cctools →
7.0.0-1 →
armhf → 2018-07-14 06:11:46
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| cctools 7.0.0-1 (armhf) Sat, 14 Jul 2018 05:54:54 +0000 |
+==============================================================================+
Package: cctools
Version: 7.0.0-1
Source Version: 7.0.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-f3e1a224-b2fe-4b88-a53d-6d1abec6d7ee' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.9 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
Fetched 23.5 MB in 11s (2125 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'cctools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org:/neurodebian-team/cctools.git
Please use:
git clone https://salsa.debian.org:/neurodebian-team/cctools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 9845 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main cctools 7.0.0-1 (dsc) [2469 B]
Get:2 http://172.17.0.1/private buster-staging/main cctools 7.0.0-1 (tar) [9830 kB]
Get:3 http://172.17.0.1/private buster-staging/main cctools 7.0.0-1 (diff) [12.3 kB]
Fetched 9845 kB in 9s (1063 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/cctools-VqbZZ1/cctools-7.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/cctools-VqbZZ1' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-fJpm2C/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-fJpm2C/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-fJpm2C/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (11.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 39 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15728 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), python-all-dev (>= 2.6.6-3~), python3-all-dev, libglobus-common-dev, default-libmysqlclient-dev, libfuse-dev, libperl-dev, libkrb5-dev, libsqlite3-dev, pkg-config, libglobus-gss-assist-dev, net-tools, doxygen, libreadline6-dev | libreadline-dev, libncurses5-dev | libncurses-dev, swig, m4, mpi-default-dev
Filtered Build-Depends: debhelper (>= 10), python-all-dev (>= 2.6.6-3~), python3-all-dev, libglobus-common-dev, default-libmysqlclient-dev, libfuse-dev, libperl-dev, libkrb5-dev, libsqlite3-dev, pkg-config, libglobus-gss-assist-dev, net-tools, doxygen, libreadline6-dev, libncurses5-dev, swig, m4, mpi-default-dev
dpkg-deb: building package 'sbuild-build-depends-cctools-dummy' in '/<<BUILDDIR>>/resolver-fJpm2C/apt_archive/sbuild-build-depends-cctools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-cctools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ Sources [631 B]
Get:5 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ Packages [700 B]
Fetched 2664 B in 0s (14.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install cctools build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils comerr-dev debhelper
default-libmysqlclient-dev dh-autoreconf dh-python dh-strip-nondeterminism
doxygen dwz file gettext gettext-base groff-base ibverbs-providers
intltool-debian krb5-multidev libarchive-zip-perl libbsd0 libclang1-6.0
libcroco3 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6
libevent-pthreads-2.1-6 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libfuse-dev libfuse2 libgfortran4 libglib2.0-0
libglobus-callout-dev libglobus-callout0 libglobus-common-dev
libglobus-common0 libglobus-gsi-callback-dev libglobus-gsi-callback0
libglobus-gsi-cert-utils-dev libglobus-gsi-cert-utils0
libglobus-gsi-credential-dev libglobus-gsi-credential1
libglobus-gsi-openssl-error-dev libglobus-gsi-openssl-error0
libglobus-gsi-proxy-core-dev libglobus-gsi-proxy-core0
libglobus-gsi-proxy-ssl-dev libglobus-gsi-proxy-ssl1
libglobus-gsi-sysconfig-dev libglobus-gsi-sysconfig1
libglobus-gss-assist-dev libglobus-gss-assist3 libglobus-gssapi-gsi-dev
libglobus-gssapi-gsi4 libglobus-openssl-module-dev libglobus-openssl-module0
libgraphite2-3 libgssapi-krb5-2 libgssrpc4 libharfbuzz0b libhwloc-dev
libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-le-hb0 libicu60
libk5crypto3 libkadm5clnt-mit11 libkadm5srv-mit11 libkdb5-9 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 libllvm6.0 libltdl-dev libltdl7
libmagic-mgc libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
libmariadbclient18 libmpdec2 libncurses-dev libnl-3-200 libnl-route-3-200
libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1 libpmix2
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
libreadline-dev libselinux1-dev libsepol1-dev libsigsegv2 libsqlite3-dev
libssl-dev libssl1.0.2 libtimedate-perl libtool libxapian30 libxml2 m4
man-db mime-support mpi-default-dev mysql-common net-tools
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf python python-all python-all-dev python-dev python-minimal
python2 python2-dev python2-minimal python2.7 python2.7-dev
python2.7-minimal python3 python3-all python3-all-dev python3-dev
python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-dev
python3.6-minimal swig swig3.0 zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation doc-base dh-make doxygen-latex doxygen-doc doxygen-gui graphviz
gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc fuse krb5-user
libhwloc-contrib-plugins libtool-doc ncurses-doc openmpi-doc pciutils
readline-doc sqlite3-doc libssl-doc gfortran | fortran95-compiler gcj-jdk
xapian-tools m4-doc apparmor less www-browser opencl-icd gfortran keychain
libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-doc python-tk
python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3.6-venv python3.6-doc swig-doc swig-examples swig3.0-examples
swig3.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libglobus-callout-doc libglobus-common-doc
libglobus-gsi-callback-doc libglobus-gsi-cert-utils-doc
libglobus-gsi-credential-doc libglobus-gsi-openssl-error-doc
libglobus-gsi-proxy-core-doc libglobus-gsi-proxy-ssl-doc
libglobus-gsi-sysconfig-doc libglobus-gss-assist-doc
libglobus-gssapi-gsi-doc libglobus-openssl-module-doc krb5-locales xauth
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils comerr-dev debhelper
default-libmysqlclient-dev dh-autoreconf dh-python dh-strip-nondeterminism
doxygen dwz file gettext gettext-base groff-base ibverbs-providers
intltool-debian krb5-multidev libarchive-zip-perl libbsd0 libclang1-6.0
libcroco3 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6
libevent-pthreads-2.1-6 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libfuse-dev libfuse2 libgfortran4 libglib2.0-0
libglobus-callout-dev libglobus-callout0 libglobus-common-dev
libglobus-common0 libglobus-gsi-callback-dev libglobus-gsi-callback0
libglobus-gsi-cert-utils-dev libglobus-gsi-cert-utils0
libglobus-gsi-credential-dev libglobus-gsi-credential1
libglobus-gsi-openssl-error-dev libglobus-gsi-openssl-error0
libglobus-gsi-proxy-core-dev libglobus-gsi-proxy-core0
libglobus-gsi-proxy-ssl-dev libglobus-gsi-proxy-ssl1
libglobus-gsi-sysconfig-dev libglobus-gsi-sysconfig1
libglobus-gss-assist-dev libglobus-gss-assist3 libglobus-gssapi-gsi-dev
libglobus-gssapi-gsi4 libglobus-openssl-module-dev libglobus-openssl-module0
libgraphite2-3 libgssapi-krb5-2 libgssrpc4 libharfbuzz0b libhwloc-dev
libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-le-hb0 libicu60
libk5crypto3 libkadm5clnt-mit11 libkadm5srv-mit11 libkdb5-9 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 libllvm6.0 libltdl-dev libltdl7
libmagic-mgc libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
libmariadbclient18 libmpdec2 libncurses-dev libnl-3-200 libnl-route-3-200
libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1 libpmix2
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
libreadline-dev libselinux1-dev libsepol1-dev libsigsegv2 libsqlite3-dev
libssl-dev libssl1.0.2 libtimedate-perl libtool libxapian30 libxml2 m4
man-db mime-support mpi-default-dev mysql-common net-tools
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf python python-all python-all-dev python-dev python-minimal
python2 python2-dev python2-minimal python2.7 python2.7-dev
python2.7-minimal python3 python3-all python3-all-dev python3-dev
python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-dev
python3.6-minimal sbuild-build-depends-cctools-dummy swig swig3.0 zlib1g-dev
0 upgraded, 165 newly installed, 0 to remove and 39 not upgraded.
Need to get 132 MB/145 MB of archives.
After this operation, 385 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-fJpm2C/apt_archive ./ sbuild-build-depends-cctools-dummy 0.invalid.0 [988 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-1 [393 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-1 [1077 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-1 [1841 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-1 [298 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6-1 [565 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6-1 [1383 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6-1 [1638 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6-1 [234 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2o-1 [888 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf net-tools armhf 1.60+git20161116.90da8a0-2 [221 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20180525-1 [70.6 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [156 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf openssh-client armhf 1:7.7p1-3 [671 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf comerr-dev armhf 2.1-1.44.2-1 [37.7 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.2-2 [832 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.29-6+b1 [1528 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.29-6+b1 [27.6 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:59 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180326 [93.2 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libllvm6.0 armhf 1:6.0.1-2+rpi1 [12.7 MB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libclang1-6.0 armhf 1:6.0.1-2+rpi1 [5734 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libxapian30 armhf 1.4.6-2 [945 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf doxygen armhf 1.8.13-10 [3257 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 19.0-1 [42.9 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf ibverbs-providers armhf 19.0-1 [19.8 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libgssrpc4 armhf 1.16-2 [82.2 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libkdb5-9 armhf 1.16-2 [67.3 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libkadm5srv-mit11 armhf 1.16-2 [77.7 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libkadm5clnt-mit11 armhf 1.16-2 [68.3 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf krb5-multidev armhf 1.16-2 [155 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [117 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libfuse2 armhf 2.9.7-1 [114 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libsepol1-dev armhf 2.8-1 [309 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libselinux1-dev armhf 2.8-1 [156 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libfuse-dev armhf 2.9.7-1 [144 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2.1 [386 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libglobus-common0 armhf 17.4-1 [86.2 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libglobus-callout0 armhf 3.15-2 [9838 B]
Get:87 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2.1 [158 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libglobus-common-dev armhf 17.4-1 [50.0 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libglobus-callout-dev armhf 3.15-2 [5622 B]
Get:90 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-openssl-error0 armhf 3.8-2 [8190 B]
Get:91 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-ssl1 armhf 5.10-2 [7680 B]
Get:92 http://172.17.0.1/private buster-staging/main armhf libglobus-openssl-module0 armhf 4.8-2 [5916 B]
Get:93 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-cert-utils0 armhf 9.16-2 [10.8 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-sysconfig1 armhf 8.1-1 [20.1 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-callback0 armhf 5.13-2 [25.5 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libssl-dev armhf 1.1.0h-4 [1376 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-ssl-dev armhf 5.10-2 [6240 B]
Get:98 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-openssl-error-dev armhf 3.8-2 [5214 B]
Get:99 http://172.17.0.1/private buster-staging/main armhf libglobus-openssl-module-dev armhf 4.8-2 [4578 B]
Get:100 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-cert-utils-dev armhf 9.16-2 [6644 B]
Get:101 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-sysconfig-dev armhf 8.1-1 [7696 B]
Get:102 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-callback-dev armhf 5.13-2 [6352 B]
Get:103 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-credential1 armhf 7.14-1 [24.4 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-credential-dev armhf 7.14-1 [7008 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-core0 armhf 8.6-2 [25.4 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-core-dev armhf 8.6-2 [6866 B]
Get:107 http://172.17.0.1/private buster-staging/main armhf libglobus-gssapi-gsi4 armhf 13.8-1 [51.8 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libglobus-gss-assist3 armhf 11.1-1 [21.8 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libglobus-gssapi-gsi-dev armhf 13.8-1 [12.1 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libglobus-gss-assist-dev armhf 11.1-1 [7776 B]
Get:111 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.10-2+rpi1 [85.8 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.10-2+rpi1 [141 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.10-2+rpi1 [15.6 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 19.0-1 [105 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libkrb5-dev armhf 1.16-2 [46.8 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20180210-4 [278 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libpmix2 armhf 2.1.2~rc1-1 [294 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libopenmpi3 armhf 3.1.0-7+rpi1 [1787 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf openmpi-common all 3.1.0-7+rpi1 [159 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf openmpi-bin armhf 3.1.0-7+rpi1 [199 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 3.1.0-7+rpi1 [936 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libperl-dev armhf 5.26.2-6 [2637 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-1 [886 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-1 [27.6 MB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:129 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.6-1 [1185 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.6-1 [43.7 MB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.6.5-3 [19.7 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.6.5-3 [1064 B]
Get:133 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.24.0-1 [655 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf mpi-default-dev armhf 1.13 [5476 B]
Get:136 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:137 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-1 [289 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:139 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:140 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.15-3 [1068 B]
Get:141 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6-1 [79.1 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6-1 [144 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.6.5-3 [1064 B]
Get:144 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.6-1 [508 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.6.5-3 [1268 B]
Get:146 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.6.5-3 [1064 B]
Get:147 http://172.17.0.1/private buster-staging/main armhf swig3.0 armhf 3.0.12-1.1 [1225 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf swig armhf 3.0.12-1.1 [310 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libmagic1:armhf (1:5.33-3) ...
Setting up libgraphite2-3:armhf (1.3.11-2) ...
Setting up libssl1.0.2:armhf (1.0.2o-1) ...
Setting up pkg-config (0.29-4) ...
Setting up libglobus-gsi-proxy-ssl1:armhf (5.10-2) ...
Setting up libevent-pthreads-2.1-6:armhf (2.1.8-stable-4) ...
Setting up openmpi-common (3.1.0-7+rpi1) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libltdl7:armhf (2.4.6-2.1) ...
Setting up libexpat1-dev:armhf (2.2.5-3) ...
Setting up libpciaccess0:armhf (0.14-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-9) ...
Setting up libpcre32-3:armhf (2:8.39-9) ...
Setting up libpcre16-3:armhf (2:8.39-9) ...
Setting up ocl-icd-libopencl1:armhf (2.2.12-1) ...
Setting up libkeyutils1:armhf (1.5.9-9.2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up net-tools (1.60+git20161116.90da8a0-2) ...
Setting up libncurses-dev:armhf (6.1+20180210-4) ...
Setting up libpython2.7-stdlib:armhf (2.7.15-1) ...
Setting up autopoint (0.19.8.1-6) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.042-1) ...
Setting up libedit2:armhf (3.1-20180525-1) ...
Setting up libpython3.6-stdlib:armhf (3.6.6-1) ...
Setting up libmariadbclient-dev (1:10.1.29-6+b1) ...
Setting up libpcre3-dev:armhf (2:8.39-9) ...
Setting up swig (3.0.12-1.1) ...
Setting up libglobus-common0:armhf (17.4-1) ...
Setting up libglobus-gsi-openssl-error0:armhf (3.8-2) ...
Setting up python3.6 (3.6.6-1) ...
Setting up libltdl-dev:armhf (2.4.6-2.1) ...
Setting up libllvm6.0:armhf (1:6.0.1-2+rpi1) ...
Setting up libmariadbclient-dev-compat:armhf (1:10.1.29-6+b1) ...
Setting up libglobus-openssl-module0:armhf (4.8-2) ...
Setting up python2.7 (2.7.15-1) ...
Setting up libclang1-6.0:armhf (1:6.0.1-2+rpi1) ...
Setting up libharfbuzz0b:armhf (1.8.2-2) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.33-3) ...
Setting up libhwloc5:armhf (1.11.10-2+rpi1) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up libglobus-callout0:armhf (3.15-2) ...
Setting up libglobus-gsi-proxy-ssl-dev:armhf (5.10-2) ...
Setting up libglobus-gsi-sysconfig1:armhf (8.1-1) ...
Setting up libpython2.7:armhf (2.7.15-1) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2-stdlib:armhf (2.7.15-3) ...
Setting up libpython2.7-dev:armhf (2.7.15-1) ...
Setting up default-libmysqlclient-dev:armhf (1.0.4) ...
Setting up libselinux1-dev:armhf (2.8-1) ...
Setting up python2.7-dev (2.7.15-1) ...
Setting up libpython3.6:armhf (3.6.6-1) ...
Setting up libtool (2.4.6-2.1) ...
Setting up libpython3-stdlib:armhf (3.6.5-3) ...
Setting up libibverbs1:armhf (19.0-1) ...
Setting up libglobus-common-dev:armhf (17.4-1) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libglobus-gsi-cert-utils0:armhf (9.16-2) ...
Setting up python3 (3.6.5-3) ...
Setting up libhwloc-dev:armhf (1.11.10-2+rpi1) ...
Setting up doxygen (1.8.13-10) ...
Setting up libglobus-callout-dev:armhf (3.15-2) ...
Setting up libfuse-dev (2.9.7-1) ...
Setting up libpython3.6-dev:armhf (3.6.6-1) ...
Setting up python2 (2.7.15-3) ...
Setting up libpython2-dev:armhf (2.7.15-3) ...
Setting up libpython-stdlib:armhf (2.7.15-3) ...
Setting up ibverbs-providers:armhf (19.0-1) ...
Setting up python2-dev (2.7.15-3) ...
Setting up libglobus-gsi-callback0:armhf (5.13-2) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libglobus-gsi-openssl-error-dev:armhf (3.8-2) ...
Setting up python3.6-dev (3.6.6-1) ...
Setting up python3-lib2to3 (3.6.6-1) ...
Setting up dh-python (3.20180326) ...
Setting up libibverbs-dev:armhf (19.0-1) ...
Setting up python3-distutils (3.6.6-1) ...
Setting up python (2.7.15-3) ...
Setting up libpython3-dev:armhf (3.6.5-3) ...
Setting up libpython-dev:armhf (2.7.15-3) ...
Setting up python-dev (2.7.15-3) ...
Setting up libpython-all-dev:armhf (2.7.15-3) ...
Setting up python3-dev (3.6.5-3) ...
Setting up libglobus-gsi-credential1:armhf (7.14-1) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up libglobus-openssl-module-dev:armhf (4.8-2) ...
Setting up libpython3-all-dev:armhf (3.6.5-3) ...
Setting up python3-all (3.6.5-3) ...
Setting up libglobus-gsi-proxy-core0:armhf (8.6-2) ...
Setting up openssh-client (1:7.7p1-3) ...
Setting up python-all (2.7.15-3) ...
Setting up libgssrpc4:armhf (1.16-2) ...
Setting up libglobus-gsi-cert-utils-dev:armhf (9.16-2) ...
Setting up python3-all-dev (3.6.5-3) ...
Setting up libkdb5-9:armhf (1.16-2) ...
Setting up libglobus-gsi-sysconfig-dev:armhf (8.1-1) ...
Setting up libglobus-gsi-callback-dev:armhf (5.13-2) ...
Setting up python-all-dev (2.7.15-3) ...
Setting up libglobus-gssapi-gsi4:armhf (13.8-1) ...
Setting up libkadm5srv-mit11:armhf (1.16-2) ...
Setting up libkadm5clnt-mit11:armhf (1.16-2) ...
Setting up libglobus-gsi-credential-dev:armhf (7.14-1) ...
Setting up libglobus-gss-assist3:armhf (11.1-1) ...
Setting up krb5-multidev:armhf (1.16-2) ...
Setting up libglobus-gsi-proxy-core-dev:armhf (8.6-2) ...
Setting up libglobus-gssapi-gsi-dev:armhf (13.8-1) ...
Setting up libkrb5-dev:armhf (1.16-2) ...
Setting up libglobus-gss-assist-dev:armhf (11.1-1) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libhwloc-plugins:armhf (1.11.10-2+rpi1) ...
Setting up gettext (0.19.8.1-6) ...
Setting up libpmix2:armhf (2.1.2~rc1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libopenmpi3:armhf (3.1.0-7+rpi1) ...
Setting up po-debconf (1.0.20) ...
Setting up openmpi-bin (3.1.0-7+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: error: no alternatives for mpi
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up debhelper (11.3.5) ...
Setting up dh-autoreconf (19) ...
Setting up libopenmpi-dev:armhf (3.1.0-7+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up mpi-default-dev (1.13) ...
Setting up sbuild-build-depends-cctools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 comerr-dev_2.1-1.44.2-1 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dbus_1.12.8-3 dbus-user-session_1.12.8-3 debconf_1.5.67 debhelper_11.3.5 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-python_3.20180326 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 doxygen_1.8.13-10 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.8-1 gnupg-agent_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 ibverbs-providers_19.0-1 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 krb5-multidev_1.16-2 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblkid1_2.32-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libclang1-6.0_1:6.0.1-2+rpi1 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libfuse-dev_2.9.7-1 libfuse2_2.9.7-1 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-19 libglib2.0-0_2.56.1-2 libglobus-callout-dev_3.15-2 libglobus-callout0_3.15-2 libglobus-common-dev_17.4-1 libglobus-common0_17.4-1 libglobus-gsi-callback-dev_5.13-2 libglobus-gsi-callback0_5.13-2 libglobus-gsi-cert-utils-dev_9.16-2 libglobus-gsi-cert-utils0_9.16-2 libglobus-gsi-credential-dev_7.14-1 libglobus-gsi-credential1_7.14-1 libglobus-gsi-openssl-error-dev_3.8-2 libglobus-gsi-openssl-error0_3.8-2 libglobus-gsi-proxy-core-dev_8.6-2 libglobus-gsi-proxy-core0_8.6-2 libglobus-gsi-proxy-ssl-dev_5.10-2 libglobus-gsi-proxy-ssl1_5.10-2 libglobus-gsi-sysconfig-dev_8.1-1 libglobus-gsi-sysconfig1_8.1-1 libglobus-gss-assist-dev_11.1-1 libglobus-gss-assist3_11.1-1 libglobus-gssapi-gsi-dev_13.8-1 libglobus-gssapi-gsi4_13.8-1 libglobus-openssl-module-dev_4.8-2 libglobus-openssl-module0_4.8-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libgssapi-krb5-2_1.16-2 libgssrpc4_1.16-2 libharfbuzz0b_1.8.2-2 libhogweed4_3.4-1 libhwloc-dev_1.11.10-2+rpi1 libhwloc-plugins_1.11.10-2+rpi1 libhwloc5_1.11.10-2+rpi1 libibverbs-dev_19.0-1 libibverbs1_19.0-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2 libkadm5clnt-mit11_1.16-2 libkadm5srv-mit11_1.16-2 libkdb5-9_1.16-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5-dev_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 libllvm6.0_1:6.0.1-2+rpi1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmariadbclient-dev_1:10.1.29-6+b1 libmariadbclient-dev-compat_1:10.1.29-6+b1 libmariadbclient18_1:10.1.29-6+b1 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20180210-4 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.5-4 libnss-systemd_238-4 libopenmpi-dev_3.1.0-7+rpi1 libopenmpi3_3.1.0-7+rpi1 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpciaccess0_0.14-1 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl-dev_5.26.2-6 libperl5.24_5.24.1-7 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpmix2_2.1.2~rc1-1 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-2 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-1 libpython2.7-dev_2.7.15-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libpython3-all-dev_3.6.5-3 libpython3-dev_3.6.5-3 libpython3-stdlib_3.6.5-3 libpython3.6_3.6.6-1 libpython3.6-dev_3.6.6-1 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libreadline-dev_7.0-5 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libselinux1-dev_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsepol1-dev_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libsqlite3-dev_3.24.0-1 libss2_1.44.2-1 libssl-dev_1.1.0h-4 libssl1.0.2_1.0.2o-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libxapian30_1.4.6-2 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mime-support_3.61 mount_2.32-0.1 mpi-default-dev_1.13 multiarch-support_2.27-3+rpi1 mysql-common_5.8+1.0.4 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 net-tools_1.60+git20161116.90da8a0-2 netbase_5.4 ocl-icd-libopencl1_2.2.12-1 openmpi-bin_3.1.0-7+rpi1 openmpi-common_3.1.0-7+rpi1 openssh-client_1:7.7p1-3 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-1 python2.7-dev_2.7.15-1 python2.7-minimal_2.7.15-1 python3_3.6.5-3 python3-all_3.6.5-3 python3-all-dev_3.6.5-3 python3-dev_3.6.5-3 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.5-3 python3.6_3.6.6-1 python3.6-dev_3.6.6-1 python3.6-minimal_3.6.6-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-cctools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 swig_3.0.12-1.1 swig3.0_3.0.12-1.1 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_238-4 util-linux_2.32-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Jul 9 08:34:09 2018 UTC
gpgv: using RSA key 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./cctools_7.0.0-1.dsc
dpkg-source: info: extracting cctools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking cctools_7.0.0.orig.tar.xz
dpkg-source: info: unpacking cctools_7.0.0-1.debian.tar.xz
dpkg-source: info: applying sys_openat.patch
dpkg-source: info: applying hurd
dpkg-source: info: applying debian_configure
dpkg-source: info: applying disable_doxygen
dpkg-source: info: applying 2to3
dpkg-source: info: applying rm-sqlite
dpkg-source: info: applying 64-bit.patch
dpkg-source: info: applying multiarch_configure
dpkg-source: info: applying python37-version
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-f3e1a224-b2fe-4b88-a53d-6d1abec6d7ee
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package cctools
dpkg-buildpackage: info: source version 7.0.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build cctools-7.0.0
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from cctools-7.0.0/debian/source/options: --extend-diff-ignore=\.orig$ --compression=xz
fakeroot debian/rules clean
dh clean --buildsystem=makefile --with python2,python3
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
[ -e Makefile.config ] && dh_auto_clean || true
rm Makefile.config configure.rerun
rm: cannot remove 'Makefile.config': No such file or directory
rm: cannot remove 'configure.rerun': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
rm -rf api hdfs-setup.template python/python-workqueue/setup.cfg
# remove testrun left-overs
rm dttools/src/microbench dttools/src/work_queue_example
rm: cannot remove 'dttools/src/microbench': No such file or directory
rm: cannot remove 'dttools/src/work_queue_example': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
find /<<PKGBUILDDIR>> -name '*.test.log' -delete
find /<<PKGBUILDDIR>> -name '*_test' -delete
rm -rf sand/test/filter_verification/random.cand.filter.tmp/
rm -rf sand/test/test_20.cand.filter.tmp/
rm -f sand/test/test_20.cand sand/test/test_20.cfa sand/test/*.log
rm -rf makeflow/test/input/ makeflow/test/worker.pid
rm -rf makeflow/test/dirs/testcase.subdir.01.makeflow.makeflowlog
rm -rf makeflow/test/dirs/testcase.subdir.01.makeflow.wqlog
rm -rf makeflow/test/src/
rm dttools/src/multirun sand/test/banded.log
rm: cannot remove 'dttools/src/multirun': No such file or directory
rm: cannot remove 'sand/test/banded.log': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
rm .configure.tmp.o
rm: cannot remove '.configure.tmp.o': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=makefile
debian/rules build-arch
dh build-arch --buildsystem=makefile --with python2,python3
dh_update_autotools_config -a -O--buildsystem=makefile
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# disable warning about unused results (necessary because warning is error
# is ON)
TWOTOTHREE=/usr/bin/2to3-2.7 CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wno-unused-result" ./configure --with-globus-path /usr \
--with-krb5-path /usr --with-readline-path /usr \
--with-mpi-path /usr --with-fuse-path /usr --with-zlib-path /usr \
--with-python-path /usr
Linux mb-lxc-01 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:04:12 UTC 2018 armv8l GNU/Linux
ignoring unknown package /usr
ignoring unknown package /usr
checking for gcc.../usr/bin/gcc
checking for g++.../usr/bin/g++
checking for GNU make in several places...
checking for make.../usr/bin/make
checking if make is GNU make...yes
checking if gcc supports -Wno-unused-parameter...yes
checking if gcc supports -Wno-unknown-pragmas...yes
checking if gcc supports -Wno-deprecated-declarations...yes
checking if gcc supports -Wno-unused-const-variable...yes
checking if ld supports the --as-needed flag...yes
arm-linux-gnueabihf
using a globus flavor of 'gcc32' (if this is wrong, use the --globus-flavor argument)
checking for /usr/include/gcc32/globus_common.h...no
checking for /usr/include/globus/globus_common.h...yes
checking for /usr/lib/libglobus_gss_assist.so...no
checking for /usr/lib/libglobus_gss_assist.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gss_assist.so...yes
checking for /usr/lib/libglobus_gssapi_gsi.so...no
checking for /usr/lib/libglobus_gssapi_gsi.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gssapi_gsi.so...yes
checking for /usr/lib/libglobus_gsi_proxy_core.so...no
checking for /usr/lib/libglobus_gsi_proxy_core.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_proxy_core.so...yes
checking for /usr/lib/libglobus_gsi_credential.so...no
checking for /usr/lib/libglobus_gsi_credential.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_credential.so...yes
checking for /usr/lib/libglobus_gsi_callback.so...no
checking for /usr/lib/libglobus_gsi_callback.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_callback.so...yes
checking for /usr/lib/libglobus_oldgaa.so...no
checking for /usr/lib/libglobus_oldgaa.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_oldgaa.so...yes
checking for /usr/lib/libglobus_gsi_sysconfig.so...no
checking for /usr/lib/libglobus_gsi_sysconfig.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_sysconfig.so...yes
checking for /usr/lib/libglobus_gsi_cert_utils.so...no
checking for /usr/lib/libglobus_gsi_cert_utils.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_cert_utils.so...yes
checking for /usr/lib/libglobus_openssl.so...no
checking for /usr/lib/libglobus_openssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_openssl.so...yes
checking for /usr/lib/libglobus_openssl_error.so...no
checking for /usr/lib/libglobus_openssl_error.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_openssl_error.so...yes
checking for /usr/lib/libglobus_callout.so...no
checking for /usr/lib/libglobus_callout.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_callout.so...yes
checking for /usr/lib/libglobus_proxy_ssl.so...no
checking for /usr/lib/libglobus_proxy_ssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_proxy_ssl.so...yes
checking for /usr/lib/libglobus_common.so...no
checking for /usr/lib/libglobus_common.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_common.so...yes
checking for /usr/lib/libltdl.so...no
checking for /usr/lib/libltdl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libltdl.so...yes
*** skipping irods support
checking for /usr/lib/libmysqlclient.so...no
checking for /usr/lib/libmysqlclient.a...no
checking for /usr/lib/arm-linux-gnueabihf/libmysqlclient.so...yes
*** skipping xrootd support
*** skipping cvmfs support
checking for /usr/lib/libfuse.so...no
checking for /usr/lib/libfuse.a...no
checking for /usr/lib/arm-linux-gnueabihf/libfuse.so...yes
checking for /usr/lib/libreadline.so...no
checking for /usr/lib/libreadline.a...no
checking for /usr/lib/arm-linux-gnueabihf/libreadline.so...yes
checking for /usr/bin/perl...yes
perl version is 5.26.2
checking for /usr/bin/python2...yes
python version is 2.7.15
checking for /usr/include/python2.7/Python.h...yes
found python development libraries
python version is suitable for umbrella
python version is suitable for prune
python version is suitable for weaver
checking for /usr/bin/python3...yes
checking for /usr/bin/2to3-2.7...yes
python3 version is 3.6.6
checking for /usr/include/python3.6m/Python.h...yes
checking for /usr/bin/python3-config...yes
found python3 development libraries
checking for /usr/bin/swig...yes
checking for /usr/lib/libssl.so...no
checking for /usr/lib/libssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libssl.so...yes
checking for /usr/lib/libcrypto.so...no
checking for /usr/lib/libcrypto.a...no
checking for /usr/lib/arm-linux-gnueabihf/libcrypto.so...yes
checking for /usr/lib/libresolv.so...no
checking for /usr/lib/libresolv.a...no
checking for /usr/lib/arm-linux-gnueabihf/libresolv.so...yes
checking for /usr/lib/libsocket.so...no
checking for /usr/lib/libsocket.a...no
checking for /usr/lib/arm-linux-gnueabihf/libsocket.so...no
checking for /usr/lib/arm-linux-gnueabihf/libsocket.a...no
checking for /usr/lib/libnsl.so...no
checking for /usr/lib/libnsl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libnsl.so...yes
checking for /usr/lib/libz.so...no
checking for /usr/lib/libz.a...no
checking for /usr/lib/arm-linux-gnueabihf/libz.so...yes
checking for gmtime_r in /usr/include/time.h...yes
checking for fdatasync in /usr/include/unistd.h...yes
checking for isnan in /usr/include/math.h...yes
checking for localtime_r in /usr/include/time.h...yes
checking for localtime_s in /usr/include/time.h...no
checking for localtime_s in /usr/include/arm-linux-gnueabihf/time.h...no
checking for openat in /usr/include/fcntl.h...yes
checking for pread in /usr/include/unistd.h...yes
checking for pread64 in /usr/include/unistd.h...yes
checking for pwrite in /usr/include/unistd.h...yes
checking for pwrite64 in /usr/include/unistd.h...yes
checking for strchrnul in /usr/include/string.h...yes
checking for strsignal in /usr/include/string.h...yes
checking for usleep in /usr/include/unistd.h...yes
checking for utime in /usr/include/utime.h...yes
checking for utimensat in /usr/include/sys/stat.h...no
checking for utimensat in /usr/include/arm-linux-gnueabihf/sys/stat.h...yes
checking for header attr/xattr.h...no
checking for header sys/xattr.h...yes
checking for header ifaddrs.h...yes
checking for header inttypes.h...yes
checking for header stdint.h...yes
checking for header sys/statfs.h...yes
checking for header sys/statvfs.h...yes
checking for header syslog.h...yes
checking for doxygen.../usr/bin/doxygen
checking for m4.../usr/bin/m4
checking for nroff.../usr/bin/nroff
checking for package compatibility...
parrot is NOT supported on LINUX ARMHF
resource_monitor IS supported on LINUX
checking for all the things I know how to build...
package dttools found
package batch_job found
package grow found
package makeflow found
package work_queue found
package apps found
package sand found
package allpairs found
package wavefront found
package ftp_lite found
package resource_monitor found
package chirp found
package weaver found
package umbrella found
package deltadb found
package prune found
package doc found
Creating config.mk...
To re-configure, type './configure.rerun'
To build, type 'make'
To build and install, type 'make install'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--buildsystem=makefile
make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
COMPILE address.o
COMPILE auth.o
COMPILE auth_address.o
COMPILE auth_all.o
COMPILE auth_globus.o
COMPILE auth_hostname.o
COMPILE auth_kerberos.o
COMPILE auth_ticket.o
COMPILE auth_unix.o
COMPILE b64.o
COMPILE bitmap.o
COMPILE buffer.o
buffer.c: In function 'buffer_putvfstring':
buffer.c:110:9: warning: unused variable 'used' [-Wunused-variable]
size_t used = inuse(b);
^~~~
COMPILE catalog_query.o
COMPILE category.o
COMPILE cctools.o
COMPILE change_process_title.o
COMPILE chunk.o
COMPILE clean_dir.o
COMPILE compat-at.o
COMPILE console_login.o
COMPILE copy_stream.o
COMPILE copy_tree.o
COMPILE create_dir.o
COMPILE daemon.o
COMPILE datagram.o
COMPILE debug.o
COMPILE debug_file.o
COMPILE debug_journal.o
COMPILE debug_stream.o
COMPILE debug_syslog.o
COMPILE disk_alloc.o
COMPILE domain_name.o
COMPILE domain_name_cache.o
COMPILE dpopen.o
COMPILE elfheader.o
elfheader.c: In function 'elf_interp':
elfheader.c:135:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
case ELFCLASS32: {
^
elfheader.c:172:3: note: here
case ELFCLASS64: {
^~~~
elfheader.c:172:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
case ELFCLASS64: {
^
elfheader.c:209:3: note: here
default:
^~~~~~~
COMPILE envtools.o
COMPILE fast_popen.o
COMPILE fd.o
COMPILE file_cache.o
COMPILE full_io.o
COMPILE get_canonical_path.o
COMPILE get_line.o
COMPILE getopt.o
COMPILE getopt_aux.o
COMPILE gpu_info.o
COMPILE hash_cache.o
COMPILE hash_table.o
hash_table.c: In function 'jenkins_hash':
hash_table.c:339:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
c += ((ub4) k[10] << 24);
~~^~~~~~~~~~~~~~~~~~~~~~
hash_table.c:340:2: note: here
case 10:
^~~~
hash_table.c:341:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
c += ((ub4) k[9] << 16);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:342:2: note: here
case 9:
^~~~
hash_table.c:343:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
c += ((ub4) k[8] << 8);
~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:345:2: note: here
case 8:
^~~~
hash_table.c:346:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
b += ((ub4) k[7] << 24);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:347:2: note: here
case 7:
^~~~
hash_table.c:348:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
b += ((ub4) k[6] << 16);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:349:2: note: here
case 6:
^~~~
hash_table.c:350:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
b += ((ub4) k[5] << 8);
~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:351:2: note: here
case 5:
^~~~
hash_table.c:352:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
b += k[4];
~~^~~~~~~
hash_table.c:353:2: note: here
case 4:
^~~~
hash_table.c:354:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
a += ((ub4) k[3] << 24);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:355:2: note: here
case 3:
^~~~
hash_table.c:356:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
a += ((ub4) k[2] << 16);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:357:2: note: here
case 2:
^~~~
hash_table.c:358:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
a += ((ub4) k[1] << 8);
~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:359:2: note: here
case 1:
^~~~
COMPILE hdfs_library.o
COMPILE histogram.o
COMPILE hmac.o
COMPILE host_disk_info.o
COMPILE host_memory_info.o
COMPILE http_query.o
COMPILE interfaces_address.o
COMPILE itable.o
COMPILE json.o
json.c: In function 'new_value':
json.c:140:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
value->_reserved.object_mem = (*(char **) &value->u.object.values) + values_size;
^~~~~
json.c: In function 'json_parse_ex':
json.c:368:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
(*(json_char **) &top->u.object.values) += string_length + 1;
^
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
case '\n': ++ cur_line; cur_line_begin = i; \
~~~~~~~~~~~~~~~^~~
json.c:263:16: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:187:4: note: here
case ' ': case '\t': case '\r'
^
json.c:263:16: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
case '\n': ++ cur_line; cur_line_begin = i; \
~~~~~~~~~~~~~~~^~~
json.c:395:16: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:187:4: note: here
case ' ': case '\t': case '\r'
^
json.c:395:16: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
case '\n': ++ cur_line; cur_line_begin = i; \
~~~~~~~~~~~~~~~^~~
json.c:558:19: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:187:4: note: here
case ' ': case '\t': case '\r'
^
json.c:558:19: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:583:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (flags & flag_need_comma)
^
json.c:589:19: note: here
default:
^~~~~~~
json.c:190:39: warning: 'string_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
do { if (!state.first_pass) string [string_length] = b; ++ string_length; } while (0);
^
json.c:244:20: note: 'string_length' was declared here
unsigned int string_length;
^~~~~~~~~~~~~
json.c:319:35: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized]
string [string_length ++] = 0x80 | (uc_b2 & 0x3F);
^
json.c:627:48: warning: 'num_fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
num_fraction = (num_fraction * 10) + (b - '0');
~~~~~~~~~~~~~~^~~~~
json.c:619:40: warning: 'num_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
num_e = (num_e * 10) + (b - '0');
~~~~~~~^~~~~
json.c:666:63: warning: 'num_digits' may be used uninitialized in this function [-Wmaybe-uninitialized]
top->u.dbl += ((double) num_fraction) / (pow (10, (double) num_digits));
~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE json_aux.o
COMPILE jx.o
jx.c: In function 'jx_copy':
jx.c:598:10: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized]
c->line = j->line;
~~~~~~~~^~~~~~~~~
COMPILE jx_database.o
COMPILE jx_getopt.o
COMPILE jx_match.o
COMPILE jx_parse.o
COMPILE jx_print.o
COMPILE jx_pretty_print.o
COMPILE jx_table.o
COMPILE jx_export.o
COMPILE jx_eval.o
COMPILE jx_function.o
COMPILE link.o
COMPILE link_auth.o
COMPILE list.o
list.c: In function 'cctools_list_seek':
list.c:213:9: warning: unused variable 'ok' [-Wunused-variable]
bool ok = list_prev(cur);
^~
list.c:225:9: warning: unused variable 'ok' [-Wunused-variable]
bool ok = list_next(cur);
^~
list.c: In function 'cctools_list_splice':
list.c:294:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
bool ok;
^~
list.c: In function 'cctools_list_delete':
list.c:364:7: warning: unused variable 'ok' [-Wunused-variable]
bool ok = list_destroy(l);
^~
list.c: In function 'cctools_list_remove':
list.c:467:7: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
bool ok;
^~
COMPILE load_average.o
COMPILE md5.o
COMPILE memfdexe.o
COMPILE mkdir_recursive.o
COMPILE twister.o
COMPILE nvpair.o
COMPILE nvpair_jx.o
COMPILE password_cache.o
COMPILE path.o
COMPILE path_disk_size_info.o
COMPILE pattern.o
In file included from pattern.c:30:0:
luapatt.c: In function 'match':
luapatt.c:311:16: warning: this statement may fall through [-Wimplicit-fallthrough=]
s++; /* 1 match already done */
~^~
luapatt.c:313:13: note: here
case '*': /* 0 or more repetitions */
^~~~
COMPILE preadwrite.o
COMPILE process.o
COMPILE random.o
COMPILE rmonitor.o
COMPILE rmonitor_poll.o
COMPILE rmsummary.o
COMPILE set.o
COMPILE semaphore.o
COMPILE sha1.o
COMPILE shell.o
COMPILE sh_popen.o
COMPILE sigdef.o
COMPILE sleeptools.o
COMPILE sort_dir.o
COMPILE stats.o
stats.c: In function 'stats_touch':
stats.c:44:7: warning: unused variable 'rc' [-Wunused-variable]
int rc = hash_table_insert(stats, name, s);
^~
COMPILE string_array.o
COMPILE stringtools.o
COMPILE string_set.o
COMPILE text_array.o
COMPILE text_list.o
COMPILE timer.o
COMPILE timestamp.o
COMPILE unlink_recursive.o
COMPILE uptime.o
COMPILE url_encode.o
COMPILE username.o
COMPILE uuid.o
COMPILE xxmalloc.o
ar rv libdttools.a address.o auth.o auth_address.o auth_all.o auth_globus.o auth_hostname.o auth_kerberos.o auth_ticket.o auth_unix.o b64.o bitmap.o buffer.o catalog_query.o category.o cctools.o change_process_title.o chunk.o clean_dir.o compat-at.o console_login.o copy_stream.o copy_tree.o create_dir.o daemon.o datagram.o debug.o debug_file.o debug_journal.o debug_stream.o debug_syslog.o disk_alloc.o domain_name.o domain_name_cache.o dpopen.o elfheader.o envtools.o fast_popen.o fd.o file_cache.o full_io.o get_canonical_path.o get_line.o getopt.o getopt_aux.o gpu_info.o hash_cache.o hash_table.o hdfs_library.o histogram.o hmac.o host_disk_info.o host_memory_info.o http_query.o interfaces_address.o itable.o json.o json_aux.o jx.o jx_database.o jx_getopt.o jx_match.o jx_parse.o jx_print.o jx_pretty_print.o jx_table.o jx_export.o jx_eval.o jx_function.o link.o link_auth.o list.o load_average.o md5.o memfdexe.o mkdir_recursive.o twister.o nvpair.o nvpair_jx.o password_cache.o path.o path_disk_size_info.o pattern.o preadwrite.o process.o random.o rmonitor.o rmonitor_poll.o rmsummary.o set.o semaphore.o sha1.o shell.o sh_popen.o sigdef.o sleeptools.o sort_dir.o stats.o string_array.o stringtools.o string_set.o text_array.o text_list.o timer.o timestamp.o unlink_recursive.o uptime.o url_encode.o username.o uuid.o xxmalloc.o
ar: creating libdttools.a
a - address.o
a - auth.o
a - auth_address.o
a - auth_all.o
a - auth_globus.o
a - auth_hostname.o
a - auth_kerberos.o
a - auth_ticket.o
a - auth_unix.o
a - b64.o
a - bitmap.o
a - buffer.o
a - catalog_query.o
a - category.o
a - cctools.o
a - change_process_title.o
a - chunk.o
a - clean_dir.o
a - compat-at.o
a - console_login.o
a - copy_stream.o
a - copy_tree.o
a - create_dir.o
a - daemon.o
a - datagram.o
a - debug.o
a - debug_file.o
a - debug_journal.o
a - debug_stream.o
a - debug_syslog.o
a - disk_alloc.o
a - domain_name.o
a - domain_name_cache.o
a - dpopen.o
a - elfheader.o
a - envtools.o
a - fast_popen.o
a - fd.o
a - file_cache.o
a - full_io.o
a - get_canonical_path.o
a - get_line.o
a - getopt.o
a - getopt_aux.o
a - gpu_info.o
a - hash_cache.o
a - hash_table.o
a - hdfs_library.o
a - histogram.o
a - hmac.o
a - host_disk_info.o
a - host_memory_info.o
a - http_query.o
a - interfaces_address.o
a - itable.o
a - json.o
a - json_aux.o
a - jx.o
a - jx_database.o
a - jx_getopt.o
a - jx_match.o
a - jx_parse.o
a - jx_print.o
a - jx_pretty_print.o
a - jx_table.o
a - jx_export.o
a - jx_eval.o
a - jx_function.o
a - link.o
a - link_auth.o
a - list.o
a - load_average.o
a - md5.o
a - memfdexe.o
a - mkdir_recursive.o
a - twister.o
a - nvpair.o
a - nvpair_jx.o
a - password_cache.o
a - path.o
a - path_disk_size_info.o
a - pattern.o
a - preadwrite.o
a - process.o
a - random.o
a - rmonitor.o
a - rmonitor_poll.o
a - rmsummary.o
a - set.o
a - semaphore.o
a - sha1.o
a - shell.o
a - sh_popen.o
a - sigdef.o
a - sleeptools.o
a - sort_dir.o
a - stats.o
a - string_array.o
a - stringtools.o
a - string_set.o
a - text_array.o
a - text_list.o
a - timer.o
a - timestamp.o
a - unlink_recursive.o
a - uptime.o
a - url_encode.o
a - username.o
a - uuid.o
a - xxmalloc.o
ranlib libdttools.a
COMPILE libforce_halt_enospc.o
COMPILE libforce_halt_enospc.so
COMPILE catalog_update.o
LINK catalog_update
COMPILE catalog_server.o
LINK catalog_server
COMPILE watchdog.o
LINK watchdog
COMPILE disk_allocator.o
LINK disk_allocator
COMPILE jx2json.o
LINK jx2json
COMPILE jx2env.o
LINK jx2env
COMPILE catalog_query_tool.o
LINK catalog_query
COMPILE auth_test.o
LINK auth_test
COMPILE disk_alloc_test.o
LINK disk_alloc_test
COMPILE jx_test.o
LINK jx_test
COMPILE microbench.o
LINK microbench
COMPILE multirun.o
LINK multirun
COMPILE jx_count_obj_test.o
LINK jx_count_obj_test
COMPILE histogram_test.o
LINK histogram_test
COMPILE category_test.o
LINK category_test
rm watchdog.o catalog_update.o category_test.o jx_test.o multirun.o histogram_test.o jx2env.o jx2json.o jx_count_obj_test.o disk_alloc_test.o disk_allocator.o catalog_server.o microbench.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
COMPILE chirp_tool.o
COMPILE chirp_global.o
COMPILE chirp_multi.o
chirp_multi.c: In function 'chirp_volume_open':
chirp_multi.c:110:23: warning: '/key' directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
sprintf(filename, "%s/key", v->root);
^~~~
chirp_multi.c:110:2: note: 'sprintf' output between 5 and 1028 bytes into a destination of size 1024
sprintf(filename, "%s/key", v->root);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c:123:23: warning: '/hosts' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
sprintf(filename, "%s/hosts", v->root);
^~~~~~
chirp_multi.c:123:2: note: 'sprintf' output between 7 and 1030 bytes into a destination of size 1024
sprintf(filename, "%s/hosts", v->root);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c: In function 'chirp_multi_create':
chirp_multi.c:289:25: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(keypath, "/%s", current_volume->key);
^
chirp_multi.c:289:4: note: 'sprintf' output between 2 and 1025 bytes into a destination of size 1024
sprintf(keypath, "/%s", current_volume->key);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c:301:29: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(info.rpath, "%s/%s", current_volume->key, cookie);
^
chirp_multi.c:301:3: note: 'sprintf' output 2 or more bytes (assuming 1025) into a destination of size 1024
sprintf(info.rpath, "%s/%s", current_volume->key, cookie);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE chirp_recursive.o
COMPILE chirp_reli.o
COMPILE chirp_client.o
COMPILE chirp_matrix.o
COMPILE chirp_stream.o
COMPILE chirp_ticket.o
chirp_ticket.c: In function 'chirp_ticket_read':
chirp_ticket.c:90:9: warning: unused variable 'l' [-Wunused-variable]
size_t l = strlen(ticket);
^
chirp_ticket.c: In function 'chirp_ticket_filename':
chirp_ticket.c:188:7: warning: unused variable 'result' [-Wunused-variable]
int result = chirp_ticket_isticketsubject(ticket_subject, &digest);
^~~~~~
chirp_ticket.c: In function 'chirp_ticket_subject':
chirp_ticket.c:197:6: warning: unused variable 'result' [-Wunused-variable]
int result = chirp_ticket_isticketfilename(ticket_filename, &digest);
^~~~~~
ar rv libchirp.a chirp_global.o chirp_multi.o chirp_recursive.o chirp_reli.o chirp_client.o chirp_matrix.o chirp_stream.o chirp_ticket.o
ar: creating libchirp.a
a - chirp_global.o
a - chirp_multi.o
a - chirp_recursive.o
a - chirp_reli.o
a - chirp_client.o
a - chirp_matrix.o
a - chirp_stream.o
a - chirp_ticket.o
ranlib libchirp.a
LINK chirp
COMPILE chirp_get.o
LINK chirp_get
COMPILE chirp_put.o
LINK chirp_put
COMPILE chirp_stats.o
COMPILE chirp_thirdput.o
COMPILE chirp_alloc.o
chirp_alloc.c: In function 'alloc_state_load':
chirp_alloc.c:120:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
INT64_T result = cfs->pread(s->fd, buffer, sizeof(buffer), 0);
^~~~~~
chirp_alloc.c: In function 'alloc_state_save':
chirp_alloc.c:148:11: warning: variable 'result' set but not used [-Wunused-but-set-variable]
INT64_T result = snprintf(buffer, sizeof(buffer), "%" PRId64 "\n%" PRId64 "\n", s->size, s->inuse);
^~~~~~
chirp_alloc.c: In function 'alloc_state_create':
chirp_alloc.c:166:11: warning: variable 'result' set but not used [-Wunused-but-set-variable]
INT64_T result = snprintf(buffer, sizeof(buffer), "%" PRId64 " 0\n", size);
^~~~~~
COMPILE chirp_audit.o
COMPILE chirp_acl.o
COMPILE chirp_group.o
COMPILE chirp_filesystem.o
COMPILE chirp_fs_hdfs.o
COMPILE chirp_fs_local.o
chirp_fs_local.c: In function 'chirp_fs_local_resolve':
chirp_fs_local.c:384:3: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized]
close(fd);
^~~~~~~~~
COMPILE chirp_fs_local_scheduler.o
COMPILE chirp_fs_chirp.o
COMPILE chirp_fs_confuga.o
COMPILE chirp_job.o
COMPILE chirp_sqlite.o
COMPILE confuga.o
confuga.c: In function 'dbupgrade':
confuga.c:174:11: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 0: {
^
confuga.c:194:3: note: here
case 1: {
^~~~
confuga.c:194:11: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 1: {
^
confuga.c:292:3: note: here
default: {
^~~~~~~
COMPILE confuga_namespace.o
confuga_namespace.c: In function 'fupdate':
confuga_namespace.c:308:6: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int n;
^
confuga_namespace.c: In function 'confuga_metadata_update':
confuga_namespace.c:439:6: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int n;
^
In file included from confuga_namespace.c:9:0:
confuga_namespace.c: In function 'resolve.isra.1':
/<<PKGBUILDDIR>>/dttools/src/catch.h:25:12: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized]
PROTECT(close(fd));\
^~~~~
confuga_namespace.c:109:6: note: 'fd' was declared here
int fd;
^~
COMPILE confuga_replica.o
In file included from /<<PKGBUILDDIR>>/dttools/src/catch.h:10:0,
from chirp_sqlite.h:11,
from confuga_replica.c:10:
confuga_replica.c: In function 'waitall':
/<<PKGBUILDDIR>>/dttools/src/debug.h:112:32: warning: 'id' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define debug cctools_debug
^~~~~~~~~~~~~
confuga_replica.c:1109:17: note: 'id' was declared here
chirp_jobid_t id;
^~
confuga_replica.c: In function 'confugaR_replicate':
confuga_replica.c:229:54: warning: '/file/' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:2: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 4096
snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
confuga_replica.c:252:51: warning: '/file/' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:3: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 4096
snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
confuga_replica.c:286:12: warning: 'size' may be used uninitialized in this function [-Wmaybe-uninitialized]
sqlcatch(sqlite3_bind_int64(stmt, 4, size));
^~~~~~~~~~~~~~~~~~
confuga_replica.c:287:12: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
sqlcatch(sqlite3_bind_int64(stmt, 5, start));
^~~~~~~~~~~~~~~~~~
confuga_replica.c: In function 'confuga_replica_open':
confuga_replica.c:347:51: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size 1024 [-Wformat-truncation=]
snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
^~
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:3: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 1024
snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE confuga_node.o
COMPILE confuga_job.o
confuga_job.c: In function 'confugaJ_schedule':
confuga_job.c:577:11: warning: 'sid' may be used uninitialized in this function [-Wmaybe-uninitialized]
sqlcatch(sqlite3_bind_int64(stmt, 2, sid));
^~~~~~~~~~~~~~~~~~
confuga_job.c:542:16: note: 'sid' was declared here
confuga_sid_t sid;
^~~
COMPILE confuga_file.o
COMPILE confuga_gc.o
ar rv libconfuga.a confuga.o confuga_namespace.o confuga_replica.o confuga_node.o confuga_job.o confuga_file.o confuga_gc.o chirp_global.o chirp_multi.o chirp_recursive.o chirp_reli.o chirp_client.o chirp_matrix.o chirp_stream.o chirp_ticket.o chirp_sqlite.o
ar: creating libconfuga.a
a - confuga.o
a - confuga_namespace.o
a - confuga_replica.o
a - confuga_node.o
a - confuga_job.o
a - confuga_file.o
a - confuga_gc.o
a - chirp_global.o
a - chirp_multi.o
a - chirp_recursive.o
a - chirp_reli.o
a - chirp_client.o
a - chirp_matrix.o
a - chirp_stream.o
a - chirp_ticket.o
a - chirp_sqlite.o
ranlib libconfuga.a
COMPILE chirp_server.o
chirp_server.c: In function 'run_in_child_process':
chirp_server.c:280:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
LINK chirp_server
COMPILE chirp_status.o
LINK chirp_status
COMPILE chirp_benchmark.o
LINK chirp_benchmark
COMPILE chirp_stream_files.o
LINK chirp_stream_files
COMPILE chirp_fuse.o
LINK chirp_fuse
COMPILE chirp_distribute.o
LINK chirp_distribute
COMPILE confuga_adm.o
LINK confuga_adm
COMPILE chirp_swig_wrap.o
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
SWIG chirp.i (perl5)
COMPILE chirp_wrap.o
LINK CChirp.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
SWIG chirp.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE chirp_wrap.o
LINK _CChirp.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
rm chirp_stream_files.o chirp_server.o chirp_get.o confuga_adm.o chirp_put.o chirp_benchmark.o chirp_distribute.o chirp_status.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[2]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
COMPILE work_queue.o
COMPILE work_queue_catalog.o
COMPILE work_queue_resources.o
ar rv libwork_queue.a work_queue.o work_queue_catalog.o work_queue_resources.o
ar: creating libwork_queue.a
a - work_queue.o
a - work_queue_catalog.o
a - work_queue_resources.o
ranlib libwork_queue.a
COMPILE work_queue_process.o
COMPILE work_queue_watcher.o
COMPILE work_queue_worker.o
work_queue_worker.c: In function 'do_thirdget':
work_queue_worker.c:1135:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if(symlink(path, cached_filename) != 0) {
^
work_queue_worker.c:1139:2: note: here
case WORK_QUEUE_FS_PATH:
^~~~
LINK work_queue_worker
COMPILE work_queue_status.o
LINK work_queue_status
COMPILE work_queue_example.o
LINK work_queue_example
COMPILE work_queue_test_main.o
COMPILE work_queue_test.o
LINK work_queue_test
COMPILE work_queue_test_watch.o
LINK work_queue_test_watch
COMPILE work_queue_priority_test.o
LINK work_queue_priority_test
sed -e "s/SGE_CUSTOM_PARAMETERS//" sge_submit_workers_common > sge_submit_workers
chmod 755 sge_submit_workers
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
SWIG work_queue.i (perl5)
COMPILE work_queue_wrap.o
LINK work_queue.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
SWIG work_queue.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE work_queue_wrap.o
LINK _work_queue.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
cp work_queue.binding.py work_queue.binding.py3
chmod 755 work_queue.binding.py3
/usr/bin/2to3-2.7 -w work_queue.binding.py3
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored work_queue.binding.py3
RefactoringTool: Files that were modified:
RefactoringTool: work_queue.binding.py3
--- work_queue.binding.py3 (original)
+++ work_queue.binding.py3 (refactored)
@@ -795,7 +795,7 @@
work_queue_specify_name(self._work_queue, name)
work_queue_specify_master_mode(self._work_queue, catalog)
- except Exception, e:
+ except Exception as e:
raise Exception('Unable to create internal Work Queue structure: %s' % e)
def __free_queue(self):
SWIG work_queue.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE work_queue_wrap.o
LINK _work_queue.so
cp work_queue_example.py work_queue_example.py3
chmod 755 work_queue_example.py3
/usr/bin/2to3-2.7 -w work_queue_example.py3
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored work_queue_example.py3
RefactoringTool: Files that were modified:
RefactoringTool: work_queue_example.py3
--- work_queue_example.py3 (original)
+++ work_queue_example.py3 (refactored)
@@ -19,8 +19,8 @@
port = WORK_QUEUE_DEFAULT_PORT
if len(sys.argv) < 2:
- print "work_queue_example <file1> [file2] [file3] ..."
- print "Each file given on the command line will be compressed using a remote worker."
+ print("work_queue_example <file1> [file2] [file3] ...")
+ print("Each file given on the command line will be compressed using a remote worker.")
sys.exit(1)
# Usually, we can execute the gzip utility by simply typing its name at a
@@ -33,7 +33,7 @@
if not os.path.exists(gzip_path):
gzip_path = "/usr/bin/gzip"
if not os.path.exists(gzip_path):
- print "gzip was not found. Please modify the gzip_path variable accordingly. To determine the location of gzip, from the terminal type: which gzip (usual locations are /bin/gzip and /usr/bin/gzip)"
+ print("gzip was not found. Please modify the gzip_path variable accordingly. To determine the location of gzip, from the terminal type: which gzip (usual locations are /bin/gzip and /usr/bin/gzip)")
sys.exit(1);
# We create the tasks queue using the default port. If this port is already
@@ -42,10 +42,10 @@
try:
q = WorkQueue(port)
except:
- print "Instantiation of Work Queue failed!"
+ print("Instantiation of Work Queue failed!")
sys.exit(1)
- print "listening on port %d..." % q.port
+ print("listening on port %d..." % q.port)
# We create and dispatch a task for each filename given in the argument list
for i in range(1, len(sys.argv)):
@@ -72,19 +72,19 @@
# Once all files has been specified, we are ready to submit the task to the queue.
taskid = q.submit(t)
- print "submitted task (id# %d): %s" % (taskid, t.command)
+ print("submitted task (id# %d): %s" % (taskid, t.command))
- print "waiting for tasks to complete..."
+ print("waiting for tasks to complete...")
while not q.empty():
t = q.wait(5)
if t:
- print "task (id# %d) complete: %s (return code %d)" % (t.id, t.command, t.return_status)
+ print("task (id# %d) complete: %s (return code %d)" % (t.id, t.command, t.return_status))
if t.return_status != 0:
# The task failed. Error handling (e.g., resubmit with new parameters, examine logs, etc.) here
None
#task object will be garbage collected by Python automatically when it goes out of scope
- print "all tasks complete!"
+ print("all tasks complete!")
#work queue object will be garbage collected by Python automatically when it goes out of scope
sys.exit(0)
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
rm work_queue_priority_test.o work_queue_test_watch.o work_queue_test.o work_queue_status.o work_queue_example.o work_queue_worker.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[2]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
COMPILE batch_file.o
COMPILE batch_task.o
COMPILE batch_wrapper.o
batch_wrapper.c: In function 'batch_wrapper_pre':
batch_wrapper.c:53:6: warning: unused variable 'rc' [-Wunused-variable]
int rc = list_push_tail(w->pre, string_escape_shell(cmd));
^~
batch_wrapper.c: In function 'batch_wrapper_argv':
batch_wrapper.c:66:7: warning: unused variable 'rc' [-Wunused-variable]
int rc = list_push_tail(w->argv, string_escape_shell(argv[i]));
^~
batch_wrapper.c: In function 'batch_wrapper_args':
batch_wrapper.c:80:7: warning: unused variable 'rc' [-Wunused-variable]
int rc = list_push_tail(w->argv, string_quote_shell(args[i]));
^~
batch_wrapper.c: In function 'batch_wrapper_post':
batch_wrapper.c:102:6: warning: unused variable 'rc' [-Wunused-variable]
int rc = list_push_tail(w->post, string_escape_shell(cmd));
^~
COMPILE batch_job.o
COMPILE batch_job_amazon.o
COMPILE batch_job_amazon_batch.o
COMPILE batch_job_dryrun.o
COMPILE batch_job_chirp.o
COMPILE batch_job_cluster.o
COMPILE batch_job_blue_waters.o
COMPILE batch_job_condor.o
COMPILE batch_job_local.o
COMPILE batch_job_work_queue.o
COMPILE batch_job_lambda.o
COMPILE batch_job_mesos.o
COMPILE batch_job_k8s.o
batch_job_k8s.c: In function 'batch_job_k8s_gen_running_pod_lst':
batch_job_k8s.c:472:46: warning: comparison is always true due to limited range of data type [-Wtype-limits]
while(pod_state[i] != '\n' && pod_state[i] != EOF)
^~
batch_job_k8s.c:474:43: warning: comparison is always false due to limited range of data type [-Wtype-limits]
if(pod_state[i] == '\n' || pod_state[i] == EOF)
^~
batch_job_k8s.c: In function 'batch_job_k8s_wait':
batch_job_k8s.c:594:61: warning: comparison is always true due to limited range of data type [-Wtype-limits]
while(log_tail_content[i] != '\n' && log_tail_content[i] != EOF)
^~
batch_job_k8s.c:596:58: warning: comparison is always false due to limited range of data type [-Wtype-limits]
if(log_tail_content[i] == '\n' || log_tail_content[i] == EOF)
^~
COMPILE mesos_task.o
ar rv libbatch_job.a batch_file.o batch_task.o batch_wrapper.o batch_job.o batch_job_amazon.o batch_job_amazon_batch.o batch_job_dryrun.o batch_job_chirp.o batch_job_cluster.o batch_job_blue_waters.o batch_job_condor.o batch_job_local.o batch_job_work_queue.o batch_job_lambda.o batch_job_mesos.o batch_job_k8s.o mesos_task.o
ar: creating libbatch_job.a
a - batch_file.o
a - batch_task.o
a - batch_wrapper.o
a - batch_job.o
a - batch_job_amazon.o
a - batch_job_amazon_batch.o
a - batch_job_dryrun.o
a - batch_job_chirp.o
a - batch_job_cluster.o
a - batch_job_blue_waters.o
a - batch_job_condor.o
a - batch_job_local.o
a - batch_job_work_queue.o
a - batch_job_lambda.o
a - batch_job_mesos.o
a - batch_job_k8s.o
a - mesos_task.o
ranlib libbatch_job.a
COMPILE work_queue_factory.o
LINK work_queue_factory
cp work_queue_factory work_queue_pool
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[2]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
COMPILE grow.o
COMPILE grow_fuse.o
LINK grow_fuse
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[2]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
COMPILE dag.o
COMPILE dag_node_footprint.o
COMPILE dag_node.o
COMPILE dag_file.o
COMPILE dag_variable.o
COMPILE dag_visitors.o
COMPILE dag_resources.o
COMPILE lexer.o
COMPILE parser.o
parser.c: In function 'dag_from_file':
parser.c:101:8: warning: this statement may fall through [-Wimplicit-fallthrough=]
dag = jx_tmp;
~~~~^~~~~~~~
parser.c:103:3: note: here
case DAG_SYNTAX_JSON: //Intentional fall-through as JX and JSON both use dag_parse_jx
^~~~
COMPILE parser_make.o
In file included from parser_make.c:32:0:
parser_make.c: In function 'dag_parse_make':
/<<PKGBUILDDIR>>/dttools/src/debug.h:112:32: warning: 'name' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define debug cctools_debug
^~~~~~~~~~~~~
parser_make.c:746:14: note: 'name' was declared here
const char *name;
^~~~
COMPILE parser_jx.o
COMPILE makeflow_alloc.o
COMPILE makeflow_summary.o
In file included from /<<PKGBUILDDIR>>/batch_job/src/batch_file.h:12:0,
from /<<PKGBUILDDIR>>/batch_job/src/batch_task.h:10,
from dag_node.h:11,
from dag.h:10,
from makeflow_summary.c:7:
makeflow_summary.c: In function 'makeflow_summary_create':
/<<PKGBUILDDIR>>/dttools/src/list.h:74:21: warning: 'fn' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define list_find cctools_list_find
^~~~~~~~~~~~~~~~~
makeflow_summary.c:74:14: note: 'fn' was declared here
const char *fn;
^~
COMPILE makeflow_gc.o
COMPILE makeflow_log.o
COMPILE makeflow_wrapper.o
COMPILE makeflow_catalog_reporter.o
COMPILE makeflow_local_resources.o
COMPILE makeflow_wrapper_enforcement.o
COMPILE makeflow_wrapper_umbrella.o
COMPILE makeflow_mounts.o
makeflow_mounts.c: In function 'mount_install_local':
makeflow_mounts.c:107:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if(copy_symlink(source, cache_path)) {
^
makeflow_mounts.c:111:2: note: here
case FILE_TYPE_DIR:
^~~~
COMPILE makeflow_hook.o
COMPILE makeflow_hook_example.o
COMPILE makeflow_module_archive.o
COMPILE makeflow_module_docker.o
COMPILE makeflow_module_fail_dir.o
COMPILE makeflow_module_resource_monitor.o
COMPILE makeflow_module_sandbox.o
COMPILE makeflow_module_shared_fs.o
COMPILE makeflow_module_singularity.o
COMPILE makeflow_module_storage_allocation.o
COMPILE makeflow_module_vc3_builder.o
COMPILE makeflow.o
makeflow.c: In function 'main':
makeflow.c:1723:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
if(!strcmp(optarg, "throughput")) {
^
makeflow.c:1732:4: note: here
case LONG_OPT_JSON:
^~~~
makeflow.c:1765:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
makeflow_wrapper_umbrella_set_spec(umbrella, (const char *)xxstrdup(optarg));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makeflow.c:1766:4: note: here
case LONG_OPT_MESOS_MASTER:
^~~~
LINK makeflow
COMPILE makeflow_viz.o
LINK makeflow_viz
COMPILE makeflow_analyze.o
LINK makeflow_analyze
COMPILE makeflow_linker.o
makeflow_linker.c: In function 'find_dependencies_for':
makeflow_linker.c:255:37: warning: 'original_name' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_dependency->original_name = original_name;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
LINK makeflow_linker
COMPILE makeflow_status.o
LINK makeflow_status
rm makeflow_analyze.o makeflow_linker.o makeflow_viz.o makeflow.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[2]: Entering directory '/<<PKGBUILDDIR>>/apps'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[2]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
COMPILE compressed_sequence.o
COMPILE sequence_filter.o
COMPILE sequence.o
COMPILE matrix.o
COMPILE overlap.o
COMPILE align.o
ar rv libsandtools.a compressed_sequence.o sequence_filter.o sequence.o matrix.o overlap.o align.o
ar: creating libsandtools.a
a - compressed_sequence.o
a - sequence_filter.o
a - sequence.o
a - matrix.o
a - overlap.o
a - align.o
ranlib libsandtools.a
COMPILE sand_align_master.o
LINK sand_align_master
COMPILE sand_align_kernel.o
LINK sand_align_kernel
COMPILE sand_filter_master.o
LINK sand_filter_master
COMPILE sand_filter_kernel.o
LINK sand_filter_kernel
COMPILE sand_compress_reads.o
LINK sand_compress_reads
COMPILE sand_uncompress_reads.o
LINK sand_uncompress_reads
rm sand_compress_reads.o sand_uncompress_reads.o sand_align_master.o sand_filter_master.o sand_align_kernel.o sand_filter_kernel.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[2]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
COMPILE allpairs_compare.o
COMPILE allpairs_multicore.o
LINK allpairs_multicore
COMPILE allpairs_master.o
allpairs_master.c: In function 'estimate_run_time':
allpairs_master.c:91:25: warning: 'stoptime' may be used uninitialized in this function [-Wmaybe-uninitialized]
timestamp_t starttime, stoptime;
^~~~~~~~
allpairs_master.c:123:57: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
double t = (double)(stoptime - starttime) / (x * ystop + y + 1) / 1000000;
~~~~~~~~~~^~~
LINK allpairs_master
rm allpairs_master.o allpairs_multicore.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[2]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
COMPILE wavefront.o
LINK wavefront
COMPILE wavefront_master.o
LINK wavefront_master
rm wavefront_master.o wavefront.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[2]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
COMPILE ftp_lite.o
COMPILE error.o
COMPILE radix.o
radix.c: In function 'ftp_lite_radix_encode':
radix.c:62:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
outbuf[j++] = pad;
~~~~~~~~~~~~^~~~~
radix.c:63:2: note: here
case 2:
^~~~
COMPILE login.o
COMPILE network.o
ar rv libftp_lite.a ftp_lite.o error.o radix.o login.o network.o
ar: creating libftp_lite.a
a - ftp_lite.o
a - error.o
a - radix.o
a - login.o
a - network.o
ranlib libftp_lite.a
COMPILE ftp_lite_test.o
LINK ftp_lite_test
COMPILE ftp_lite_copy.o
LINK ftp_lite_copy
rm ftp_lite_test.o ftp_lite_copy.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[2]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
COMPILE rmonitor_helper.o
COMPILE rmonitor_helper_comm.o
COMPILE librmonitor_helper.so
COMPILE piggybacker.o
LINK piggybacker
./piggybacker rmonitor_piggyback.h librmonitor_helper.so
COMPILE resource_monitor.o
resource_monitor.c: In function 'rmonitor_handle_inotify':
resource_monitor.c:748:3: warning: 'evdata' may be used uninitialized in this function [-Wmaybe-uninitialized]
free(evdata);
^~~~~~~~~~~~
resource_monitor.c:723:8: warning: 'finfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (finfo == NULL) {
^
COMPILE rmonitor_file_watch.o
LINK resource_monitor
COMPILE rmonitor_poll_example.o
LINK rmonitor_poll_example
COMPILE rmonitor_snapshot.o
LINK rmonitor_snapshot
COMPILE resource_monitor_histograms.o
COMPILE resource_monitor_tools.o
LINK resource_monitor_histograms
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
SWIG rmonitor.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE rmonitor_wrap.o
LINK _cResourceMonitor.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[2]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
sed 's%CCTOOLS_VERSION%7.0.0 %' < weaver.in > weaver.py
chmod 755 weaver.py
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[2]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
sed 's%CCTOOLS_VERSION%7.0.0 %' < umbrella.py > umbrella
chmod 755 umbrella
# pydoc2/pydoc creates a html file, umbrella.html.
if which pydoc2; then pydoc2 -w umbrella; elif which pydoc; then pydoc -w umbrella; fi
/usr/bin/pydoc2
wrote umbrella.html
if [ -f umbrella.html ]; then mv umbrella.html umbrella_helper.html; fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[2]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
COMPILE deltadb_stream.o
COMPILE deltadb_reduction.o
deltadb_reduction.c: In function 'deltadb_reduction_value':
deltadb_reduction.c:91:9: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
return value;
^~~~~
ar rv libdeltadb.a deltadb_stream.o deltadb_reduction.o
ar: creating libdeltadb.a
a - deltadb_stream.o
a - deltadb_reduction.o
ranlib libdeltadb.a
COMPILE deltadb_query.o
LINK deltadb_query
rm deltadb_query.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[2]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
sed 's%CCTOOLS_VERSION%7.0.0 %' < prune_worker.py | sed 's%CCTOOLS_RELEASE_DATE%%' > prune_worker
chmod 755 prune_worker
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
mkdir -p api/html
pod2html ../work_queue/src/perl/Work_Queue.pm > api/html/work_queue_perl.html
mkdir -p api/html
pod2html ../work_queue/src/perl/Work_Queue/Task.pm > api/html/work_queue_task_perl.html
mkdir -p api/html
pod2html ../chirp/src/perl/Chirp/Client.pm > api/html/chirp_client_perl.html
mkdir -p api/html
pod2html ../chirp/src/perl/Chirp/Stat.pm > api/html/chirp_stat_perl.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/allpairs_master.m4 > man/allpairs_master.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/allpairs_multicore.m4 > man/allpairs_multicore.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/catalog_query.m4 > man/catalog_query.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/catalog_server.m4 > man/catalog_server.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/catalog_update.m4 > man/catalog_update.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp.m4 > man/chirp.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_benchmark.m4 > man/chirp_benchmark.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_distribute.m4 > man/chirp_distribute.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_fuse.m4 > man/chirp_fuse.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_get.m4 > man/chirp_get.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_put.m4 > man/chirp_put.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_server.m4 > man/chirp_server.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_server_hdfs.m4 > man/chirp_server_hdfs.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_status.m4 > man/chirp_status.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_stream_files.m4 > man/chirp_stream_files.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chroot_package_run.m4 > man/chroot_package_run.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/condor_submit_workers.m4 > man/condor_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/confuga.m4 > man/confuga.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/confuga_adm.m4 > man/confuga_adm.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/deltadb_query.m4 > man/deltadb_query.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/disk_allocator.m4 > man/disk_allocator.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/make_growfs.m4 > man/make_growfs.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow.m4 > man/makeflow.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_amazon_batch_cleanup.m4 > man/makeflow_amazon_batch_cleanup.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_amazon_batch_setup.m4 > man/makeflow_amazon_batch_setup.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_analyze.m4 > man/makeflow_analyze.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_blast.m4 > man/makeflow_blast.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_cleanup.m4 > man/makeflow_ec2_cleanup.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_setup.m4 > man/makeflow_ec2_setup.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_graph_log.m4 > man/makeflow_graph_log.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_linker.m4 > man/makeflow_linker.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_monitor.m4 > man/makeflow_monitor.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_status.m4 > man/makeflow_status.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_viz.m4 > man/makeflow_viz.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/maker_wq.m4 > man/maker_wq.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_cp.m4 > man/parrot_cp.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_getacl.m4 > man/parrot_getacl.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_locate.m4 > man/parrot_locate.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_lsalloc.m4 > man/parrot_lsalloc.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_md5.m4 > man/parrot_md5.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_mkalloc.m4 > man/parrot_mkalloc.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_namespace.m4 > man/parrot_namespace.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_package_create.m4 > man/parrot_package_create.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_package_run.m4 > man/parrot_package_run.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_run.m4 > man/parrot_run.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_setacl.m4 > man/parrot_setacl.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_timeout.m4 > man/parrot_timeout.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_whoami.m4 > man/parrot_whoami.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/pbs_submit_workers.m4 > man/pbs_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/replica_exchange.m4 > man/replica_exchange.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/resource_monitor.m4 > man/resource_monitor.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_histograms.m4 > man/resource_monitor_histograms.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_visualizer.m4 > man/resource_monitor_visualizer.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_align_kernel.m4 > man/sand_align_kernel.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_align_master.m4 > man/sand_align_master.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_compress_reads.m4 > man/sand_compress_reads.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_filter_kernel.m4 > man/sand_filter_kernel.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_filter_master.m4 > man/sand_filter_master.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_uncompress_reads.m4 > man/sand_uncompress_reads.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sge_submit_workers.m4 > man/sge_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/split_fasta.m4 > man/split_fasta.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/starch.m4 > man/starch.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/torque_submit_workers.m4 > man/torque_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/wavefront_master.m4 > man/wavefront_master.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/weaver.m4 > man/weaver.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_factory.m4 > man/work_queue_factory.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_graph_log.m4 > man/work_queue_graph_log.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_pool.m4 > man/work_queue_pool.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_status.m4 > man/work_queue_status.html
m4 -DHTML -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_worker.m4 > man/work_queue_worker.html
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/allpairs_master.m4 > man/allpairs_master.1
gzip < man/allpairs_master.1 > man/allpairs_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/allpairs_multicore.m4 > man/allpairs_multicore.1
gzip < man/allpairs_multicore.1 > man/allpairs_multicore.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/catalog_query.m4 > man/catalog_query.1
gzip < man/catalog_query.1 > man/catalog_query.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/catalog_server.m4 > man/catalog_server.1
gzip < man/catalog_server.1 > man/catalog_server.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/catalog_update.m4 > man/catalog_update.1
gzip < man/catalog_update.1 > man/catalog_update.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp.m4 > man/chirp.1
gzip < man/chirp.1 > man/chirp.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_benchmark.m4 > man/chirp_benchmark.1
gzip < man/chirp_benchmark.1 > man/chirp_benchmark.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_distribute.m4 > man/chirp_distribute.1
gzip < man/chirp_distribute.1 > man/chirp_distribute.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_fuse.m4 > man/chirp_fuse.1
gzip < man/chirp_fuse.1 > man/chirp_fuse.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_get.m4 > man/chirp_get.1
gzip < man/chirp_get.1 > man/chirp_get.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_put.m4 > man/chirp_put.1
gzip < man/chirp_put.1 > man/chirp_put.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_server.m4 > man/chirp_server.1
gzip < man/chirp_server.1 > man/chirp_server.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_server_hdfs.m4 > man/chirp_server_hdfs.1
gzip < man/chirp_server_hdfs.1 > man/chirp_server_hdfs.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_status.m4 > man/chirp_status.1
gzip < man/chirp_status.1 > man/chirp_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chirp_stream_files.m4 > man/chirp_stream_files.1
gzip < man/chirp_stream_files.1 > man/chirp_stream_files.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/chroot_package_run.m4 > man/chroot_package_run.1
gzip < man/chroot_package_run.1 > man/chroot_package_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/condor_submit_workers.m4 > man/condor_submit_workers.1
gzip < man/condor_submit_workers.1 > man/condor_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/confuga.m4 > man/confuga.1
gzip < man/confuga.1 > man/confuga.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/confuga_adm.m4 > man/confuga_adm.1
gzip < man/confuga_adm.1 > man/confuga_adm.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/deltadb_query.m4 > man/deltadb_query.1
gzip < man/deltadb_query.1 > man/deltadb_query.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/disk_allocator.m4 > man/disk_allocator.1
gzip < man/disk_allocator.1 > man/disk_allocator.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/make_growfs.m4 > man/make_growfs.1
gzip < man/make_growfs.1 > man/make_growfs.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow.m4 > man/makeflow.1
gzip < man/makeflow.1 > man/makeflow.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_amazon_batch_cleanup.m4 > man/makeflow_amazon_batch_cleanup.1
gzip < man/makeflow_amazon_batch_cleanup.1 > man/makeflow_amazon_batch_cleanup.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_amazon_batch_setup.m4 > man/makeflow_amazon_batch_setup.1
gzip < man/makeflow_amazon_batch_setup.1 > man/makeflow_amazon_batch_setup.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_analyze.m4 > man/makeflow_analyze.1
gzip < man/makeflow_analyze.1 > man/makeflow_analyze.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_blast.m4 > man/makeflow_blast.1
gzip < man/makeflow_blast.1 > man/makeflow_blast.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_cleanup.m4 > man/makeflow_ec2_cleanup.1
gzip < man/makeflow_ec2_cleanup.1 > man/makeflow_ec2_cleanup.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_setup.m4 > man/makeflow_ec2_setup.1
gzip < man/makeflow_ec2_setup.1 > man/makeflow_ec2_setup.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_graph_log.m4 > man/makeflow_graph_log.1
gzip < man/makeflow_graph_log.1 > man/makeflow_graph_log.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_linker.m4 > man/makeflow_linker.1
gzip < man/makeflow_linker.1 > man/makeflow_linker.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_monitor.m4 > man/makeflow_monitor.1
gzip < man/makeflow_monitor.1 > man/makeflow_monitor.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_status.m4 > man/makeflow_status.1
gzip < man/makeflow_status.1 > man/makeflow_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/makeflow_viz.m4 > man/makeflow_viz.1
gzip < man/makeflow_viz.1 > man/makeflow_viz.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/maker_wq.m4 > man/maker_wq.1
gzip < man/maker_wq.1 > man/maker_wq.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_cp.m4 > man/parrot_cp.1
gzip < man/parrot_cp.1 > man/parrot_cp.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_getacl.m4 > man/parrot_getacl.1
gzip < man/parrot_getacl.1 > man/parrot_getacl.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_locate.m4 > man/parrot_locate.1
gzip < man/parrot_locate.1 > man/parrot_locate.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_lsalloc.m4 > man/parrot_lsalloc.1
gzip < man/parrot_lsalloc.1 > man/parrot_lsalloc.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_md5.m4 > man/parrot_md5.1
gzip < man/parrot_md5.1 > man/parrot_md5.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_mkalloc.m4 > man/parrot_mkalloc.1
gzip < man/parrot_mkalloc.1 > man/parrot_mkalloc.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_namespace.m4 > man/parrot_namespace.1
gzip < man/parrot_namespace.1 > man/parrot_namespace.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_package_create.m4 > man/parrot_package_create.1
gzip < man/parrot_package_create.1 > man/parrot_package_create.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_package_run.m4 > man/parrot_package_run.1
gzip < man/parrot_package_run.1 > man/parrot_package_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_run.m4 > man/parrot_run.1
gzip < man/parrot_run.1 > man/parrot_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_setacl.m4 > man/parrot_setacl.1
gzip < man/parrot_setacl.1 > man/parrot_setacl.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_timeout.m4 > man/parrot_timeout.1
gzip < man/parrot_timeout.1 > man/parrot_timeout.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/parrot_whoami.m4 > man/parrot_whoami.1
gzip < man/parrot_whoami.1 > man/parrot_whoami.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/pbs_submit_workers.m4 > man/pbs_submit_workers.1
gzip < man/pbs_submit_workers.1 > man/pbs_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/replica_exchange.m4 > man/replica_exchange.1
gzip < man/replica_exchange.1 > man/replica_exchange.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/resource_monitor.m4 > man/resource_monitor.1
gzip < man/resource_monitor.1 > man/resource_monitor.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_histograms.m4 > man/resource_monitor_histograms.1
gzip < man/resource_monitor_histograms.1 > man/resource_monitor_histograms.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_visualizer.m4 > man/resource_monitor_visualizer.1
gzip < man/resource_monitor_visualizer.1 > man/resource_monitor_visualizer.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_align_kernel.m4 > man/sand_align_kernel.1
gzip < man/sand_align_kernel.1 > man/sand_align_kernel.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_align_master.m4 > man/sand_align_master.1
gzip < man/sand_align_master.1 > man/sand_align_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_compress_reads.m4 > man/sand_compress_reads.1
gzip < man/sand_compress_reads.1 > man/sand_compress_reads.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_filter_kernel.m4 > man/sand_filter_kernel.1
gzip < man/sand_filter_kernel.1 > man/sand_filter_kernel.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_filter_master.m4 > man/sand_filter_master.1
gzip < man/sand_filter_master.1 > man/sand_filter_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sand_uncompress_reads.m4 > man/sand_uncompress_reads.1
gzip < man/sand_uncompress_reads.1 > man/sand_uncompress_reads.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/sge_submit_workers.m4 > man/sge_submit_workers.1
gzip < man/sge_submit_workers.1 > man/sge_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/split_fasta.m4 > man/split_fasta.1
gzip < man/split_fasta.1 > man/split_fasta.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/starch.m4 > man/starch.1
gzip < man/starch.1 > man/starch.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/torque_submit_workers.m4 > man/torque_submit_workers.1
gzip < man/torque_submit_workers.1 > man/torque_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/wavefront_master.m4 > man/wavefront_master.1
gzip < man/wavefront_master.1 > man/wavefront_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/weaver.m4 > man/weaver.1
gzip < man/weaver.1 > man/weaver.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_factory.m4 > man/work_queue_factory.1
gzip < man/work_queue_factory.1 > man/work_queue_factory.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_graph_log.m4 > man/work_queue_graph_log.1
gzip < man/work_queue_graph_log.1 > man/work_queue_graph_log.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_pool.m4 > man/work_queue_pool.1
gzip < man/work_queue_pool.1 > man/work_queue_pool.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_status.m4 > man/work_queue_status.1
gzip < man/work_queue_status.1 > man/work_queue_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="7.0.0 " -DCCTOOLS_RELEASE_DATE="" man/work_queue_worker.m4 > man/work_queue_worker.1
gzip < man/work_queue_worker.1 > man/work_queue_worker.1.gz
rm man/parrot_md5.1 man/parrot_cp.1 man/resource_monitor.1 man/makeflow_viz.1 man/makeflow_ec2_setup.1 man/parrot_setacl.1 man/makeflow_ec2_cleanup.1 man/sand_filter_master.1 man/work_queue_status.1 man/disk_allocator.1 man/parrot_lsalloc.1 man/split_fasta.1 man/sand_align_kernel.1 man/chroot_package_run.1 man/makeflow_monitor.1 man/parrot_mkalloc.1 man/makeflow_blast.1 man/weaver.1 man/catalog_query.1 man/confuga_adm.1 man/work_queue_graph_log.1 man/chirp_server.1 man/chirp_server_hdfs.1 man/allpairs_master.1 man/makeflow_status.1 man/parrot_timeout.1 man/maker_wq.1 man/chirp_put.1 man/wavefront_master.1 man/makeflow_amazon_batch_setup.1 man/catalog_server.1 man/chirp_distribute.1 man/pbs_submit_workers.1 man/allpairs_multicore.1 man/chirp_get.1 man/makeflow_amazon_batch_cleanup.1 man/parrot_whoami.1 man/sand_uncompress_reads.1 man/resource_monitor_visualizer.1 man/resource_monitor_histograms.1 man/confuga.1 man/parrot_locate.1 man/chirp_fuse.1 man/sand_filter_kernel.1 man/chirp_benchmark.1 man/sand_compress_reads.1 man/makeflow_graph_log.1 man/make_growfs.1 man/catalog_update.1 man/work_queue_factory.1 man/parrot_package_run.1 man/chirp_stream_files.1 man/condor_submit_workers.1 man/makeflow.1 man/starch.1 man/parrot_namespace.1 man/deltadb_query.1 man/torque_submit_workers.1 man/replica_exchange.1 man/chirp_status.1 man/work_queue_pool.1 man/parrot_run.1 man/parrot_package_create.1 man/parrot_getacl.1 man/makeflow_linker.1 man/sge_submit_workers.1 man/work_queue_worker.1 man/sand_align_master.1 man/makeflow_analyze.1 man/chirp.1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# disable the tests for now on upstream's request. they will be reenabled
# once the test suite can properly deal with the buildd environment
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem=makefile --with python2,python3
dh_testroot -a -O--buildsystem=makefile
dh_prep -a -O--buildsystem=makefile
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[4]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/apps'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[4]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[4]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[4]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[4]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[4]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[4]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[4]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp cctools_gpu_autodetect cctools_python catalog_update catalog_server watchdog disk_allocator jx2json jx2env catalog_query /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libdttools.a libforce_halt_enospc.so /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp auth.h auth_address.h auth_all.h auth_globus.h auth_hostname.h auth_kerberos.h auth_ticket.h auth_unix.h buffer.h category.h copy_tree.h debug.h hash_table.h histogram.h http_query.h int_sizes.h jx.h jx_match.h link.h md5.h rmonitor_poll.h rmsummary.h timestamp.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[4]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp work_queue_factory work_queue_pool /<<PKGBUILDDIR>>/debian/tmp/bin
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libbatch_job.a /<<PKGBUILDDIR>>/debian/tmp/lib
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp batch_job.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools
make[4]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 make_growfs
cp grow_fuse make_growfs /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 condor_submit_makeflow makeflow_graph_log makeflow_monitor starch makeflow_linker_perl_driver makeflow_linker_python_driver makeflow_archive_query mf_mesos_scheduler mf_mesos_executor mf_mesos_setting makeflow_ec2_setup makeflow_ec2_cleanup makeflow_amazon_batch_setup makeflow_amazon_batch_cleanup makeflow_lambda_setup makeflow_lambda_cleanup
cp makeflow makeflow_viz makeflow_analyze makeflow_linker makeflow_status condor_submit_makeflow makeflow_graph_log makeflow_monitor starch makeflow_linker_perl_driver makeflow_linker_python_driver makeflow_archive_query mf_mesos_scheduler mf_mesos_executor mf_mesos_setting makeflow_ec2_setup makeflow_ec2_cleanup makeflow_amazon_batch_setup makeflow_amazon_batch_cleanup makeflow_lambda_setup makeflow_lambda_cleanup /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/cctools/
cp style.xml /<<PKGBUILDDIR>>/debian/tmp/share/cctools/makeflow-cytoscape-style.xml
make[4]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp work_queue.pm work_queue.so /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Work_Queue
cp Work_Queue.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp Work_Queue/Task.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Work_Queue
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
chmod 755 work_queue_example.pl
cp work_queue_example.pl /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
chmod 755 work_queue_example.py
cp work_queue.py _work_queue.so /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python3.6/site-packages
cp work_queue.py _work_queue.so /<<PKGBUILDDIR>>/debian/tmp/lib/python3.6/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.py3 /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 work_queue_submit_common condor_submit_workers sge_submit_workers torque_submit_workers pbs_submit_workers slurm_submit_workers work_queue_graph_log
cp work_queue_worker work_queue_status work_queue_example work_queue_submit_common condor_submit_workers sge_submit_workers torque_submit_workers pbs_submit_workers slurm_submit_workers work_queue_graph_log /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libwork_queue.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.c /<<PKGBUILDDIR>>/debian/tmp/doc/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp work_queue.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/apps'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 makeflow_blast/makeflow_blast makeflow_bwa/makeflow_bwa makeflow_gatk/makeflow_gatk makeflow_blasr/makeflow_blasr wq_maker/wq_maker
cp makeflow_blast/makeflow_blast makeflow_bwa/makeflow_bwa makeflow_gatk/makeflow_gatk makeflow_blasr/makeflow_blasr wq_maker/wq_maker /<<PKGBUILDDIR>>/debian/tmp/bin/
make[3]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[4]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 sand_align_master sand_align_kernel sand_filter_master sand_filter_kernel sand_compress_reads sand_uncompress_reads sand_runCA_5.4 sand_runCA_6.1 sand_runCA_7.0
cp sand_align_master sand_align_kernel sand_filter_master sand_filter_kernel sand_compress_reads sand_uncompress_reads sand_runCA_5.4 sand_runCA_6.1 sand_runCA_7.0 /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[4]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp allpairs_multicore allpairs_master /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[4]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp wavefront wavefront_master /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libftp_lite.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp ftp_lite.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
chmod 755 ResourceMonitor.py
cp ResourceMonitor.py _cResourceMonitor.so cResourceMonitor.py /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp rmonitor_allocations_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp resource_monitor piggybacker rmonitor_poll_example rmonitor_snapshot resource_monitor_histograms /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp librmonitor_helper.so /<<PKGBUILDDIR>>/debian/tmp/lib/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp CChirp.pm CChirp.so /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
cp Chirp/Client.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
cp Chirp/Stat.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
chmod 755 chirp_perl_example.pl
cp chirp_perl_example.pl /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp Chirp.py _CChirp.so /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp chirp_python_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'install'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
if [ -f /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server ]; then mv /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server.old; fi
chmod 755 chirp_audit_cluster chirp_server_hdfs
cp chirp chirp_get chirp_put chirp_server chirp_status chirp_benchmark chirp_stream_files chirp_fuse chirp_distribute confuga_adm chirp_audit_cluster chirp_server_hdfs /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libchirp.a libconfuga.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp chirp_global.h chirp_multi.h chirp_reli.h chirp_client.h chirp_stream.h chirp_protocol.h chirp_matrix.h chirp_types.h chirp_recursive.h confuga.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/cctools/chirp/
cp -r ../tools/workflows/ /<<PKGBUILDDIR>>/debian/tmp/share/cctools/chirp/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[4]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp -r weaver /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp weaver.py /<<PKGBUILDDIR>>/debian/tmp/bin/weaver
make[4]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[4]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp umbrella /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
if [ -f umbrella_helper.html ]; then cp umbrella_helper.html /<<PKGBUILDDIR>>/debian/tmp/doc/; fi
make[4]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[4]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp deltadb_query /<<PKGBUILDDIR>>/debian/tmp/bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[4]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
#cp prune_server /<<PKGBUILDDIR>>/debian/tmp/bin/prune_server
mv prune_worker /<<PKGBUILDDIR>>/debian/tmp/bin/prune_worker
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/prune
cp -r prune/* /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/prune
make[4]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc/man
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc/images
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/man/man1
cp *.html manual.css /<<PKGBUILDDIR>>/debian/tmp/doc
if [ -f man/chirp.html ]; then cp man/*.html /<<PKGBUILDDIR>>/debian/tmp/doc/man; fi
if [ -f man/chirp.1.gz ]; then cp man/*.1.gz /<<PKGBUILDDIR>>/debian/tmp/share/man/man1; fi
if [ -d api ]; then cp -rp api /<<PKGBUILDDIR>>/debian/tmp/doc; fi
if [ -d images ]; then cp images/* /<<PKGBUILDDIR>>/debian/tmp/doc/images; fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
for file in cygwin1.dll cyggcc_s-1.dll cygintl-8.dll cygreadline7.dll cygncursesw-10.dll cygiconv-2.dll cygattr-1.dll sh.exe ; do if [ -f /bin/$file ] ; then cp /bin/$file /<<PKGBUILDDIR>>/debian/tmp/bin/ ; fi ; done
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/etc
cp config.mk /<<PKGBUILDDIR>>/debian/tmp/etc/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp COPYING /<<PKGBUILDDIR>>/debian/tmp/doc/
cp README /<<PKGBUILDDIR>>/debian/tmp/doc/
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
# make extensions for other supported python versions
if [ -n "" ]; then \
for pyver in ; do \
CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wno-unused-result" TWOTOTHREE=/usr/bin/2to3-2.7 PYTHON3=/usr/bin/python${pyver} ./configure.rerun ; \
make -B -C work_queue/src/python3 install CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp ; \
done ; \
fi
# for now remove the 'apps' scripts till upstream confirms that the language
# extension can be removed
rm -f debian/tmp/bin/*.py
# fix permissions
find debian/tmp/lib -name '*.py' -exec chmod 644 {} \;
# remove undesired pieces
rm debian/tmp/doc/COPYING
# upstream says it should not go into the page
rm debian/tmp/bin/watchdog
# HDFS helpers are useless without HDFS in Debian
rm debian/tmp/bin/*_hdfs
# newer doxygen puts jquery copy
#-rm debian/tmp/doc/api/html/jquery.js
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a -O--buildsystem=makefile
dh_installdocs -a -O--buildsystem=makefile
dh_installchangelogs -a -O--buildsystem=makefile
dh_installman -a -O--buildsystem=makefile
dh_python2 -a -O--buildsystem=makefile
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_python3 -a -O--buildsystem=makefile
I: dh_python3 fs:85: renaming debian/python3-workqueue/usr/lib/python3.6/site-packages/_work_queue.so to debian/python3-workqueue/usr/lib/python3.6/site-packages/_work_queue.cpython-36m-arm-linux-gnueabihf.so
dh_perl -a -O--buildsystem=makefile
dh_link -a -O--buildsystem=makefile
dh_strip_nondeterminism -a -O--buildsystem=makefile
dh_compress -a -O--buildsystem=makefile
dh_fixperms -a -O--buildsystem=makefile
dh_missing -a -O--buildsystem=makefile
dh_strip -a -O--buildsystem=makefile
dh_makeshlibs -a -O--buildsystem=makefile
dh_shlibdeps -a -O--buildsystem=makefile
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libncurses.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libtinfo.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libhistory.so.7 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=makefile
dh_gencontrol -a -O--buildsystem=makefile
dpkg-gencontrol: warning: Depends field of package coop-computing-tools-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package coop-computing-tools: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package coop-computing-tools: unused substitution variable ${perl:Depends}
dh_md5sums -a -O--buildsystem=makefile
dh_builddeb -a -O--buildsystem=makefile
dpkg-deb: building package 'python-workqueue-dbgsym' in '../python-workqueue-dbgsym_7.0.0-1_armhf.deb'.
dpkg-deb: building package 'coop-computing-tools-dev' in '../coop-computing-tools-dev_7.0.0-1_armhf.deb'.
dpkg-deb: building package 'python3-workqueue-dbgsym' in '../python3-workqueue-dbgsym_7.0.0-1_armhf.deb'.
dpkg-deb: building package 'coop-computing-tools' in '../coop-computing-tools_7.0.0-1_armhf.deb'.
dpkg-deb: building package 'python3-workqueue' in '../python3-workqueue_7.0.0-1_armhf.deb'.
dpkg-deb: building package 'python-workqueue' in '../python-workqueue_7.0.0-1_armhf.deb'.
dpkg-deb: building package 'coop-computing-tools-dbgsym' in '../coop-computing-tools-dbgsym_7.0.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../cctools_7.0.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build cctools-7.0.0
dpkg-source: info: using options from cctools-7.0.0/debian/source/options: --extend-diff-ignore=\.orig$ --compression=xz
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-07-14T06:11:41Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
cctools_7.0.0-1_armhf.changes:
------------------------------
Format: 1.8
Date: Mon, 09 Jul 2018 09:22:21 +0100
Source: cctools
Binary: coop-computing-tools coop-computing-tools-dev coop-computing-tools-doc python-workqueue python3-workqueue
Architecture: armhf
Version: 7.0.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Alastair McKinstry <mckinstry@debian.org>
Description:
coop-computing-tools - cooperative computing tools
coop-computing-tools-dev - libraries and header files for coop-computing-tools
coop-computing-tools-doc - documentation for coop-computing-tools
python-workqueue - cooperative computing tools work queue Python bindings
python3-workqueue - cooperative computing tools work queue Python3 bindings
Changes:
cctools (7.0.0-1) unstable; urgency=medium
.
* New upstream release
Checksums-Sha1:
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Files:
425212ffc788f1bae164dfee00e65805 10522 utils optional cctools_7.0.0-1_armhf.buildinfo
d64074443b14dca50a4638b8eeaba385 9593784 debug optional coop-computing-tools-dbgsym_7.0.0-1_armhf.deb
aa3876e839bc6eba6e2697a492203197 384072 libs optional coop-computing-tools-dev_7.0.0-1_armhf.deb
aa59b93bf38e7bde4d1e0a8affd3b213 1317076 utils optional coop-computing-tools_7.0.0-1_armhf.deb
ace768268d0902bc8af0d5bad081a878 1093880 debug optional python-workqueue-dbgsym_7.0.0-1_armhf.deb
80582594adb49f7127bef8610285464a 316884 python optional python-workqueue_7.0.0-1_armhf.deb
e1bf49ca60c0615bce79ded7a11d9197 524440 debug optional python3-workqueue-dbgsym_7.0.0-1_armhf.deb
1489fa0cb07efefbfd72617527e3d06e 170940 python optional python3-workqueue_7.0.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
coop-computing-tools-dbgsym_7.0.0-1_armhf.deb
---------------------------------------------
new Debian package, version 2.0.
size 9593784 bytes: control archive=2440 bytes.
2061 bytes, 12 lines control
4452 bytes, 42 lines md5sums
Package: coop-computing-tools-dbgsym
Source: cctools
Version: 7.0.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 11361
Depends: coop-computing-tools (= 7.0.0-1)
Section: debug
Priority: optional
Description: debug symbols for coop-computing-tools
Build-Ids: 04910059bcd6f27b7de69f1eae14ab3f28e7e687 05b42e8dde849b7777a72b48f48c599e3b5be24b 05c5bbe60139f3cca91efd0a82d03fa2c44c1e25 09b0b1f8327434e5613f30c0df9b927b26191914 0b7b43c5083882d7c9bce19dc143f4cf0b3461a4 1028a108f455c250628db139ca3aea2ef98059c6 160e34c6e487d38e9015657d49814e1ce278fcff 16b0ae98dd4bc49e9eab968766354df088fb261b 20662c1ceecaa353d36b1993cc152686a6d1b4ce 2af151b8b5c2ddbccce9189ee97c0b5a0c4ce79b 3e4678100d5421bc538158a29c9d5d566483975e 402bb1a0f12f79b6b5328453b71e2215d09fadd6 4301ffa7ea398c7ece84bb265e7af229f144e48d 44517a4eb11c3c0a7fdc55de65b487114bec9176 56a0830c49c8c462f8071c3436c4ece3740c58cb 591bdcf2bcdee3a3a171bf3e0f572ea34438b6a0 5f28d25851f7f3458a6fd4f7ebcfa80be07fb191 61d7d0a4c6f33e54a4c6508d1d9b599982f4c65c 662a23800c1834300bfbf4ddb741aabb88e19505 6a10c5343e162d45b6a6abe39c7c3b0ffeb75248 6a194be329199b251c33e7fc6a6a5a30cf5510d1 6f1b7bb78ba233cdd0ae8225195ff20fbf7961e6 81a6d4ddf52776701b1fb4a7fe07e93a86e10efa 85fd2c860a038944302e286a267e850a53173793 92a299f13007da94ef301cbe729928fdbf466e4b 9d0b21a45bf451394ace088e504f86a4f59b2396 9ec37bc84ac975f6d4f908246c4379d93ff28e59 af1790470bc29ac248b15704e379f40b008226f1 b159a2e81f0e4f8cc59e4846a0e2fb1f02615fbf b1cf28183b3d0bf75698ff0a084eb6e5b298d03e b4894ecc18d17a4cfc14f8c3116befcb25219680 b5af38f813302295f82b72ead56b3be0a5cb98c2 b8ebbf747358fd0a91611785b13118f5bd9a769d bc359a211c16d6aa0632756a5d73c4cfa1c7f42a becdbe04917c3de4f60bd7a694197d01e2e1931c c300f27478e35c88b015da6909a4d85e4fc78831 c4c7c7b447e57f767669fb392782bac64426c1cc ce6d6b86ac54e0224a29b48dacdbfe6fc01bbaea d3e30d312b372e0f5ca2b9616b1cc15f5c3f8a72 e165fe8d09e93b8422aebf5462ad24e24c641958 f5f8d12ef47599322a3eb819651af89d9562563f f95acef18730901f24d54871d70121d3a8454a91
drwxr-xr-x root/root 0 2018-07-09 08:22 ./
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/debug/.build-id/04/
-rw-r--r-- root/root 198808 2018-07-09 08:22 ./usr/lib/debug/.build-id/04/910059bcd6f27b7de69f1eae14ab3f28e7e687.debug
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/debug/.build-id/05/
-rw-r--r-- root/root 817252 2018-07-09 08:22 ./usr/lib/debug/.build-id/05/b42e8dde849b7777a72b48f48c599e3b5be24b.debug
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lrwxrwxrwx root/root 0 2018-07-09 08:22 ./usr/share/doc/coop-computing-tools-dbgsym -> coop-computing-tools
coop-computing-tools-dev_7.0.0-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 384072 bytes: control archive=1812 bytes.
525 bytes, 14 lines control
2900 bytes, 44 lines md5sums
Package: coop-computing-tools-dev
Source: cctools
Version: 7.0.0-1
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 1874
Section: libs
Priority: optional
Homepage: https://ccl.cse.nd.edu/software/
Description: libraries and header files for coop-computing-tools
These tools are a collection of software that help users to share resources in
a complex, heterogeneous, and unreliable computing environment.
.
This package provides static libraries and header files for development.
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coop-computing-tools_7.0.0-1_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 1317076 bytes: control archive=5156 bytes.
1912 bytes, 34 lines control
10290 bytes, 155 lines md5sums
Package: coop-computing-tools
Source: cctools
Version: 7.0.0-1
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 10608
Depends: libc6 (>= 2.6), libfuse2 (>= 2.8), libglobus-common0 (>= 17), libglobus-gss-assist3 (>= 11), libglobus-gssapi-gsi4 (>= 13), libgomp1 (>= 4.2.1), libncurses6 (>= 6), libreadline7 (>= 6.0), libsqlite3-0 (>= 3.7.15), libtinfo6 (>= 6), zlib1g (>= 1:1.2.0), python:any, python
Suggests: coop-computing-tools-doc, condor, gridengine-client
Section: utils
Priority: optional
Homepage: https://ccl.cse.nd.edu/software/
Description: cooperative computing tools
This is a collection of software that help users to share resources in a
complex, heterogeneous, and unreliable computing environment. This includes:
.
* Chirp: A personal filesystem and I/O protocol that allows unprivileged users
to share space securely, efficiently, and conveniently. When combined
with Parrot, Chirp allows users to create custom wide-area
distributed filesystems.
* Parrot: A transparent user-level virtual filesystem that allows any ordinary
program to be attached to a remote storage device such as an FTP
server or a Chirp server.
* Makeflow: A workflow system for parallel and distributed computing that uses
a language very similar to Make.
* Work Queue: A system and API for building master-worker style programs that
scale up to thousands of processors.
* All Pairs: A computational abstraction for running very large Cartesian
products.
* Wavefront: A computational abstraction for running very large dynamic
programming problems.
* The Fault Tolerant Shell: A high-level programming language that allows
users to combine the ease of shell scripting, the power of distributed
programming, and the precision of compiled languages. Basically,
parallel programming and exception handling for scripts.
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python-workqueue-dbgsym_7.0.0-1_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 1093880 bytes: control archive=648 bytes.
449 bytes, 12 lines control
318 bytes, 3 lines md5sums
Package: python-workqueue-dbgsym
Source: cctools
Version: 7.0.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 1288
Depends: python-workqueue (= 7.0.0-1)
Section: debug
Priority: optional
Description: debug symbols for python-workqueue
Build-Ids: 1cc002b36ddf83309b3813a46cc649a4273745e9 21d2cc7da0a6cf80b128366cae335fafc22b2ad9 4ea17d5700efe204ec8c0e0d6d419ccfd54bee0f
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drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/debug/
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drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-07-09 08:22 ./usr/share/doc/python-workqueue-dbgsym -> python-workqueue
python-workqueue_7.0.0-1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 316884 bytes: control archive=2016 bytes.
688 bytes, 14 lines control
3329 bytes, 40 lines md5sums
166 bytes, 9 lines * postinst #!/bin/sh
271 bytes, 14 lines * prerm #!/bin/sh
Package: python-workqueue
Source: cctools
Version: 7.0.0-1
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 1784
Depends: libc6 (>= 2.4), libglobus-common0 (>= 17), libglobus-gss-assist3 (>= 11), libglobus-gssapi-gsi4 (>= 13), zlib1g (>= 1:1.2.0), python (<< 2.8), python (>= 2.7), python:any (>= 2.6.6-7~)
Section: python
Priority: optional
Homepage: https://ccl.cse.nd.edu/software/
Description: cooperative computing tools work queue Python bindings
CCTools's Work Queue is a system and API for building master-worker style
programs that scale up to thousands of processors. This package provides
bindings to access this system from Python.
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drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/share/doc/python-workqueue/
-rw-r--r-- root/root 2910 2018-07-09 08:22 ./usr/share/doc/python-workqueue/changelog.Debian.gz
-rw-r--r-- root/root 2574 2018-07-09 08:22 ./usr/share/doc/python-workqueue/copyright
python3-workqueue-dbgsym_7.0.0-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 524440 bytes: control archive=532 bytes.
369 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-workqueue-dbgsym
Source: cctools
Version: 7.0.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 617
Depends: python3-workqueue (= 7.0.0-1)
Section: debug
Priority: optional
Description: debug symbols for python3-workqueue
Build-Ids: 1753cfd29e70248eedbd882523fba0269965eb46
drwxr-xr-x root/root 0 2018-07-09 08:22 ./
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/debug/.build-id/17/
-rw-r--r-- root/root 620712 2018-07-09 08:22 ./usr/lib/debug/.build-id/17/53cfd29e70248eedbd882523fba0269965eb46.debug
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/share/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-07-09 08:22 ./usr/share/doc/python3-workqueue-dbgsym -> python3-workqueue
python3-workqueue_7.0.0-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 170940 bytes: control archive=1136 bytes.
630 bytes, 14 lines control
351 bytes, 4 lines md5sums
169 bytes, 9 lines * postinst #!/bin/sh
409 bytes, 12 lines * prerm #!/bin/sh
Package: python3-workqueue
Source: cctools
Version: 7.0.0-1
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 793
Depends: libc6 (>= 2.4), libpython3.6 (>= 3.6.5), zlib1g (>= 1:1.2.0), python3 (<< 3.7), python3 (>= 3.6~), python3:any (>= 3.3.2-2~)
Section: python
Priority: optional
Homepage: https://ccl.cse.nd.edu/software/
Description: cooperative computing tools work queue Python3 bindings
CCTools's Work Queue is a system and API for building master-worker style
programs that scale up to thousands of processors. This package provides
bindings to access this system from Python3.
drwxr-xr-x root/root 0 2018-07-09 08:22 ./
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/python3/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/lib/python3/dist-packages/
-rw-r--r-- root/root 621936 2018-07-09 08:22 ./usr/lib/python3/dist-packages/_work_queue.cpython-36m-arm-linux-gnueabihf.so
-rw-r--r-- root/root 171372 2018-07-09 08:22 ./usr/lib/python3/dist-packages/work_queue.py
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/share/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-07-09 08:22 ./usr/share/doc/python3-workqueue/
-rw-r--r-- root/root 2910 2018-07-09 08:22 ./usr/share/doc/python3-workqueue/changelog.Debian.gz
-rw-r--r-- root/root 2574 2018-07-09 08:22 ./usr/share/doc/python3-workqueue/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 218676
Build-Time: 307
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 670
Job: cctools_7.0.0-1
Machine Architecture: armhf
Package: cctools
Package-Time: 1007
Source-Version: 7.0.0-1
Space: 218676
Status: successful
Version: 7.0.0-1
--------------------------------------------------------------------------------
Finished at 2018-07-14T06:11:41Z
Build needed 00:16:47, 218676k disk space