cif-tools →
1.0.0-3 →
armhf → 2020-12-03 05:23:35
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| cif-tools 1.0.0-3 (armhf) Thu, 03 Dec 2020 05:13:54 +0000 |
+==============================================================================+
Package: cif-tools
Version: 1.0.0-3
Source Version: 1.0.0-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-57027f21-5c49-455e-aa52-3a3282cc65f9' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.9 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.9 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'cif-tools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/cif-tools.git
Please use:
git clone https://salsa.debian.org/med-team/cif-tools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 115 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main cif-tools 1.0.0-3 (dsc) [2176 B]
Get:2 http://172.17.0.1/private bullseye-staging/main cif-tools 1.0.0-3 (tar) [108 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main cif-tools 1.0.0-3 (diff) [4120 B]
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I: NOTICE: Log filtering will replace 'build/cif-tools-6cKK1M/cif-tools-1.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/cif-tools-6cKK1M' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-KIQOjk/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-KIQOjk/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-KIQOjk/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KIQOjk/apt_archive ./ InRelease
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Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
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Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 44 not upgraded.
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debconf: delaying package configuration, since apt-utils is not installed
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
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Arch check ok (armhf included in any)
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| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: autoconf-archive, debhelper-compat (= 13), libboost-date-time-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libcifpp-dev, pkg-config
Filtered Build-Depends: autoconf-archive, debhelper-compat (= 13), libboost-date-time-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-system-dev, libcifpp-dev, pkg-config
dpkg-deb: building package 'sbuild-build-depends-cif-tools-dummy' in '/<<BUILDDIR>>/resolver-KIQOjk/apt_archive/sbuild-build-depends-cif-tools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-cif-tools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-KIQOjk/apt_archive ./ InRelease
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Get:3 copy:/<<BUILDDIR>>/resolver-KIQOjk/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-KIQOjk/apt_archive ./ Sources [559 B]
Get:5 copy:/<<BUILDDIR>>/resolver-KIQOjk/apt_archive ./ Packages [640 B]
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Reading package lists...
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Reading package lists...
Install cif-tools build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.71-dev libboost-date-time1.71.0
libboost-dev libboost-iostreams-dev libboost-iostreams1.71-dev
libboost-iostreams1.71.0 libboost-program-options-dev
libboost-program-options1.71-dev libboost-program-options1.71.0
libboost-regex1.71-dev libboost-regex1.71.0 libboost-serialization1.71-dev
libboost-serialization1.71.0 libboost-system-dev libboost-system1.71-dev
libboost-system1.71.0 libboost1.71-dev libcifpp-dev libcifpp1 libcroco3
libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0
libicu-dev libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config
po-debconf
Suggested packages:
gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff libboost-doc libboost1.71-doc libboost-atomic1.71-dev
libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev
libboost-contract1.71-dev libboost-coroutine1.71-dev
libboost-exception1.71-dev libboost-fiber1.71-dev
libboost-filesystem1.71-dev libboost-graph1.71-dev
libboost-graph-parallel1.71-dev libboost-locale1.71-dev libboost-log1.71-dev
libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev
libboost-numpy1.71-dev libboost-python1.71-dev libboost-random1.71-dev
libboost-stacktrace1.71-dev libboost-test1.71-dev libboost-thread1.71-dev
libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev
libboost1.71-tools-dev libmpfrc++-dev libntl-dev icu-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf autoconf-archive automake autopoint autotools-dev debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base icu-devtools intltool-debian libarchive-zip-perl
libboost-date-time-dev libboost-date-time1.71-dev libboost-date-time1.71.0
libboost-dev libboost-iostreams-dev libboost-iostreams1.71-dev
libboost-program-options-dev libboost-program-options1.71-dev
libboost-program-options1.71.0 libboost-regex1.71-dev libboost-regex1.71.0
libboost-serialization1.71-dev libboost-serialization1.71.0
libboost-system-dev libboost-system1.71-dev libboost-system1.71.0
libboost1.71-dev libcifpp-dev libcifpp1 libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu-dev libicu67
libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool
libuchardet0 libxml2 m4 man-db pkg-config po-debconf
sbuild-build-depends-cif-tools-dummy
The following packages will be upgraded:
libboost-iostreams1.71.0
1 upgraded, 55 newly installed, 0 to remove and 43 not upgraded.
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Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
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Get:56 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
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Setting up m4 (1.4.18-4) ...
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Setting up libcroco3:armhf (0.6.13-1) ...
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Setting up autoconf (2.69-11.1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Processing triggers for libc-bin (2.31-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-2+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-16+rpi1 gcc-10_10.2.0-16+rpi1 libc6-dev_2.31-3+rpi1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 linux-libc-dev_5.7.10-1+rpi1
Package versions: adduser_3.118 apt_2.1.11 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 autoconf-archive_20190106-2.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc2-1 binutils_2.35.1-2+rpi1 binutils-arm-linux-gnueabihf_2.35.1-2+rpi1 binutils-common_2.35.1-2+rpi1 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-16+rpi1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.2.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-16+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-16+rpi1 gcc-10-base_10.2.0-16+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-4 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 libacl1_2.2.53-8 libapt-pkg6.0_2.1.11 libarchive-zip-perl_1.68-1 libasan6_10.2.0-16+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-16+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1 libbinutils_2.35.1-2+rpi1 libblkid1_2.36-3 libboost-date-time-dev_1.71.0.3+b8 libboost-date-time1.71-dev_1.71.0-7+b1 libboost-date-time1.71.0_1.71.0-7+b1 libboost-dev_1.71.0.3+b8 libboost-iostreams-dev_1.71.0.3+b8 libboost-iostreams1.71-dev_1.71.0-7+b1 libboost-iostreams1.71.0_1.71.0-7+b1 libboost-program-options-dev_1.71.0.3+b8 libboost-program-options1.71-dev_1.71.0-7+b1 libboost-program-options1.71.0_1.71.0-7+b1 libboost-regex1.71-dev_1.71.0-7+b1 libboost-regex1.71.0_1.71.0-7+b1 libboost-serialization1.71-dev_1.71.0-7+b1 libboost-serialization1.71.0_1.71.0-7+b1 libboost-system-dev_1.71.0.3+b8 libboost-system1.71-dev_1.71.0-7+b1 libboost-system1.71.0_1.71.0-7+b1 libboost1.71-dev_1.71.0-7+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-4+rpi1 libc-dev-bin_2.31-3+rpi1 libc6_2.31-3+rpi1 libc6-dev_2.31-3+rpi1 libcap-ng0_0.7.9-2.2 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-16+rpi1 libcifpp-dev_1.0.0-3 libcifpp1_1.0.0-3 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-2+rpi1 libctf0_2.35.1-2+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1 libfdisk1_2.36-3 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-16+rpi1 libgcc-s1_10.2.0-16+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-16+rpi1 libgpg-error0_1.38-2 libhogweed6_3.6-2 libicu-dev_67.1-4 libicu67_67.1-4 libidn2-0_2.3.0-3 libisl22_0.22.1-1 libksba8_1.4.0-2 libldap-2.4-2_2.4.56+dfsg-1 libldap-common_2.4.56+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20200918-1 libnettle8_3.6-2 libnpth0_1.6-3 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libreadline8_8.1~rc2-2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libstdc++-10-dev_10.2.0-16+rpi1 libstdc++6_10.2.0-16+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-2+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtool_2.4.6-14 libubsan1_10.2.0-16+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-2+rpi1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.7.10-1+rpi1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc2-2 sbuild-build-depends-cif-tools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020d-1 util-linux_2.36-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.MlFuE9KP/trustedkeys.kbx': General error
gpgv: Signature made Tue Dec 1 07:55:15 2020 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./cif-tools_1.0.0-3.dsc
dpkg-source: info: extracting cif-tools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking cif-tools_1.0.0.orig.tar.gz
dpkg-source: info: unpacking cif-tools_1.0.0-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying makefile
dpkg-source: info: applying spelling-errors
dpkg-source: info: applying configure-patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-57027f21-5c49-455e-aa52-3a3282cc65f9
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package cif-tools
dpkg-buildpackage: info: source version 1.0.0-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config/m4': No such file or directory
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --disable-resources --disable-revision
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-resources --disable-revision
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking whether g++ supports C++17 features with -std=c++17... yes
checking whether C++ compiler accepts -fstandalone-debug... no
checking for a BSD-compatible install... /usr/bin/install -c
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for a sed that does not truncate output... /bin/sed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc is Clang... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking whether more special flags are required for pthreads... no
checking for PTHREAD_PRIO_INHERIT... yes
checking for mrc... no
configure: WARNING: The mrc application was not found, not using resources.
checking how to run the C++ preprocessor... g++ -std=c++17 -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking filesystem usability... yes
checking filesystem presence... yes
checking for filesystem... yes
checking for boostlib >= 1.65.1 (106501)... yes
checking whether the Boost::IOStreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking whether the Boost::Program_Options library is available... yes
checking for exit in -lboost_program_options... yes
checking whether the Boost::Date_Time library is available... yes
checking for exit in -lboost_date_time... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for pkg-config... /usr/bin/pkg-config
checking for libcifpp ... yes
configure: creating ./config.status
config.status: creating GNUmakefile
config.status: creating src/config.hpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p obj
>> src/pdb2cif.cpp
>> src/cif2pdb.cpp
>> src/cif-diff.cpp
>> src/cif-drop.cpp
>> src/cif-grep.cpp
>> src/cif-merge.cpp
>> src/cif-validate.cpp
>> src/mmCQL.cpp
>> src/pr-main.cpp
-> pdb2cif
-> cif2pdb
-> cif-diff
-> cif-drop
-> cif-grep
-> cif-merge
-> cif-validate
-> mmCQL
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 test VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cif-diff.o cif-drop.o cif-grep.o cif-merge.o cif-validate.o cif2pdb.o mmCQL.o pdb2cif.o pr-main.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/cif-tools AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
install -d /<<PKGBUILDDIR>>/debian/cif-tools/usr/bin
for p in pdb2cif cif2pdb cif-diff cif-drop cif-grep cif-merge cif-validate mmCQL; do install $p /<<PKGBUILDDIR>>/debian/cif-tools/usr/bin/$p; done
install -d /<<PKGBUILDDIR>>/debian/cif-tools/usr/share/man/man1
for p in pdb2cif cif2pdb cif-diff cif-drop cif-grep cif-merge cif-validate mmCQL; do \
install -m 644 doc/${p}.1 /<<PKGBUILDDIR>>/debian/cif-tools/usr/share/man/man1/${p}.1; \
gzip /<<PKGBUILDDIR>>/debian/cif-tools/usr/share/man/man1/${p}.1; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-drop contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif2pdb contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-merge contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/mmCQL contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/pdb2cif contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-validate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cif-tools/usr/bin/cif-grep contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cif-tools/usr/bin/cif-drop debian/cif-tools/usr/bin/cif-diff debian/cif-tools/usr/bin/cif2pdb debian/cif-tools/usr/bin/cif-merge debian/cif-tools/usr/bin/mmCQL debian/cif-tools/usr/bin/pdb2cif debian/cif-tools/usr/bin/cif-validate debian/cif-tools/usr/bin/cif-grep were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'cif-tools' in '../cif-tools_1.0.0-3_armhf.deb'.
dpkg-deb: building package 'cif-tools-dbgsym' in '../cif-tools-dbgsym_1.0.0-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../cif-tools_1.0.0-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-03T05:23:31Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
cif-tools_1.0.0-3_armhf.changes:
--------------------------------
Format: 1.8
Date: Mon, 30 Nov 2020 17:34:22 +0100
Source: cif-tools
Binary: cif-tools cif-tools-dbgsym
Architecture: armhf
Version: 1.0.0-3
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Maarten L. Hekkelman <maarten@hekkelman.com>
Description:
cif-tools - Suite of tools to manipulate, validate and query mmCIF files
Changes:
cif-tools (1.0.0-3) unstable; urgency=medium
.
* Fixed VCS url's in debian/control file
Checksums-Sha1:
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53ba67a2fce32d82b53ee5b5cc58099b3db08cba 5535 cif-tools_1.0.0-3_armhf.buildinfo
ea1739f103f51c6e5120c25a0594aa27869ea30e 305128 cif-tools_1.0.0-3_armhf.deb
Checksums-Sha256:
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ebe054fd1ba24d165496f0933d243e0a383752b3b2f4f521abb076ece6e25f81 5535 cif-tools_1.0.0-3_armhf.buildinfo
e44dc52b208d8828e7bf4b421f417efc1e721077445cf18438ee412013c5fb8e 305128 cif-tools_1.0.0-3_armhf.deb
Files:
fab0ac0257e3c292e8aa19adad86a3c0 8207244 debug optional cif-tools-dbgsym_1.0.0-3_armhf.deb
ce544367a08fba229012135e2ce1c733 5535 science optional cif-tools_1.0.0-3_armhf.buildinfo
e7dd703c210bd3a9d39df328446ffd65 305128 science optional cif-tools_1.0.0-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
cif-tools-dbgsym_1.0.0-3_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 8207244 bytes: control archive=956 bytes.
666 bytes, 12 lines control
937 bytes, 9 lines md5sums
Package: cif-tools-dbgsym
Source: cif-tools
Version: 1.0.0-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 9094
Depends: cif-tools (= 1.0.0-3)
Section: debug
Priority: optional
Description: debug symbols for cif-tools
Build-Ids: 10087a72b6df5bf1dde44d0d5a1144b5f83b14f3 2087e2532c7d6fe6bc0a8e5475097d25f4ca4c05 26fa1c723c3e1a9754f8d4eadf57849b1d31eb28 2b21d586759863db0410a7574eda33a437fbd36d 5d8cfb6b07e30bd7327ade255a9fb71fb3fd19c6 69398924720f8c40b09c5a388052c88f7cc95f49 af2b0c51f137219d22aa75e7f4d1f4e9b969524b de642c4a5b1ac44c9068253581b0653d1eecef75
drwxr-xr-x root/root 0 2020-11-30 16:34 ./
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root 1096876 2020-11-30 16:34 ./usr/lib/debug/.build-id/10/087a72b6df5bf1dde44d0d5a1144b5f83b14f3.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/20/
-rw-r--r-- root/root 1326224 2020-11-30 16:34 ./usr/lib/debug/.build-id/20/87e2532c7d6fe6bc0a8e5475097d25f4ca4c05.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/26/
-rw-r--r-- root/root 925016 2020-11-30 16:34 ./usr/lib/debug/.build-id/26/fa1c723c3e1a9754f8d4eadf57849b1d31eb28.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/2b/
-rw-r--r-- root/root 1015920 2020-11-30 16:34 ./usr/lib/debug/.build-id/2b/21d586759863db0410a7574eda33a437fbd36d.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/5d/
-rw-r--r-- root/root 1417452 2020-11-30 16:34 ./usr/lib/debug/.build-id/5d/8cfb6b07e30bd7327ade255a9fb71fb3fd19c6.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/69/
-rw-r--r-- root/root 801220 2020-11-30 16:34 ./usr/lib/debug/.build-id/69/398924720f8c40b09c5a388052c88f7cc95f49.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/af/
-rw-r--r-- root/root 1093292 2020-11-30 16:34 ./usr/lib/debug/.build-id/af/2b0c51f137219d22aa75e7f4d1f4e9b969524b.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.build-id/de/
-rw-r--r-- root/root 1054496 2020-11-30 16:34 ./usr/lib/debug/.build-id/de/642c4a5b1ac44c9068253581b0653d1eecef75.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 556896 2020-11-30 16:34 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/cif-tools.debug
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/share/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-11-30 16:34 ./usr/share/doc/cif-tools-dbgsym -> cif-tools
cif-tools_1.0.0-3_armhf.deb
---------------------------
new Debian package, version 2.0.
size 305128 bytes: control archive=1496 bytes.
1155 bytes, 25 lines control
1300 bytes, 21 lines md5sums
Package: cif-tools
Version: 1.0.0-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2051
Depends: libboost-iostreams1.71.0, libboost-program-options1.71.0, libc6 (>= 2.29), libcifpp1 (>= 1.0.0), libgcc-s1 (>= 3.5), libstdc++6 (>= 9)
Suggests: vim
Section: science
Priority: optional
Homepage: https://github.com/PDB-REDO/cif-tools
Description: Suite of tools to manipulate, validate and query mmCIF files
This package contains a suite of tools for the manipulation of mmCIF files.
.
The structure of macro molecules is nowadays recorded in mmCIF files. Until
recently however the ancient PDB file format was used by many programs but
that format has since long been deprecated.
.
This package provides two tools, pdb2cif and cif2pdb, that can convert files
from one format into the other, provided that data fits of course.
.
Other tools are cif-validate, cif-grep, cif-diff, cif-merge and mmCQL. The
latter can be used to manipulate an mmCIF file as if it were a SQL like
database using SELECT, UPDATE, INSERT and DELETE commands.
.
This package depends on libcifpp.
drwxr-xr-x root/root 0 2020-11-30 16:34 ./
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/bin/
-rwxr-xr-x root/root 256144 2020-11-30 16:34 ./usr/bin/cif-diff
-rwxr-xr-x root/root 219280 2020-11-30 16:34 ./usr/bin/cif-drop
-rwxr-xr-x root/root 301200 2020-11-30 16:34 ./usr/bin/cif-grep
-rwxr-xr-x root/root 227472 2020-11-30 16:34 ./usr/bin/cif-merge
-rwxr-xr-x root/root 198800 2020-11-30 16:34 ./usr/bin/cif-validate
-rwxr-xr-x root/root 272528 2020-11-30 16:34 ./usr/bin/cif2pdb
-rwxr-xr-x root/root 243856 2020-11-30 16:34 ./usr/bin/mmCQL
-rwxr-xr-x root/root 350352 2020-11-30 16:34 ./usr/bin/pdb2cif
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/share/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/share/doc/cif-tools/
-rw-r--r-- root/root 480 2020-11-23 13:06 ./usr/share/doc/cif-tools/README.md
-rw-r--r-- root/root 620 2020-11-30 16:34 ./usr/share/doc/cif-tools/README.test
-rw-r--r-- root/root 277 2020-11-30 16:34 ./usr/share/doc/cif-tools/changelog.Debian.gz
-rw-r--r-- root/root 1739 2020-11-30 16:34 ./usr/share/doc/cif-tools/copyright
-rw-r--r-- root/root 368 2020-11-30 16:34 ./usr/share/doc/cif-tools/run-unit-test
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/share/man/
drwxr-xr-x root/root 0 2020-11-30 16:34 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2020-11-30 16:34 ./usr/share/man/man1/cif-diff.1.gz
-rw-r--r-- root/root 559 2020-11-30 16:34 ./usr/share/man/man1/cif-drop.1.gz
-rw-r--r-- root/root 846 2020-11-30 16:34 ./usr/share/man/man1/cif-grep.1.gz
-rw-r--r-- root/root 803 2020-11-30 16:34 ./usr/share/man/man1/cif-merge.1.gz
-rw-r--r-- root/root 743 2020-11-30 16:34 ./usr/share/man/man1/cif-validate.1.gz
-rw-r--r-- root/root 714 2020-11-30 16:34 ./usr/share/man/man1/cif2pdb.1.gz
-rw-r--r-- root/root 924 2020-11-30 16:34 ./usr/share/man/man1/mmCQL.1.gz
-rw-r--r-- root/root 783 2020-11-30 16:34 ./usr/share/man/man1/pdb2cif.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 102044
Build-Time: 244
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 316
Job: cif-tools_1.0.0-3
Machine Architecture: armhf
Package: cif-tools
Package-Time: 577
Source-Version: 1.0.0-3
Space: 102044
Status: successful
Version: 1.0.0-3
--------------------------------------------------------------------------------
Finished at 2020-12-03T05:23:31Z
Build needed 00:09:37, 102044k disk space