Build log for cctools (6.2.9-6) on armhf

cctools → 6.2.9-6 → armhf → 2018-06-20 05:25:34

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| cctools 6.2.9-6 (armhf)                      Wed, 20 Jun 2018 05:05:54 +0000 |
+==============================================================================+

Package: cctools
Version: 6.2.9-6
Source Version: 6.2.9-6
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-2e1f795a-ba1a-4e0f-ad7f-2eb48ff7c5ba' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
Fetched 23.4 MB in 11s (2120 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'cctools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org:/neurodebian-team/cctools.git
Please use:
git clone https://salsa.debian.org:/neurodebian-team/cctools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 12.8 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main cctools 6.2.9-6 (dsc) [2472 B]
Get:2 http://172.17.0.1/private buster-staging/main cctools 6.2.9-6 (tar) [12.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main cctools 6.2.9-6 (diff) [11.9 kB]
Fetched 12.8 MB in 10s (1284 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/cctools-cb8wgG/cctools-6.2.9' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/cctools-cb8wgG' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3UqSs6/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3UqSs6/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3UqSs6/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (11.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
  libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
  systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 61 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15727 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), python-all-dev (>= 2.6.6-3~), python3-all-dev, libglobus-common-dev, default-libmysqlclient-dev, libfuse-dev, libperl-dev, libkrb5-dev, libsqlite3-dev, pkg-config, libglobus-gss-assist-dev, net-tools, doxygen, libreadline6-dev | libreadline-dev, libncurses5-dev | libncurses-dev, swig, m4, mpi-default-dev
Filtered Build-Depends: debhelper (>= 10), python-all-dev (>= 2.6.6-3~), python3-all-dev, libglobus-common-dev, default-libmysqlclient-dev, libfuse-dev, libperl-dev, libkrb5-dev, libsqlite3-dev, pkg-config, libglobus-gss-assist-dev, net-tools, doxygen, libreadline6-dev, libncurses5-dev, swig, m4, mpi-default-dev
dpkg-deb: building package 'sbuild-build-depends-cctools-dummy' in '/<<BUILDDIR>>/resolver-3UqSs6/apt_archive/sbuild-build-depends-cctools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-cctools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ Sources [631 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ Packages [704 B]
Fetched 2668 B in 0s (14.5 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install cctools build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
  libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils comerr-dev cpp-7
  debhelper default-libmysqlclient-dev dh-autoreconf dh-python
  dh-strip-nondeterminism doxygen dwz file g++-7 gcc-7 gcc-7-base gettext
  gettext-base groff-base ibverbs-providers intltool-debian krb5-multidev
  libarchive-zip-perl libasan4 libbsd0 libcilkrts5 libclang1-6.0 libcroco3
  libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6
  libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libfuse-dev
  libfuse2 libgcc-7-dev libgfortran4 libglib2.0-0 libglobus-callout-dev
  libglobus-callout0 libglobus-common-dev libglobus-common0
  libglobus-gsi-callback-dev libglobus-gsi-callback0
  libglobus-gsi-cert-utils-dev libglobus-gsi-cert-utils0
  libglobus-gsi-credential-dev libglobus-gsi-credential1
  libglobus-gsi-openssl-error-dev libglobus-gsi-openssl-error0
  libglobus-gsi-proxy-core-dev libglobus-gsi-proxy-core0
  libglobus-gsi-proxy-ssl-dev libglobus-gsi-proxy-ssl1
  libglobus-gsi-sysconfig-dev libglobus-gsi-sysconfig1
  libglobus-gss-assist-dev libglobus-gss-assist3 libglobus-gssapi-gsi-dev
  libglobus-gssapi-gsi4 libglobus-openssl-module-dev libglobus-openssl-module0
  libgraphite2-3 libgssapi-krb5-2 libgssrpc4 libharfbuzz0b libhwloc-dev
  libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-le-hb0 libicu60
  libisl19 libk5crypto3 libkadm5clnt-mit11 libkadm5srv-mit11 libkdb5-9
  libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 libllvm6.0 libltdl-dev
  libltdl7 libmagic-mgc libmagic1 libmariadbclient-dev
  libmariadbclient-dev-compat libmariadbclient18 libmpdec2 libncurses-dev
  libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi3 libpciaccess0
  libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl-dev libperl5.26
  libpipeline1 libpmix2 libpython-all-dev libpython-dev libpython-stdlib
  libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev
  libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal
  libpython3.6-stdlib libreadline-dev libreadline7 libselinux1 libselinux1-dev
  libsepol1 libsepol1-dev libsigsegv2 libsqlite3-0 libsqlite3-dev libssl-dev
  libssl1.0.2 libstdc++-7-dev libtimedate-perl libtool libubsan0 libxapian30
  libxml2 m4 man-db mime-support mpi-default-dev mysql-common net-tools
  ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client perl perl-base
  perl-modules-5.26 pkg-config po-debconf python python-all python-all-dev
  python-dev python-minimal python2 python2-dev python2-minimal python2.7
  python2.7-dev python2.7-minimal python3 python3-all python3-all-dev
  python3-dev python3-distutils python3-lib2to3 python3-minimal python3.6
  python3.6-dev python3.6-minimal swig swig3.0 zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation doc-base gcc-7-locales dh-make doxygen-latex doxygen-doc
  doxygen-gui graphviz gcc-7-doc libstdc++6-7-dbg libgcc1-dbg libgomp1-dbg
  libitm1-dbg libatomic1-dbg libasan4-dbg liblsan0-dbg libtsan0-dbg
  libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg gettext-doc
  libasprintf-dev libgettextpo-dev groff krb5-doc fuse krb5-user
  libhwloc-contrib-plugins libtool-doc ncurses-doc openmpi-doc pciutils
  readline-doc sqlite3-doc libssl-doc libstdc++-7-doc gfortran
  | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser
  opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass perl-doc
  libterm-readline-gnu-perl | libterm-readline-perl-perl libmail-box-perl
  python-doc python-tk python2-doc python2.7-doc binfmt-support python3-doc
  python3-tk python3-venv python3.6-venv python3.6-doc swig-doc swig-examples
  swig3.0-examples swig3.0-doc
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libglobus-callout-doc libglobus-common-doc
  libglobus-gsi-callback-doc libglobus-gsi-cert-utils-doc
  libglobus-gsi-credential-doc libglobus-gsi-openssl-error-doc
  libglobus-gsi-proxy-core-doc libglobus-gsi-proxy-ssl-doc
  libglobus-gsi-sysconfig-doc libglobus-gss-assist-doc
  libglobus-gssapi-gsi-doc libglobus-openssl-module-doc krb5-locales xauth
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils comerr-dev debhelper
  default-libmysqlclient-dev dh-autoreconf dh-python dh-strip-nondeterminism
  doxygen dwz file gettext gettext-base groff-base ibverbs-providers
  intltool-debian krb5-multidev libarchive-zip-perl libbsd0 libclang1-6.0
  libcroco3 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6
  libevent-pthreads-2.1-6 libexpat1-dev libfile-stripnondeterminism-perl
  libfreetype6 libfuse-dev libfuse2 libgfortran4 libglib2.0-0
  libglobus-callout-dev libglobus-callout0 libglobus-common-dev
  libglobus-common0 libglobus-gsi-callback-dev libglobus-gsi-callback0
  libglobus-gsi-cert-utils-dev libglobus-gsi-cert-utils0
  libglobus-gsi-credential-dev libglobus-gsi-credential1
  libglobus-gsi-openssl-error-dev libglobus-gsi-openssl-error0
  libglobus-gsi-proxy-core-dev libglobus-gsi-proxy-core0
  libglobus-gsi-proxy-ssl-dev libglobus-gsi-proxy-ssl1
  libglobus-gsi-sysconfig-dev libglobus-gsi-sysconfig1
  libglobus-gss-assist-dev libglobus-gss-assist3 libglobus-gssapi-gsi-dev
  libglobus-gssapi-gsi4 libglobus-openssl-module-dev libglobus-openssl-module0
  libgraphite2-3 libgssapi-krb5-2 libgssrpc4 libharfbuzz0b libhwloc-dev
  libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-le-hb0 libicu60
  libisl19 libk5crypto3 libkadm5clnt-mit11 libkadm5srv-mit11 libkdb5-9
  libkeyutils1 libkrb5-3 libkrb5-dev libkrb5support0 libllvm6.0 libltdl-dev
  libltdl7 libmagic-mgc libmagic1 libmariadbclient-dev
  libmariadbclient-dev-compat libmariadbclient18 libmpdec2 libncurses-dev
  libnl-3-200 libnl-route-3-200 libopenmpi-dev libopenmpi3 libpciaccess0
  libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1
  libpmix2 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
  libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
  libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
  libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
  libreadline-dev libselinux1-dev libsepol1-dev libsigsegv2 libsqlite3-dev
  libssl-dev libssl1.0.2 libtimedate-perl libtool libxapian30 libxml2 m4
  man-db mime-support mpi-default-dev mysql-common net-tools
  ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
  po-debconf python python-all python-all-dev python-dev python-minimal
  python2 python2-dev python2-minimal python2.7 python2.7-dev
  python2.7-minimal python3 python3-all python3-all-dev python3-dev
  python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-dev
  python3.6-minimal sbuild-build-depends-cctools-dummy swig swig3.0 zlib1g-dev
The following packages will be upgraded:
  cpp-7 g++-7 gcc-7 gcc-7-base libasan4 libcilkrts5 libgcc-7-dev libperl5.26
  libreadline7 libselinux1 libsepol1 libsqlite3-0 libstdc++-7-dev libubsan0
  perl perl-base perl-modules-5.26
17 upgraded, 166 newly installed, 0 to remove and 44 not upgraded.
Need to get 171 MB/173 MB of archives.
After this operation, 386 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3UqSs6/apt_archive ./ sbuild-build-depends-cctools-dummy 0.invalid.0 [992 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libperl5.26 armhf 5.26.2-6 [2890 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf perl armhf 5.26.2-6 [202 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf perl-base armhf 5.26.2-6 [1243 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf perl-modules-5.26 all 5.26.2-6 [2824 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-1 [393 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-1 [1077 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libreadline7 armhf 7.0-5 [130 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libsqlite3-0 armhf 3.24.0-1 [521 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-1 [1841 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-1 [298 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6~rc1-1 [565 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6~rc1-1 [1384 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6~rc1-1 [1637 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6~rc1-1 [234 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libselinux1 armhf 2.8-1 [77.0 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libsepol1 armhf 2.8-1 [221 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libisl19 armhf 0.19-1 [427 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf g++-7 armhf 7.3.0-19 [5593 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf gcc-7 armhf 7.3.0-19 [5488 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf cpp-7 armhf 7.3.0-19 [5139 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libasan4 armhf 7.3.0-19 [301 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libubsan0 armhf 7.3.0-19 [106 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libcilkrts5 armhf 7.3.0-19 [35.2 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libstdc++-7-dev armhf 7.3.0-19 [1506 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libgcc-7-dev armhf 7.3.0-19 [671 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf gcc-7-base armhf 7.3.0-19 [187 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2o-1 [888 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf net-tools armhf 1.60+git20161116.90da8a0-2 [221 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20180525-1 [70.6 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [156 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf openssh-client armhf 1:7.7p1-2 [672 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf comerr-dev armhf 2.1-1.44.2-1 [37.7 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.4 [160 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.7.6-1+b1 [799 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.2 [994 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.29-6+b1 [1528 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.29-6+b1 [27.6 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:80 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180326 [93.2 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libllvm6.0 armhf 1:6.0-3+rpi1 [12.5 MB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libclang1-6.0 armhf 1:6.0-3+rpi1 [5734 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libxapian30 armhf 1.4.5-1 [940 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf doxygen armhf 1.8.13-10 [3257 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 18.1-1 [42.7 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf ibverbs-providers armhf 18.1-1 [19.7 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libgssrpc4 armhf 1.16-2 [82.2 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libkdb5-9 armhf 1.16-2 [67.3 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libkadm5srv-mit11 armhf 1.16-2 [77.7 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libkadm5clnt-mit11 armhf 1.16-2 [68.3 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf krb5-multidev armhf 1.16-2 [155 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [117 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libfuse2 armhf 2.9.7-1 [114 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libsepol1-dev armhf 2.8-1 [309 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libselinux1-dev armhf 2.8-1 [156 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libfuse-dev armhf 2.9.7-1 [144 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2.1 [386 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libglobus-common0 armhf 17.4-1 [86.2 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libglobus-callout0 armhf 3.15-2 [9838 B]
Get:108 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2.1 [158 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libglobus-common-dev armhf 17.4-1 [50.0 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libglobus-callout-dev armhf 3.15-2 [5622 B]
Get:111 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-openssl-error0 armhf 3.8-2 [8190 B]
Get:112 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-ssl1 armhf 5.10-2 [7680 B]
Get:113 http://172.17.0.1/private buster-staging/main armhf libglobus-openssl-module0 armhf 4.8-2 [5916 B]
Get:114 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-cert-utils0 armhf 9.16-2 [10.8 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-sysconfig1 armhf 8.1-1 [20.1 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-callback0 armhf 5.13-2 [25.5 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libssl-dev armhf 1.1.0h-4 [1376 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-ssl-dev armhf 5.10-2 [6240 B]
Get:119 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-openssl-error-dev armhf 3.8-2 [5214 B]
Get:120 http://172.17.0.1/private buster-staging/main armhf libglobus-openssl-module-dev armhf 4.8-2 [4578 B]
Get:121 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-cert-utils-dev armhf 9.16-2 [6644 B]
Get:122 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-sysconfig-dev armhf 8.1-1 [7696 B]
Get:123 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-callback-dev armhf 5.13-2 [6352 B]
Get:124 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-credential1 armhf 7.14-1 [24.4 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-credential-dev armhf 7.14-1 [7008 B]
Get:126 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-core0 armhf 8.6-2 [25.4 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-core-dev armhf 8.6-2 [6866 B]
Get:128 http://172.17.0.1/private buster-staging/main armhf libglobus-gssapi-gsi4 armhf 13.6-1 [51.6 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libglobus-gss-assist3 armhf 11.1-1 [21.8 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libglobus-gssapi-gsi-dev armhf 13.6-1 [12.0 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libglobus-gss-assist-dev armhf 11.1-1 [7776 B]
Get:132 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.10-1+rpi1 [85.7 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.10-1+rpi1 [141 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.10-1+rpi1 [15.4 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 18.1-1 [99.4 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf libkrb5-dev armhf 1.16-2 [46.8 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20180210-4 [278 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf libpmix2 armhf 2.1.1-2 [285 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf libopenmpi3 armhf 3.1.0-6+rpi1 [1787 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf openmpi-common all 3.1.0-6+rpi1 [159 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf openmpi-bin armhf 3.1.0-6+rpi1 [199 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 3.1.0-6+rpi1 [936 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf libperl-dev armhf 5.26.2-6 [2637 kB]
Get:145 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-1 [886 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-1 [27.6 MB]
Get:147 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:150 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.6~rc1-1 [1185 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.6~rc1-1 [43.7 MB]
Get:152 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.6.5-3 [19.7 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.6.5-3 [1064 B]
Get:154 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.24.0-1 [655 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf mpi-default-dev armhf 1.13 [5476 B]
Get:157 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:158 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-1 [289 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:160 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:161 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.15-3 [1068 B]
Get:162 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.5-4 [79.0 kB]
Get:163 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.5-4 [144 kB]
Get:164 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.6.5-3 [1064 B]
Get:165 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.6~rc1-1 [508 kB]
Get:166 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.6.5-3 [1268 B]
Get:167 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.6.5-3 [1064 B]
Get:168 http://172.17.0.1/private buster-staging/main armhf swig3.0 armhf 3.0.12-1.1 [1225 kB]
Get:169 http://172.17.0.1/private buster-staging/main armhf swig armhf 3.0.12-1.1 [310 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libsepol1-dev:armhf (2.8-1) ...
Setting up libxapian30:armhf (1.4.5-1) ...
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Setting up perl-modules-5.26 (5.26.2-6) ...
Setting up m4 (1.4.18-1) ...
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Setting up dwz (0.12-2) ...
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Setting up libpciaccess0:armhf (0.14-1) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
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Setting up openssh-client (1:7.7p1-2) ...
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Setting up python3-all-dev (3.6.5-3) ...
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Setting up libglobus-openssl-module-dev:armhf (4.8-2) ...
Setting up python-all-dev (2.7.15-3) ...
Setting up libkadm5srv-mit11:armhf (1.16-2) ...
Setting up libkadm5clnt-mit11:armhf (1.16-2) ...
Setting up libglobus-gsi-proxy-core0:armhf (8.6-2) ...
Setting up libglobus-gsi-cert-utils-dev:armhf (9.16-2) ...
Setting up libglobus-gsi-sysconfig-dev:armhf (8.1-1) ...
Setting up krb5-multidev:armhf (1.16-2) ...
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Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
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Setting up libhwloc-plugins (1.11.10-1+rpi1) ...
Setting up libllvm6.0:armhf (1:6.0-3+rpi1) ...
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Setting up libclang1-6.0:armhf (1:6.0-3+rpi1) ...
Setting up libpmix2:armhf (2.1.1-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libopenmpi3:armhf (3.1.0-6+rpi1) ...
Setting up po-debconf (1.0.20) ...
Setting up doxygen (1.8.13-10) ...
Setting up openmpi-bin (3.1.0-6+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: error: no alternatives for mpi
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up debhelper (11.3.2) ...
Setting up dh-autoreconf (19) ...
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up mpi-default-dev (1.13) ...
Setting up sbuild-build-depends-cctools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-15+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-3+rpi1 linux-libc-dev_4.16.5-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-2+b1 binutils_2.30-15+rpi1 binutils-arm-linux-gnueabihf_2.30-15+rpi1 binutils-common_2.30-15+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.4+b1 bzip2_1.0.6-8.1 ca-certificates_20170717 comerr-dev_2.1-1.44.2-1 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dbus_1.12.8-2 dbus-user-session_1.12.8-2 debconf_1.5.66 debhelper_11.3.2 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-python_3.20180326 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1+b4 doxygen_1.8.13-10 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.31.1-0.5 file_1:5.33-3 findutils_4.6.0+git+20171230-2 g++_4:7.2.0-1d1 g++-7_7.3.0-19 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-3+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 ibverbs-providers_18.1-1 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 krb5-multidev_1.16-2 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-3+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-15+rpi1 libblkid1_2.32-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-3+rpi1 libcilkrts5_7.3.0-19 libclang1-6.0_1:6.0-3+rpi1 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-2 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.91-2+rpi1 libdrm2_2.4.91-2+rpi1 libedit2_3.1-20180525-1 libelf1_0.170-0.4 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libfuse-dev_2.9.7-1 libfuse2_2.9.7-1 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-3+rpi1 libgcrypt20_1.8.2-2 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-19 libglib2.0-0_2.56.1-2 libglobus-callout-dev_3.15-2 libglobus-callout0_3.15-2 libglobus-common-dev_17.4-1 libglobus-common0_17.4-1 libglobus-gsi-callback-dev_5.13-2 libglobus-gsi-callback0_5.13-2 libglobus-gsi-cert-utils-dev_9.16-2 libglobus-gsi-cert-utils0_9.16-2 libglobus-gsi-credential-dev_7.14-1 libglobus-gsi-credential1_7.14-1 libglobus-gsi-openssl-error-dev_3.8-2 libglobus-gsi-openssl-error0_3.8-2 libglobus-gsi-proxy-core-dev_8.6-2 libglobus-gsi-proxy-core0_8.6-2 libglobus-gsi-proxy-ssl-dev_5.10-2 libglobus-gsi-proxy-ssl1_5.10-2 libglobus-gsi-sysconfig-dev_8.1-1 libglobus-gsi-sysconfig1_8.1-1 libglobus-gss-assist-dev_11.1-1 libglobus-gss-assist3_11.1-1 libglobus-gssapi-gsi-dev_13.6-1 libglobus-gssapi-gsi4_13.6-1 libglobus-openssl-module-dev_4.8-2 libglobus-openssl-module0_4.8-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-3+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libgssapi-krb5-2_1.16-2 libgssrpc4_1.16-2 libharfbuzz0b_1.7.6-1+b1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1+rpi1 libhwloc-plugins_1.11.10-1+rpi1 libhwloc5_1.11.10-1+rpi1 libibverbs-dev_18.1-1 libibverbs1_18.1-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-4 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2 libkadm5clnt-mit11_1.16-2 libkadm5srv-mit11_1.16-2 libkdb5-9_1.16-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5-dev_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 libllvm6.0_1:6.0-3+rpi1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmariadbclient-dev_1:10.1.29-6+b1 libmariadbclient-dev-compat_1:10.1.29-6+b1 libmariadbclient18_1:10.1.29-6+b1 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20180210-4 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.5-3 libnss-systemd_238-4 libopenmpi-dev_3.1.0-6+rpi1 libopenmpi3_3.1.0-6+rpi1 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpciaccess0_0.14-1 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl-dev_5.26.2-6 libperl5.24_5.24.1-7 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpmix2_2.1.1-2 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-1 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-1 libpython2.7-dev_2.7.15-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libpython3-all-dev_3.6.5-3 libpython3-dev_3.6.5-3 libpython3-stdlib_3.6.5-3 libpython3.6_3.6.6~rc1-1 libpython3.6-dev_3.6.6~rc1-1 libpython3.6-minimal_3.6.6~rc1-1 libpython3.6-stdlib_3.6.6~rc1-1 libreadline-dev_7.0-5 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libselinux1-dev_2.8-1 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.8-1 libsepol1-dev_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libsqlite3-dev_3.24.0-1 libss2_1.44.2-1 libssl-dev_1.1.0h-4 libssl1.0.2_1.0.2o-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-3+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libxapian30_1.4.5-1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.5-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mime-support_3.60 mount_2.32-0.1 mpi-default-dev_1.13 multiarch-support_2.27-3+rpi1 mysql-common_5.8+1.0.4 nano_2.9.5-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1-1 net-tools_1.60+git20161116.90da8a0-2 netbase_5.4 ocl-icd-libopencl1_2.2.12-1 openmpi-bin_3.1.0-6+rpi1 openmpi-common_3.1.0-6+rpi1 openssh-client_1:7.7p1-2 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-1 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-1 python2.7-dev_2.7.15-1 python2.7-minimal_2.7.15-1 python3_3.6.5-3 python3-all_3.6.5-3 python3-all-dev_3.6.5-3 python3-dev_3.6.5-3 python3-distutils_3.6.5-4 python3-lib2to3_3.6.5-4 python3-minimal_3.6.5-3 python3.6_3.6.6~rc1-1 python3.6-dev_3.6.6~rc1-1 python3.6-minimal_3.6.6~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-cctools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 swig_3.0.12-1.1 swig3.0_3.0.12-1.1 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_238-4 util-linux_2.31.1-0.5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Jun 15 08:48:36 2018 UTC
gpgv:                using RSA key 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./cctools_6.2.9-6.dsc
dpkg-source: info: extracting cctools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking cctools_6.2.9.orig.tar.gz
dpkg-source: info: unpacking cctools_6.2.9-6.debian.tar.xz
dpkg-source: info: applying sys_openat.patch
dpkg-source: info: applying hurd
dpkg-source: info: applying debian_configure
dpkg-source: info: applying disable_doxygen
dpkg-source: info: applying 2to3
dpkg-source: info: applying rm-sqlite
dpkg-source: info: applying 64-bit.patch
dpkg-source: info: applying multiarch_configure

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-2e1f795a-ba1a-4e0f-ad7f-2eb48ff7c5ba
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package cctools
dpkg-buildpackage: info: source version 6.2.9-6
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build cctools-6.2.9
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from cctools-6.2.9/debian/source/options: --extend-diff-ignore=\.orig$
 fakeroot debian/rules clean
dh clean --buildsystem=makefile --with python2,python3
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
[ -e Makefile.config ] && dh_auto_clean || true
rm Makefile.config configure.rerun
rm: cannot remove 'Makefile.config': No such file or directory
rm: cannot remove 'configure.rerun': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
rm -rf api hdfs-setup.template python/python-workqueue/setup.cfg
# remove testrun left-overs
rm dttools/src/microbench dttools/src/work_queue_example
rm: cannot remove 'dttools/src/microbench': No such file or directory
rm: cannot remove 'dttools/src/work_queue_example': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
find /<<PKGBUILDDIR>> -name '*.test.log' -delete
find /<<PKGBUILDDIR>> -name '*_test' -delete
rm -rf sand/test/filter_verification/random.cand.filter.tmp/
rm -rf sand/test/test_20.cand.filter.tmp/
rm -f sand/test/test_20.cand sand/test/test_20.cfa sand/test/*.log
rm -rf makeflow/test/input/ makeflow/test/worker.pid
rm -rf makeflow/test/dirs/testcase.subdir.01.makeflow.makeflowlog
rm -rf makeflow/test/dirs/testcase.subdir.01.makeflow.wqlog
rm -rf makeflow/test/src/
rm dttools/src/multirun sand/test/banded.log
rm: cannot remove 'dttools/src/multirun': No such file or directory
rm: cannot remove 'sand/test/banded.log': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
rm .configure.tmp.o
rm: cannot remove '.configure.tmp.o': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean -O--buildsystem=makefile
 debian/rules build-arch
dh build-arch --buildsystem=makefile --with python2,python3
   dh_update_autotools_config -a -O--buildsystem=makefile
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# disable warning about unused results (necessary because warning is error
# is ON)
CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wno-unused-result" ./configure --with-globus-path /usr \
	--with-krb5-path /usr --with-readline-path /usr \
	--with-mpi-path /usr --with-fuse-path /usr --with-zlib-path /usr \
	--with-python-path /usr
Linux mb-lxc-02 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:04:12 UTC 2018 armv8l GNU/Linux
ignoring unknown package /usr
ignoring unknown package /usr
checking for gcc.../usr/bin/gcc
checking for g++.../usr/bin/g++
checking for GNU make in several places...
checking for make.../usr/bin/make
checking if make is GNU make...yes
checking if gcc supports -Wno-unused-parameter...yes
checking if gcc supports -Wno-unknown-pragmas...yes
checking if gcc supports -Wno-deprecated-declarations...yes
checking if gcc supports -Wno-unused-const-variable...yes
checking if ld supports the --as-needed flag...yes
arm-linux-gnueabihf
using a globus flavor of 'gcc32' (if this is wrong, use the --globus-flavor argument)
checking for /usr/include/gcc32/globus_common.h...no
checking for /usr/include/globus/globus_common.h...yes
checking for /usr/lib/libglobus_gss_assist.so...no
checking for /usr/lib/libglobus_gss_assist.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gss_assist.so...yes
checking for /usr/lib/libglobus_gssapi_gsi.so...no
checking for /usr/lib/libglobus_gssapi_gsi.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gssapi_gsi.so...yes
checking for /usr/lib/libglobus_gsi_proxy_core.so...no
checking for /usr/lib/libglobus_gsi_proxy_core.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_proxy_core.so...yes
checking for /usr/lib/libglobus_gsi_credential.so...no
checking for /usr/lib/libglobus_gsi_credential.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_credential.so...yes
checking for /usr/lib/libglobus_gsi_callback.so...no
checking for /usr/lib/libglobus_gsi_callback.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_callback.so...yes
checking for /usr/lib/libglobus_oldgaa.so...no
checking for /usr/lib/libglobus_oldgaa.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_oldgaa.so...yes
checking for /usr/lib/libglobus_gsi_sysconfig.so...no
checking for /usr/lib/libglobus_gsi_sysconfig.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_sysconfig.so...yes
checking for /usr/lib/libglobus_gsi_cert_utils.so...no
checking for /usr/lib/libglobus_gsi_cert_utils.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_cert_utils.so...yes
checking for /usr/lib/libglobus_openssl.so...no
checking for /usr/lib/libglobus_openssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_openssl.so...yes
checking for /usr/lib/libglobus_openssl_error.so...no
checking for /usr/lib/libglobus_openssl_error.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_openssl_error.so...yes
checking for /usr/lib/libglobus_callout.so...no
checking for /usr/lib/libglobus_callout.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_callout.so...yes
checking for /usr/lib/libglobus_proxy_ssl.so...no
checking for /usr/lib/libglobus_proxy_ssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_proxy_ssl.so...yes
checking for /usr/lib/libglobus_common.so...no
checking for /usr/lib/libglobus_common.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_common.so...yes
checking for /usr/lib/libltdl.so...no
checking for /usr/lib/libltdl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libltdl.so...yes
*** skipping irods support
checking for /usr/lib/libmysqlclient.so...no
checking for /usr/lib/libmysqlclient.a...no
checking for /usr/lib/arm-linux-gnueabihf/libmysqlclient.so...yes
*** skipping xrootd support
*** skipping cvmfs support
checking for /usr/lib/libfuse.so...no
checking for /usr/lib/libfuse.a...no
checking for /usr/lib/arm-linux-gnueabihf/libfuse.so...yes
checking for /usr/lib/libreadline.so...no
checking for /usr/lib/libreadline.a...no
checking for /usr/lib/arm-linux-gnueabihf/libreadline.so...yes
checking for /usr/bin/perl...yes
perl version is 5.26.2
checking for /usr/bin/python2...yes
python version is 2.7.15
checking for /usr/include/python2.7/Python.h...yes
found python development libraries
python version is suitable for umbrella
python version is suitable for prune
python version is suitable for weaver
checking for /usr/bin/python3...yes
checking for /usr/bin/2to3-2.7...yes
python3 version is 3.6.6rc1
checking for /usr/include/python3.6m/Python.h...yes
checking for /usr/bin/python3-config...yes
found python3 development libraries
checking for /usr/bin/swig...yes
checking for /usr/lib/libssl.so...no
checking for /usr/lib/libssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libssl.so...yes
checking for /usr/lib/libcrypto.so...no
checking for /usr/lib/libcrypto.a...no
checking for /usr/lib/arm-linux-gnueabihf/libcrypto.so...yes
checking for /usr/lib/libresolv.so...no
checking for /usr/lib/libresolv.a...no
checking for /usr/lib/arm-linux-gnueabihf/libresolv.so...yes
checking for /usr/lib/libsocket.so...no
checking for /usr/lib/libsocket.a...no
checking for /usr/lib/arm-linux-gnueabihf/libsocket.so...no
checking for /usr/lib/arm-linux-gnueabihf/libsocket.a...no
checking for /usr/lib/libnsl.so...no
checking for /usr/lib/libnsl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libnsl.so...yes
checking for /usr/lib/libz.so...no
checking for /usr/lib/libz.a...no
checking for /usr/lib/arm-linux-gnueabihf/libz.so...yes
checking for gmtime_r in /usr/include/time.h...yes
checking for fdatasync in /usr/include/unistd.h...yes
checking for isnan in /usr/include/math.h...yes
checking for localtime_r in /usr/include/time.h...yes
checking for localtime_s in /usr/include/time.h...no
checking for localtime_s in /usr/include/arm-linux-gnueabihf/time.h...no
checking for openat in /usr/include/fcntl.h...yes
checking for pread in /usr/include/unistd.h...yes
checking for pread64 in /usr/include/unistd.h...yes
checking for pwrite in /usr/include/unistd.h...yes
checking for pwrite64 in /usr/include/unistd.h...yes
checking for strchrnul in /usr/include/string.h...yes
checking for strsignal in /usr/include/string.h...yes
checking for usleep in /usr/include/unistd.h...yes
checking for utime in /usr/include/utime.h...yes
checking for utimensat in /usr/include/sys/stat.h...no
checking for utimensat in /usr/include/arm-linux-gnueabihf/sys/stat.h...yes
checking for header attr/xattr.h...no
checking for header sys/xattr.h...yes
checking for header ifaddrs.h...yes
checking for header inttypes.h...yes
checking for header stdint.h...yes
checking for header sys/statfs.h...yes
checking for header sys/statvfs.h...yes
checking for header syslog.h...yes
checking for doxygen.../usr/bin/doxygen
checking for m4.../usr/bin/m4
checking for nroff.../usr/bin/nroff
checking for package compatibility...
parrot is NOT supported on LINUX ARMHF
resource_monitor IS supported on LINUX
checking for all the things I know how to build...
package dttools found
package batch_job found
package grow found
package makeflow found
package work_queue found
package apps found
package sand found
package allpairs found
package wavefront found
package ftp_lite found
package resource_monitor found
package chirp found
package weaver found
package umbrella found
package deltadb found
package prune found
package doc found
Creating config.mk...

To re-configure, type './configure.rerun'
To build, type 'make'
To build and install, type 'make install'

make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a -O--buildsystem=makefile
	make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
COMPILE address.o
COMPILE auth.o
COMPILE auth_address.o
COMPILE auth_all.o
COMPILE auth_globus.o
COMPILE auth_hostname.o
COMPILE auth_kerberos.o
COMPILE auth_ticket.o
COMPILE auth_unix.o
COMPILE b64.o
COMPILE bitmap.o
COMPILE buffer.o
COMPILE catalog_query.o
COMPILE category.o
COMPILE cctools.o
COMPILE change_process_title.o
COMPILE chunk.o
COMPILE clean_dir.o
COMPILE compat-at.o
COMPILE console_login.o
COMPILE copy_stream.o
COMPILE copy_tree.o
COMPILE create_dir.o
COMPILE daemon.o
COMPILE datagram.o
COMPILE debug.o
COMPILE debug_file.o
COMPILE debug_journal.o
COMPILE debug_stream.o
COMPILE debug_syslog.o
COMPILE disk_alloc.o
COMPILE domain_name.o
COMPILE domain_name_cache.o
COMPILE dpopen.o
COMPILE elfheader.o
elfheader.c: In function 'elf_interp':
elfheader.c:135:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
   case ELFCLASS32: {
                    ^
elfheader.c:172:3: note: here
   case ELFCLASS64: {
   ^~~~
elfheader.c:172:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
   case ELFCLASS64: {
                    ^
elfheader.c:209:3: note: here
   default:
   ^~~~~~~
COMPILE envtools.o
COMPILE fast_popen.o
COMPILE fd.o
COMPILE file_cache.o
COMPILE full_io.o
COMPILE get_canonical_path.o
COMPILE get_line.o
COMPILE getopt.o
COMPILE getopt_aux.o
COMPILE gpu_info.o
COMPILE hash_cache.o
COMPILE hash_table.o
hash_table.c: In function 'jenkins_hash':
hash_table.c:339:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   c += ((ub4) k[10] << 24);
   ~~^~~~~~~~~~~~~~~~~~~~~~
hash_table.c:340:2: note: here
  case 10:
  ^~~~
hash_table.c:341:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   c += ((ub4) k[9] << 16);
   ~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:342:2: note: here
  case 9:
  ^~~~
hash_table.c:343:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   c += ((ub4) k[8] << 8);
   ~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:345:2: note: here
  case 8:
  ^~~~
hash_table.c:346:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   b += ((ub4) k[7] << 24);
   ~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:347:2: note: here
  case 7:
  ^~~~
hash_table.c:348:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   b += ((ub4) k[6] << 16);
   ~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:349:2: note: here
  case 6:
  ^~~~
hash_table.c:350:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   b += ((ub4) k[5] << 8);
   ~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:351:2: note: here
  case 5:
  ^~~~
hash_table.c:352:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   b += k[4];
   ~~^~~~~~~
hash_table.c:353:2: note: here
  case 4:
  ^~~~
hash_table.c:354:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   a += ((ub4) k[3] << 24);
   ~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:355:2: note: here
  case 3:
  ^~~~
hash_table.c:356:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   a += ((ub4) k[2] << 16);
   ~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:357:2: note: here
  case 2:
  ^~~~
hash_table.c:358:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   a += ((ub4) k[1] << 8);
   ~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:359:2: note: here
  case 1:
  ^~~~
COMPILE hdfs_library.o
COMPILE histogram.o
COMPILE hmac.o
COMPILE host_disk_info.o
COMPILE host_memory_info.o
COMPILE http_query.o
COMPILE interfaces_address.o
COMPILE itable.o
COMPILE json.o
json.c: In function 'new_value':
json.c:140:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
             value->_reserved.object_mem = (*(char **) &value->u.object.values) + values_size;
             ^~~~~
json.c: In function 'json_parse_ex':
json.c:368:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
                         (*(json_char **) &top->u.object.values) += string_length + 1;
                         ^
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
    case '\n': ++ cur_line;  cur_line_begin = i; \
                             ~~~~~~~~~~~~~~~^~~
json.c:263:16: note: in expansion of macro 'whitespace'
                whitespace:
                ^~~~~~~~~~
json.c:187:4: note: here
    case ' ': case '\t': case '\r'
    ^
json.c:263:16: note: in expansion of macro 'whitespace'
                whitespace:
                ^~~~~~~~~~
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
    case '\n': ++ cur_line;  cur_line_begin = i; \
                             ~~~~~~~~~~~~~~~^~~
json.c:395:16: note: in expansion of macro 'whitespace'
                whitespace:
                ^~~~~~~~~~
json.c:187:4: note: here
    case ' ': case '\t': case '\r'
    ^
json.c:395:16: note: in expansion of macro 'whitespace'
                whitespace:
                ^~~~~~~~~~
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
    case '\n': ++ cur_line;  cur_line_begin = i; \
                             ~~~~~~~~~~~~~~~^~~
json.c:558:19: note: in expansion of macro 'whitespace'
                   whitespace:
                   ^~~~~~~~~~
json.c:187:4: note: here
    case ' ': case '\t': case '\r'
    ^
json.c:558:19: note: in expansion of macro 'whitespace'
                   whitespace:
                   ^~~~~~~~~~
json.c:583:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
                      if (flags & flag_need_comma)
                         ^
json.c:589:19: note: here
                   default:
                   ^~~~~~~
json.c:190:39: warning: 'string_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
    do { if (!state.first_pass) string [string_length] = b;  ++ string_length; } while (0);
                                       ^
json.c:244:20: note: 'string_length' was declared here
       unsigned int string_length;
                    ^~~~~~~~~~~~~
json.c:319:35: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized]
                            string [string_length ++] = 0x80 | (uc_b2 & 0x3F);
                                   ^
json.c:627:48: warning: 'num_fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
                   num_fraction = (num_fraction * 10) + (b - '0');
                                  ~~~~~~~~~~~~~~^~~~~
json.c:619:40: warning: 'num_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
                         num_e = (num_e * 10) + (b - '0');
                                 ~~~~~~~^~~~~
json.c:666:63: warning: 'num_digits' may be used uninitialized in this function [-Wmaybe-uninitialized]
                      top->u.dbl += ((double) num_fraction) / (pow (10, (double) num_digits));
                                                              ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE json_aux.o
COMPILE jx.o
jx.c: In function 'jx_copy':
jx.c:584:10: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized]
  c->line = j->line;
  ~~~~~~~~^~~~~~~~~
COMPILE jx_database.o
COMPILE jx_match.o
COMPILE jx_parse.o
COMPILE jx_print.o
COMPILE jx_pretty_print.o
COMPILE jx_table.o
COMPILE jx_export.o
COMPILE jx_eval.o
COMPILE jx_function.o
COMPILE link.o
COMPILE link_auth.o
COMPILE list.o
COMPILE load_average.o
COMPILE md5.o
COMPILE memfdexe.o
COMPILE mergesort.o
COMPILE mkdir_recursive.o
COMPILE twister.o
COMPILE nvpair.o
COMPILE nvpair_jx.o
COMPILE password_cache.o
COMPILE path.o
COMPILE path_disk_size_info.o
COMPILE pattern.o
In file included from pattern.c:30:0:
luapatt.c: In function 'match':
luapatt.c:311:16: warning: this statement may fall through [-Wimplicit-fallthrough=]
               s++;  /* 1 match already done */
               ~^~
luapatt.c:313:13: note: here
             case '*':  /* 0 or more repetitions */
             ^~~~
COMPILE preadwrite.o
COMPILE process.o
COMPILE random.o
COMPILE rmonitor.o
COMPILE rmonitor_poll.o
COMPILE rmsummary.o
COMPILE set.o
COMPILE sha1.o
COMPILE shell.o
COMPILE sigdef.o
COMPILE sleeptools.o
COMPILE sort_dir.o
COMPILE stats.o
COMPILE string_array.o
COMPILE stringtools.o
COMPILE text_array.o
COMPILE text_list.o
COMPILE timer.o
COMPILE timestamp.o
COMPILE unlink_recursive.o
COMPILE uptime.o
COMPILE url_encode.o
COMPILE username.o
COMPILE uuid.o
COMPILE xxmalloc.o
ar rv libdttools.a address.o auth.o auth_address.o auth_all.o auth_globus.o auth_hostname.o auth_kerberos.o auth_ticket.o auth_unix.o b64.o bitmap.o buffer.o catalog_query.o category.o cctools.o change_process_title.o chunk.o clean_dir.o compat-at.o console_login.o copy_stream.o copy_tree.o create_dir.o daemon.o datagram.o debug.o debug_file.o debug_journal.o debug_stream.o debug_syslog.o disk_alloc.o domain_name.o domain_name_cache.o dpopen.o elfheader.o envtools.o fast_popen.o fd.o file_cache.o full_io.o get_canonical_path.o get_line.o getopt.o getopt_aux.o gpu_info.o hash_cache.o hash_table.o hdfs_library.o histogram.o hmac.o host_disk_info.o host_memory_info.o http_query.o interfaces_address.o itable.o json.o json_aux.o jx.o jx_database.o jx_match.o jx_parse.o jx_print.o jx_pretty_print.o jx_table.o jx_export.o jx_eval.o jx_function.o link.o link_auth.o list.o load_average.o md5.o memfdexe.o mergesort.o mkdir_recursive.o twister.o nvpair.o nvpair_jx.o password_cache.o path.o path_disk_size_info.o pattern.o preadwrite.o process.o random.o rmonitor.o rmonitor_poll.o rmsummary.o set.o sha1.o shell.o sigdef.o sleeptools.o sort_dir.o stats.o string_array.o stringtools.o text_array.o text_list.o timer.o timestamp.o unlink_recursive.o uptime.o url_encode.o username.o uuid.o xxmalloc.o
ar: creating libdttools.a
a - address.o
a - auth.o
a - auth_address.o
a - auth_all.o
a - auth_globus.o
a - auth_hostname.o
a - auth_kerberos.o
a - auth_ticket.o
a - auth_unix.o
a - b64.o
a - bitmap.o
a - buffer.o
a - catalog_query.o
a - category.o
a - cctools.o
a - change_process_title.o
a - chunk.o
a - clean_dir.o
a - compat-at.o
a - console_login.o
a - copy_stream.o
a - copy_tree.o
a - create_dir.o
a - daemon.o
a - datagram.o
a - debug.o
a - debug_file.o
a - debug_journal.o
a - debug_stream.o
a - debug_syslog.o
a - disk_alloc.o
a - domain_name.o
a - domain_name_cache.o
a - dpopen.o
a - elfheader.o
a - envtools.o
a - fast_popen.o
a - fd.o
a - file_cache.o
a - full_io.o
a - get_canonical_path.o
a - get_line.o
a - getopt.o
a - getopt_aux.o
a - gpu_info.o
a - hash_cache.o
a - hash_table.o
a - hdfs_library.o
a - histogram.o
a - hmac.o
a - host_disk_info.o
a - host_memory_info.o
a - http_query.o
a - interfaces_address.o
a - itable.o
a - json.o
a - json_aux.o
a - jx.o
a - jx_database.o
a - jx_match.o
a - jx_parse.o
a - jx_print.o
a - jx_pretty_print.o
a - jx_table.o
a - jx_export.o
a - jx_eval.o
a - jx_function.o
a - link.o
a - link_auth.o
a - list.o
a - load_average.o
a - md5.o
a - memfdexe.o
a - mergesort.o
a - mkdir_recursive.o
a - twister.o
a - nvpair.o
a - nvpair_jx.o
a - password_cache.o
a - path.o
a - path_disk_size_info.o
a - pattern.o
a - preadwrite.o
a - process.o
a - random.o
a - rmonitor.o
a - rmonitor_poll.o
a - rmsummary.o
a - set.o
a - sha1.o
a - shell.o
a - sigdef.o
a - sleeptools.o
a - sort_dir.o
a - stats.o
a - string_array.o
a - stringtools.o
a - text_array.o
a - text_list.o
a - timer.o
a - timestamp.o
a - unlink_recursive.o
a - uptime.o
a - url_encode.o
a - username.o
a - uuid.o
a - xxmalloc.o
ranlib libdttools.a
COMPILE libforce_halt_enospc.o
COMPILE libforce_halt_enospc.so
COMPILE catalog_update.o
LINK catalog_update
COMPILE catalog_server.o
LINK catalog_server
COMPILE watchdog.o
LINK watchdog
COMPILE disk_allocator.o
LINK disk_allocator
COMPILE jx2json.o
LINK jx2json
COMPILE catalog_query_tool.o
LINK catalog_query
COMPILE auth_test.o
LINK auth_test
COMPILE disk_alloc_test.o
LINK disk_alloc_test
COMPILE jx_test.o
LINK jx_test
COMPILE microbench.o
LINK microbench
COMPILE multirun.o
LINK multirun
COMPILE jx_count_obj_test.o
LINK jx_count_obj_test
COMPILE histogram_test.o
LINK histogram_test
COMPILE category_test.o
LINK category_test
rm watchdog.o catalog_update.o category_test.o jx_test.o multirun.o histogram_test.o jx2json.o jx_count_obj_test.o disk_alloc_test.o disk_allocator.o catalog_server.o microbench.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
COMPILE chirp_tool.o
COMPILE chirp_global.o
COMPILE chirp_multi.o
chirp_multi.c: In function 'chirp_volume_open':
chirp_multi.c:110:23: warning: '/key' directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
  sprintf(filename, "%s/key", v->root);
                       ^~~~
chirp_multi.c:110:2: note: 'sprintf' output between 5 and 1028 bytes into a destination of size 1024
  sprintf(filename, "%s/key", v->root);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c:123:23: warning: '/hosts' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
  sprintf(filename, "%s/hosts", v->root);
                       ^~~~~~
chirp_multi.c:123:2: note: 'sprintf' output between 7 and 1030 bytes into a destination of size 1024
  sprintf(filename, "%s/hosts", v->root);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c: In function 'chirp_multi_create':
chirp_multi.c:289:25: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
    sprintf(keypath, "/%s", current_volume->key);
                         ^
chirp_multi.c:289:4: note: 'sprintf' output between 2 and 1025 bytes into a destination of size 1024
    sprintf(keypath, "/%s", current_volume->key);
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c:301:29: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
   sprintf(info.rpath, "%s/%s", current_volume->key, cookie);
                             ^
chirp_multi.c:301:3: note: 'sprintf' output 2 or more bytes (assuming 1025) into a destination of size 1024
   sprintf(info.rpath, "%s/%s", current_volume->key, cookie);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE chirp_recursive.o
COMPILE chirp_reli.o
COMPILE chirp_client.o
COMPILE chirp_matrix.o
COMPILE chirp_stream.o
COMPILE chirp_ticket.o
ar rv libchirp.a chirp_global.o chirp_multi.o chirp_recursive.o chirp_reli.o chirp_client.o chirp_matrix.o chirp_stream.o chirp_ticket.o
ar: creating libchirp.a
a - chirp_global.o
a - chirp_multi.o
a - chirp_recursive.o
a - chirp_reli.o
a - chirp_client.o
a - chirp_matrix.o
a - chirp_stream.o
a - chirp_ticket.o
ranlib libchirp.a
LINK chirp
COMPILE chirp_get.o
LINK chirp_get
COMPILE chirp_put.o
LINK chirp_put
COMPILE chirp_stats.o
COMPILE chirp_thirdput.o
COMPILE chirp_alloc.o
COMPILE chirp_audit.o
COMPILE chirp_acl.o
COMPILE chirp_group.o
COMPILE chirp_filesystem.o
COMPILE chirp_fs_hdfs.o
COMPILE chirp_fs_local.o
chirp_fs_local.c: In function 'chirp_fs_local_resolve':
chirp_fs_local.c:384:3: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized]
   close(fd);
   ^~~~~~~~~
COMPILE chirp_fs_local_scheduler.o
COMPILE chirp_fs_chirp.o
COMPILE chirp_fs_confuga.o
In file included from chirp_fs_confuga.c:9:0:
chirp_fs_confuga.c: In function 'chirp_fs_confuga_open':
/<<PKGBUILDDIR>>/dttools/src/catch.h:47:6: warning: this statement may fall through [-Wimplicit-fallthrough=]
   if (rc) {\
      ^
chirp_fs_confuga.c:188:4: note: in expansion of macro 'CATCH'
    CATCH(EINVAL);
    ^~~~~
chirp_fs_confuga.c:189:3: note: here
   default:
   ^~~~~~~
COMPILE chirp_job.o
COMPILE chirp_sqlite.o
COMPILE confuga.o
confuga.c: In function 'dbupgrade':
confuga.c:174:11: warning: this statement may fall through [-Wimplicit-fallthrough=]
   case 0: {
           ^
confuga.c:194:3: note: here
   case 1: {
   ^~~~
confuga.c:194:11: warning: this statement may fall through [-Wimplicit-fallthrough=]
   case 1: {
           ^
confuga.c:292:3: note: here
   default: {
   ^~~~~~~
COMPILE confuga_namespace.o
In file included from confuga_namespace.c:9:0:
confuga_namespace.c: In function 'resolve.isra.1':
/<<PKGBUILDDIR>>/dttools/src/catch.h:25:12: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized]
    PROTECT(close(fd));\
            ^~~~~
confuga_namespace.c:109:6: note: 'fd' was declared here
  int fd;
      ^~
COMPILE confuga_replica.o
In file included from /<<PKGBUILDDIR>>/dttools/src/catch.h:10:0,
                 from chirp_sqlite.h:11,
                 from confuga_replica.c:10:
confuga_replica.c: In function 'waitall':
/<<PKGBUILDDIR>>/dttools/src/debug.h:110:32: warning: 'id' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define debug                  cctools_debug
                                ^~~~~~~~~~~~~
confuga_replica.c:1109:17: note: 'id' was declared here
   chirp_jobid_t id;
                 ^~
confuga_replica.c: In function 'confugaR_replicate':
confuga_replica.c:229:54: warning: '/file/' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
  snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
                                                      ^~~~~~
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
  snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
                                                   ^~~~~~~~~~
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:2: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 4096
  snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
confuga_replica.c:252:51: warning: '/file/' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
   snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
                                                   ^~~~~~
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
   snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
                                                ^~~~~~~~~~
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:3: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 4096
   snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
confuga_replica.c:286:12: warning: 'size' may be used uninitialized in this function [-Wmaybe-uninitialized]
   sqlcatch(sqlite3_bind_int64(stmt, 4, size));
            ^~~~~~~~~~~~~~~~~~
confuga_replica.c:287:12: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
   sqlcatch(sqlite3_bind_int64(stmt, 5, start));
            ^~~~~~~~~~~~~~~~~~
confuga_replica.c: In function 'confuga_replica_open':
confuga_replica.c:347:51: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size 1024 [-Wformat-truncation=]
   snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
                                                   ^~
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
   snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
                                                  ^~~~~~~~~~
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:3: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 1024
   snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE confuga_node.o
COMPILE confuga_job.o
confuga_job.c: In function 'confugaJ_schedule':
confuga_job.c:577:11: warning: 'sid' may be used uninitialized in this function [-Wmaybe-uninitialized]
  sqlcatch(sqlite3_bind_int64(stmt, 2, sid));
           ^~~~~~~~~~~~~~~~~~
confuga_job.c:542:16: note: 'sid' was declared here
  confuga_sid_t sid;
                ^~~
COMPILE confuga_file.o
COMPILE confuga_gc.o
ar rv libconfuga.a confuga.o confuga_namespace.o confuga_replica.o confuga_node.o confuga_job.o confuga_file.o confuga_gc.o chirp_global.o chirp_multi.o chirp_recursive.o chirp_reli.o chirp_client.o chirp_matrix.o chirp_stream.o chirp_ticket.o chirp_sqlite.o
ar: creating libconfuga.a
a - confuga.o
a - confuga_namespace.o
a - confuga_replica.o
a - confuga_node.o
a - confuga_job.o
a - confuga_file.o
a - confuga_gc.o
a - chirp_global.o
a - chirp_multi.o
a - chirp_recursive.o
a - chirp_reli.o
a - chirp_client.o
a - chirp_matrix.o
a - chirp_stream.o
a - chirp_ticket.o
a - chirp_sqlite.o
ranlib libconfuga.a
COMPILE chirp_server.o
LINK chirp_server
COMPILE chirp_status.o
LINK chirp_status
COMPILE chirp_benchmark.o
LINK chirp_benchmark
COMPILE chirp_stream_files.o
LINK chirp_stream_files
COMPILE chirp_fuse.o
LINK chirp_fuse
COMPILE chirp_distribute.o
LINK chirp_distribute
COMPILE confuga_adm.o
LINK confuga_adm
COMPILE chirp_swig_wrap.o
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
SWIG chirp.i (perl5)
COMPILE chirp_wrap.o
LINK CChirp.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
SWIG chirp.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE chirp_wrap.o
LINK _CChirp.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
rm chirp_stream_files.o chirp_server.o chirp_get.o confuga_adm.o chirp_put.o chirp_benchmark.o chirp_distribute.o chirp_status.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[2]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
COMPILE work_queue.o
COMPILE work_queue_catalog.o
COMPILE work_queue_resources.o
ar rv libwork_queue.a work_queue.o work_queue_catalog.o work_queue_resources.o
ar: creating libwork_queue.a
a - work_queue.o
a - work_queue_catalog.o
a - work_queue_resources.o
ranlib libwork_queue.a
COMPILE work_queue_process.o
COMPILE work_queue_watcher.o
COMPILE work_queue_worker.o
work_queue_worker.c: In function 'do_thirdget':
work_queue_worker.c:1113:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   if(symlink(path, cached_filename) != 0) {
     ^
work_queue_worker.c:1117:2: note: here
  case WORK_QUEUE_FS_PATH:
  ^~~~
LINK work_queue_worker
COMPILE work_queue_status.o
LINK work_queue_status
COMPILE work_queue_example.o
LINK work_queue_example
COMPILE work_queue_test_main.o
COMPILE work_queue_test.o
LINK work_queue_test
COMPILE work_queue_test_watch.o
LINK work_queue_test_watch
COMPILE work_queue_priority_test.o
LINK work_queue_priority_test
sed -e "s/SGE_CUSTOM_PARAMETERS//" sge_submit_workers_common > sge_submit_workers
chmod 755 sge_submit_workers
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
SWIG work_queue.i (perl5)
COMPILE work_queue_wrap.o
LINK work_queue.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
SWIG work_queue.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE work_queue_wrap.o
LINK _work_queue.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
cp work_queue.binding.py work_queue.binding.py3
chmod 755 work_queue.binding.py3
/usr/bin/2to3-2.7 -w work_queue.binding.py3
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored work_queue.binding.py3
RefactoringTool: Files that were modified:
RefactoringTool: work_queue.binding.py3
--- work_queue.binding.py3	(original)
+++ work_queue.binding.py3	(refactored)
@@ -785,7 +785,7 @@
                 work_queue_specify_name(self._work_queue, name)
 
             work_queue_specify_master_mode(self._work_queue, catalog)
-        except Exception, e:
+        except Exception as e:
             raise Exception('Unable to create internal Work Queue structure: %s' % e)
 
     def __free_queue(self):
SWIG work_queue.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE work_queue_wrap.o
LINK _work_queue.so
cp work_queue_example.py work_queue_example.py3
chmod 755 work_queue_example.py3
/usr/bin/2to3-2.7 -w work_queue_example.py3
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored work_queue_example.py3
RefactoringTool: Files that were modified:
RefactoringTool: work_queue_example.py3
--- work_queue_example.py3	(original)
+++ work_queue_example.py3	(refactored)
@@ -19,8 +19,8 @@
   port = WORK_QUEUE_DEFAULT_PORT
 
   if len(sys.argv) < 2:
-    print "work_queue_example <file1> [file2] [file3] ..."
-    print "Each file given on the command line will be compressed using a remote worker."
+    print("work_queue_example <file1> [file2] [file3] ...")
+    print("Each file given on the command line will be compressed using a remote worker.")
     sys.exit(1)
 
   # Usually, we can execute the gzip utility by simply typing its name at a
@@ -33,7 +33,7 @@
   if not os.path.exists(gzip_path):
     gzip_path = "/usr/bin/gzip"
     if not os.path.exists(gzip_path):
-      print "gzip was not found. Please modify the gzip_path variable accordingly. To determine the location of gzip, from the terminal type: which gzip (usual locations are /bin/gzip and /usr/bin/gzip)"
+      print("gzip was not found. Please modify the gzip_path variable accordingly. To determine the location of gzip, from the terminal type: which gzip (usual locations are /bin/gzip and /usr/bin/gzip)")
       sys.exit(1);
 
   # We create the tasks queue using the default port. If this port is already
@@ -42,10 +42,10 @@
   try:
       q = WorkQueue(port)
   except:
-      print "Instantiation of Work Queue failed!"
+      print("Instantiation of Work Queue failed!")
       sys.exit(1)
 
-  print "listening on port %d..." % q.port
+  print("listening on port %d..." % q.port)
 
   # We create and dispatch a task for each filename given in the argument list
   for i in range(1, len(sys.argv)):
@@ -72,19 +72,19 @@
 
       # Once all files has been specified, we are ready to submit the task to the queue.
       taskid = q.submit(t)
-      print "submitted task (id# %d): %s" % (taskid, t.command)
+      print("submitted task (id# %d): %s" % (taskid, t.command))
 
-  print "waiting for tasks to complete..."
+  print("waiting for tasks to complete...")
   while not q.empty():
       t = q.wait(5)
       if t:
-          print "task (id# %d) complete: %s (return code %d)" % (t.id, t.command, t.return_status)
+          print("task (id# %d) complete: %s (return code %d)" % (t.id, t.command, t.return_status))
           if t.return_status != 0:
             # The task failed. Error handling (e.g., resubmit with new parameters, examine logs, etc.) here
             None
       #task object will be garbage collected by Python automatically when it goes out of scope
 
-  print "all tasks complete!"
+  print("all tasks complete!")
 
   #work queue object will be garbage collected by Python automatically when it goes out of scope
   sys.exit(0)
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
rm work_queue_priority_test.o work_queue_test_watch.o work_queue_test.o work_queue_status.o work_queue_example.o work_queue_worker.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[2]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
COMPILE batch_job.o
COMPILE batch_job_amazon.o
COMPILE batch_job_dryrun.o
COMPILE batch_job_chirp.o
COMPILE batch_job_cluster.o
COMPILE batch_job_blue_waters.o
COMPILE batch_job_condor.o
COMPILE batch_job_local.o
COMPILE batch_job_work_queue.o
COMPILE batch_job_mesos.o
COMPILE mesos_task.o
ar rv libbatch_job.a batch_job.o batch_job_amazon.o batch_job_dryrun.o batch_job_chirp.o batch_job_cluster.o batch_job_blue_waters.o batch_job_condor.o batch_job_local.o batch_job_work_queue.o batch_job_mesos.o mesos_task.o
ar: creating libbatch_job.a
a - batch_job.o
a - batch_job_amazon.o
a - batch_job_dryrun.o
a - batch_job_chirp.o
a - batch_job_cluster.o
a - batch_job_blue_waters.o
a - batch_job_condor.o
a - batch_job_local.o
a - batch_job_work_queue.o
a - batch_job_mesos.o
a - mesos_task.o
ranlib libbatch_job.a
COMPILE work_queue_factory.o
LINK work_queue_factory
cp work_queue_factory work_queue_pool
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[2]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
COMPILE grow.o
COMPILE grow_fuse.o
LINK grow_fuse
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[2]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
COMPILE dag.o
COMPILE dag_node.o
COMPILE dag_file.o
COMPILE dag_variable.o
COMPILE dag_visitors.o
COMPILE dag_resources.o
COMPILE lexer.o
COMPILE parser.o
In file included from parser.c:32:0:
parser.c: In function 'dag_from_file':
/<<PKGBUILDDIR>>/dttools/src/debug.h:110:32: warning: 'name' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define debug                  cctools_debug
                                ^~~~~~~~~~~~~
parser.c:880:14: note: 'name' was declared here
  const char *name;
              ^~~~
COMPILE parser_jx.o
COMPILE makeflow_summary.o
In file included from /<<PKGBUILDDIR>>/dttools/src/set.h:11:0,
                 from dag_node.h:12,
                 from dag.h:10,
                 from makeflow_summary.c:7:
makeflow_summary.c: In function 'makeflow_summary_create':
/<<PKGBUILDDIR>>/dttools/src/list.h:29:21: warning: 'fn' may be used uninitialized in this function [-Wmaybe-uninitialized]
 #define list_find   cctools_list_find
                     ^~~~~~~~~~~~~~~~~
makeflow_summary.c:74:14: note: 'fn' was declared here
  const char *fn;
              ^~
COMPILE makeflow_gc.o
COMPILE makeflow_log.o
COMPILE makeflow_wrapper.o
COMPILE makeflow_wrapper_monitor.o
COMPILE makeflow_wrapper_docker.o
COMPILE makeflow_wrapper_enforcement.o
COMPILE makeflow_catalog_reporter.o
COMPILE makeflow_wrapper_umbrella.o
COMPILE makeflow_mounts.o
makeflow_mounts.c: In function 'mount_install_local':
makeflow_mounts.c:107:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
   if(copy_symlink(source, cache_path)) {
     ^
makeflow_mounts.c:111:2: note: here
  case FILE_TYPE_DIR:
  ^~~~
COMPILE makeflow_wrapper_singularity.o
COMPILE makeflow_archive.o
COMPILE makeflow_local_resources.o
COMPILE makeflow.o
makeflow.c: In function 'main':
makeflow.c:1735:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
     if(!strcmp(optarg, "throughput")) {
       ^
makeflow.c:1744:4: note: here
    case LONG_OPT_JX:
    ^~~~
makeflow.c:1745:14: warning: this statement may fall through [-Wimplicit-fallthrough=]
     jx_input = 1;
     ~~~~~~~~~^~~
makeflow.c:1746:4: note: here
    case LONG_OPT_JSON:
    ^~~~
makeflow.c:1766:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
     makeflow_wrapper_umbrella_set_spec(umbrella, (const char *)xxstrdup(optarg));
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makeflow.c:1767:4: note: here
    case LONG_OPT_MESOS_MASTER:
    ^~~~
LINK makeflow
COMPILE makeflow_viz.o
LINK makeflow_viz
COMPILE makeflow_analyze.o
LINK makeflow_analyze
COMPILE makeflow_linker.o
makeflow_linker.c: In function 'find_dependencies_for':
makeflow_linker.c:255:37: warning: 'original_name' may be used uninitialized in this function [-Wmaybe-uninitialized]
       new_dependency->original_name = original_name;
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
LINK makeflow_linker
COMPILE makeflow_status.o
LINK makeflow_status
rm makeflow_analyze.o makeflow_linker.o makeflow_viz.o makeflow.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[2]: Entering directory '/<<PKGBUILDDIR>>/apps'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[2]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
COMPILE compressed_sequence.o
COMPILE sequence_filter.o
COMPILE sequence.o
COMPILE matrix.o
COMPILE overlap.o
COMPILE align.o
ar rv libsandtools.a compressed_sequence.o sequence_filter.o sequence.o matrix.o overlap.o align.o
ar: creating libsandtools.a
a - compressed_sequence.o
a - sequence_filter.o
a - sequence.o
a - matrix.o
a - overlap.o
a - align.o
ranlib libsandtools.a
COMPILE sand_align_master.o
LINK sand_align_master
COMPILE sand_align_kernel.o
LINK sand_align_kernel
COMPILE sand_filter_master.o
LINK sand_filter_master
COMPILE sand_filter_kernel.o
LINK sand_filter_kernel
COMPILE sand_compress_reads.o
LINK sand_compress_reads
COMPILE sand_uncompress_reads.o
LINK sand_uncompress_reads
rm sand_compress_reads.o sand_uncompress_reads.o sand_align_master.o sand_filter_master.o sand_align_kernel.o sand_filter_kernel.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[2]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
COMPILE allpairs_compare.o
COMPILE allpairs_multicore.o
LINK allpairs_multicore
COMPILE allpairs_master.o
allpairs_master.c: In function 'estimate_run_time':
allpairs_master.c:91:25: warning: 'stoptime' may be used uninitialized in this function [-Wmaybe-uninitialized]
  timestamp_t starttime, stoptime;
                         ^~~~~~~~
allpairs_master.c:123:57: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
  double t = (double)(stoptime - starttime) / (x * ystop + y + 1) / 1000000;
                                               ~~~~~~~~~~^~~
LINK allpairs_master
rm allpairs_master.o allpairs_multicore.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[2]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
COMPILE wavefront.o
LINK wavefront
COMPILE wavefront_master.o
LINK wavefront_master
rm wavefront_master.o wavefront.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[2]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
COMPILE ftp_lite.o
COMPILE error.o
COMPILE radix.o
radix.c: In function 'ftp_lite_radix_encode':
radix.c:62:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
   outbuf[j++] = pad;
   ~~~~~~~~~~~~^~~~~
radix.c:63:2: note: here
  case 2:
  ^~~~
COMPILE login.o
COMPILE network.o
ar rv libftp_lite.a ftp_lite.o error.o radix.o login.o network.o
ar: creating libftp_lite.a
a - ftp_lite.o
a - error.o
a - radix.o
a - login.o
a - network.o
ranlib libftp_lite.a
COMPILE ftp_lite_test.o
LINK ftp_lite_test
COMPILE ftp_lite_copy.o
LINK ftp_lite_copy
rm ftp_lite_test.o ftp_lite_copy.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[2]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
COMPILE rmonitor_helper.o
COMPILE rmonitor_helper_comm.o
COMPILE librmonitor_helper.so
COMPILE piggybacker.o
LINK piggybacker
./piggybacker rmonitor_piggyback.h librmonitor_helper.so
COMPILE resource_monitor.o
resource_monitor.c: In function 'rmonitor_handle_inotify':
resource_monitor.c:748:3: warning: 'evdata' may be used uninitialized in this function [-Wmaybe-uninitialized]
   free(evdata);
   ^~~~~~~~~~~~
resource_monitor.c:723:8: warning: 'finfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
     if (finfo == NULL) {
        ^
COMPILE rmonitor_file_watch.o
LINK resource_monitor
COMPILE rmonitor_poll_example.o
LINK rmonitor_poll_example
COMPILE rmonitor_snapshot.o
LINK rmonitor_snapshot
COMPILE resource_monitor_histograms.o
COMPILE resource_monitor_tools.o
LINK resource_monitor_histograms
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
SWIG rmonitor.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE rmonitor_wrap.o
LINK _cResourceMonitor.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[2]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
sed 's%CCTOOLS_VERSION%6.2.9 FINAL%' < weaver.in > weaver.py
chmod 755 weaver.py
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[2]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
sed 's%CCTOOLS_VERSION%6.2.9 FINAL%' < umbrella.py > umbrella
chmod 755 umbrella
# pydoc2/pydoc creates a html file, umbrella.html.
if which pydoc2; then pydoc2 -w umbrella; elif which pydoc; then pydoc -w umbrella; fi
/usr/bin/pydoc2
wrote umbrella.html
if [ -f umbrella.html ]; then mv umbrella.html umbrella_helper.html; fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[2]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
COMPILE deltadb_stream.o
COMPILE deltadb_reduction.o
deltadb_reduction.c: In function 'deltadb_reduction_value':
deltadb_reduction.c:91:9: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
  return value;
         ^~~~~
ar rv libdeltadb.a deltadb_stream.o deltadb_reduction.o
ar: creating libdeltadb.a
a - deltadb_stream.o
a - deltadb_reduction.o
ranlib libdeltadb.a
COMPILE deltadb_query.o
LINK deltadb_query
rm deltadb_query.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[2]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
sed 's%CCTOOLS_VERSION%6.2.9 FINAL%' < prune_worker.py | sed 's%CCTOOLS_RELEASE_DATE%%' > prune_worker
chmod 755 prune_worker
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
mkdir -p api/html
pod2html ../work_queue/src/perl/Work_Queue.pm > api/html/work_queue_perl.html
mkdir -p api/html
pod2html ../work_queue/src/perl/Work_Queue/Task.pm > api/html/work_queue_task_perl.html
mkdir -p api/html
pod2html ../chirp/src/perl/Chirp/Client.pm > api/html/chirp_client_perl.html
mkdir -p api/html
pod2html ../chirp/src/perl/Chirp/Stat.pm > api/html/chirp_stat_perl.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/allpairs_master.m4 > man/allpairs_master.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/allpairs_multicore.m4 > man/allpairs_multicore.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_query.m4 > man/catalog_query.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_server.m4 > man/catalog_server.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_update.m4 > man/catalog_update.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp.m4 > man/chirp.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_benchmark.m4 > man/chirp_benchmark.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_distribute.m4 > man/chirp_distribute.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_fuse.m4 > man/chirp_fuse.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_get.m4 > man/chirp_get.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_put.m4 > man/chirp_put.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_server.m4 > man/chirp_server.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_server_hdfs.m4 > man/chirp_server_hdfs.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_status.m4 > man/chirp_status.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_stream_files.m4 > man/chirp_stream_files.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chroot_package_run.m4 > man/chroot_package_run.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/condor_submit_workers.m4 > man/condor_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/confuga.m4 > man/confuga.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/confuga_adm.m4 > man/confuga_adm.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/deltadb_query.m4 > man/deltadb_query.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/disk_allocator.m4 > man/disk_allocator.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/make_growfs.m4 > man/make_growfs.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow.m4 > man/makeflow.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_analyze.m4 > man/makeflow_analyze.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_blast.m4 > man/makeflow_blast.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_cleanup.m4 > man/makeflow_ec2_cleanup.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_setup.m4 > man/makeflow_ec2_setup.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_graph_log.m4 > man/makeflow_graph_log.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_linker.m4 > man/makeflow_linker.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_monitor.m4 > man/makeflow_monitor.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_status.m4 > man/makeflow_status.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_viz.m4 > man/makeflow_viz.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/maker_wq.m4 > man/maker_wq.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_cp.m4 > man/parrot_cp.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_getacl.m4 > man/parrot_getacl.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_locate.m4 > man/parrot_locate.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_lsalloc.m4 > man/parrot_lsalloc.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_md5.m4 > man/parrot_md5.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_mkalloc.m4 > man/parrot_mkalloc.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_namespace.m4 > man/parrot_namespace.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_package_create.m4 > man/parrot_package_create.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_package_run.m4 > man/parrot_package_run.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_run.m4 > man/parrot_run.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_setacl.m4 > man/parrot_setacl.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_timeout.m4 > man/parrot_timeout.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_whoami.m4 > man/parrot_whoami.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/pbs_submit_workers.m4 > man/pbs_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/replica_exchange.m4 > man/replica_exchange.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor.m4 > man/resource_monitor.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_histograms.m4 > man/resource_monitor_histograms.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_visualizer.m4 > man/resource_monitor_visualizer.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_align_kernel.m4 > man/sand_align_kernel.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_align_master.m4 > man/sand_align_master.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_compress_reads.m4 > man/sand_compress_reads.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_filter_kernel.m4 > man/sand_filter_kernel.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_filter_master.m4 > man/sand_filter_master.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_uncompress_reads.m4 > man/sand_uncompress_reads.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sge_submit_workers.m4 > man/sge_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/split_fasta.m4 > man/split_fasta.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/starch.m4 > man/starch.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/torque_submit_workers.m4 > man/torque_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/wavefront_master.m4 > man/wavefront_master.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/weaver.m4 > man/weaver.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_factory.m4 > man/work_queue_factory.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_graph_log.m4 > man/work_queue_graph_log.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_pool.m4 > man/work_queue_pool.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_status.m4 > man/work_queue_status.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_worker.m4 > man/work_queue_worker.html
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/allpairs_master.m4 > man/allpairs_master.1
gzip < man/allpairs_master.1 > man/allpairs_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/allpairs_multicore.m4 > man/allpairs_multicore.1
gzip < man/allpairs_multicore.1 > man/allpairs_multicore.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_query.m4 > man/catalog_query.1
gzip < man/catalog_query.1 > man/catalog_query.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_server.m4 > man/catalog_server.1
gzip < man/catalog_server.1 > man/catalog_server.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_update.m4 > man/catalog_update.1
gzip < man/catalog_update.1 > man/catalog_update.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp.m4 > man/chirp.1
gzip < man/chirp.1 > man/chirp.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_benchmark.m4 > man/chirp_benchmark.1
gzip < man/chirp_benchmark.1 > man/chirp_benchmark.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_distribute.m4 > man/chirp_distribute.1
gzip < man/chirp_distribute.1 > man/chirp_distribute.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_fuse.m4 > man/chirp_fuse.1
gzip < man/chirp_fuse.1 > man/chirp_fuse.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_get.m4 > man/chirp_get.1
gzip < man/chirp_get.1 > man/chirp_get.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_put.m4 > man/chirp_put.1
gzip < man/chirp_put.1 > man/chirp_put.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_server.m4 > man/chirp_server.1
gzip < man/chirp_server.1 > man/chirp_server.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_server_hdfs.m4 > man/chirp_server_hdfs.1
gzip < man/chirp_server_hdfs.1 > man/chirp_server_hdfs.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_status.m4 > man/chirp_status.1
gzip < man/chirp_status.1 > man/chirp_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_stream_files.m4 > man/chirp_stream_files.1
gzip < man/chirp_stream_files.1 > man/chirp_stream_files.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chroot_package_run.m4 > man/chroot_package_run.1
gzip < man/chroot_package_run.1 > man/chroot_package_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/condor_submit_workers.m4 > man/condor_submit_workers.1
gzip < man/condor_submit_workers.1 > man/condor_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/confuga.m4 > man/confuga.1
gzip < man/confuga.1 > man/confuga.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/confuga_adm.m4 > man/confuga_adm.1
gzip < man/confuga_adm.1 > man/confuga_adm.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/deltadb_query.m4 > man/deltadb_query.1
gzip < man/deltadb_query.1 > man/deltadb_query.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/disk_allocator.m4 > man/disk_allocator.1
gzip < man/disk_allocator.1 > man/disk_allocator.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/make_growfs.m4 > man/make_growfs.1
gzip < man/make_growfs.1 > man/make_growfs.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow.m4 > man/makeflow.1
gzip < man/makeflow.1 > man/makeflow.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_analyze.m4 > man/makeflow_analyze.1
gzip < man/makeflow_analyze.1 > man/makeflow_analyze.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_blast.m4 > man/makeflow_blast.1
gzip < man/makeflow_blast.1 > man/makeflow_blast.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_cleanup.m4 > man/makeflow_ec2_cleanup.1
gzip < man/makeflow_ec2_cleanup.1 > man/makeflow_ec2_cleanup.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_setup.m4 > man/makeflow_ec2_setup.1
gzip < man/makeflow_ec2_setup.1 > man/makeflow_ec2_setup.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_graph_log.m4 > man/makeflow_graph_log.1
gzip < man/makeflow_graph_log.1 > man/makeflow_graph_log.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_linker.m4 > man/makeflow_linker.1
gzip < man/makeflow_linker.1 > man/makeflow_linker.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_monitor.m4 > man/makeflow_monitor.1
gzip < man/makeflow_monitor.1 > man/makeflow_monitor.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_status.m4 > man/makeflow_status.1
gzip < man/makeflow_status.1 > man/makeflow_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_viz.m4 > man/makeflow_viz.1
gzip < man/makeflow_viz.1 > man/makeflow_viz.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/maker_wq.m4 > man/maker_wq.1
gzip < man/maker_wq.1 > man/maker_wq.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_cp.m4 > man/parrot_cp.1
gzip < man/parrot_cp.1 > man/parrot_cp.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_getacl.m4 > man/parrot_getacl.1
gzip < man/parrot_getacl.1 > man/parrot_getacl.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_locate.m4 > man/parrot_locate.1
gzip < man/parrot_locate.1 > man/parrot_locate.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_lsalloc.m4 > man/parrot_lsalloc.1
gzip < man/parrot_lsalloc.1 > man/parrot_lsalloc.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_md5.m4 > man/parrot_md5.1
gzip < man/parrot_md5.1 > man/parrot_md5.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_mkalloc.m4 > man/parrot_mkalloc.1
gzip < man/parrot_mkalloc.1 > man/parrot_mkalloc.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_namespace.m4 > man/parrot_namespace.1
gzip < man/parrot_namespace.1 > man/parrot_namespace.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_package_create.m4 > man/parrot_package_create.1
gzip < man/parrot_package_create.1 > man/parrot_package_create.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_package_run.m4 > man/parrot_package_run.1
gzip < man/parrot_package_run.1 > man/parrot_package_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_run.m4 > man/parrot_run.1
gzip < man/parrot_run.1 > man/parrot_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_setacl.m4 > man/parrot_setacl.1
gzip < man/parrot_setacl.1 > man/parrot_setacl.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_timeout.m4 > man/parrot_timeout.1
gzip < man/parrot_timeout.1 > man/parrot_timeout.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_whoami.m4 > man/parrot_whoami.1
gzip < man/parrot_whoami.1 > man/parrot_whoami.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/pbs_submit_workers.m4 > man/pbs_submit_workers.1
gzip < man/pbs_submit_workers.1 > man/pbs_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/replica_exchange.m4 > man/replica_exchange.1
gzip < man/replica_exchange.1 > man/replica_exchange.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor.m4 > man/resource_monitor.1
gzip < man/resource_monitor.1 > man/resource_monitor.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_histograms.m4 > man/resource_monitor_histograms.1
gzip < man/resource_monitor_histograms.1 > man/resource_monitor_histograms.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_visualizer.m4 > man/resource_monitor_visualizer.1
gzip < man/resource_monitor_visualizer.1 > man/resource_monitor_visualizer.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_align_kernel.m4 > man/sand_align_kernel.1
gzip < man/sand_align_kernel.1 > man/sand_align_kernel.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_align_master.m4 > man/sand_align_master.1
gzip < man/sand_align_master.1 > man/sand_align_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_compress_reads.m4 > man/sand_compress_reads.1
gzip < man/sand_compress_reads.1 > man/sand_compress_reads.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_filter_kernel.m4 > man/sand_filter_kernel.1
gzip < man/sand_filter_kernel.1 > man/sand_filter_kernel.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_filter_master.m4 > man/sand_filter_master.1
gzip < man/sand_filter_master.1 > man/sand_filter_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_uncompress_reads.m4 > man/sand_uncompress_reads.1
gzip < man/sand_uncompress_reads.1 > man/sand_uncompress_reads.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sge_submit_workers.m4 > man/sge_submit_workers.1
gzip < man/sge_submit_workers.1 > man/sge_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/split_fasta.m4 > man/split_fasta.1
gzip < man/split_fasta.1 > man/split_fasta.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/starch.m4 > man/starch.1
gzip < man/starch.1 > man/starch.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/torque_submit_workers.m4 > man/torque_submit_workers.1
gzip < man/torque_submit_workers.1 > man/torque_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/wavefront_master.m4 > man/wavefront_master.1
gzip < man/wavefront_master.1 > man/wavefront_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/weaver.m4 > man/weaver.1
gzip < man/weaver.1 > man/weaver.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_factory.m4 > man/work_queue_factory.1
gzip < man/work_queue_factory.1 > man/work_queue_factory.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_graph_log.m4 > man/work_queue_graph_log.1
gzip < man/work_queue_graph_log.1 > man/work_queue_graph_log.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_pool.m4 > man/work_queue_pool.1
gzip < man/work_queue_pool.1 > man/work_queue_pool.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_status.m4 > man/work_queue_status.1
gzip < man/work_queue_status.1 > man/work_queue_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.9 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_worker.m4 > man/work_queue_worker.1
gzip < man/work_queue_worker.1 > man/work_queue_worker.1.gz
rm man/parrot_md5.1 man/parrot_cp.1 man/resource_monitor.1 man/makeflow_viz.1 man/makeflow_ec2_setup.1 man/parrot_setacl.1 man/makeflow_ec2_cleanup.1 man/sand_filter_master.1 man/work_queue_status.1 man/disk_allocator.1 man/parrot_lsalloc.1 man/split_fasta.1 man/sand_align_kernel.1 man/chroot_package_run.1 man/makeflow_monitor.1 man/parrot_mkalloc.1 man/makeflow_blast.1 man/weaver.1 man/catalog_query.1 man/confuga_adm.1 man/work_queue_graph_log.1 man/chirp_server.1 man/chirp_server_hdfs.1 man/allpairs_master.1 man/parrot_timeout.1 man/maker_wq.1 man/chirp_put.1 man/wavefront_master.1 man/catalog_server.1 man/chirp_distribute.1 man/pbs_submit_workers.1 man/allpairs_multicore.1 man/chirp_get.1 man/parrot_whoami.1 man/sand_uncompress_reads.1 man/resource_monitor_visualizer.1 man/resource_monitor_histograms.1 man/confuga.1 man/parrot_locate.1 man/chirp_fuse.1 man/sand_filter_kernel.1 man/chirp_benchmark.1 man/sand_compress_reads.1 man/makeflow_graph_log.1 man/make_growfs.1 man/catalog_update.1 man/work_queue_factory.1 man/parrot_package_run.1 man/chirp_stream_files.1 man/condor_submit_workers.1 man/makeflow.1 man/starch.1 man/parrot_namespace.1 man/deltadb_query.1 man/torque_submit_workers.1 man/replica_exchange.1 man/chirp_status.1 man/work_queue_pool.1 man/parrot_run.1 man/parrot_package_create.1 man/parrot_getacl.1 man/makeflow_linker.1 man/sge_submit_workers.1 man/work_queue_worker.1 man/sand_align_master.1 man/makeflow_status.1 man/makeflow_analyze.1 man/chirp.1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# disable the tests for now on upstream's request. they will be reenabled
# once the test suite can properly deal with the buildd environment
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 fakeroot debian/rules binary-arch
dh binary-arch --buildsystem=makefile --with python2,python3
   dh_testroot -a -O--buildsystem=makefile
   dh_prep -a -O--buildsystem=makefile
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp
	make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[4]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/apps'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[4]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[4]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[4]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[4]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[4]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[4]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[4]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp cctools_gpu_autodetect cctools_python catalog_update catalog_server watchdog disk_allocator jx2json catalog_query /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libdttools.a libforce_halt_enospc.so /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp auth.h auth_address.h auth_all.h auth_globus.h auth_hostname.h auth_kerberos.h auth_ticket.h auth_unix.h buffer.h category.h copy_tree.h debug.h hash_table.h histogram.h http_query.h int_sizes.h jx.h jx_match.h link.h md5.h rmonitor_poll.h rmsummary.h timestamp.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[4]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp work_queue_factory work_queue_pool /<<PKGBUILDDIR>>/debian/tmp/bin
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libbatch_job.a /<<PKGBUILDDIR>>/debian/tmp/lib
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp batch_job.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools
make[4]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 make_growfs
cp  grow_fuse make_growfs /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 condor_submit_makeflow makeflow_graph_log makeflow_monitor starch makeflow_linker_perl_driver makeflow_linker_python_driver makeflow_archive_query mf_mesos_scheduler mf_mesos_executor mf_mesos_setting mf-mesos-executor makeflow_ec2_setup makeflow_ec2_cleanup
cp makeflow makeflow_viz makeflow_analyze makeflow_linker makeflow_status condor_submit_makeflow makeflow_graph_log makeflow_monitor starch makeflow_linker_perl_driver makeflow_linker_python_driver makeflow_archive_query mf_mesos_scheduler mf_mesos_executor mf_mesos_setting mf-mesos-executor makeflow_ec2_setup makeflow_ec2_cleanup /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/cctools/
cp style.xml /<<PKGBUILDDIR>>/debian/tmp/share/cctools/makeflow-cytoscape-style.xml
make[4]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp work_queue.pm work_queue.so       /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/
mkdir -p              /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Work_Queue
cp Work_Queue.pm      /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp Work_Queue/Task.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Work_Queue
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
chmod 755 work_queue_example.pl
cp work_queue_example.pl /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
chmod 755 work_queue_example.py
cp work_queue.py _work_queue.so /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python3.6/site-packages
cp work_queue.py _work_queue.so /<<PKGBUILDDIR>>/debian/tmp/lib/python3.6/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.py3 /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 work_queue_submit_common condor_submit_workers sge_submit_workers torque_submit_workers pbs_submit_workers slurm_submit_workers work_queue_graph_log
cp work_queue_worker work_queue_status work_queue_example work_queue_submit_common condor_submit_workers sge_submit_workers torque_submit_workers pbs_submit_workers slurm_submit_workers work_queue_graph_log /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libwork_queue.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.c /<<PKGBUILDDIR>>/debian/tmp/doc/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp work_queue.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/apps'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 makeflow_blast/makeflow_blast makeflow_bwa/makeflow_bwa makeflow_gatk/makeflow_gatk makeflow_blasr/makeflow_blasr wq_maker/wq_maker
cp  makeflow_blast/makeflow_blast makeflow_bwa/makeflow_bwa makeflow_gatk/makeflow_gatk makeflow_blasr/makeflow_blasr wq_maker/wq_maker /<<PKGBUILDDIR>>/debian/tmp/bin/
make[3]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[4]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 sand_align_master sand_align_kernel sand_filter_master sand_filter_kernel sand_compress_reads sand_uncompress_reads sand_runCA_5.4 sand_runCA_6.1 sand_runCA_7.0
cp sand_align_master sand_align_kernel sand_filter_master sand_filter_kernel sand_compress_reads sand_uncompress_reads sand_runCA_5.4 sand_runCA_6.1 sand_runCA_7.0 /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[4]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp allpairs_multicore allpairs_master /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[4]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp wavefront wavefront_master /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libftp_lite.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp ftp_lite.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
chmod 755 ResourceMonitor.py
cp ResourceMonitor.py _cResourceMonitor.so cResourceMonitor.py /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp rmonitor_allocations_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp resource_monitor piggybacker rmonitor_poll_example rmonitor_snapshot resource_monitor_histograms /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp librmonitor_helper.so /<<PKGBUILDDIR>>/debian/tmp/lib/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp CChirp.pm CChirp.so       /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/
mkdir -p              /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
cp Chirp/Client.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
cp Chirp/Stat.pm   /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
chmod 755 chirp_perl_example.pl
cp chirp_perl_example.pl /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp Chirp.py _CChirp.so /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp chirp_python_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'install'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
if [ -f /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server ]; then mv /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server.old; fi
chmod 755 chirp_audit_cluster chirp_server_hdfs
cp chirp chirp_get chirp_put chirp_server chirp_status chirp_benchmark chirp_stream_files chirp_fuse chirp_distribute confuga_adm chirp_audit_cluster chirp_server_hdfs /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libchirp.a libconfuga.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp chirp_global.h chirp_multi.h chirp_reli.h chirp_client.h chirp_stream.h chirp_protocol.h chirp_matrix.h chirp_types.h chirp_recursive.h confuga.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/cctools/chirp/
cp -r ../tools/workflows/ /<<PKGBUILDDIR>>/debian/tmp/share/cctools/chirp/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[4]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp -r weaver /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp weaver.py /<<PKGBUILDDIR>>/debian/tmp/bin/weaver
make[4]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[4]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp umbrella  /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
if [ -f umbrella_helper.html ]; then cp umbrella_helper.html /<<PKGBUILDDIR>>/debian/tmp/doc/; fi
make[4]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[4]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp deltadb_query /<<PKGBUILDDIR>>/debian/tmp/bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[4]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
#cp prune_server /<<PKGBUILDDIR>>/debian/tmp/bin/prune_server
mv prune_worker /<<PKGBUILDDIR>>/debian/tmp/bin/prune_worker
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/prune
cp -r prune/* /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/prune
make[4]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc/man
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc/images
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/man/man1
cp *.html manual.css /<<PKGBUILDDIR>>/debian/tmp/doc
if [ -f man/chirp.html ]; then cp man/*.html /<<PKGBUILDDIR>>/debian/tmp/doc/man; fi
if [ -f man/chirp.1.gz ]; then cp man/*.1.gz /<<PKGBUILDDIR>>/debian/tmp/share/man/man1; fi
if [ -d api ]; then cp -rp api /<<PKGBUILDDIR>>/debian/tmp/doc; fi
if [ -d images ]; then cp images/* /<<PKGBUILDDIR>>/debian/tmp/doc/images; fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
for file in cygwin1.dll cyggcc_s-1.dll cygintl-8.dll cygreadline7.dll cygncursesw-10.dll cygiconv-2.dll cygattr-1.dll sh.exe ; do if [ -f /bin/$file ] ; then cp /bin/$file /<<PKGBUILDDIR>>/debian/tmp/bin/ ; fi ; done
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/etc
cp config.mk /<<PKGBUILDDIR>>/debian/tmp/etc/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp COPYING /<<PKGBUILDDIR>>/debian/tmp/doc/
cp README /<<PKGBUILDDIR>>/debian/tmp/doc/
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
# make extensions for other supported python versions
if [ -n "" ]; then \
	for pyver in ; do \
		PYTHON=/usr/bin/python${pyver} ./configure.rerun ; \
		make -B -C work_queue/src/python install CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp ; \
	done ; \
fi
# for now remove the 'apps' scripts till upstream confirms that the language
# extension can be removed
rm -f debian/tmp/bin/*.py
# fix permissions
find debian/tmp/lib -name '*.py' -exec chmod 644 {} \;
# remove undesired pieces
rm debian/tmp/doc/COPYING
# upstream says it should not go into the page
rm debian/tmp/bin/watchdog
# HDFS helpers are useless without HDFS in Debian
rm debian/tmp/bin/*_hdfs
# newer doxygen puts jquery copy
#-rm debian/tmp/doc/api/html/jquery.js
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a -O--buildsystem=makefile
   dh_installdocs -a -O--buildsystem=makefile
   dh_installchangelogs -a -O--buildsystem=makefile
   dh_installman -a -O--buildsystem=makefile
   dh_python2 -a -O--buildsystem=makefile
W: dh_python2:479: Please add dh-python package to Build-Depends
   dh_python3 -a -O--buildsystem=makefile
I: dh_python3 fs:85: renaming debian/python3-workqueue/usr/lib/python3.6/site-packages/_work_queue.so to debian/python3-workqueue/usr/lib/python3.6/site-packages/_work_queue.cpython-36m-arm-linux-gnueabihf.so
   dh_perl -a -O--buildsystem=makefile
   dh_link -a -O--buildsystem=makefile
   dh_strip_nondeterminism -a -O--buildsystem=makefile
   dh_compress -a -O--buildsystem=makefile
   dh_fixperms -a -O--buildsystem=makefile
   dh_missing -a -O--buildsystem=makefile
   dh_strip -a -O--buildsystem=makefile
   dh_makeshlibs -a -O--buildsystem=makefile
   dh_shlibdeps -a -O--buildsystem=makefile
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libtinfo.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libncurses.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libhistory.so.7 (it uses none of the library's symbols)
   dh_installdeb -a -O--buildsystem=makefile
   dh_gencontrol -a -O--buildsystem=makefile
dpkg-gencontrol: warning: Depends field of package coop-computing-tools-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package coop-computing-tools: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package coop-computing-tools: unused substitution variable ${perl:Depends}
   dh_md5sums -a -O--buildsystem=makefile
   dh_builddeb -a -O--buildsystem=makefile
dpkg-deb: building package 'coop-computing-tools-dev' in '../coop-computing-tools-dev_6.2.9-6_armhf.deb'.
dpkg-deb: building package 'coop-computing-tools' in '../coop-computing-tools_6.2.9-6_armhf.deb'.
dpkg-deb: building package 'python3-workqueue-dbgsym' in '../python3-workqueue-dbgsym_6.2.9-6_armhf.deb'.
dpkg-deb: building package 'python-workqueue-dbgsym' in '../python-workqueue-dbgsym_6.2.9-6_armhf.deb'.
dpkg-deb: building package 'python3-workqueue' in '../python3-workqueue_6.2.9-6_armhf.deb'.
dpkg-deb: building package 'python-workqueue' in '../python-workqueue_6.2.9-6_armhf.deb'.
dpkg-deb: building package 'coop-computing-tools-dbgsym' in '../coop-computing-tools-dbgsym_6.2.9-6_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../cctools_6.2.9-6_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build cctools-6.2.9
dpkg-source: info: using options from cctools-6.2.9/debian/source/options: --extend-diff-ignore=\.orig$
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-06-20T05:25:29Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


cctools_6.2.9-6_armhf.changes:
------------------------------

Format: 1.8
Date: Fri, 15 Jun 2018 09:40:17 +0100
Source: cctools
Binary: coop-computing-tools coop-computing-tools-dev coop-computing-tools-doc python-workqueue python3-workqueue
Architecture: armhf
Version: 6.2.9-6
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Alastair McKinstry <mckinstry@debian.org>
Description:
 coop-computing-tools - cooperative computing tools
 coop-computing-tools-dev - libraries and header files for coop-computing-tools
 coop-computing-tools-doc - documentation for coop-computing-tools
 python-workqueue - cooperative computing tools work queue Python bindings
 python3-workqueue - cooperative computing tools work queue Python3 bindings
Changes:
 cctools (6.2.9-6) unstable; urgency=medium
 .
   * More work needed on SYS_openat.patch for Arm64 support
Checksums-Sha1:
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 65b97a42ab418404fa2c957d9040fe02987c17d4 370964 coop-computing-tools-dev_6.2.9-6_armhf.deb
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 783924da61558602e9969bade4cfc5d0ad2bb044 1048936 python-workqueue-dbgsym_6.2.9-6_armhf.deb
 b9f997ab8158a8b33cf72a0f80c35ec5d9024766 309116 python-workqueue_6.2.9-6_armhf.deb
 bdb0304850f964b9d44064391d4da28698c08d78 507124 python3-workqueue-dbgsym_6.2.9-6_armhf.deb
 32cc229e61ca6029da88a2f1adfa4f0aa83b513f 166396 python3-workqueue_6.2.9-6_armhf.deb
Checksums-Sha256:
 5ca38ca22d98c7575093e414884cd981163d4ff2e812dae8b95b8306b4edf912 10570 cctools_6.2.9-6_armhf.buildinfo
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 c863f72587b804e6c136c2e2d666b2db06a62c5f68907b726ade3ac84bb1eaa6 370964 coop-computing-tools-dev_6.2.9-6_armhf.deb
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Files:
 826ef9d720ad4954bd67acd2382a66f8 10570 utils optional cctools_6.2.9-6_armhf.buildinfo
 7e31df7ee32836a7b6553e4feceb8d91 8794280 debug optional coop-computing-tools-dbgsym_6.2.9-6_armhf.deb
 76b6f8824b233543a2de29b73d8e18d2 370964 libs optional coop-computing-tools-dev_6.2.9-6_armhf.deb
 758a9769fc46a0c18a229a8e0ab5a732 1279096 utils optional coop-computing-tools_6.2.9-6_armhf.deb
 cfba14f869457c5ffad6db2dab8f3e39 1048936 debug optional python-workqueue-dbgsym_6.2.9-6_armhf.deb
 d99e7746c08ceffe0f216f9643274121 309116 python optional python-workqueue_6.2.9-6_armhf.deb
 0a97fbafeb3bb4027e24c0a0e1f670ec 507124 debug optional python3-workqueue-dbgsym_6.2.9-6_armhf.deb
 c16c8fc8d324f5a79054cd62db434231 166396 python optional python3-workqueue_6.2.9-6_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


coop-computing-tools-dbgsym_6.2.9-6_armhf.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 8794280 bytes: control archive=2400 bytes.
    2020 bytes,    12 lines      control              
    4346 bytes,    41 lines      md5sums              
 Package: coop-computing-tools-dbgsym
 Source: cctools
 Version: 6.2.9-6
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Alastair McKinstry <mckinstry@debian.org>
 Installed-Size: 10481
 Depends: coop-computing-tools (= 6.2.9-6)
 Section: debug
 Priority: optional
 Description: debug symbols for coop-computing-tools
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lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/doc/coop-computing-tools-dbgsym -> coop-computing-tools


coop-computing-tools-dev_6.2.9-6_armhf.deb
------------------------------------------

 new Debian package, version 2.0.
 size 370964 bytes: control archive=1812 bytes.
     525 bytes,    14 lines      control              
    2900 bytes,    44 lines      md5sums              
 Package: coop-computing-tools-dev
 Source: cctools
 Version: 6.2.9-6
 Architecture: armhf
 Maintainer: Alastair McKinstry <mckinstry@debian.org>
 Installed-Size: 1820
 Section: libs
 Priority: optional
 Homepage: https://ccl.cse.nd.edu/software/
 Description: libraries and header files for coop-computing-tools
  These tools are a collection of software that help users to share resources in
  a complex, heterogeneous, and unreliable computing environment.
  .
  This package provides static libraries and header files for development.

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drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/coop-computing-tools-dev/
-rw-r--r-- root/root      2838 2018-06-15 08:40 ./usr/share/doc/coop-computing-tools-dev/changelog.Debian.gz
-rw-r--r-- root/root      2574 2018-06-15 08:40 ./usr/share/doc/coop-computing-tools-dev/copyright


coop-computing-tools_6.2.9-6_armhf.deb
--------------------------------------

 new Debian package, version 2.0.
 size 1279096 bytes: control archive=4996 bytes.
    1912 bytes,    34 lines      control              
    9855 bytes,   149 lines      md5sums              
 Package: coop-computing-tools
 Source: cctools
 Version: 6.2.9-6
 Architecture: armhf
 Maintainer: Alastair McKinstry <mckinstry@debian.org>
 Installed-Size: 10092
 Depends: libc6 (>= 2.6), libfuse2 (>= 2.8), libglobus-common0 (>= 17), libglobus-gss-assist3 (>= 11), libglobus-gssapi-gsi4 (>= 13), libgomp1 (>= 4.2.1), libncurses6 (>= 6), libreadline7 (>= 6.0), libsqlite3-0 (>= 3.7.15), libtinfo6 (>= 6), zlib1g (>= 1:1.2.0), python:any, python
 Suggests: coop-computing-tools-doc, condor, gridengine-client
 Section: utils
 Priority: optional
 Homepage: https://ccl.cse.nd.edu/software/
 Description: cooperative computing tools
  This is a collection of software that help users to share resources in a
  complex, heterogeneous, and unreliable computing environment. This includes:
  .
   * Chirp: A personal filesystem and I/O protocol that allows unprivileged users
     to share space securely, efficiently, and conveniently. When combined
     with Parrot, Chirp allows users to create custom wide-area
     distributed filesystems.
   * Parrot: A transparent user-level virtual filesystem that allows any ordinary
     program to be attached to a remote storage device such as an FTP
     server or a Chirp server.
   * Makeflow: A workflow system for parallel and distributed computing that uses
     a language very similar to Make.
   * Work Queue: A system and API for building master-worker style programs that
     scale up to thousands of processors.
   * All Pairs: A computational abstraction for running very large Cartesian
     products.
   * Wavefront: A computational abstraction for running very large dynamic
     programming problems.
   * The Fault Tolerant Shell: A high-level programming language that allows
     users to combine the ease of shell scripting, the power of distributed
     programming, and the precision of compiled languages. Basically,
     parallel programming and exception handling for scripts.

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drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/bin/
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-rwxr-xr-x root/root    121824 2018-06-15 08:40 ./usr/bin/allpairs_multicore
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drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/coop-computing-tools/
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drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/man/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/man/man1/
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lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/chirp_md5sum.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/condor_submit_makeflow.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/makeflow_log_parser.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/mpi_queue_worker.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/parrot_identity_box.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/sand_runCA.1.gz -> coop-computing-tools.1.gz
lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/sand_runCA_5.4.1.gz -> coop-computing-tools.1.gz
lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/sand_runCA_6.1.1.gz -> coop-computing-tools.1.gz
lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/sand_runCA_7.0.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/man/man1/starch.bin.1.gz -> coop-computing-tools.1.gz
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-rw-r--r-- root/root      3059 2018-06-15 08:40 ./usr/share/man/man1/work_queue_worker.1.gz


python-workqueue-dbgsym_6.2.9-6_armhf.deb
-----------------------------------------

 new Debian package, version 2.0.
 size 1048936 bytes: control archive=648 bytes.
     449 bytes,    12 lines      control              
     318 bytes,     3 lines      md5sums              
 Package: python-workqueue-dbgsym
 Source: cctools
 Version: 6.2.9-6
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Alastair McKinstry <mckinstry@debian.org>
 Installed-Size: 1239
 Depends: python-workqueue (= 6.2.9-6)
 Section: debug
 Priority: optional
 Description: debug symbols for python-workqueue
 Build-Ids: 16032ca20369facbe7b94fe8229452123445f6c9 2077aa5977dbe11a4e32222ddb28361d59dc42d3 326249dc3c0c0d6596b0c911a68028177fd33177

drwxr-xr-x root/root         0 2018-06-15 08:40 ./
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/debug/.build-id/16/
-rw-r--r-- root/root    362032 2018-06-15 08:40 ./usr/lib/debug/.build-id/16/032ca20369facbe7b94fe8229452123445f6c9.debug
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/debug/.build-id/20/
-rw-r--r-- root/root    290512 2018-06-15 08:40 ./usr/lib/debug/.build-id/20/77aa5977dbe11a4e32222ddb28361d59dc42d3.debug
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/debug/.build-id/32/
-rw-r--r-- root/root    602136 2018-06-15 08:40 ./usr/lib/debug/.build-id/32/6249dc3c0c0d6596b0c911a68028177fd33177.debug
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/doc/python-workqueue-dbgsym -> python-workqueue


python-workqueue_6.2.9-6_armhf.deb
----------------------------------

 new Debian package, version 2.0.
 size 309116 bytes: control archive=2012 bytes.
     688 bytes,    14 lines      control              
    3329 bytes,    40 lines      md5sums              
     166 bytes,     9 lines   *  postinst             #!/bin/sh
     271 bytes,    14 lines   *  prerm                #!/bin/sh
 Package: python-workqueue
 Source: cctools
 Version: 6.2.9-6
 Architecture: armhf
 Maintainer: Alastair McKinstry <mckinstry@debian.org>
 Installed-Size: 1743
 Depends: libc6 (>= 2.4), libglobus-common0 (>= 17), libglobus-gss-assist3 (>= 11), libglobus-gssapi-gsi4 (>= 13), zlib1g (>= 1:1.2.0), python (<< 2.8), python (>= 2.7), python:any (>= 2.6.6-7~)
 Section: python
 Priority: optional
 Homepage: https://ccl.cse.nd.edu/software/
 Description: cooperative computing tools work queue Python bindings
  CCTools's Work Queue is a system and API for building master-worker style
  programs that scale up to thousands of processors. This package provides
  bindings to access this system from Python.

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-rw-r--r-- root/root    377568 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/_CChirp.so
-rw-r--r-- root/root    268256 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/_cResourceMonitor.so
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-rw-r--r-- root/root       314 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/__init__.py
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-rw-r--r-- root/root     17681 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/client.py
-rw-r--r-- root/root     16787 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/db_sqlite.py
-rw-r--r-- root/root      4688 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/glob.py
-rw-r--r-- root/root      6648 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/main.py
-rw-r--r-- root/root      2930 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/master_local.py
-rw-r--r-- root/root      5252 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/master_wq.py
-rw-r--r-- root/root      3219 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/parser.py
-rw-r--r-- root/root      1658 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/timer.py
-rw-r--r-- root/root      2117 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/utils.py
-rw-r--r-- root/root     13830 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/worker.py
-rw-r--r-- root/root     11567 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/prune/worker_local.py
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drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/weaver/
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-rw-r--r-- root/root     12665 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/weaver/dataset.py
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-rw-r--r-- root/root      4484 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/weaver/logger.py
-rw-r--r-- root/root      8494 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/weaver/nest.py
-rw-r--r-- root/root      2365 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/weaver/options.py
-rw-r--r-- root/root      9242 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/weaver/script.py
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drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/weaver/test/
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-rw-r--r-- root/root    164031 2018-06-15 08:40 ./usr/lib/python2.7/dist-packages/work_queue.py
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/python-workqueue/
-rw-r--r-- root/root      2838 2018-06-15 08:40 ./usr/share/doc/python-workqueue/changelog.Debian.gz
-rw-r--r-- root/root      2574 2018-06-15 08:40 ./usr/share/doc/python-workqueue/copyright


python3-workqueue-dbgsym_6.2.9-6_armhf.deb
------------------------------------------

 new Debian package, version 2.0.
 size 507124 bytes: control archive=536 bytes.
     369 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: python3-workqueue-dbgsym
 Source: cctools
 Version: 6.2.9-6
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Alastair McKinstry <mckinstry@debian.org>
 Installed-Size: 598
 Depends: python3-workqueue (= 6.2.9-6)
 Section: debug
 Priority: optional
 Description: debug symbols for python3-workqueue
 Build-Ids: cf2c94c7cb8fdecdc3b94b9ee5054643cd55d4e3

drwxr-xr-x root/root         0 2018-06-15 08:40 ./
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/debug/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/debug/.build-id/cf/
-rw-r--r-- root/root    601720 2018-06-15 08:40 ./usr/lib/debug/.build-id/cf/2c94c7cb8fdecdc3b94b9ee5054643cd55d4e3.debug
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/
lrwxrwxrwx root/root         0 2018-06-15 08:40 ./usr/share/doc/python3-workqueue-dbgsym -> python3-workqueue


python3-workqueue_6.2.9-6_armhf.deb
-----------------------------------

 new Debian package, version 2.0.
 size 166396 bytes: control archive=1136 bytes.
     630 bytes,    14 lines      control              
     351 bytes,     4 lines      md5sums              
     169 bytes,     9 lines   *  postinst             #!/bin/sh
     409 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: python3-workqueue
 Source: cctools
 Version: 6.2.9-6
 Architecture: armhf
 Maintainer: Alastair McKinstry <mckinstry@debian.org>
 Installed-Size: 776
 Depends: libc6 (>= 2.4), libpython3.6 (>= 3.6.5), zlib1g (>= 1:1.2.0), python3 (<< 3.7), python3 (>= 3.6~), python3:any (>= 3.3.2-2~)
 Section: python
 Priority: optional
 Homepage: https://ccl.cse.nd.edu/software/
 Description: cooperative computing tools work queue Python3 bindings
  CCTools's Work Queue is a system and API for building master-worker style
  programs that scale up to thousands of processors. This package provides
  bindings to access this system from Python3.

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drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/python3/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/lib/python3/dist-packages/
-rw-r--r-- root/root    605468 2018-06-15 08:40 ./usr/lib/python3/dist-packages/_work_queue.cpython-36m-arm-linux-gnueabihf.so
-rw-r--r-- root/root    170614 2018-06-15 08:40 ./usr/lib/python3/dist-packages/work_queue.py
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/
drwxr-xr-x root/root         0 2018-06-15 08:40 ./usr/share/doc/python3-workqueue/
-rw-r--r-- root/root      2838 2018-06-15 08:40 ./usr/share/doc/python3-workqueue/changelog.Debian.gz
-rw-r--r-- root/root      2574 2018-06-15 08:40 ./usr/share/doc/python3-workqueue/copyright


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| Post Build                                                                   |
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+------------------------------------------------------------------------------+
| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 207788
Build-Time: 298
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 848
Job: cctools_6.2.9-6
Machine Architecture: armhf
Package: cctools
Package-Time: 1175
Source-Version: 6.2.9-6
Space: 207788
Status: successful
Version: 6.2.9-6
--------------------------------------------------------------------------------
Finished at 2018-06-20T05:25:29Z
Build needed 00:19:35, 207788k disk space
Raspbian Package Auto-Building

Build log for cctools (6.2.9-6) on armhf
