cd-hit →
4.6.5-1 →
armhf → 2016-03-15 05:03:41
sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on bm-wb-01
+==============================================================================+
| cd-hit 4.6.5-1 (armhf) 15 Mar 2016 04:58 |
+==============================================================================+
Package: cd-hit
Version: 4.6.5-1
Source Version: 4.6.5-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/cd-hit-tLCzrf/cd-hit-4.6.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/cd-hit-tLCzrf' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-9f69491e-b322-4987-b321-fa4d568c51c4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8804 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
Fetched 19.7 MB in 22s (892 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'cd-hit' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/cd-hit/trunk/
Need to get 1155 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main cd-hit 4.6.5-1 (dsc) [1966 B]
Get:2 http://172.17.0.1/private stretch-staging/main cd-hit 4.6.5-1 (tar) [1149 kB]
Get:3 http://172.17.0.1/private stretch-staging/main cd-hit 4.6.5-1 (diff) [4780 B]
Fetched 1155 kB in 0s (7823 kB/s)
Download complete and in download only mode
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-SQeY31/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Packages [525 B]
Ign:4 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ Packages [525 B]
Reading package lists...
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
manpages
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 72 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-SQeY31/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), help2man
Filtered Build-Depends: debhelper (>= 9), help2man
dpkg-deb: building package 'sbuild-build-depends-cd-hit-dummy' in '/<<BUILDDIR>>/resolver-v5VQiB/apt_archive/sbuild-build-depends-cd-hit-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Sources [213 B]
Get:5 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Packages [530 B]
Ign:4 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Sources
Ign:5 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Packages
Get:4 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Sources [213 B]
Get:5 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ Packages [530 B]
Reading package lists...
Reading package lists...
Install cd-hit build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
manpages
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libcroco3 libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu55
liblocale-gettext-perl libmagic1 libpipeline1 libtimedate-perl libunistring0
libxml2 man-db po-debconf
Suggested packages:
wamerican | wordlist whois vacation dh-make gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libcroco3 libffi6 libfile-stripnondeterminism-perl libglib2.0-0 libicu55
liblocale-gettext-perl libmagic1 libpipeline1 libtimedate-perl libunistring0
libxml2 man-db po-debconf sbuild-build-depends-cd-hit-dummy
0 upgraded, 25 newly installed, 0 to remove and 72 not upgraded.
Need to get 16.6 MB/16.6 MB of archives.
After this operation, 58.2 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-v5VQiB/apt_archive ./ sbuild-build-depends-cd-hit-dummy 0.invalid.0 [774 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf liblocale-gettext-perl armhf 1.07-1+b1 [18.0 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:24 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160306 [815 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.3 [154 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 16.6 MB in 1s (9874 kB/s)
Selecting previously unselected package liblocale-gettext-perl.
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Preparing to unpack .../libglib2.0-0_2.46.2-3_armhf.deb ...
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Preparing to unpack .../libcroco3_0.6.11-1_armhf.deb ...
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Preparing to unpack .../gettext_0.19.7-2_armhf.deb ...
Unpacking gettext (0.19.7-2) ...
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Unpacking debhelper (9.20160306) ...
Selecting previously unselected package help2man.
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Selecting previously unselected package sbuild-build-depends-cd-hit-dummy.
Preparing to unpack .../sbuild-build-depends-cd-hit-dummy.deb ...
Unpacking sbuild-build-depends-cd-hit-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-7) ...
Setting up liblocale-gettext-perl (1.07-1+b1) ...
Setting up groff-base (1.22.3-7) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up autotools-dev (20150820.1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.016-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up help2man (1.47.3) ...
Setting up debhelper (9.20160306) ...
Setting up sbuild-build-depends-cd-hit-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Processing triggers for libc-bin (2.21-7) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-3 dpkg-dev_1.18.4 g++-5_5.3.1-8+rpi1 gcc-5_5.3.1-8+rpi1 libc6-dev_2.21-7 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.2.3 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-3 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-8+rpi1 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160306 debianutils_4.7 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-2 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-8+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-8+rpi1 gcc-5-base_5.3.1-8+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 help2man_1.47.3 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.2 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-3 libapparmor1_2.10-3 libapt-pkg5.0_1.2.3 libarchive-zip-perl_1.56-2 libasan2_5.3.1-8+rpi1 libatomic1_5.3.1-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-3 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-8+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.204 libdevmapper1.02.1_2:1.02.115-2 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-8+rpi1 libgcc1_1:5.3.1-8+rpi1 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-8+rpi1 libgpg-error0_1.21-1 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-7+rpi1 libkmod2_22-1 liblocale-gettext-perl_1.07-1+b1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-3 libss2_1.42.13-1 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 libsystemd0_228-6 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-8+rpi1 libudev1_228-6 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-1 mawk_1.3.3-17 mount_2.27.1-3 multiarch-support_2.21-7 nano_2.5.1-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-7 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-cd-hit-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-6 systemd-sysv_228-6 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-6 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Wed Mar 9 20:53:57 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./cd-hit_4.6.5-1.dsc
dpkg-source: info: extracting cd-hit in cd-hit-4.6.5
dpkg-source: info: unpacking cd-hit_4.6.5.orig.tar.gz
dpkg-source: info: unpacking cd-hit_4.6.5-1.debian.tar.xz
dpkg-source: info: applying enable_help2man.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-9f69491e-b322-4987-b321-fa4d568c51c4
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package cd-hit
dpkg-buildpackage: source version 4.6.5-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build cd-hit-4.6.5
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
make -j1 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f *.o cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules build-arch
dh build-arch
dh_testdir -a
dh_update_autotools_config -a
dh_auto_configure -a
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build -- openmp=yes
make -j1 openmp=yes
make[2]: Entering directory '/<<PKGBUILDDIR>>'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-common.c++ -c
cdhit-common.c++:313:16: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
strcpy( date, __DATE__ );
^
cdhit-common.c++:317:66: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
printf( "Program: CD-HIT, V" CDHIT_VERSION WITH_OPENMP ", %s, " __TIME__ "\n", date );
^
cdhit-common.c++: In member function 'void SequenceDB::DoClustering(const Options&)':
cdhit-common.c++:3043:66: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'size_t {aka unsigned int}' [-Wformat=]
printf( "\nApprixmated maximum memory consumption: %liM\n", mem );
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-utility.c++ -c
cdhit-utility.c++:9:79: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
char cd_hit_ver[] = "\t\t====== CD-HIT version " CDHIT_VERSION " (built on " __DATE__ ") ======";
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit.c++ -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -o cd-hit
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-est.c++ -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-est.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -o cd-hit-est
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-2d.c++ -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -o cd-hit-2d
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-est-2d.c++ -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-est-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -o cd-hit-est-2d
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-div.c++ -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-div.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -o cd-hit-div
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-454.c++ -c
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security cdhit-454.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -o cd-hit-454
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
dh_installdirs -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- PREFIX=debian/cd-hit/usr/lib/cd-hit
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/cd-hit AM_UPDATE_INFO_DIR=no PREFIX=debian/cd-hit/usr/lib/cd-hit
make[2]: Entering directory '/<<PKGBUILDDIR>>'
for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \
install -m 0755 $prog debian/cd-hit/usr/lib/cd-hit; \
done
install -m 0755 *.pl debian/cd-hit/usr/lib/cd-hit;
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1/
help2man --no-info --no-discard-stderr --version-string='4.6.5' \
--name='quickly group sequences' \
/<<PKGBUILDDIR>>/cd-hit | \
sed -e 's/^cd-\(hit \\-\)/cd\1/' -e 's/^.B cd-hit/.B cdhit/' \
> /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//cdhit.1
help2man --no-info --no-discard-stderr --version-string='4.6.5' \
--name='quickly group sequences, optimised for 454 data' \
/<<PKGBUILDDIR>>/cd-hit-454 | \
sed -e 's/^cd-\(hit \\-\)/cd\1/' -e 's/^.B cd-hit/.B cdhit/' \
> /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//cdhit-454.1
help2man --no-info --no-discard-stderr --version-string='4.6.5' \
--name='quickly group sequences in db1 or db2 format' \
/<<PKGBUILDDIR>>/cd-hit-2d | \
sed -e 's/^cd-\(hit-2d \\-\)/cd\1/' -e 's/^.B cd-hit/.B cdhit/' \
> /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//cdhit-2d.1
help2man --no-info --no-discard-stderr --version-string='4.6.5' \
--name='run CD-HIT algorithm on RNA/DNA sequences' \
/<<PKGBUILDDIR>>/cd-hit-est | \
sed -e 's/^cd-\(hit-est \\-\)/cd\1/' -e 's/^.B cd-hit/.B cdhit/' \
> /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//cdhit-est.1
help2man --no-info --no-discard-stderr --version-string='4.6.5' \
--name='run CD-HIT algorithm on RNA/DNA sequences in db1 or db2 format' \
/<<PKGBUILDDIR>>/cd-hit-est-2d | \
sed -e 's/^cd-\(hit-est-2d \\-\)/cd\1/' -e 's/^.B cd-hit/.B cdhit/' \
> /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//cdhit-est-2d.1
help2man --no-info --no-discard-stderr --version-string='4.6.5' \
--name='divide a big clustering job into pieces to run cd-hit-2d or cd-hit-est-2d jobs' \
/<<PKGBUILDDIR>>/cd-hit-2d-para.pl > /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//cd-hit-2d-para.1
help2man --no-info --no-discard-stderr --version-string='4.6.5' \
--name='divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs' \
/<<PKGBUILDDIR>>/cd-hit-para.pl > /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//cd-hit-para.1
# psi-cd-hit.pl is throwing some errors which are fixed using sed
# ... at least in versions <= 4.6.4 - now help2man does not work at all
#help2man --no-info --no-discard-stderr --version-string='4.6.5' \
# --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities' \
# /<<PKGBUILDDIR>>/psi-cd-hit.pl | \
# sed -e '/^Name "main::.*" used only once:/d' \
# > /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//psi-cd-hit.1
# help2man does not work at all since version 4.6.4
#help2man --no-info --no-discard-stderr --version-string='4.6.5' \
# --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \
# /<<PKGBUILDDIR>>/psi-cd-hit-2d.pl > /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d.1
# FIXME: what is the difference between psi-cd-hit-2d.pl and psi-cd-hit-2d-g1.pl ?
# help2man does not work at all since version 4.6.4
#help2man --no-info --no-discard-stderr --version-string='4.6.5' \
# --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \
# /<<PKGBUILDDIR>>/psi-cd-hit-2d-g1.pl > /<<PKGBUILDDIR>>/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d-g1.1
# No help output from
# cd-hit-div.pl
# clstr2tree.pl
# clstr_merge.pl
# clstr_merge_noorder.pl
# clstr_reduce.pl
# clstr_renumber.pl
# clstr_rev.pl
# clstr_sort_by.pl
# clstr_sort_prot_by
# make_multi_seq
# psi-cd-hit-local.pl -> even throws several "used only once: possible typo" errors
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/cd-hit/usr/lib/cd-hit/cd-hit-2d contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cd-hit/usr/lib/cd-hit/cd-hit contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cd-hit/usr/lib/cd-hit/cd-hit-est contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cd-hit/usr/lib/cd-hit/cd-hit-est-2d contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cd-hit/usr/lib/cd-hit/cd-hit-454 contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/cd-hit/usr/lib/cd-hit/cd-hit-div contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cd-hit/usr/lib/cd-hit/cd-hit-2d debian/cd-hit/usr/lib/cd-hit/cd-hit debian/cd-hit/usr/lib/cd-hit/cd-hit-est debian/cd-hit/usr/lib/cd-hit/cd-hit-est-2d debian/cd-hit/usr/lib/cd-hit/cd-hit-454 debian/cd-hit/usr/lib/cd-hit/cd-hit-div were not linked against libpthread.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/cd-hit/usr/lib/cd-hit/cd-hit-2d debian/cd-hit/usr/lib/cd-hit/cd-hit debian/cd-hit/usr/lib/cd-hit/cd-hit-est debian/cd-hit/usr/lib/cd-hit/cd-hit-est-2d debian/cd-hit/usr/lib/cd-hit/cd-hit-454 debian/cd-hit/usr/lib/cd-hit/cd-hit-div were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'cd-hit-dbgsym' in '../cd-hit-dbgsym_4.6.5-1_armhf.deb'.
dpkg-deb: building package 'cd-hit' in '../cd-hit_4.6.5-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../cd-hit_4.6.5-1_armhf.changes
dpkg-genchanges: warning: package cd-hit-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build cd-hit-4.6.5
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160315-0503
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
cd-hit_4.6.5-1_armhf.changes:
-----------------------------
Format: 1.8
Date: Wed, 09 Mar 2016 21:47:21 +0100
Source: cd-hit
Binary: cd-hit
Architecture: armhf
Version: 4.6.5-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
cd-hit - suite of programs designed to quickly group sequences
Changes:
cd-hit (4.6.5-1) unstable; urgency=medium
.
* New upstream version
* cme fix dpkg-control
Checksums-Sha1:
da6e50cec2018cf737b5dc08e40f0527319f674c 1636530 cd-hit-dbgsym_4.6.5-1_armhf.deb
4096d4ff798d0f6743a561951a860298ddee5a8f 827598 cd-hit_4.6.5-1_armhf.deb
Checksums-Sha256:
c478813de42a12ae0e97855e7cc0592de6d276733d053216deea3c126e4e1795 1636530 cd-hit-dbgsym_4.6.5-1_armhf.deb
a91d30dccc9c815bd629a5c1f5c90662c3a8d031df390d6eb0e5bf2bb45761d4 827598 cd-hit_4.6.5-1_armhf.deb
Files:
17b42246d60192d3482d302fc246358b 1636530 debug extra cd-hit-dbgsym_4.6.5-1_armhf.deb
8065619419a264b2759b22df9f54aab3 827598 science optional cd-hit_4.6.5-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
cd-hit-dbgsym_4.6.5-1_armhf.deb
-------------------------------
new debian package, version 2.0.
size 1636530 bytes: control archive=774 bytes.
616 bytes, 13 lines control
636 bytes, 6 lines md5sums
Package: cd-hit-dbgsym
Source: cd-hit
Version: 4.6.5-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1797
Depends: cd-hit (= 4.6.5-1)
Section: debug
Priority: extra
Homepage: http://weizhong-lab.ucsd.edu/cd-hit/
Description: Debug symbols for cd-hit
Auto-Built-Package: debug-symbols
Build-Ids: 0e322e3b7674f783ded66bf063292ad4b2840c94 4e4d3dce3ac557a011b2ec712e8d08942e61d484 8394fd55f46b2fa969a74e6950df4bc55d74fc8e ba1ab7a5dbc2bb6368960806f3fa2474a757fc32 cc686e81d22e4111106864dbe172216f2e2f1318 ff31eb7d4501eeaefd19f9c48d9c64b65124131f
drwxr-xr-x root/root 0 2016-03-15 05:03 ./
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/debug/.build-id/0e/
-rw-r--r-- root/root 301984 2016-03-15 05:03 ./usr/lib/debug/.build-id/0e/322e3b7674f783ded66bf063292ad4b2840c94.debug
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/debug/.build-id/4e/
-rw-r--r-- root/root 306692 2016-03-15 05:03 ./usr/lib/debug/.build-id/4e/4d3dce3ac557a011b2ec712e8d08942e61d484.debug
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/debug/.build-id/83/
-rw-r--r-- root/root 301644 2016-03-15 05:03 ./usr/lib/debug/.build-id/83/94fd55f46b2fa969a74e6950df4bc55d74fc8e.debug
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/debug/.build-id/ba/
-rw-r--r-- root/root 307228 2016-03-15 05:03 ./usr/lib/debug/.build-id/ba/1ab7a5dbc2bb6368960806f3fa2474a757fc32.debug
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/debug/.build-id/cc/
-rw-r--r-- root/root 302168 2016-03-15 05:03 ./usr/lib/debug/.build-id/cc/686e81d22e4111106864dbe172216f2e2f1318.debug
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/debug/.build-id/ff/
-rw-r--r-- root/root 301968 2016-03-15 05:03 ./usr/lib/debug/.build-id/ff/31eb7d4501eeaefd19f9c48d9c64b65124131f.debug
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/share/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/share/doc/cd-hit-dbgsym -> cd-hit
cd-hit_4.6.5-1_armhf.deb
------------------------
new debian package, version 2.0.
size 827598 bytes: control archive=1962 bytes.
894 bytes, 17 lines control
3046 bytes, 46 lines md5sums
Package: cd-hit
Version: 4.6.5-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1621
Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), perl
Section: science
Priority: optional
Homepage: http://weizhong-lab.ucsd.edu/cd-hit/
Description: suite of programs designed to quickly group sequences
cd-hit contains a number of programs designed to quickly group
sequences. cd-hit groups proteins into clusters that meet a user-defined
similarity threshold. cd-hit-est is similar to cd-hit, but designed to
group nucleotide sequences (without introns). cd-hit-est-2d is similar
to cd-hit-2d but designed to compare two nucleotide datasets. A number
of other related programs are also in this package. Please see the
cd-hit user manual, also part of this package, for further information.
drwxr-xr-x root/root 0 2016-03-15 05:03 ./
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/bin/
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/cd-hit-2d-para -> ../lib/cd-hit/cd-hit-2d-para.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/cd-hit-div -> ../lib/cd-hit/cd-hit-div.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/cd-hit-para -> ../lib/cd-hit/cd-hit-para.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/cdhit -> ../lib/cd-hit/cd-hit
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/cdhit-2d -> ../lib/cd-hit/cd-hit-2d
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/cdhit-454 -> ../lib/cd-hit/cd-hit-454
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/cdhit-est -> ../lib/cd-hit/cd-hit-est
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/cdhit-est-2d -> ../lib/cd-hit/cd-hit-est-2d
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/clstr2tree -> ../lib/cd-hit/clstr2tree.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/clstr_merge -> ../lib/cd-hit/clstr_merge.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/clstr_merge_noorder -> ../lib/cd-hit/clstr_merge_noorder.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/clstr_reduce -> ../lib/cd-hit/clstr_reduce.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/clstr_renumber -> ../lib/cd-hit/clstr_renumber.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/clstr_rev -> ../lib/cd-hit/clstr_rev.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/clstr_sort_by -> ../lib/cd-hit/clstr_sort_by.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/clstr_sort_prot_by -> ../lib/cd-hit/clstr_sort_prot_by.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/make_multi_seq -> ../lib/cd-hit/make_multi_seq.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/psi-cd-hit -> ../lib/cd-hit/psi-cd-hit.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/psi-cd-hit-2d -> ../lib/cd-hit/psi-cd-hit-2d.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/psi-cd-hit-2d-g1 -> ../lib/cd-hit/psi-cd-hit-2d-g1.pl
lrwxrwxrwx root/root 0 2016-03-15 05:03 ./usr/bin/psi-cd-hit-local -> ../lib/cd-hit/psi-cd-hit-local.pl
drwxr-xr-x root/root 0 2016-03-15 05:02 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/lib/cd-hit/
-rwxr-xr-x root/root 103880 2016-03-15 05:03 ./usr/lib/cd-hit/cd-hit
-rwxr-xr-x root/root 103880 2016-03-15 05:03 ./usr/lib/cd-hit/cd-hit-2d
-rwxr-xr-x root/root 12596 2016-03-15 05:02 ./usr/lib/cd-hit/cd-hit-2d-para.pl
-rwxr-xr-x root/root 103964 2016-03-15 05:03 ./usr/lib/cd-hit/cd-hit-454
-rwxr-xr-x root/root 103876 2016-03-15 05:03 ./usr/lib/cd-hit/cd-hit-div
-rwxr-xr-x root/root 877 2016-03-15 05:02 ./usr/lib/cd-hit/cd-hit-div.pl
-rwxr-xr-x root/root 103880 2016-03-15 05:03 ./usr/lib/cd-hit/cd-hit-est
-rwxr-xr-x root/root 103880 2016-03-15 05:03 ./usr/lib/cd-hit/cd-hit-est-2d
-rwxr-xr-x root/root 11859 2016-03-15 05:02 ./usr/lib/cd-hit/cd-hit-para.pl
-rwxr-xr-x root/root 952 2016-03-15 05:02 ./usr/lib/cd-hit/clstr2tree.pl
-rwxr-xr-x root/root 1209 2016-03-15 05:02 ./usr/lib/cd-hit/clstr2txt.pl
-rwxr-xr-x root/root 4503 2016-03-15 05:02 ./usr/lib/cd-hit/clstr2xml.pl
-rwxr-xr-x root/root 464 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_cut.pl
-rwxr-xr-x root/root 3199 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_merge.pl
-rwxr-xr-x root/root 2162 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_merge_noorder.pl
-rwxr-xr-x root/root 3465 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_quality_eval.pl
-rwxr-xr-x root/root 2335 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_quality_eval_by_link.pl
-rwxr-xr-x root/root 1000 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_reduce.pl
-rwxr-xr-x root/root 196 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_renumber.pl
-rwxr-xr-x root/root 554 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_rep.pl
-rwxr-xr-x root/root 1160 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_reps_faa_rev.pl
-rwxr-xr-x root/root 1620 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_rev.pl
-rwxr-xr-x root/root 387 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_select.pl
-rwxr-xr-x root/root 555 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_select_rep.pl
-rwxr-xr-x root/root 779 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_size_histogram.pl
-rwxr-xr-x root/root 725 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_size_stat.pl
-rwxr-xr-x root/root 806 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_sort_by.pl
-rwxr-xr-x root/root 1291 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_sort_prot_by.pl
-rwxr-xr-x root/root 2928 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_sql_tbl.pl
-rwxr-xr-x root/root 1103 2016-03-15 05:02 ./usr/lib/cd-hit/clstr_sql_tbl_sort.pl
-rwxr-xr-x root/root 1670 2016-03-15 05:02 ./usr/lib/cd-hit/make_multi_seq.pl
-rwxr-xr-x root/root 3668 2016-03-15 05:02 ./usr/lib/cd-hit/plot_2d.pl
-rwxr-xr-x root/root 2190 2016-03-15 05:02 ./usr/lib/cd-hit/plot_len1.pl
drwxr-xr-x root/root 0 2016-03-15 05:02 ./usr/share/
drwxr-xr-x root/root 0 2016-03-15 05:02 ./usr/share/doc-base/
-rw-r--r-- root/root 753 2013-09-12 08:58 ./usr/share/doc-base/cd-hit
drwxr-xr-x root/root 0 2016-03-15 05:02 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/share/doc/cd-hit/
-rw-r--r-- root/root 303 2013-09-12 08:58 ./usr/share/doc/cd-hit/README.Debian
-rw-r--r-- root/root 898823 2016-02-12 00:58 ./usr/share/doc/cd-hit/cdhit-user-guide.pdf
-rw-r--r-- root/root 1419 2016-03-09 20:47 ./usr/share/doc/cd-hit/changelog.Debian.gz
-rw-r--r-- root/root 962 2016-02-12 00:58 ./usr/share/doc/cd-hit/changelog.gz
-rw-r--r-- root/root 1150 2016-01-22 14:29 ./usr/share/doc/cd-hit/copyright
drwxr-xr-x root/root 0 2016-03-15 05:02 ./usr/share/man/
drwxr-xr-x root/root 0 2016-03-15 05:03 ./usr/share/man/man1/
-rw-r--r-- root/root 1148 2016-03-15 05:03 ./usr/share/man/man1/cd-hit-2d-para.1.gz
-rw-r--r-- root/root 1111 2016-03-15 05:03 ./usr/share/man/man1/cd-hit-para.1.gz
-rw-r--r-- root/root 1690 2016-03-15 05:03 ./usr/share/man/man1/cdhit-2d.1.gz
-rw-r--r-- root/root 1354 2016-03-15 05:02 ./usr/share/man/man1/cdhit-454.1.gz
-rw-r--r-- root/root 1920 2016-03-15 05:03 ./usr/share/man/man1/cdhit-est-2d.1.gz
-rw-r--r-- root/root 1818 2016-03-15 05:03 ./usr/share/man/man1/cdhit-est.1.gz
-rw-r--r-- root/root 1658 2016-03-15 05:02 ./usr/share/man/man1/cdhit.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 15812
Build-Time: 143
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 147
Job: cd-hit_4.6.5-1
Machine Architecture: armhf
Package: cd-hit
Package-Time: 332
Source-Version: 4.6.5-1
Space: 15812
Status: successful
Version: 4.6.5-1
--------------------------------------------------------------------------------
Finished at 20160315-0503
Build needed 00:05:32, 15812k disc space