.gz
-rw-r--r-- root/root 846 2021-11-01 14:19 ./usr/share/man/man1/cif-grep.1.gz
-rw-r--r-- root/root 803 2021-11-01 14:19 ./usr/share/man/man1/cif-merge.1.gz
-rw-r--r-- root/root 743 2021-11-01 14:19 ./usr/share/man/man1/cif-validate.1.gz
-rw-r--r-- root/root 714 2021-11-01 14:19 ./usr/share/man/man1/cif2pdb.1.gz
-rw-r--r-- root/root 924 2021-11-01 14:19 ./usr/share/man/man1/mmCQL.1.gz
-rw-r--r-- root/root 783 2021-11-01 14:19 ./usr/share/man/man1/pdb2cif.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 100768
Build-Time: 488
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 458
Job: cif-tools_1.0.0-4
Machine Architecture: armhf
Package: cif-tools
Package-Time: 995
Source-Version: 1.0.0-4
Space: 100768
Status: successful
Version: 1.0.0-4
--------------------------------------------------------------------------------
Finished at 2021-11-04T06:58:00Z
Build needed 00:16:35, 100768k disc space