cctools →
6.2.10-1 →
armhf → 2018-07-04 07:03:17
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| cctools 6.2.10-1 (armhf) Wed, 04 Jul 2018 06:44:58 +0000 |
+==============================================================================+
Package: cctools
Version: 6.2.10-1
Source Version: 6.2.10-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-b4108cad-a54d-46bb-81b5-59e4a84b8682' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.8 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.6 MB]
Fetched 23.5 MB in 11s (2178 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'cctools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org:/neurodebian-team/cctools.git
Please use:
git clone https://salsa.debian.org:/neurodebian-team/cctools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 9788 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main cctools 6.2.10-1 (dsc) [2476 B]
Get:2 http://172.17.0.1/private buster-staging/main cctools 6.2.10-1 (tar) [9773 kB]
Get:3 http://172.17.0.1/private buster-staging/main cctools 6.2.10-1 (diff) [12.3 kB]
Fetched 9788 kB in 10s (941 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/cctools-aAv4XZ/cctools-6.2.10' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/cctools-aAv4XZ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-5t1VB8/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-5t1VB8/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-5t1VB8/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (11.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15728 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), python-all-dev (>= 2.6.6-3~), python3-all-dev, libglobus-common-dev, default-libmysqlclient-dev, libfuse-dev, libperl-dev, libkrb5-dev, libsqlite3-dev, pkg-config, libglobus-gss-assist-dev, net-tools, doxygen, libreadline6-dev | libreadline-dev, libncurses5-dev | libncurses-dev, swig, m4, mpi-default-dev
Filtered Build-Depends: debhelper (>= 10), python-all-dev (>= 2.6.6-3~), python3-all-dev, libglobus-common-dev, default-libmysqlclient-dev, libfuse-dev, libperl-dev, libkrb5-dev, libsqlite3-dev, pkg-config, libglobus-gss-assist-dev, net-tools, doxygen, libreadline6-dev, libncurses5-dev, swig, m4, mpi-default-dev
dpkg-deb: building package 'sbuild-build-depends-cctools-dummy' in '/<<BUILDDIR>>/resolver-5t1VB8/apt_archive/sbuild-build-depends-cctools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-cctools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ Sources [631 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ Packages [702 B]
Fetched 2666 B in 0s (14.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install cctools build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils comerr-dev debhelper
default-libmysqlclient-dev dh-autoreconf dh-python dh-strip-nondeterminism
doxygen dwz file gettext gettext-base groff-base ibverbs-providers
intltool-debian krb5-multidev libarchive-zip-perl libbsd0 libclang1-6.0
libcroco3 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6
libevent-pthreads-2.1-6 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libfuse-dev libfuse2 libgfortran4 libglib2.0-0
libglobus-callout-dev libglobus-callout0 libglobus-common-dev
libglobus-common0 libglobus-gsi-callback-dev libglobus-gsi-callback0
libglobus-gsi-cert-utils-dev libglobus-gsi-cert-utils0
libglobus-gsi-credential-dev libglobus-gsi-credential1
libglobus-gsi-openssl-error-dev libglobus-gsi-openssl-error0
libglobus-gsi-proxy-core-dev libglobus-gsi-proxy-core0
libglobus-gsi-proxy-ssl-dev libglobus-gsi-proxy-ssl1
libglobus-gsi-sysconfig-dev libglobus-gsi-sysconfig1
libglobus-gss-assist-dev libglobus-gss-assist3 libglobus-gssapi-gsi-dev
libglobus-gssapi-gsi4 libglobus-openssl-module-dev libglobus-openssl-module0
libgraphite2-3 libgssapi-krb5-2 libgssrpc4 libharfbuzz0b libhwloc-dev
libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-le-hb0 libicu60
libk5crypto3 libkadm5clnt-mit11 libkadm5srv-mit11 libkdb5-9 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 libllvm6.0 libltdl-dev libltdl7
libmagic-mgc libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
libmariadbclient18 libmpdec2 libncurses-dev libnl-3-200 libnl-route-3-200
libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1 libpmix2
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
libreadline-dev libselinux1-dev libsepol1-dev libsigsegv2 libsqlite3-dev
libssl-dev libssl1.0.2 libtimedate-perl libtool libxapian30 libxml2 m4
man-db mime-support mpi-default-dev mysql-common net-tools
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf python python-all python-all-dev python-dev python-minimal
python2 python2-dev python2-minimal python2.7 python2.7-dev
python2.7-minimal python3 python3-all python3-all-dev python3-dev
python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-dev
python3.6-minimal swig swig3.0 zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation doc-base dh-make doxygen-latex doxygen-doc doxygen-gui graphviz
gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc fuse krb5-user
libhwloc-contrib-plugins libtool-doc ncurses-doc openmpi-doc pciutils
readline-doc sqlite3-doc libssl-doc gfortran | fortran95-compiler gcj-jdk
xapian-tools m4-doc apparmor less www-browser opencl-icd gfortran keychain
libpam-ssh monkeysphere ssh-askpass libmail-box-perl python-doc python-tk
python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3.6-venv python3.6-doc swig-doc swig-examples swig3.0-examples
swig3.0-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libglobus-callout-doc libglobus-common-doc
libglobus-gsi-callback-doc libglobus-gsi-cert-utils-doc
libglobus-gsi-credential-doc libglobus-gsi-openssl-error-doc
libglobus-gsi-proxy-core-doc libglobus-gsi-proxy-ssl-doc
libglobus-gsi-sysconfig-doc libglobus-gss-assist-doc
libglobus-gssapi-gsi-doc libglobus-openssl-module-doc krb5-locales xauth
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils comerr-dev debhelper
default-libmysqlclient-dev dh-autoreconf dh-python dh-strip-nondeterminism
doxygen dwz file gettext gettext-base groff-base ibverbs-providers
intltool-debian krb5-multidev libarchive-zip-perl libbsd0 libclang1-6.0
libcroco3 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6
libevent-pthreads-2.1-6 libexpat1-dev libfile-stripnondeterminism-perl
libfreetype6 libfuse-dev libfuse2 libgfortran4 libglib2.0-0
libglobus-callout-dev libglobus-callout0 libglobus-common-dev
libglobus-common0 libglobus-gsi-callback-dev libglobus-gsi-callback0
libglobus-gsi-cert-utils-dev libglobus-gsi-cert-utils0
libglobus-gsi-credential-dev libglobus-gsi-credential1
libglobus-gsi-openssl-error-dev libglobus-gsi-openssl-error0
libglobus-gsi-proxy-core-dev libglobus-gsi-proxy-core0
libglobus-gsi-proxy-ssl-dev libglobus-gsi-proxy-ssl1
libglobus-gsi-sysconfig-dev libglobus-gsi-sysconfig1
libglobus-gss-assist-dev libglobus-gss-assist3 libglobus-gssapi-gsi-dev
libglobus-gssapi-gsi4 libglobus-openssl-module-dev libglobus-openssl-module0
libgraphite2-3 libgssapi-krb5-2 libgssrpc4 libharfbuzz0b libhwloc-dev
libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu-le-hb0 libicu60
libk5crypto3 libkadm5clnt-mit11 libkadm5srv-mit11 libkdb5-9 libkeyutils1
libkrb5-3 libkrb5-dev libkrb5support0 libllvm6.0 libltdl-dev libltdl7
libmagic-mgc libmagic1 libmariadbclient-dev libmariadbclient-dev-compat
libmariadbclient18 libmpdec2 libncurses-dev libnl-3-200 libnl-route-3-200
libopenmpi-dev libopenmpi3 libpciaccess0 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libperl-dev libpipeline1 libpmix2
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib
libreadline-dev libselinux1-dev libsepol1-dev libsigsegv2 libsqlite3-dev
libssl-dev libssl1.0.2 libtimedate-perl libtool libxapian30 libxml2 m4
man-db mime-support mpi-default-dev mysql-common net-tools
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client pkg-config
po-debconf python python-all python-all-dev python-dev python-minimal
python2 python2-dev python2-minimal python2.7 python2.7-dev
python2.7-minimal python3 python3-all python3-all-dev python3-dev
python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-dev
python3.6-minimal sbuild-build-depends-cctools-dummy swig swig3.0 zlib1g-dev
0 upgraded, 165 newly installed, 0 to remove and 33 not upgraded.
Need to get 143 MB/145 MB of archives.
After this operation, 385 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-5t1VB8/apt_archive ./ sbuild-build-depends-cctools-dummy 0.invalid.0 [992 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.3-2 [1146 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-1 [393 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-1 [1077 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-1 [1841 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-1 [298 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.6-1 [565 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.6-1 [1383 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.5-3 [36.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.6-1 [1638 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.6-1 [234 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.5-3 [19.7 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.5-3 [24.1 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2o-1 [888 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf net-tools armhf 1.60+git20161116.90da8a0-2 [221 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.33-3 [234 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.33-3 [106 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.33-3 [64.7 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-6 [117 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20180525-1 [70.6 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libevent-2.1-6 armhf 2.1.8-stable-4 [156 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf openssh-client armhf 1:7.7p1-2 [672 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3.1 [736 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-6 [434 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf comerr-dev armhf 2.1-1.44.2-1 [37.7 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2.1 [547 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.042-1 [12.1 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.1-1+rpi1 [828 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-6 [1218 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev armhf 1:10.1.29-6+b1 [1528 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libmariadbclient-dev-compat armhf 1:10.1.29-6+b1 [27.6 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf default-libmysqlclient-dev armhf 1.0.4 [3708 B]
Get:63 http://172.17.0.1/private buster-staging/main armhf dh-python all 3.20180326 [93.2 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libllvm6.0 armhf 1:6.0-3+rpi1 [12.5 MB]
Get:65 http://172.17.0.1/private buster-staging/main armhf libclang1-6.0 armhf 1:6.0-3+rpi1 [5734 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libxapian30 armhf 1.4.5-1 [940 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf doxygen armhf 1.8.13-10 [3257 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libibverbs1 armhf 18.1-1 [42.7 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf ibverbs-providers armhf 18.1-1 [19.7 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libgssrpc4 armhf 1.16-2 [82.2 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libkdb5-9 armhf 1.16-2 [67.3 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libkadm5srv-mit11 armhf 1.16-2 [77.7 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libkadm5clnt-mit11 armhf 1.16-2 [68.3 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf krb5-multidev armhf 1.16-2 [155 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libevent-core-2.1-6 armhf 2.1.8-stable-4 [117 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libevent-pthreads-2.1-6 armhf 2.1.8-stable-4 [47.6 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libfuse2 armhf 2.9.7-1 [114 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libsepol1-dev armhf 2.8-1 [309 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libselinux1-dev armhf 2.8-1 [156 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libfuse-dev armhf 2.9.7-1 [144 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libltdl7 armhf 2.4.6-2.1 [386 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libglobus-common0 armhf 17.4-1 [86.2 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libglobus-callout0 armhf 3.15-2 [9838 B]
Get:91 http://172.17.0.1/private buster-staging/main armhf libltdl-dev armhf 2.4.6-2.1 [158 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libglobus-common-dev armhf 17.4-1 [50.0 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libglobus-callout-dev armhf 3.15-2 [5622 B]
Get:94 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-openssl-error0 armhf 3.8-2 [8190 B]
Get:95 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-ssl1 armhf 5.10-2 [7680 B]
Get:96 http://172.17.0.1/private buster-staging/main armhf libglobus-openssl-module0 armhf 4.8-2 [5916 B]
Get:97 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-cert-utils0 armhf 9.16-2 [10.8 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-sysconfig1 armhf 8.1-1 [20.1 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-callback0 armhf 5.13-2 [25.5 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libssl-dev armhf 1.1.0h-4 [1376 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-ssl-dev armhf 5.10-2 [6240 B]
Get:102 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-openssl-error-dev armhf 3.8-2 [5214 B]
Get:103 http://172.17.0.1/private buster-staging/main armhf libglobus-openssl-module-dev armhf 4.8-2 [4578 B]
Get:104 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-cert-utils-dev armhf 9.16-2 [6644 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-sysconfig-dev armhf 8.1-1 [7696 B]
Get:106 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-callback-dev armhf 5.13-2 [6352 B]
Get:107 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-credential1 armhf 7.14-1 [24.4 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-credential-dev armhf 7.14-1 [7008 B]
Get:109 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-core0 armhf 8.6-2 [25.4 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libglobus-gsi-proxy-core-dev armhf 8.6-2 [6866 B]
Get:111 http://172.17.0.1/private buster-staging/main armhf libglobus-gssapi-gsi4 armhf 13.8-1 [51.8 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libglobus-gss-assist3 armhf 11.1-1 [21.8 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libglobus-gssapi-gsi-dev armhf 13.8-1 [12.1 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libglobus-gss-assist-dev armhf 11.1-1 [7776 B]
Get:115 http://172.17.0.1/private buster-staging/main armhf libhwloc5 armhf 1.11.10-2+rpi1 [85.8 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libhwloc-dev armhf 1.11.10-2+rpi1 [141 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libhwloc-plugins armhf 1.11.10-2+rpi1 [15.6 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libibverbs-dev armhf 18.1-1 [99.4 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libkrb5-dev armhf 1.16-2 [46.8 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20180210-4 [278 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libpmix2 armhf 2.1.1-2 [285 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libopenmpi3 armhf 3.1.0-7+rpi1 [1787 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf openmpi-common all 3.1.0-7+rpi1 [159 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf openmpi-bin armhf 3.1.0-7+rpi1 [199 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 3.1.0-7+rpi1 [936 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libperl-dev armhf 5.26.2-6 [2637 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-1 [886 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-1 [27.6 MB]
Get:130 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:131 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:133 http://172.17.0.1/private buster-staging/main armhf libpython3.6 armhf 3.6.6-1 [1185 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf libpython3.6-dev armhf 3.6.6-1 [43.7 MB]
Get:135 http://172.17.0.1/private buster-staging/main armhf libpython3-dev armhf 3.6.5-3 [19.7 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf libpython3-all-dev armhf 3.6.5-3 [1064 B]
Get:137 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf libsqlite3-dev armhf 3.24.0-1 [655 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf mpi-default-dev armhf 1.13 [5476 B]
Get:140 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:141 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-1 [289 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:143 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:144 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.15-3 [1068 B]
Get:145 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.6.6-1 [79.1 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.6.6-1 [144 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf python3-all armhf 3.6.5-3 [1064 B]
Get:148 http://172.17.0.1/private buster-staging/main armhf python3.6-dev armhf 3.6.6-1 [508 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf python3-dev armhf 3.6.5-3 [1268 B]
Get:150 http://172.17.0.1/private buster-staging/main armhf python3-all-dev armhf 3.6.5-3 [1064 B]
Get:151 http://172.17.0.1/private buster-staging/main armhf swig3.0 armhf 3.0.12-1.1 [1225 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf swig armhf 3.0.12-1.1 [310 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking man-db (2.8.3-2) ...
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Unpacking python2.7 (2.7.15-1) ...
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Setting up libpython2.7-minimal:armhf (2.7.15-1) ...
Setting up python2.7-minimal (2.7.15-1) ...
Setting up python2-minimal (2.7.15-3) ...
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Setting up python-minimal (2.7.15-3) ...
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Unpacking python (2.7.15-3) ...
Selecting previously unselected package libpython3.6-minimal:armhf.
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Unpacking libpython3.6-minimal:armhf (3.6.6-1) ...
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Setting up libpython3.6-minimal:armhf (3.6.6-1) ...
Setting up python3.6-minimal (3.6.6-1) ...
Setting up python3-minimal (3.6.5-3) ...
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No schema files found: removed existing output file.
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Setting up gettext-base (0.19.8.1-6) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up libmariadbclient18:armhf (1:10.1.29-6+b1) ...
Setting up m4 (1.4.18-1) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up libfreetype6:armhf (2.8.1-2) ...
Setting up libmagic-mgc (1:5.33-3) ...
Setting up libmagic1:armhf (1:5.33-3) ...
Setting up libgraphite2-3:armhf (1.3.11-2) ...
Setting up libssl1.0.2:armhf (1.0.2o-1) ...
Setting up pkg-config (0.29-4) ...
Setting up libglobus-gsi-proxy-ssl1:armhf (5.10-2) ...
Setting up libevent-pthreads-2.1-6:armhf (2.1.8-stable-4) ...
Setting up openmpi-common (3.1.0-7+rpi1) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Setting up libltdl7:armhf (2.4.6-2.1) ...
Setting up libexpat1-dev:armhf (2.2.5-3) ...
Setting up libpciaccess0:armhf (0.14-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-9) ...
Setting up libpcre32-3:armhf (2:8.39-9) ...
Setting up libpcre16-3:armhf (2:8.39-9) ...
Setting up ocl-icd-libopencl1:armhf (2.2.12-1) ...
Setting up libkeyutils1:armhf (1.5.9-9.2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libnl-3-200:armhf (3.4.0-1) ...
Setting up net-tools (1.60+git20161116.90da8a0-2) ...
Setting up libncurses-dev:armhf (6.1+20180210-4) ...
Setting up libpython2.7-stdlib:armhf (2.7.15-1) ...
Setting up autopoint (0.19.8.1-6) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.042-1) ...
Setting up libedit2:armhf (3.1-20180525-1) ...
Setting up libpython3.6-stdlib:armhf (3.6.6-1) ...
Setting up libmariadbclient-dev (1:10.1.29-6+b1) ...
Setting up libpcre3-dev:armhf (2:8.39-9) ...
Setting up swig (3.0.12-1.1) ...
Setting up libglobus-common0:armhf (17.4-1) ...
Setting up libglobus-gsi-openssl-error0:armhf (3.8-2) ...
Setting up python3.6 (3.6.6-1) ...
Setting up libltdl-dev:armhf (2.4.6-2.1) ...
Setting up libmariadbclient-dev-compat:armhf (1:10.1.29-6+b1) ...
Setting up libglobus-openssl-module0:armhf (4.8-2) ...
Setting up python2.7 (2.7.15-1) ...
Setting up libharfbuzz0b:armhf (1.8.1-1+rpi1) ...
Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.33-3) ...
Setting up libhwloc5:armhf (1.11.10-2+rpi1) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up libglobus-callout0:armhf (3.15-2) ...
Setting up libglobus-gsi-proxy-ssl-dev:armhf (5.10-2) ...
Setting up libglobus-gsi-sysconfig1:armhf (8.1-1) ...
Setting up libpython2.7:armhf (2.7.15-1) ...
Setting up automake (1:1.15.1-3.1) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up man-db (2.8.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2-stdlib:armhf (2.7.15-3) ...
Setting up libpython2.7-dev:armhf (2.7.15-1) ...
Setting up default-libmysqlclient-dev:armhf (1.0.4) ...
Setting up libselinux1-dev:armhf (2.8-1) ...
Setting up python2.7-dev (2.7.15-1) ...
Setting up libpython3.6:armhf (3.6.6-1) ...
Setting up libtool (2.4.6-2.1) ...
Setting up libpython3-stdlib:armhf (3.6.5-3) ...
Setting up libibverbs1:armhf (18.1-1) ...
Setting up libglobus-common-dev:armhf (17.4-1) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libglobus-gsi-cert-utils0:armhf (9.16-2) ...
Setting up python3 (3.6.5-3) ...
Setting up libhwloc-dev:armhf (1.11.10-2+rpi1) ...
Setting up libglobus-callout-dev:armhf (3.15-2) ...
Setting up libfuse-dev (2.9.7-1) ...
Setting up libpython3.6-dev:armhf (3.6.6-1) ...
Setting up python2 (2.7.15-3) ...
Setting up libpython2-dev:armhf (2.7.15-3) ...
Setting up libpython-stdlib:armhf (2.7.15-3) ...
Setting up ibverbs-providers:armhf (18.1-1) ...
Setting up python2-dev (2.7.15-3) ...
Setting up libglobus-gsi-callback0:armhf (5.13-2) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libglobus-gsi-openssl-error-dev:armhf (3.8-2) ...
Setting up python3.6-dev (3.6.6-1) ...
Setting up python3-lib2to3 (3.6.6-1) ...
Setting up dh-python (3.20180326) ...
Setting up libibverbs-dev:armhf (18.1-1) ...
Setting up python3-distutils (3.6.6-1) ...
Setting up python (2.7.15-3) ...
Setting up libpython3-dev:armhf (3.6.5-3) ...
Setting up libpython-dev:armhf (2.7.15-3) ...
Setting up python-dev (2.7.15-3) ...
Setting up libpython-all-dev:armhf (2.7.15-3) ...
Setting up python3-dev (3.6.5-3) ...
Setting up libglobus-gsi-credential1:armhf (7.14-1) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up libglobus-openssl-module-dev:armhf (4.8-2) ...
Setting up libpython3-all-dev:armhf (3.6.5-3) ...
Setting up python3-all (3.6.5-3) ...
Setting up libglobus-gsi-proxy-core0:armhf (8.6-2) ...
Setting up openssh-client (1:7.7p1-2) ...
Setting up python-all (2.7.15-3) ...
Setting up libgssrpc4:armhf (1.16-2) ...
Setting up libglobus-gsi-cert-utils-dev:armhf (9.16-2) ...
Setting up python3-all-dev (3.6.5-3) ...
Setting up libkdb5-9:armhf (1.16-2) ...
Setting up libglobus-gsi-sysconfig-dev:armhf (8.1-1) ...
Setting up libglobus-gsi-callback-dev:armhf (5.13-2) ...
Setting up python-all-dev (2.7.15-3) ...
Setting up libglobus-gssapi-gsi4:armhf (13.8-1) ...
Setting up libkadm5srv-mit11:armhf (1.16-2) ...
Setting up libkadm5clnt-mit11:armhf (1.16-2) ...
Setting up libglobus-gsi-credential-dev:armhf (7.14-1) ...
Setting up libglobus-gss-assist3:armhf (11.1-1) ...
Setting up krb5-multidev:armhf (1.16-2) ...
Setting up libglobus-gsi-proxy-core-dev:armhf (8.6-2) ...
Setting up libglobus-gssapi-gsi-dev:armhf (13.8-1) ...
Setting up libkrb5-dev:armhf (1.16-2) ...
Setting up libglobus-gss-assist-dev:armhf (11.1-1) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.042-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libhwloc-plugins:armhf (1.11.10-2+rpi1) ...
Setting up libllvm6.0:armhf (1:6.0-3+rpi1) ...
Setting up gettext (0.19.8.1-6) ...
Setting up libclang1-6.0:armhf (1:6.0-3+rpi1) ...
Setting up libpmix2:armhf (2.1.1-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libopenmpi3:armhf (3.1.0-7+rpi1) ...
Setting up po-debconf (1.0.20) ...
Setting up doxygen (1.8.13-10) ...
Setting up openmpi-bin (3.1.0-7+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: error: no alternatives for mpi
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up debhelper (11.3.5) ...
Setting up dh-autoreconf (19) ...
Setting up libopenmpi-dev:armhf (3.1.0-7+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up mpi-default-dev (1.13) ...
Setting up sbuild-build-depends-cctools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-21+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-19 gcc-7_7.3.0-19 libc6-dev_2.27-3+rpi1 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 linux-libc-dev_4.16.12-1+rpi1
Package versions: adduser_3.117 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3.1 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3 binutils_2.30-21+rpi1 binutils-arm-linux-gnueabihf_2.30-21+rpi1 binutils-common_2.30-21+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 comerr-dev_2.1-1.44.2-1 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.3.0-3+rpi1 cpp-7_7.3.0-19 dash_0.5.8-2.10 dbus_1.12.8-3 dbus-user-session_1.12.8-3 debconf_1.5.67 debhelper_11.3.5 debianutils_4.8.6 default-libmysqlclient-dev_1.0.4 dh-autoreconf_19 dh-python_3.20180326 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.8-1 dmsetup_2:1.02.145-4.1+b4 doxygen_1.8.13-10 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 e2fsprogs-l10n_1.44.2-1 fakeroot_1.22-2 fdisk_2.32-0.1 file_1:5.33-3 findutils_4.6.0+git+20171230-2 g++_4:7.3.0-3+rpi1 g++-7_7.3.0-19 gcc_4:7.3.0-3+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b7 gcc-5-base_5.5.0-8 gcc-7_7.3.0-19 gcc-7-base_7.3.0-19 gcc-8-base_8.1.0-8+rpi1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.8-1 gnupg-agent_2.2.8-1 gnupg-l10n_2.2.8-1 gnupg-utils_2.2.8-1 gpg_2.2.8-1 gpg-agent_2.2.8-1 gpg-wks-client_2.2.8-1 gpg-wks-server_2.2.8-1 gpgconf_2.2.8-1 gpgsm_2.2.8-1 gpgv_2.2.8-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 ibverbs-providers_18.1-1 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 krb5-multidev_1.16-2 libacl1_2.2.52-3 libapparmor1_2.12-4 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19 libassuan0_2.5.1-2 libatomic1_8.1.0-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.30-21+rpi1 libblkid1_2.32-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3+rpi1 libc-dev-bin_2.27-3+rpi1 libc6_2.27-3+rpi1 libc6-dev_2.27-3+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-8+rpi1 libcilkrts5_7.3.0-19 libclang1-6.0_1:6.0-3+rpi1 libcom-err2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.8-3 libdebconfclient0_0.243 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libevent-2.1-6_2.1.8-stable-4 libevent-core-2.1-6_2.1.8-stable-4 libevent-pthreads-2.1-6_2.1.8-stable-4 libexpat1_2.2.5-3 libexpat1-dev_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2 libfdisk1_2.32-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libfuse-dev_2.9.7-1 libfuse2_2.9.7-1 libgcc-7-dev_7.3.0-19 libgcc1_1:8.1.0-8+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-19 libglib2.0-0_2.56.1-2 libglobus-callout-dev_3.15-2 libglobus-callout0_3.15-2 libglobus-common-dev_17.4-1 libglobus-common0_17.4-1 libglobus-gsi-callback-dev_5.13-2 libglobus-gsi-callback0_5.13-2 libglobus-gsi-cert-utils-dev_9.16-2 libglobus-gsi-cert-utils0_9.16-2 libglobus-gsi-credential-dev_7.14-1 libglobus-gsi-credential1_7.14-1 libglobus-gsi-openssl-error-dev_3.8-2 libglobus-gsi-openssl-error0_3.8-2 libglobus-gsi-proxy-core-dev_8.6-2 libglobus-gsi-proxy-core0_8.6-2 libglobus-gsi-proxy-ssl-dev_5.10-2 libglobus-gsi-proxy-ssl1_5.10-2 libglobus-gsi-sysconfig-dev_8.1-1 libglobus-gsi-sysconfig1_8.1-1 libglobus-gss-assist-dev_11.1-1 libglobus-gss-assist3_11.1-1 libglobus-gssapi-gsi-dev_13.8-1 libglobus-gssapi-gsi4_13.8-1 libglobus-openssl-module-dev_4.8-2 libglobus-openssl-module0_4.8-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8.1.0-8+rpi1 libgpg-error0_1.31-1 libgraphite2-3_1.3.11-2 libgssapi-krb5-2_1.16-2 libgssrpc4_1.16-2 libharfbuzz0b_1.8.1-1+rpi1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-2+rpi1 libhwloc-plugins_1.11.10-2+rpi1 libhwloc5_1.11.10-2+rpi1 libibverbs-dev_18.1-1 libibverbs1_18.1-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2 libkadm5clnt-mit11_1.16-2 libkadm5srv-mit11_1.16-2 libkdb5-9_1.16-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5-dev_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 libllvm6.0_1:6.0-3+rpi1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmariadbclient-dev_1:10.1.29-6+b1 libmariadbclient-dev-compat_1:10.1.29-6+b1 libmariadbclient18_1:10.1.29-6+b1 libmount1_2.32-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20180210-4 libncurses5_6.1+20180210-4 libncurses6_6.1+20180210-4 libncursesw5_6.1+20180210-4 libncursesw6_6.1+20180210-4 libnettle6_3.4-1 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.5-4 libnss-systemd_238-4 libopenmpi-dev_3.1.0-7+rpi1 libopenmpi3_3.1.0-7+rpi1 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-4 libpam0g_1.1.8-3.7 libpciaccess0_0.14-1 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl-dev_5.26.2-6 libperl5.24_5.24.1-7 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpmix2_2.1.1-2 libpng16-16_1.6.34-1 libprocps7_2:3.3.15-2 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-1 libpython2.7-dev_2.7.15-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libpython3-all-dev_3.6.5-3 libpython3-dev_3.6.5-3 libpython3-stdlib_3.6.5-3 libpython3.6_3.6.6-1 libpython3.6-dev_3.6.6-1 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libreadline-dev_7.0-5 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-2 libselinux1_2.8-1 libselinux1-dev_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsepol1-dev_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32-0.1 libsqlite3-0_3.24.0-1 libsqlite3-dev_3.24.0-1 libss2_1.44.2-1 libssl-dev_1.1.0h-4 libssl1.0.2_1.0.2o-1 libssl1.1_1.1.0h-4 libstdc++-7-dev_7.3.0-19 libstdc++6_8.1.0-8+rpi1 libsystemd0_238-4 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4 libtinfo6_6.1+20180210-4 libtool_2.4.6-2.1 libubsan0_7.3.0-19 libudev1_238-4 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1 libxapian30_1.4.5-1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.12-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.3-2 mawk_1.3.3-17 mime-support_3.61 mount_2.32-0.1 mpi-default-dev_1.13 multiarch-support_2.27-3+rpi1 mysql-common_5.8+1.0.4 nano_2.9.8-1 ncurses-base_6.1+20180210-4 ncurses-bin_6.1+20180210-4 net-tools_1.60+git20161116.90da8a0-2 netbase_5.4 ocl-icd-libopencl1_2.2.12-1 openmpi-bin_3.1.0-7+rpi1 openmpi-common_3.1.0-7+rpi1 openssh-client_1:7.7p1-2 openssl_1.1.0h-4 passwd_1:4.5-1 patch_2.7.6-2 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-1 python2.7-dev_2.7.15-1 python2.7-minimal_2.7.15-1 python3_3.6.5-3 python3-all_3.6.5-3 python3-all-dev_3.6.5-3 python3-dev_3.6.5-3 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.5-3 python3.6_3.6.6-1 python3.6-dev_3.6.6-1 python3.6-minimal_3.6.6-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-cctools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 swig_3.0.12-1.1 swig3.0_3.0.12-1.1 systemd_238-4 systemd-sysv_238-4 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_238-4 util-linux_2.32-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Jun 28 15:27:07 2018 UTC
gpgv: using RSA key 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./cctools_6.2.10-1.dsc
dpkg-source: info: extracting cctools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking cctools_6.2.10.orig.tar.xz
dpkg-source: info: unpacking cctools_6.2.10-1.debian.tar.xz
dpkg-source: info: applying sys_openat.patch
dpkg-source: info: applying hurd
dpkg-source: info: applying debian_configure
dpkg-source: info: applying disable_doxygen
dpkg-source: info: applying 2to3
dpkg-source: info: applying rm-sqlite
dpkg-source: info: applying 64-bit.patch
dpkg-source: info: applying multiarch_configure
dpkg-source: info: applying python37-version
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-b4108cad-a54d-46bb-81b5-59e4a84b8682
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package cctools
dpkg-buildpackage: info: source version 6.2.10-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build cctools-6.2.10
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from cctools-6.2.10/debian/source/options: --extend-diff-ignore=\.orig$ --compression=xz
fakeroot debian/rules clean
dh clean --buildsystem=makefile --with python2,python3
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
[ -e Makefile.config ] && dh_auto_clean || true
rm Makefile.config configure.rerun
rm: cannot remove 'Makefile.config': No such file or directory
rm: cannot remove 'configure.rerun': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
rm -rf api hdfs-setup.template python/python-workqueue/setup.cfg
# remove testrun left-overs
rm dttools/src/microbench dttools/src/work_queue_example
rm: cannot remove 'dttools/src/microbench': No such file or directory
rm: cannot remove 'dttools/src/work_queue_example': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
find /<<PKGBUILDDIR>> -name '*.test.log' -delete
find /<<PKGBUILDDIR>> -name '*_test' -delete
rm -rf sand/test/filter_verification/random.cand.filter.tmp/
rm -rf sand/test/test_20.cand.filter.tmp/
rm -f sand/test/test_20.cand sand/test/test_20.cfa sand/test/*.log
rm -rf makeflow/test/input/ makeflow/test/worker.pid
rm -rf makeflow/test/dirs/testcase.subdir.01.makeflow.makeflowlog
rm -rf makeflow/test/dirs/testcase.subdir.01.makeflow.wqlog
rm -rf makeflow/test/src/
rm dttools/src/multirun sand/test/banded.log
rm: cannot remove 'dttools/src/multirun': No such file or directory
rm: cannot remove 'sand/test/banded.log': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
rm .configure.tmp.o
rm: cannot remove '.configure.tmp.o': No such file or directory
debian/rules:45: recipe for target 'override_dh_auto_clean' failed
make[1]: [override_dh_auto_clean] Error 1 (ignored)
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean -O--buildsystem=makefile
debian/rules build-arch
dh build-arch --buildsystem=makefile --with python2,python3
dh_update_autotools_config -a -O--buildsystem=makefile
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# disable warning about unused results (necessary because warning is error
# is ON)
TWOTOTHREE=/usr/bin/2to3-2.7 CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wno-unused-result" ./configure --with-globus-path /usr \
--with-krb5-path /usr --with-readline-path /usr \
--with-mpi-path /usr --with-fuse-path /usr --with-zlib-path /usr \
--with-python-path /usr
Linux mb-lxc-02 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:04:12 UTC 2018 armv8l GNU/Linux
ignoring unknown package /usr
ignoring unknown package /usr
checking for gcc.../usr/bin/gcc
checking for g++.../usr/bin/g++
checking for GNU make in several places...
checking for make.../usr/bin/make
checking if make is GNU make...yes
checking if gcc supports -Wno-unused-parameter...yes
checking if gcc supports -Wno-unknown-pragmas...yes
checking if gcc supports -Wno-deprecated-declarations...yes
checking if gcc supports -Wno-unused-const-variable...yes
checking if ld supports the --as-needed flag...yes
arm-linux-gnueabihf
using a globus flavor of 'gcc32' (if this is wrong, use the --globus-flavor argument)
checking for /usr/include/gcc32/globus_common.h...no
checking for /usr/include/globus/globus_common.h...yes
checking for /usr/lib/libglobus_gss_assist.so...no
checking for /usr/lib/libglobus_gss_assist.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gss_assist.so...yes
checking for /usr/lib/libglobus_gssapi_gsi.so...no
checking for /usr/lib/libglobus_gssapi_gsi.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gssapi_gsi.so...yes
checking for /usr/lib/libglobus_gsi_proxy_core.so...no
checking for /usr/lib/libglobus_gsi_proxy_core.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_proxy_core.so...yes
checking for /usr/lib/libglobus_gsi_credential.so...no
checking for /usr/lib/libglobus_gsi_credential.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_credential.so...yes
checking for /usr/lib/libglobus_gsi_callback.so...no
checking for /usr/lib/libglobus_gsi_callback.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_callback.so...yes
checking for /usr/lib/libglobus_oldgaa.so...no
checking for /usr/lib/libglobus_oldgaa.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_oldgaa.so...yes
checking for /usr/lib/libglobus_gsi_sysconfig.so...no
checking for /usr/lib/libglobus_gsi_sysconfig.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_sysconfig.so...yes
checking for /usr/lib/libglobus_gsi_cert_utils.so...no
checking for /usr/lib/libglobus_gsi_cert_utils.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_gsi_cert_utils.so...yes
checking for /usr/lib/libglobus_openssl.so...no
checking for /usr/lib/libglobus_openssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_openssl.so...yes
checking for /usr/lib/libglobus_openssl_error.so...no
checking for /usr/lib/libglobus_openssl_error.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_openssl_error.so...yes
checking for /usr/lib/libglobus_callout.so...no
checking for /usr/lib/libglobus_callout.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_callout.so...yes
checking for /usr/lib/libglobus_proxy_ssl.so...no
checking for /usr/lib/libglobus_proxy_ssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_proxy_ssl.so...yes
checking for /usr/lib/libglobus_common.so...no
checking for /usr/lib/libglobus_common.a...no
checking for /usr/lib/arm-linux-gnueabihf/libglobus_common.so...yes
checking for /usr/lib/libltdl.so...no
checking for /usr/lib/libltdl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libltdl.so...yes
*** skipping irods support
checking for /usr/lib/libmysqlclient.so...no
checking for /usr/lib/libmysqlclient.a...no
checking for /usr/lib/arm-linux-gnueabihf/libmysqlclient.so...yes
*** skipping xrootd support
*** skipping cvmfs support
checking for /usr/lib/libfuse.so...no
checking for /usr/lib/libfuse.a...no
checking for /usr/lib/arm-linux-gnueabihf/libfuse.so...yes
checking for /usr/lib/libreadline.so...no
checking for /usr/lib/libreadline.a...no
checking for /usr/lib/arm-linux-gnueabihf/libreadline.so...yes
checking for /usr/bin/perl...yes
perl version is 5.26.2
checking for /usr/bin/python2...yes
python version is 2.7.15
checking for /usr/include/python2.7/Python.h...yes
found python development libraries
python version is suitable for umbrella
python version is suitable for prune
python version is suitable for weaver
checking for /usr/bin/python3...yes
checking for /usr/bin/2to3-2.7...yes
python3 version is 3.6.6
checking for /usr/include/python3.6m/Python.h...yes
checking for /usr/bin/python3-config...yes
found python3 development libraries
checking for /usr/bin/swig...yes
checking for /usr/lib/libssl.so...no
checking for /usr/lib/libssl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libssl.so...yes
checking for /usr/lib/libcrypto.so...no
checking for /usr/lib/libcrypto.a...no
checking for /usr/lib/arm-linux-gnueabihf/libcrypto.so...yes
checking for /usr/lib/libresolv.so...no
checking for /usr/lib/libresolv.a...no
checking for /usr/lib/arm-linux-gnueabihf/libresolv.so...yes
checking for /usr/lib/libsocket.so...no
checking for /usr/lib/libsocket.a...no
checking for /usr/lib/arm-linux-gnueabihf/libsocket.so...no
checking for /usr/lib/arm-linux-gnueabihf/libsocket.a...no
checking for /usr/lib/libnsl.so...no
checking for /usr/lib/libnsl.a...no
checking for /usr/lib/arm-linux-gnueabihf/libnsl.so...yes
checking for /usr/lib/libz.so...no
checking for /usr/lib/libz.a...no
checking for /usr/lib/arm-linux-gnueabihf/libz.so...yes
checking for gmtime_r in /usr/include/time.h...yes
checking for fdatasync in /usr/include/unistd.h...yes
checking for isnan in /usr/include/math.h...yes
checking for localtime_r in /usr/include/time.h...yes
checking for localtime_s in /usr/include/time.h...no
checking for localtime_s in /usr/include/arm-linux-gnueabihf/time.h...no
checking for openat in /usr/include/fcntl.h...yes
checking for pread in /usr/include/unistd.h...yes
checking for pread64 in /usr/include/unistd.h...yes
checking for pwrite in /usr/include/unistd.h...yes
checking for pwrite64 in /usr/include/unistd.h...yes
checking for strchrnul in /usr/include/string.h...yes
checking for strsignal in /usr/include/string.h...yes
checking for usleep in /usr/include/unistd.h...yes
checking for utime in /usr/include/utime.h...yes
checking for utimensat in /usr/include/sys/stat.h...no
checking for utimensat in /usr/include/arm-linux-gnueabihf/sys/stat.h...yes
checking for header attr/xattr.h...no
checking for header sys/xattr.h...yes
checking for header ifaddrs.h...yes
checking for header inttypes.h...yes
checking for header stdint.h...yes
checking for header sys/statfs.h...yes
checking for header sys/statvfs.h...yes
checking for header syslog.h...yes
checking for doxygen.../usr/bin/doxygen
checking for m4.../usr/bin/m4
checking for nroff.../usr/bin/nroff
checking for package compatibility...
parrot is NOT supported on LINUX ARMHF
resource_monitor IS supported on LINUX
checking for all the things I know how to build...
package dttools found
package batch_job found
package grow found
package makeflow found
package work_queue found
package apps found
package sand found
package allpairs found
package wavefront found
package ftp_lite found
package resource_monitor found
package chirp found
package weaver found
package umbrella found
package deltadb found
package prune found
package doc found
Creating config.mk...
To re-configure, type './configure.rerun'
To build, type 'make'
To build and install, type 'make install'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--buildsystem=makefile
make -j1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
COMPILE address.o
COMPILE auth.o
COMPILE auth_address.o
COMPILE auth_all.o
COMPILE auth_globus.o
COMPILE auth_hostname.o
COMPILE auth_kerberos.o
COMPILE auth_ticket.o
COMPILE auth_unix.o
COMPILE b64.o
COMPILE bitmap.o
COMPILE buffer.o
buffer.c: In function 'buffer_putvfstring':
buffer.c:110:9: warning: unused variable 'used' [-Wunused-variable]
size_t used = inuse(b);
^~~~
COMPILE catalog_query.o
COMPILE category.o
COMPILE cctools.o
COMPILE change_process_title.o
COMPILE chunk.o
COMPILE clean_dir.o
COMPILE compat-at.o
COMPILE console_login.o
COMPILE copy_stream.o
COMPILE copy_tree.o
COMPILE create_dir.o
COMPILE daemon.o
COMPILE datagram.o
COMPILE debug.o
COMPILE debug_file.o
COMPILE debug_journal.o
COMPILE debug_stream.o
COMPILE debug_syslog.o
COMPILE disk_alloc.o
COMPILE domain_name.o
COMPILE domain_name_cache.o
COMPILE dpopen.o
COMPILE elfheader.o
elfheader.c: In function 'elf_interp':
elfheader.c:135:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
case ELFCLASS32: {
^
elfheader.c:172:3: note: here
case ELFCLASS64: {
^~~~
elfheader.c:172:20: warning: this statement may fall through [-Wimplicit-fallthrough=]
case ELFCLASS64: {
^
elfheader.c:209:3: note: here
default:
^~~~~~~
COMPILE envtools.o
COMPILE fast_popen.o
COMPILE fd.o
COMPILE file_cache.o
COMPILE full_io.o
COMPILE get_canonical_path.o
COMPILE get_line.o
COMPILE getopt.o
COMPILE getopt_aux.o
COMPILE gpu_info.o
COMPILE hash_cache.o
COMPILE hash_table.o
hash_table.c: In function 'jenkins_hash':
hash_table.c:339:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
c += ((ub4) k[10] << 24);
~~^~~~~~~~~~~~~~~~~~~~~~
hash_table.c:340:2: note: here
case 10:
^~~~
hash_table.c:341:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
c += ((ub4) k[9] << 16);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:342:2: note: here
case 9:
^~~~
hash_table.c:343:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
c += ((ub4) k[8] << 8);
~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:345:2: note: here
case 8:
^~~~
hash_table.c:346:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
b += ((ub4) k[7] << 24);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:347:2: note: here
case 7:
^~~~
hash_table.c:348:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
b += ((ub4) k[6] << 16);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:349:2: note: here
case 6:
^~~~
hash_table.c:350:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
b += ((ub4) k[5] << 8);
~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:351:2: note: here
case 5:
^~~~
hash_table.c:352:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
b += k[4];
~~^~~~~~~
hash_table.c:353:2: note: here
case 4:
^~~~
hash_table.c:354:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
a += ((ub4) k[3] << 24);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:355:2: note: here
case 3:
^~~~
hash_table.c:356:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
a += ((ub4) k[2] << 16);
~~^~~~~~~~~~~~~~~~~~~~~
hash_table.c:357:2: note: here
case 2:
^~~~
hash_table.c:358:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
a += ((ub4) k[1] << 8);
~~^~~~~~~~~~~~~~~~~~~~
hash_table.c:359:2: note: here
case 1:
^~~~
COMPILE hdfs_library.o
COMPILE histogram.o
COMPILE hmac.o
COMPILE host_disk_info.o
COMPILE host_memory_info.o
COMPILE http_query.o
COMPILE interfaces_address.o
COMPILE itable.o
COMPILE json.o
json.c: In function 'new_value':
json.c:140:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
value->_reserved.object_mem = (*(char **) &value->u.object.values) + values_size;
^~~~~
json.c: In function 'json_parse_ex':
json.c:368:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
(*(json_char **) &top->u.object.values) += string_length + 1;
^
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
case '\n': ++ cur_line; cur_line_begin = i; \
~~~~~~~~~~~~~~~^~~
json.c:263:16: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:187:4: note: here
case ' ': case '\t': case '\r'
^
json.c:263:16: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
case '\n': ++ cur_line; cur_line_begin = i; \
~~~~~~~~~~~~~~~^~~
json.c:395:16: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:187:4: note: here
case ' ': case '\t': case '\r'
^
json.c:395:16: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:186:44: warning: this statement may fall through [-Wimplicit-fallthrough=]
case '\n': ++ cur_line; cur_line_begin = i; \
~~~~~~~~~~~~~~~^~~
json.c:558:19: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:187:4: note: here
case ' ': case '\t': case '\r'
^
json.c:558:19: note: in expansion of macro 'whitespace'
whitespace:
^~~~~~~~~~
json.c:583:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
if (flags & flag_need_comma)
^
json.c:589:19: note: here
default:
^~~~~~~
json.c:190:39: warning: 'string_length' may be used uninitialized in this function [-Wmaybe-uninitialized]
do { if (!state.first_pass) string [string_length] = b; ++ string_length; } while (0);
^
json.c:244:20: note: 'string_length' was declared here
unsigned int string_length;
^~~~~~~~~~~~~
json.c:319:35: warning: 'string' may be used uninitialized in this function [-Wmaybe-uninitialized]
string [string_length ++] = 0x80 | (uc_b2 & 0x3F);
^
json.c:627:48: warning: 'num_fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
num_fraction = (num_fraction * 10) + (b - '0');
~~~~~~~~~~~~~~^~~~~
json.c:619:40: warning: 'num_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
num_e = (num_e * 10) + (b - '0');
~~~~~~~^~~~~
json.c:666:63: warning: 'num_digits' may be used uninitialized in this function [-Wmaybe-uninitialized]
top->u.dbl += ((double) num_fraction) / (pow (10, (double) num_digits));
~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE json_aux.o
COMPILE jx.o
jx.c: In function 'jx_copy':
jx.c:584:10: warning: 'c' may be used uninitialized in this function [-Wmaybe-uninitialized]
c->line = j->line;
~~~~~~~~^~~~~~~~~
COMPILE jx_database.o
COMPILE jx_match.o
COMPILE jx_parse.o
COMPILE jx_print.o
COMPILE jx_pretty_print.o
COMPILE jx_table.o
COMPILE jx_export.o
COMPILE jx_eval.o
COMPILE jx_function.o
COMPILE link.o
COMPILE link_auth.o
COMPILE list.o
COMPILE load_average.o
COMPILE md5.o
COMPILE memfdexe.o
COMPILE mergesort.o
COMPILE mkdir_recursive.o
COMPILE twister.o
COMPILE nvpair.o
COMPILE nvpair_jx.o
COMPILE password_cache.o
COMPILE path.o
COMPILE path_disk_size_info.o
COMPILE pattern.o
In file included from pattern.c:30:0:
luapatt.c: In function 'match':
luapatt.c:311:16: warning: this statement may fall through [-Wimplicit-fallthrough=]
s++; /* 1 match already done */
~^~
luapatt.c:313:13: note: here
case '*': /* 0 or more repetitions */
^~~~
COMPILE preadwrite.o
COMPILE process.o
COMPILE random.o
COMPILE rmonitor.o
COMPILE rmonitor_poll.o
COMPILE rmsummary.o
COMPILE set.o
COMPILE sha1.o
COMPILE shell.o
COMPILE sigdef.o
COMPILE sleeptools.o
COMPILE sort_dir.o
COMPILE stats.o
stats.c: In function 'stats_touch':
stats.c:44:7: warning: unused variable 'rc' [-Wunused-variable]
int rc = hash_table_insert(stats, name, s);
^~
COMPILE string_array.o
COMPILE stringtools.o
COMPILE text_array.o
COMPILE text_list.o
COMPILE timer.o
COMPILE timestamp.o
COMPILE unlink_recursive.o
COMPILE uptime.o
COMPILE url_encode.o
COMPILE username.o
COMPILE uuid.o
COMPILE xxmalloc.o
ar rv libdttools.a address.o auth.o auth_address.o auth_all.o auth_globus.o auth_hostname.o auth_kerberos.o auth_ticket.o auth_unix.o b64.o bitmap.o buffer.o catalog_query.o category.o cctools.o change_process_title.o chunk.o clean_dir.o compat-at.o console_login.o copy_stream.o copy_tree.o create_dir.o daemon.o datagram.o debug.o debug_file.o debug_journal.o debug_stream.o debug_syslog.o disk_alloc.o domain_name.o domain_name_cache.o dpopen.o elfheader.o envtools.o fast_popen.o fd.o file_cache.o full_io.o get_canonical_path.o get_line.o getopt.o getopt_aux.o gpu_info.o hash_cache.o hash_table.o hdfs_library.o histogram.o hmac.o host_disk_info.o host_memory_info.o http_query.o interfaces_address.o itable.o json.o json_aux.o jx.o jx_database.o jx_match.o jx_parse.o jx_print.o jx_pretty_print.o jx_table.o jx_export.o jx_eval.o jx_function.o link.o link_auth.o list.o load_average.o md5.o memfdexe.o mergesort.o mkdir_recursive.o twister.o nvpair.o nvpair_jx.o password_cache.o path.o path_disk_size_info.o pattern.o preadwrite.o process.o random.o rmonitor.o rmonitor_poll.o rmsummary.o set.o sha1.o shell.o sigdef.o sleeptools.o sort_dir.o stats.o string_array.o stringtools.o text_array.o text_list.o timer.o timestamp.o unlink_recursive.o uptime.o url_encode.o username.o uuid.o xxmalloc.o
ar: creating libdttools.a
a - address.o
a - auth.o
a - auth_address.o
a - auth_all.o
a - auth_globus.o
a - auth_hostname.o
a - auth_kerberos.o
a - auth_ticket.o
a - auth_unix.o
a - b64.o
a - bitmap.o
a - buffer.o
a - catalog_query.o
a - category.o
a - cctools.o
a - change_process_title.o
a - chunk.o
a - clean_dir.o
a - compat-at.o
a - console_login.o
a - copy_stream.o
a - copy_tree.o
a - create_dir.o
a - daemon.o
a - datagram.o
a - debug.o
a - debug_file.o
a - debug_journal.o
a - debug_stream.o
a - debug_syslog.o
a - disk_alloc.o
a - domain_name.o
a - domain_name_cache.o
a - dpopen.o
a - elfheader.o
a - envtools.o
a - fast_popen.o
a - fd.o
a - file_cache.o
a - full_io.o
a - get_canonical_path.o
a - get_line.o
a - getopt.o
a - getopt_aux.o
a - gpu_info.o
a - hash_cache.o
a - hash_table.o
a - hdfs_library.o
a - histogram.o
a - hmac.o
a - host_disk_info.o
a - host_memory_info.o
a - http_query.o
a - interfaces_address.o
a - itable.o
a - json.o
a - json_aux.o
a - jx.o
a - jx_database.o
a - jx_match.o
a - jx_parse.o
a - jx_print.o
a - jx_pretty_print.o
a - jx_table.o
a - jx_export.o
a - jx_eval.o
a - jx_function.o
a - link.o
a - link_auth.o
a - list.o
a - load_average.o
a - md5.o
a - memfdexe.o
a - mergesort.o
a - mkdir_recursive.o
a - twister.o
a - nvpair.o
a - nvpair_jx.o
a - password_cache.o
a - path.o
a - path_disk_size_info.o
a - pattern.o
a - preadwrite.o
a - process.o
a - random.o
a - rmonitor.o
a - rmonitor_poll.o
a - rmsummary.o
a - set.o
a - sha1.o
a - shell.o
a - sigdef.o
a - sleeptools.o
a - sort_dir.o
a - stats.o
a - string_array.o
a - stringtools.o
a - text_array.o
a - text_list.o
a - timer.o
a - timestamp.o
a - unlink_recursive.o
a - uptime.o
a - url_encode.o
a - username.o
a - uuid.o
a - xxmalloc.o
ranlib libdttools.a
COMPILE libforce_halt_enospc.o
COMPILE libforce_halt_enospc.so
COMPILE catalog_update.o
LINK catalog_update
COMPILE catalog_server.o
LINK catalog_server
COMPILE watchdog.o
LINK watchdog
COMPILE disk_allocator.o
LINK disk_allocator
COMPILE jx2json.o
LINK jx2json
COMPILE catalog_query_tool.o
LINK catalog_query
COMPILE auth_test.o
LINK auth_test
COMPILE disk_alloc_test.o
LINK disk_alloc_test
COMPILE jx_test.o
LINK jx_test
COMPILE microbench.o
LINK microbench
COMPILE multirun.o
LINK multirun
COMPILE jx_count_obj_test.o
LINK jx_count_obj_test
COMPILE histogram_test.o
LINK histogram_test
COMPILE category_test.o
LINK category_test
rm watchdog.o catalog_update.o category_test.o jx_test.o multirun.o histogram_test.o jx2json.o jx_count_obj_test.o disk_alloc_test.o disk_allocator.o catalog_server.o microbench.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[2]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
COMPILE chirp_tool.o
COMPILE chirp_global.o
COMPILE chirp_multi.o
chirp_multi.c: In function 'chirp_volume_open':
chirp_multi.c:110:23: warning: '/key' directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
sprintf(filename, "%s/key", v->root);
^~~~
chirp_multi.c:110:2: note: 'sprintf' output between 5 and 1028 bytes into a destination of size 1024
sprintf(filename, "%s/key", v->root);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c:123:23: warning: '/hosts' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=]
sprintf(filename, "%s/hosts", v->root);
^~~~~~
chirp_multi.c:123:2: note: 'sprintf' output between 7 and 1030 bytes into a destination of size 1024
sprintf(filename, "%s/hosts", v->root);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c: In function 'chirp_multi_create':
chirp_multi.c:289:25: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(keypath, "/%s", current_volume->key);
^
chirp_multi.c:289:4: note: 'sprintf' output between 2 and 1025 bytes into a destination of size 1024
sprintf(keypath, "/%s", current_volume->key);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
chirp_multi.c:301:29: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=]
sprintf(info.rpath, "%s/%s", current_volume->key, cookie);
^
chirp_multi.c:301:3: note: 'sprintf' output 2 or more bytes (assuming 1025) into a destination of size 1024
sprintf(info.rpath, "%s/%s", current_volume->key, cookie);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE chirp_recursive.o
COMPILE chirp_reli.o
COMPILE chirp_client.o
COMPILE chirp_matrix.o
COMPILE chirp_stream.o
COMPILE chirp_ticket.o
chirp_ticket.c: In function 'chirp_ticket_read':
chirp_ticket.c:90:9: warning: unused variable 'l' [-Wunused-variable]
size_t l = strlen(ticket);
^
chirp_ticket.c: In function 'chirp_ticket_filename':
chirp_ticket.c:188:7: warning: unused variable 'result' [-Wunused-variable]
int result = chirp_ticket_isticketsubject(ticket_subject, &digest);
^~~~~~
chirp_ticket.c: In function 'chirp_ticket_subject':
chirp_ticket.c:197:6: warning: unused variable 'result' [-Wunused-variable]
int result = chirp_ticket_isticketfilename(ticket_filename, &digest);
^~~~~~
ar rv libchirp.a chirp_global.o chirp_multi.o chirp_recursive.o chirp_reli.o chirp_client.o chirp_matrix.o chirp_stream.o chirp_ticket.o
ar: creating libchirp.a
a - chirp_global.o
a - chirp_multi.o
a - chirp_recursive.o
a - chirp_reli.o
a - chirp_client.o
a - chirp_matrix.o
a - chirp_stream.o
a - chirp_ticket.o
ranlib libchirp.a
LINK chirp
COMPILE chirp_get.o
LINK chirp_get
COMPILE chirp_put.o
LINK chirp_put
COMPILE chirp_stats.o
COMPILE chirp_thirdput.o
COMPILE chirp_alloc.o
chirp_alloc.c: In function 'alloc_state_load':
chirp_alloc.c:120:10: warning: variable 'result' set but not used [-Wunused-but-set-variable]
INT64_T result = cfs->pread(s->fd, buffer, sizeof(buffer), 0);
^~~~~~
chirp_alloc.c: In function 'alloc_state_save':
chirp_alloc.c:148:11: warning: variable 'result' set but not used [-Wunused-but-set-variable]
INT64_T result = snprintf(buffer, sizeof(buffer), "%" PRId64 "\n%" PRId64 "\n", s->size, s->inuse);
^~~~~~
chirp_alloc.c: In function 'alloc_state_create':
chirp_alloc.c:166:11: warning: variable 'result' set but not used [-Wunused-but-set-variable]
INT64_T result = snprintf(buffer, sizeof(buffer), "%" PRId64 " 0\n", size);
^~~~~~
COMPILE chirp_audit.o
COMPILE chirp_acl.o
COMPILE chirp_group.o
COMPILE chirp_filesystem.o
COMPILE chirp_fs_hdfs.o
COMPILE chirp_fs_local.o
chirp_fs_local.c: In function 'chirp_fs_local_resolve':
chirp_fs_local.c:384:3: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized]
close(fd);
^~~~~~~~~
COMPILE chirp_fs_local_scheduler.o
COMPILE chirp_fs_chirp.o
COMPILE chirp_fs_confuga.o
COMPILE chirp_job.o
COMPILE chirp_sqlite.o
COMPILE confuga.o
confuga.c: In function 'dbupgrade':
confuga.c:174:11: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 0: {
^
confuga.c:194:3: note: here
case 1: {
^~~~
confuga.c:194:11: warning: this statement may fall through [-Wimplicit-fallthrough=]
case 1: {
^
confuga.c:292:3: note: here
default: {
^~~~~~~
COMPILE confuga_namespace.o
confuga_namespace.c: In function 'fupdate':
confuga_namespace.c:308:6: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int n;
^
confuga_namespace.c: In function 'confuga_metadata_update':
confuga_namespace.c:439:6: warning: variable 'n' set but not used [-Wunused-but-set-variable]
int n;
^
In file included from confuga_namespace.c:9:0:
confuga_namespace.c: In function 'resolve.isra.1':
/<<PKGBUILDDIR>>/dttools/src/catch.h:25:12: warning: 'fd' may be used uninitialized in this function [-Wmaybe-uninitialized]
PROTECT(close(fd));\
^~~~~
confuga_namespace.c:109:6: note: 'fd' was declared here
int fd;
^~
COMPILE confuga_replica.o
In file included from /<<PKGBUILDDIR>>/dttools/src/catch.h:10:0,
from chirp_sqlite.h:11,
from confuga_replica.c:10:
confuga_replica.c: In function 'waitall':
/<<PKGBUILDDIR>>/dttools/src/debug.h:110:32: warning: 'id' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define debug cctools_debug
^~~~~~~~~~~~~
confuga_replica.c:1109:17: note: 'id' was declared here
chirp_jobid_t id;
^~
confuga_replica.c: In function 'confugaR_replicate':
confuga_replica.c:229:54: warning: '/file/' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:51: note: directive argument in the range [0, 255]
confuga_replica.c:229:2: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 4096
snprintf(replica_closed, sizeof(replica_closed), "%s/file/" CONFUGA_FID_PRIFMT, host_to.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
confuga_replica.c:252:51: warning: '/file/' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=]
snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:48: note: directive argument in the range [0, 255]
confuga_replica.c:252:3: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 4096
snprintf(replica_from, sizeof(replica_from), "%s/file/" CONFUGA_FID_PRIFMT, host_from.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
confuga_replica.c:286:12: warning: 'size' may be used uninitialized in this function [-Wmaybe-uninitialized]
sqlcatch(sqlite3_bind_int64(stmt, 4, size));
^~~~~~~~~~~~~~~~~~
confuga_replica.c:287:12: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
sqlcatch(sqlite3_bind_int64(stmt, 5, start));
^~~~~~~~~~~~~~~~~~
confuga_replica.c: In function 'confuga_replica_open':
confuga_replica.c:347:51: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size 1024 [-Wformat-truncation=]
snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
^~
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:50: note: directive argument in the range [0, 255]
confuga_replica.c:347:3: note: 'snprintf' output between 47 and 4142 bytes into a destination of size 1024
snprintf(replica->path, sizeof(replica->path), "%s/file/" CONFUGA_FID_PRIFMT, replica->host.root, CONFUGA_FID_PRIARGS(fid));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPILE confuga_node.o
COMPILE confuga_job.o
confuga_job.c: In function 'confugaJ_schedule':
confuga_job.c:577:11: warning: 'sid' may be used uninitialized in this function [-Wmaybe-uninitialized]
sqlcatch(sqlite3_bind_int64(stmt, 2, sid));
^~~~~~~~~~~~~~~~~~
confuga_job.c:542:16: note: 'sid' was declared here
confuga_sid_t sid;
^~~
COMPILE confuga_file.o
COMPILE confuga_gc.o
ar rv libconfuga.a confuga.o confuga_namespace.o confuga_replica.o confuga_node.o confuga_job.o confuga_file.o confuga_gc.o chirp_global.o chirp_multi.o chirp_recursive.o chirp_reli.o chirp_client.o chirp_matrix.o chirp_stream.o chirp_ticket.o chirp_sqlite.o
ar: creating libconfuga.a
a - confuga.o
a - confuga_namespace.o
a - confuga_replica.o
a - confuga_node.o
a - confuga_job.o
a - confuga_file.o
a - confuga_gc.o
a - chirp_global.o
a - chirp_multi.o
a - chirp_recursive.o
a - chirp_reli.o
a - chirp_client.o
a - chirp_matrix.o
a - chirp_stream.o
a - chirp_ticket.o
a - chirp_sqlite.o
ranlib libconfuga.a
COMPILE chirp_server.o
chirp_server.c: In function 'run_in_child_process':
chirp_server.c:280:1: warning: control reaches end of non-void function [-Wreturn-type]
}
^
LINK chirp_server
COMPILE chirp_status.o
LINK chirp_status
COMPILE chirp_benchmark.o
LINK chirp_benchmark
COMPILE chirp_stream_files.o
LINK chirp_stream_files
COMPILE chirp_fuse.o
LINK chirp_fuse
COMPILE chirp_distribute.o
LINK chirp_distribute
COMPILE confuga_adm.o
LINK confuga_adm
COMPILE chirp_swig_wrap.o
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
SWIG chirp.i (perl5)
COMPILE chirp_wrap.o
LINK CChirp.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
SWIG chirp.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE chirp_wrap.o
LINK _CChirp.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
rm chirp_stream_files.o chirp_server.o chirp_get.o confuga_adm.o chirp_put.o chirp_benchmark.o chirp_distribute.o chirp_status.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[2]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
COMPILE work_queue.o
COMPILE work_queue_catalog.o
COMPILE work_queue_resources.o
ar rv libwork_queue.a work_queue.o work_queue_catalog.o work_queue_resources.o
ar: creating libwork_queue.a
a - work_queue.o
a - work_queue_catalog.o
a - work_queue_resources.o
ranlib libwork_queue.a
COMPILE work_queue_process.o
COMPILE work_queue_watcher.o
COMPILE work_queue_worker.o
work_queue_worker.c: In function 'do_thirdget':
work_queue_worker.c:1113:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if(symlink(path, cached_filename) != 0) {
^
work_queue_worker.c:1117:2: note: here
case WORK_QUEUE_FS_PATH:
^~~~
LINK work_queue_worker
COMPILE work_queue_status.o
LINK work_queue_status
COMPILE work_queue_example.o
LINK work_queue_example
COMPILE work_queue_test_main.o
COMPILE work_queue_test.o
LINK work_queue_test
COMPILE work_queue_test_watch.o
LINK work_queue_test_watch
COMPILE work_queue_priority_test.o
LINK work_queue_priority_test
sed -e "s/SGE_CUSTOM_PARAMETERS//" sge_submit_workers_common > sge_submit_workers
chmod 755 sge_submit_workers
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
SWIG work_queue.i (perl5)
COMPILE work_queue_wrap.o
LINK work_queue.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
SWIG work_queue.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE work_queue_wrap.o
LINK _work_queue.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
cp work_queue.binding.py work_queue.binding.py3
chmod 755 work_queue.binding.py3
/usr/bin/2to3-2.7 -w work_queue.binding.py3
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored work_queue.binding.py3
RefactoringTool: Files that were modified:
RefactoringTool: work_queue.binding.py3
--- work_queue.binding.py3 (original)
+++ work_queue.binding.py3 (refactored)
@@ -785,7 +785,7 @@
work_queue_specify_name(self._work_queue, name)
work_queue_specify_master_mode(self._work_queue, catalog)
- except Exception, e:
+ except Exception as e:
raise Exception('Unable to create internal Work Queue structure: %s' % e)
def __free_queue(self):
SWIG work_queue.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE work_queue_wrap.o
LINK _work_queue.so
cp work_queue_example.py work_queue_example.py3
chmod 755 work_queue_example.py3
/usr/bin/2to3-2.7 -w work_queue_example.py3
RefactoringTool: Skipping optional fixer: buffer
RefactoringTool: Skipping optional fixer: idioms
RefactoringTool: Skipping optional fixer: set_literal
RefactoringTool: Skipping optional fixer: ws_comma
RefactoringTool: Refactored work_queue_example.py3
RefactoringTool: Files that were modified:
RefactoringTool: work_queue_example.py3
--- work_queue_example.py3 (original)
+++ work_queue_example.py3 (refactored)
@@ -19,8 +19,8 @@
port = WORK_QUEUE_DEFAULT_PORT
if len(sys.argv) < 2:
- print "work_queue_example <file1> [file2] [file3] ..."
- print "Each file given on the command line will be compressed using a remote worker."
+ print("work_queue_example <file1> [file2] [file3] ...")
+ print("Each file given on the command line will be compressed using a remote worker.")
sys.exit(1)
# Usually, we can execute the gzip utility by simply typing its name at a
@@ -33,7 +33,7 @@
if not os.path.exists(gzip_path):
gzip_path = "/usr/bin/gzip"
if not os.path.exists(gzip_path):
- print "gzip was not found. Please modify the gzip_path variable accordingly. To determine the location of gzip, from the terminal type: which gzip (usual locations are /bin/gzip and /usr/bin/gzip)"
+ print("gzip was not found. Please modify the gzip_path variable accordingly. To determine the location of gzip, from the terminal type: which gzip (usual locations are /bin/gzip and /usr/bin/gzip)")
sys.exit(1);
# We create the tasks queue using the default port. If this port is already
@@ -42,10 +42,10 @@
try:
q = WorkQueue(port)
except:
- print "Instantiation of Work Queue failed!"
+ print("Instantiation of Work Queue failed!")
sys.exit(1)
- print "listening on port %d..." % q.port
+ print("listening on port %d..." % q.port)
# We create and dispatch a task for each filename given in the argument list
for i in range(1, len(sys.argv)):
@@ -72,19 +72,19 @@
# Once all files has been specified, we are ready to submit the task to the queue.
taskid = q.submit(t)
- print "submitted task (id# %d): %s" % (taskid, t.command)
+ print("submitted task (id# %d): %s" % (taskid, t.command))
- print "waiting for tasks to complete..."
+ print("waiting for tasks to complete...")
while not q.empty():
t = q.wait(5)
if t:
- print "task (id# %d) complete: %s (return code %d)" % (t.id, t.command, t.return_status)
+ print("task (id# %d) complete: %s (return code %d)" % (t.id, t.command, t.return_status))
if t.return_status != 0:
# The task failed. Error handling (e.g., resubmit with new parameters, examine logs, etc.) here
None
#task object will be garbage collected by Python automatically when it goes out of scope
- print "all tasks complete!"
+ print("all tasks complete!")
#work queue object will be garbage collected by Python automatically when it goes out of scope
sys.exit(0)
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
rm work_queue_priority_test.o work_queue_test_watch.o work_queue_test.o work_queue_status.o work_queue_example.o work_queue_worker.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[2]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
COMPILE batch_job.o
COMPILE batch_job_amazon.o
COMPILE batch_job_dryrun.o
COMPILE batch_job_chirp.o
COMPILE batch_job_cluster.o
COMPILE batch_job_blue_waters.o
COMPILE batch_job_condor.o
COMPILE batch_job_local.o
COMPILE batch_job_work_queue.o
COMPILE batch_job_mesos.o
COMPILE mesos_task.o
ar rv libbatch_job.a batch_job.o batch_job_amazon.o batch_job_dryrun.o batch_job_chirp.o batch_job_cluster.o batch_job_blue_waters.o batch_job_condor.o batch_job_local.o batch_job_work_queue.o batch_job_mesos.o mesos_task.o
ar: creating libbatch_job.a
a - batch_job.o
a - batch_job_amazon.o
a - batch_job_dryrun.o
a - batch_job_chirp.o
a - batch_job_cluster.o
a - batch_job_blue_waters.o
a - batch_job_condor.o
a - batch_job_local.o
a - batch_job_work_queue.o
a - batch_job_mesos.o
a - mesos_task.o
ranlib libbatch_job.a
COMPILE work_queue_factory.o
LINK work_queue_factory
cp work_queue_factory work_queue_pool
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[2]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
COMPILE grow.o
COMPILE grow_fuse.o
LINK grow_fuse
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[2]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
COMPILE dag.o
COMPILE dag_node.o
COMPILE dag_file.o
COMPILE dag_variable.o
COMPILE dag_visitors.o
COMPILE dag_resources.o
COMPILE lexer.o
COMPILE parser.o
In file included from parser.c:32:0:
parser.c: In function 'dag_from_file':
/<<PKGBUILDDIR>>/dttools/src/debug.h:110:32: warning: 'name' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define debug cctools_debug
^~~~~~~~~~~~~
parser.c:880:14: note: 'name' was declared here
const char *name;
^~~~
COMPILE parser_jx.o
COMPILE makeflow_summary.o
In file included from /<<PKGBUILDDIR>>/dttools/src/set.h:11:0,
from dag_node.h:12,
from dag.h:10,
from makeflow_summary.c:7:
makeflow_summary.c: In function 'makeflow_summary_create':
/<<PKGBUILDDIR>>/dttools/src/list.h:29:21: warning: 'fn' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define list_find cctools_list_find
^~~~~~~~~~~~~~~~~
makeflow_summary.c:74:14: note: 'fn' was declared here
const char *fn;
^~
COMPILE makeflow_gc.o
COMPILE makeflow_log.o
COMPILE makeflow_wrapper.o
COMPILE makeflow_wrapper_monitor.o
COMPILE makeflow_wrapper_docker.o
COMPILE makeflow_wrapper_enforcement.o
COMPILE makeflow_catalog_reporter.o
COMPILE makeflow_wrapper_umbrella.o
COMPILE makeflow_mounts.o
makeflow_mounts.c: In function 'mount_install_local':
makeflow_mounts.c:107:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
if(copy_symlink(source, cache_path)) {
^
makeflow_mounts.c:111:2: note: here
case FILE_TYPE_DIR:
^~~~
COMPILE makeflow_wrapper_singularity.o
COMPILE makeflow_archive.o
COMPILE makeflow_local_resources.o
COMPILE makeflow.o
makeflow.c: In function 'main':
makeflow.c:1735:7: warning: this statement may fall through [-Wimplicit-fallthrough=]
if(!strcmp(optarg, "throughput")) {
^
makeflow.c:1744:4: note: here
case LONG_OPT_JX:
^~~~
makeflow.c:1745:14: warning: this statement may fall through [-Wimplicit-fallthrough=]
jx_input = 1;
~~~~~~~~~^~~
makeflow.c:1746:4: note: here
case LONG_OPT_JSON:
^~~~
makeflow.c:1766:5: warning: this statement may fall through [-Wimplicit-fallthrough=]
makeflow_wrapper_umbrella_set_spec(umbrella, (const char *)xxstrdup(optarg));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
makeflow.c:1767:4: note: here
case LONG_OPT_MESOS_MASTER:
^~~~
LINK makeflow
COMPILE makeflow_viz.o
LINK makeflow_viz
COMPILE makeflow_analyze.o
LINK makeflow_analyze
COMPILE makeflow_linker.o
makeflow_linker.c: In function 'find_dependencies_for':
makeflow_linker.c:255:37: warning: 'original_name' may be used uninitialized in this function [-Wmaybe-uninitialized]
new_dependency->original_name = original_name;
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
LINK makeflow_linker
COMPILE makeflow_status.o
LINK makeflow_status
rm makeflow_analyze.o makeflow_linker.o makeflow_viz.o makeflow.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[2]: Entering directory '/<<PKGBUILDDIR>>/apps'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[2]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
COMPILE compressed_sequence.o
COMPILE sequence_filter.o
COMPILE sequence.o
COMPILE matrix.o
COMPILE overlap.o
COMPILE align.o
ar rv libsandtools.a compressed_sequence.o sequence_filter.o sequence.o matrix.o overlap.o align.o
ar: creating libsandtools.a
a - compressed_sequence.o
a - sequence_filter.o
a - sequence.o
a - matrix.o
a - overlap.o
a - align.o
ranlib libsandtools.a
COMPILE sand_align_master.o
LINK sand_align_master
COMPILE sand_align_kernel.o
LINK sand_align_kernel
COMPILE sand_filter_master.o
LINK sand_filter_master
COMPILE sand_filter_kernel.o
LINK sand_filter_kernel
COMPILE sand_compress_reads.o
LINK sand_compress_reads
COMPILE sand_uncompress_reads.o
LINK sand_uncompress_reads
rm sand_compress_reads.o sand_uncompress_reads.o sand_align_master.o sand_filter_master.o sand_align_kernel.o sand_filter_kernel.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[2]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
COMPILE allpairs_compare.o
COMPILE allpairs_multicore.o
LINK allpairs_multicore
COMPILE allpairs_master.o
allpairs_master.c: In function 'estimate_run_time':
allpairs_master.c:91:25: warning: 'stoptime' may be used uninitialized in this function [-Wmaybe-uninitialized]
timestamp_t starttime, stoptime;
^~~~~~~~
allpairs_master.c:123:57: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
double t = (double)(stoptime - starttime) / (x * ystop + y + 1) / 1000000;
~~~~~~~~~~^~~
LINK allpairs_master
rm allpairs_master.o allpairs_multicore.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[2]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
COMPILE wavefront.o
LINK wavefront
COMPILE wavefront_master.o
LINK wavefront_master
rm wavefront_master.o wavefront.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[2]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
COMPILE ftp_lite.o
COMPILE error.o
COMPILE radix.o
radix.c: In function 'ftp_lite_radix_encode':
radix.c:62:15: warning: this statement may fall through [-Wimplicit-fallthrough=]
outbuf[j++] = pad;
~~~~~~~~~~~~^~~~~
radix.c:63:2: note: here
case 2:
^~~~
COMPILE login.o
COMPILE network.o
ar rv libftp_lite.a ftp_lite.o error.o radix.o login.o network.o
ar: creating libftp_lite.a
a - ftp_lite.o
a - error.o
a - radix.o
a - login.o
a - network.o
ranlib libftp_lite.a
COMPILE ftp_lite_test.o
LINK ftp_lite_test
COMPILE ftp_lite_copy.o
LINK ftp_lite_copy
rm ftp_lite_test.o ftp_lite_copy.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[2]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
COMPILE rmonitor_helper.o
COMPILE rmonitor_helper_comm.o
COMPILE librmonitor_helper.so
COMPILE piggybacker.o
LINK piggybacker
./piggybacker rmonitor_piggyback.h librmonitor_helper.so
COMPILE resource_monitor.o
resource_monitor.c: In function 'rmonitor_handle_inotify':
resource_monitor.c:748:3: warning: 'evdata' may be used uninitialized in this function [-Wmaybe-uninitialized]
free(evdata);
^~~~~~~~~~~~
resource_monitor.c:723:8: warning: 'finfo' may be used uninitialized in this function [-Wmaybe-uninitialized]
if (finfo == NULL) {
^
COMPILE rmonitor_file_watch.o
LINK resource_monitor
COMPILE rmonitor_poll_example.o
LINK rmonitor_poll_example
COMPILE rmonitor_snapshot.o
LINK rmonitor_snapshot
COMPILE resource_monitor_histograms.o
COMPILE resource_monitor_tools.o
LINK resource_monitor_histograms
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
SWIG rmonitor.i (python)
ln -sf /System/Library/Frameworks/Python.framework .
COMPILE rmonitor_wrap.o
LINK _cResourceMonitor.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[2]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
sed 's%CCTOOLS_VERSION%6.2.10 FINAL%' < weaver.in > weaver.py
chmod 755 weaver.py
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[2]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
sed 's%CCTOOLS_VERSION%6.2.10 FINAL%' < umbrella.py > umbrella
chmod 755 umbrella
# pydoc2/pydoc creates a html file, umbrella.html.
if which pydoc2; then pydoc2 -w umbrella; elif which pydoc; then pydoc -w umbrella; fi
/usr/bin/pydoc2
wrote umbrella.html
if [ -f umbrella.html ]; then mv umbrella.html umbrella_helper.html; fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[2]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
COMPILE deltadb_stream.o
COMPILE deltadb_reduction.o
deltadb_reduction.c: In function 'deltadb_reduction_value':
deltadb_reduction.c:91:9: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
return value;
^~~~~
ar rv libdeltadb.a deltadb_stream.o deltadb_reduction.o
ar: creating libdeltadb.a
a - deltadb_stream.o
a - deltadb_reduction.o
ranlib libdeltadb.a
COMPILE deltadb_query.o
LINK deltadb_query
rm deltadb_query.o
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[2]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
sed 's%CCTOOLS_VERSION%6.2.10 FINAL%' < prune_worker.py | sed 's%CCTOOLS_RELEASE_DATE%%' > prune_worker
chmod 755 prune_worker
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[2]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
mkdir -p api/html
pod2html ../work_queue/src/perl/Work_Queue.pm > api/html/work_queue_perl.html
mkdir -p api/html
pod2html ../work_queue/src/perl/Work_Queue/Task.pm > api/html/work_queue_task_perl.html
mkdir -p api/html
pod2html ../chirp/src/perl/Chirp/Client.pm > api/html/chirp_client_perl.html
mkdir -p api/html
pod2html ../chirp/src/perl/Chirp/Stat.pm > api/html/chirp_stat_perl.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/allpairs_master.m4 > man/allpairs_master.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/allpairs_multicore.m4 > man/allpairs_multicore.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_query.m4 > man/catalog_query.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_server.m4 > man/catalog_server.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_update.m4 > man/catalog_update.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp.m4 > man/chirp.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_benchmark.m4 > man/chirp_benchmark.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_distribute.m4 > man/chirp_distribute.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_fuse.m4 > man/chirp_fuse.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_get.m4 > man/chirp_get.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_put.m4 > man/chirp_put.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_server.m4 > man/chirp_server.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_server_hdfs.m4 > man/chirp_server_hdfs.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_status.m4 > man/chirp_status.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_stream_files.m4 > man/chirp_stream_files.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chroot_package_run.m4 > man/chroot_package_run.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/condor_submit_workers.m4 > man/condor_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/confuga.m4 > man/confuga.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/confuga_adm.m4 > man/confuga_adm.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/deltadb_query.m4 > man/deltadb_query.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/disk_allocator.m4 > man/disk_allocator.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/make_growfs.m4 > man/make_growfs.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow.m4 > man/makeflow.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_analyze.m4 > man/makeflow_analyze.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_blast.m4 > man/makeflow_blast.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_cleanup.m4 > man/makeflow_ec2_cleanup.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_setup.m4 > man/makeflow_ec2_setup.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_graph_log.m4 > man/makeflow_graph_log.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_linker.m4 > man/makeflow_linker.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_monitor.m4 > man/makeflow_monitor.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_status.m4 > man/makeflow_status.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_viz.m4 > man/makeflow_viz.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/maker_wq.m4 > man/maker_wq.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_cp.m4 > man/parrot_cp.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_getacl.m4 > man/parrot_getacl.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_locate.m4 > man/parrot_locate.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_lsalloc.m4 > man/parrot_lsalloc.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_md5.m4 > man/parrot_md5.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_mkalloc.m4 > man/parrot_mkalloc.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_namespace.m4 > man/parrot_namespace.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_package_create.m4 > man/parrot_package_create.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_package_run.m4 > man/parrot_package_run.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_run.m4 > man/parrot_run.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_setacl.m4 > man/parrot_setacl.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_timeout.m4 > man/parrot_timeout.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_whoami.m4 > man/parrot_whoami.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/pbs_submit_workers.m4 > man/pbs_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/replica_exchange.m4 > man/replica_exchange.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor.m4 > man/resource_monitor.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_histograms.m4 > man/resource_monitor_histograms.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_visualizer.m4 > man/resource_monitor_visualizer.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_align_kernel.m4 > man/sand_align_kernel.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_align_master.m4 > man/sand_align_master.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_compress_reads.m4 > man/sand_compress_reads.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_filter_kernel.m4 > man/sand_filter_kernel.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_filter_master.m4 > man/sand_filter_master.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_uncompress_reads.m4 > man/sand_uncompress_reads.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sge_submit_workers.m4 > man/sge_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/split_fasta.m4 > man/split_fasta.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/starch.m4 > man/starch.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/torque_submit_workers.m4 > man/torque_submit_workers.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/wavefront_master.m4 > man/wavefront_master.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/weaver.m4 > man/weaver.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_factory.m4 > man/work_queue_factory.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_graph_log.m4 > man/work_queue_graph_log.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_pool.m4 > man/work_queue_pool.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_status.m4 > man/work_queue_status.html
m4 -DHTML -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_worker.m4 > man/work_queue_worker.html
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/allpairs_master.m4 > man/allpairs_master.1
gzip < man/allpairs_master.1 > man/allpairs_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/allpairs_multicore.m4 > man/allpairs_multicore.1
gzip < man/allpairs_multicore.1 > man/allpairs_multicore.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_query.m4 > man/catalog_query.1
gzip < man/catalog_query.1 > man/catalog_query.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_server.m4 > man/catalog_server.1
gzip < man/catalog_server.1 > man/catalog_server.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/catalog_update.m4 > man/catalog_update.1
gzip < man/catalog_update.1 > man/catalog_update.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp.m4 > man/chirp.1
gzip < man/chirp.1 > man/chirp.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_benchmark.m4 > man/chirp_benchmark.1
gzip < man/chirp_benchmark.1 > man/chirp_benchmark.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_distribute.m4 > man/chirp_distribute.1
gzip < man/chirp_distribute.1 > man/chirp_distribute.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_fuse.m4 > man/chirp_fuse.1
gzip < man/chirp_fuse.1 > man/chirp_fuse.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_get.m4 > man/chirp_get.1
gzip < man/chirp_get.1 > man/chirp_get.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_put.m4 > man/chirp_put.1
gzip < man/chirp_put.1 > man/chirp_put.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_server.m4 > man/chirp_server.1
gzip < man/chirp_server.1 > man/chirp_server.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_server_hdfs.m4 > man/chirp_server_hdfs.1
gzip < man/chirp_server_hdfs.1 > man/chirp_server_hdfs.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_status.m4 > man/chirp_status.1
gzip < man/chirp_status.1 > man/chirp_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chirp_stream_files.m4 > man/chirp_stream_files.1
gzip < man/chirp_stream_files.1 > man/chirp_stream_files.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/chroot_package_run.m4 > man/chroot_package_run.1
gzip < man/chroot_package_run.1 > man/chroot_package_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/condor_submit_workers.m4 > man/condor_submit_workers.1
gzip < man/condor_submit_workers.1 > man/condor_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/confuga.m4 > man/confuga.1
gzip < man/confuga.1 > man/confuga.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/confuga_adm.m4 > man/confuga_adm.1
gzip < man/confuga_adm.1 > man/confuga_adm.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/deltadb_query.m4 > man/deltadb_query.1
gzip < man/deltadb_query.1 > man/deltadb_query.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/disk_allocator.m4 > man/disk_allocator.1
gzip < man/disk_allocator.1 > man/disk_allocator.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/make_growfs.m4 > man/make_growfs.1
gzip < man/make_growfs.1 > man/make_growfs.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow.m4 > man/makeflow.1
gzip < man/makeflow.1 > man/makeflow.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_analyze.m4 > man/makeflow_analyze.1
gzip < man/makeflow_analyze.1 > man/makeflow_analyze.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_blast.m4 > man/makeflow_blast.1
gzip < man/makeflow_blast.1 > man/makeflow_blast.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_cleanup.m4 > man/makeflow_ec2_cleanup.1
gzip < man/makeflow_ec2_cleanup.1 > man/makeflow_ec2_cleanup.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_ec2_setup.m4 > man/makeflow_ec2_setup.1
gzip < man/makeflow_ec2_setup.1 > man/makeflow_ec2_setup.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_graph_log.m4 > man/makeflow_graph_log.1
gzip < man/makeflow_graph_log.1 > man/makeflow_graph_log.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_linker.m4 > man/makeflow_linker.1
gzip < man/makeflow_linker.1 > man/makeflow_linker.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_monitor.m4 > man/makeflow_monitor.1
gzip < man/makeflow_monitor.1 > man/makeflow_monitor.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_status.m4 > man/makeflow_status.1
gzip < man/makeflow_status.1 > man/makeflow_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/makeflow_viz.m4 > man/makeflow_viz.1
gzip < man/makeflow_viz.1 > man/makeflow_viz.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/maker_wq.m4 > man/maker_wq.1
gzip < man/maker_wq.1 > man/maker_wq.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_cp.m4 > man/parrot_cp.1
gzip < man/parrot_cp.1 > man/parrot_cp.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_getacl.m4 > man/parrot_getacl.1
gzip < man/parrot_getacl.1 > man/parrot_getacl.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_locate.m4 > man/parrot_locate.1
gzip < man/parrot_locate.1 > man/parrot_locate.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_lsalloc.m4 > man/parrot_lsalloc.1
gzip < man/parrot_lsalloc.1 > man/parrot_lsalloc.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_md5.m4 > man/parrot_md5.1
gzip < man/parrot_md5.1 > man/parrot_md5.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_mkalloc.m4 > man/parrot_mkalloc.1
gzip < man/parrot_mkalloc.1 > man/parrot_mkalloc.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_namespace.m4 > man/parrot_namespace.1
gzip < man/parrot_namespace.1 > man/parrot_namespace.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_package_create.m4 > man/parrot_package_create.1
gzip < man/parrot_package_create.1 > man/parrot_package_create.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_package_run.m4 > man/parrot_package_run.1
gzip < man/parrot_package_run.1 > man/parrot_package_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_run.m4 > man/parrot_run.1
gzip < man/parrot_run.1 > man/parrot_run.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_setacl.m4 > man/parrot_setacl.1
gzip < man/parrot_setacl.1 > man/parrot_setacl.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_timeout.m4 > man/parrot_timeout.1
gzip < man/parrot_timeout.1 > man/parrot_timeout.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/parrot_whoami.m4 > man/parrot_whoami.1
gzip < man/parrot_whoami.1 > man/parrot_whoami.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/pbs_submit_workers.m4 > man/pbs_submit_workers.1
gzip < man/pbs_submit_workers.1 > man/pbs_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/replica_exchange.m4 > man/replica_exchange.1
gzip < man/replica_exchange.1 > man/replica_exchange.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor.m4 > man/resource_monitor.1
gzip < man/resource_monitor.1 > man/resource_monitor.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_histograms.m4 > man/resource_monitor_histograms.1
gzip < man/resource_monitor_histograms.1 > man/resource_monitor_histograms.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/resource_monitor_visualizer.m4 > man/resource_monitor_visualizer.1
gzip < man/resource_monitor_visualizer.1 > man/resource_monitor_visualizer.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_align_kernel.m4 > man/sand_align_kernel.1
gzip < man/sand_align_kernel.1 > man/sand_align_kernel.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_align_master.m4 > man/sand_align_master.1
gzip < man/sand_align_master.1 > man/sand_align_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_compress_reads.m4 > man/sand_compress_reads.1
gzip < man/sand_compress_reads.1 > man/sand_compress_reads.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_filter_kernel.m4 > man/sand_filter_kernel.1
gzip < man/sand_filter_kernel.1 > man/sand_filter_kernel.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_filter_master.m4 > man/sand_filter_master.1
gzip < man/sand_filter_master.1 > man/sand_filter_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sand_uncompress_reads.m4 > man/sand_uncompress_reads.1
gzip < man/sand_uncompress_reads.1 > man/sand_uncompress_reads.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/sge_submit_workers.m4 > man/sge_submit_workers.1
gzip < man/sge_submit_workers.1 > man/sge_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/split_fasta.m4 > man/split_fasta.1
gzip < man/split_fasta.1 > man/split_fasta.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/starch.m4 > man/starch.1
gzip < man/starch.1 > man/starch.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/torque_submit_workers.m4 > man/torque_submit_workers.1
gzip < man/torque_submit_workers.1 > man/torque_submit_workers.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/wavefront_master.m4 > man/wavefront_master.1
gzip < man/wavefront_master.1 > man/wavefront_master.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/weaver.m4 > man/weaver.1
gzip < man/weaver.1 > man/weaver.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_factory.m4 > man/work_queue_factory.1
gzip < man/work_queue_factory.1 > man/work_queue_factory.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_graph_log.m4 > man/work_queue_graph_log.1
gzip < man/work_queue_graph_log.1 > man/work_queue_graph_log.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_pool.m4 > man/work_queue_pool.1
gzip < man/work_queue_pool.1 > man/work_queue_pool.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_status.m4 > man/work_queue_status.1
gzip < man/work_queue_status.1 > man/work_queue_status.1.gz
m4 -DMAN -DCCTOOLS_VERSION="6.2.10 FINAL" -DCCTOOLS_RELEASE_DATE="" man/work_queue_worker.m4 > man/work_queue_worker.1
gzip < man/work_queue_worker.1 > man/work_queue_worker.1.gz
rm man/parrot_md5.1 man/parrot_cp.1 man/resource_monitor.1 man/makeflow_viz.1 man/makeflow_ec2_setup.1 man/parrot_setacl.1 man/makeflow_ec2_cleanup.1 man/sand_filter_master.1 man/work_queue_status.1 man/disk_allocator.1 man/parrot_lsalloc.1 man/split_fasta.1 man/sand_align_kernel.1 man/chroot_package_run.1 man/makeflow_monitor.1 man/parrot_mkalloc.1 man/makeflow_blast.1 man/weaver.1 man/catalog_query.1 man/confuga_adm.1 man/work_queue_graph_log.1 man/chirp_server.1 man/chirp_server_hdfs.1 man/allpairs_master.1 man/parrot_timeout.1 man/maker_wq.1 man/chirp_put.1 man/wavefront_master.1 man/catalog_server.1 man/chirp_distribute.1 man/pbs_submit_workers.1 man/allpairs_multicore.1 man/chirp_get.1 man/parrot_whoami.1 man/sand_uncompress_reads.1 man/resource_monitor_visualizer.1 man/resource_monitor_histograms.1 man/confuga.1 man/parrot_locate.1 man/chirp_fuse.1 man/sand_filter_kernel.1 man/chirp_benchmark.1 man/sand_compress_reads.1 man/makeflow_graph_log.1 man/make_growfs.1 man/catalog_update.1 man/work_queue_factory.1 man/parrot_package_run.1 man/chirp_stream_files.1 man/condor_submit_workers.1 man/makeflow.1 man/starch.1 man/parrot_namespace.1 man/deltadb_query.1 man/torque_submit_workers.1 man/replica_exchange.1 man/chirp_status.1 man/work_queue_pool.1 man/parrot_run.1 man/parrot_package_create.1 man/parrot_getacl.1 man/makeflow_linker.1 man/sge_submit_workers.1 man/work_queue_worker.1 man/sand_align_master.1 man/makeflow_status.1 man/makeflow_analyze.1 man/chirp.1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# disable the tests for now on upstream's request. they will be reenabled
# once the test suite can properly deal with the buildd environment
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem=makefile --with python2,python3
dh_testroot -a -O--buildsystem=makefile
dh_prep -a -O--buildsystem=makefile
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install -- CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[4]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/apps'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[4]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[4]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[4]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[4]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[4]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[4]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[4]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc'
make[3]: Entering directory '/<<PKGBUILDDIR>>/dttools'
make[4]: Entering directory '/<<PKGBUILDDIR>>/dttools/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp cctools_gpu_autodetect cctools_python catalog_update catalog_server watchdog disk_allocator jx2json catalog_query /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libdttools.a libforce_halt_enospc.so /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp auth.h auth_address.h auth_all.h auth_globus.h auth_hostname.h auth_kerberos.h auth_ticket.h auth_unix.h buffer.h category.h copy_tree.h debug.h hash_table.h histogram.h http_query.h int_sizes.h jx.h jx_match.h link.h md5.h rmonitor_poll.h rmsummary.h timestamp.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/dttools/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/dttools'
make[3]: Entering directory '/<<PKGBUILDDIR>>/batch_job'
make[4]: Entering directory '/<<PKGBUILDDIR>>/batch_job/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp work_queue_factory work_queue_pool /<<PKGBUILDDIR>>/debian/tmp/bin
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libbatch_job.a /<<PKGBUILDDIR>>/debian/tmp/lib
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp batch_job.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools
make[4]: Leaving directory '/<<PKGBUILDDIR>>/batch_job/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/batch_job'
make[3]: Entering directory '/<<PKGBUILDDIR>>/grow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/grow/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 make_growfs
cp grow_fuse make_growfs /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/grow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/grow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/makeflow'
make[4]: Entering directory '/<<PKGBUILDDIR>>/makeflow/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 condor_submit_makeflow makeflow_graph_log makeflow_monitor starch makeflow_linker_perl_driver makeflow_linker_python_driver makeflow_archive_query mf_mesos_scheduler mf_mesos_executor mf_mesos_setting mf-mesos-executor makeflow_ec2_setup makeflow_ec2_cleanup
cp makeflow makeflow_viz makeflow_analyze makeflow_linker makeflow_status condor_submit_makeflow makeflow_graph_log makeflow_monitor starch makeflow_linker_perl_driver makeflow_linker_python_driver makeflow_archive_query mf_mesos_scheduler mf_mesos_executor mf_mesos_setting mf-mesos-executor makeflow_ec2_setup makeflow_ec2_cleanup /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/cctools/
cp style.xml /<<PKGBUILDDIR>>/debian/tmp/share/cctools/makeflow-cytoscape-style.xml
make[4]: Leaving directory '/<<PKGBUILDDIR>>/makeflow/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/makeflow'
make[3]: Entering directory '/<<PKGBUILDDIR>>/work_queue'
make[4]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp work_queue.pm work_queue.so /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Work_Queue
cp Work_Queue.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp Work_Queue/Task.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Work_Queue
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
chmod 755 work_queue_example.pl
cp work_queue_example.pl /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
chmod 755 work_queue_example.py
cp work_queue.py _work_queue.so /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python3.6/site-packages
cp work_queue.py _work_queue.so /<<PKGBUILDDIR>>/debian/tmp/lib/python3.6/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.py3 /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 work_queue_submit_common condor_submit_workers sge_submit_workers torque_submit_workers pbs_submit_workers slurm_submit_workers work_queue_graph_log
cp work_queue_worker work_queue_status work_queue_example work_queue_submit_common condor_submit_workers sge_submit_workers torque_submit_workers pbs_submit_workers slurm_submit_workers work_queue_graph_log /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libwork_queue.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp work_queue_example.c /<<PKGBUILDDIR>>/debian/tmp/doc/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp work_queue.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/work_queue/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/work_queue'
make[3]: Entering directory '/<<PKGBUILDDIR>>/apps'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 makeflow_blast/makeflow_blast makeflow_bwa/makeflow_bwa makeflow_gatk/makeflow_gatk makeflow_blasr/makeflow_blasr wq_maker/wq_maker
cp makeflow_blast/makeflow_blast makeflow_bwa/makeflow_bwa makeflow_gatk/makeflow_gatk makeflow_blasr/makeflow_blasr wq_maker/wq_maker /<<PKGBUILDDIR>>/debian/tmp/bin/
make[3]: Leaving directory '/<<PKGBUILDDIR>>/apps'
make[3]: Entering directory '/<<PKGBUILDDIR>>/sand'
make[4]: Entering directory '/<<PKGBUILDDIR>>/sand/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
chmod 755 sand_align_master sand_align_kernel sand_filter_master sand_filter_kernel sand_compress_reads sand_uncompress_reads sand_runCA_5.4 sand_runCA_6.1 sand_runCA_7.0
cp sand_align_master sand_align_kernel sand_filter_master sand_filter_kernel sand_compress_reads sand_uncompress_reads sand_runCA_5.4 sand_runCA_6.1 sand_runCA_7.0 /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/sand/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/sand'
make[3]: Entering directory '/<<PKGBUILDDIR>>/allpairs'
make[4]: Entering directory '/<<PKGBUILDDIR>>/allpairs/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp allpairs_multicore allpairs_master /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/allpairs/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/allpairs'
make[3]: Entering directory '/<<PKGBUILDDIR>>/wavefront'
make[4]: Entering directory '/<<PKGBUILDDIR>>/wavefront/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp wavefront wavefront_master /<<PKGBUILDDIR>>/debian/tmp/bin/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/wavefront/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/wavefront'
make[3]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite'
make[4]: Entering directory '/<<PKGBUILDDIR>>/ftp_lite/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libftp_lite.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp ftp_lite.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/ftp_lite'
make[3]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor'
make[4]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
chmod 755 ResourceMonitor.py
cp ResourceMonitor.py _cResourceMonitor.so cResourceMonitor.py /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp rmonitor_allocations_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp resource_monitor piggybacker rmonitor_poll_example rmonitor_snapshot resource_monitor_histograms /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp librmonitor_helper.so /<<PKGBUILDDIR>>/debian/tmp/lib/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/resource_monitor'
make[3]: Entering directory '/<<PKGBUILDDIR>>/chirp'
make[4]: Entering directory '/<<PKGBUILDDIR>>/chirp/src'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/perl'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2
cp CChirp.pm CChirp.so /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
cp Chirp/Client.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
cp Chirp/Stat.pm /<<PKGBUILDDIR>>/debian/tmp/lib/perl5/site_perl/5.26.2/Chirp
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
chmod 755 chirp_perl_example.pl
cp chirp_perl_example.pl /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/perl'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp Chirp.py _CChirp.so /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp chirp_python_example.py /<<PKGBUILDDIR>>/debian/tmp/doc/
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python'
make[5]: Entering directory '/<<PKGBUILDDIR>>/chirp/src/python3'
make[5]: Nothing to be done for 'install'.
make[5]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src/python3'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
if [ -f /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server ]; then mv /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server /<<PKGBUILDDIR>>/debian/tmp/bin/chirp_server.old; fi
chmod 755 chirp_audit_cluster chirp_server_hdfs
cp chirp chirp_get chirp_put chirp_server chirp_status chirp_benchmark chirp_stream_files chirp_fuse chirp_distribute confuga_adm chirp_audit_cluster chirp_server_hdfs /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib
cp libchirp.a libconfuga.a /<<PKGBUILDDIR>>/debian/tmp/lib/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/include/cctools
cp chirp_global.h chirp_multi.h chirp_reli.h chirp_client.h chirp_stream.h chirp_protocol.h chirp_matrix.h chirp_types.h chirp_recursive.h confuga.h /<<PKGBUILDDIR>>/debian/tmp/include/cctools/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/cctools/chirp/
cp -r ../tools/workflows/ /<<PKGBUILDDIR>>/debian/tmp/share/cctools/chirp/
make[4]: Leaving directory '/<<PKGBUILDDIR>>/chirp/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/chirp'
make[3]: Entering directory '/<<PKGBUILDDIR>>/weaver'
make[4]: Entering directory '/<<PKGBUILDDIR>>/weaver/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp -r weaver /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages
cp weaver.py /<<PKGBUILDDIR>>/debian/tmp/bin/weaver
make[4]: Leaving directory '/<<PKGBUILDDIR>>/weaver/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/weaver'
make[3]: Entering directory '/<<PKGBUILDDIR>>/umbrella'
make[4]: Entering directory '/<<PKGBUILDDIR>>/umbrella/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp umbrella /<<PKGBUILDDIR>>/debian/tmp/bin/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
if [ -f umbrella_helper.html ]; then cp umbrella_helper.html /<<PKGBUILDDIR>>/debian/tmp/doc/; fi
make[4]: Leaving directory '/<<PKGBUILDDIR>>/umbrella/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/umbrella'
make[3]: Entering directory '/<<PKGBUILDDIR>>/deltadb'
make[4]: Entering directory '/<<PKGBUILDDIR>>/deltadb/src'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
cp deltadb_query /<<PKGBUILDDIR>>/debian/tmp/bin
make[4]: Leaving directory '/<<PKGBUILDDIR>>/deltadb/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/deltadb'
make[3]: Entering directory '/<<PKGBUILDDIR>>/prune'
make[4]: Entering directory '/<<PKGBUILDDIR>>/prune/src'
#cp prune_server /<<PKGBUILDDIR>>/debian/tmp/bin/prune_server
mv prune_worker /<<PKGBUILDDIR>>/debian/tmp/bin/prune_worker
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/prune
cp -r prune/* /<<PKGBUILDDIR>>/debian/tmp/lib/python2.7/site-packages/prune
make[4]: Leaving directory '/<<PKGBUILDDIR>>/prune/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/prune'
make[3]: Entering directory '/<<PKGBUILDDIR>>/doc'
mkdir -p api/html
# doxygen cctools.doxygen.config
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc/man
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc/images
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/share/man/man1
cp *.html manual.css /<<PKGBUILDDIR>>/debian/tmp/doc
if [ -f man/chirp.html ]; then cp man/*.html /<<PKGBUILDDIR>>/debian/tmp/doc/man; fi
if [ -f man/chirp.1.gz ]; then cp man/*.1.gz /<<PKGBUILDDIR>>/debian/tmp/share/man/man1; fi
if [ -d api ]; then cp -rp api /<<PKGBUILDDIR>>/debian/tmp/doc; fi
if [ -d images ]; then cp images/* /<<PKGBUILDDIR>>/debian/tmp/doc/images; fi
make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc'
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/bin
for file in cygwin1.dll cyggcc_s-1.dll cygintl-8.dll cygreadline7.dll cygncursesw-10.dll cygiconv-2.dll cygattr-1.dll sh.exe ; do if [ -f /bin/$file ] ; then cp /bin/$file /<<PKGBUILDDIR>>/debian/tmp/bin/ ; fi ; done
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/etc
cp config.mk /<<PKGBUILDDIR>>/debian/tmp/etc/
mkdir -p /<<PKGBUILDDIR>>/debian/tmp/doc
cp COPYING /<<PKGBUILDDIR>>/debian/tmp/doc/
cp README /<<PKGBUILDDIR>>/debian/tmp/doc/
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
# make extensions for other supported python versions
if [ -n "" ]; then \
for pyver in ; do \
CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wno-unused-result" TWOTOTHREE=/usr/bin/2to3-2.7 PYTHON3=/usr/bin/python${pyver} ./configure.rerun ; \
make -B -C work_queue/src/python3 install CCTOOLS_INSTALL_DIR=/<<PKGBUILDDIR>>/debian/tmp ; \
done ; \
fi
# for now remove the 'apps' scripts till upstream confirms that the language
# extension can be removed
rm -f debian/tmp/bin/*.py
# fix permissions
find debian/tmp/lib -name '*.py' -exec chmod 644 {} \;
# remove undesired pieces
rm debian/tmp/doc/COPYING
# upstream says it should not go into the page
rm debian/tmp/bin/watchdog
# HDFS helpers are useless without HDFS in Debian
rm debian/tmp/bin/*_hdfs
# newer doxygen puts jquery copy
#-rm debian/tmp/doc/api/html/jquery.js
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a -O--buildsystem=makefile
dh_installdocs -a -O--buildsystem=makefile
dh_installchangelogs -a -O--buildsystem=makefile
dh_installman -a -O--buildsystem=makefile
dh_python2 -a -O--buildsystem=makefile
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_python3 -a -O--buildsystem=makefile
I: dh_python3 fs:85: renaming debian/python3-workqueue/usr/lib/python3.6/site-packages/_work_queue.so to debian/python3-workqueue/usr/lib/python3.6/site-packages/_work_queue.cpython-36m-arm-linux-gnueabihf.so
dh_perl -a -O--buildsystem=makefile
dh_link -a -O--buildsystem=makefile
dh_strip_nondeterminism -a -O--buildsystem=makefile
dh_compress -a -O--buildsystem=makefile
dh_fixperms -a -O--buildsystem=makefile
dh_missing -a -O--buildsystem=makefile
dh_strip -a -O--buildsystem=makefile
dh_makeshlibs -a -O--buildsystem=makefile
dh_shlibdeps -a -O--buildsystem=makefile
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libtinfo.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libncurses.so.6 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/coop-computing-tools/usr/bin/chirp was not linked against libhistory.so.7 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=makefile
dh_gencontrol -a -O--buildsystem=makefile
dpkg-gencontrol: warning: Depends field of package coop-computing-tools-dev: unknown substitution variable ${shlibs:Depends}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package coop-computing-tools: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Provides}
dpkg-gencontrol: warning: package python3-workqueue: unused substitution variable ${python3:Versions}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Provides}
dpkg-gencontrol: warning: package python-workqueue: unused substitution variable ${python:Versions}
dpkg-gencontrol: warning: package coop-computing-tools: unused substitution variable ${perl:Depends}
dh_md5sums -a -O--buildsystem=makefile
dh_builddeb -a -O--buildsystem=makefile
dpkg-deb: building package 'coop-computing-tools-dev' in '../coop-computing-tools-dev_6.2.10-1_armhf.deb'.
dpkg-deb: building package 'coop-computing-tools' in '../coop-computing-tools_6.2.10-1_armhf.deb'.
dpkg-deb: building package 'python-workqueue-dbgsym' in '../python-workqueue-dbgsym_6.2.10-1_armhf.deb'.
dpkg-deb: building package 'python3-workqueue-dbgsym' in '../python3-workqueue-dbgsym_6.2.10-1_armhf.deb'.
dpkg-deb: building package 'python3-workqueue' in '../python3-workqueue_6.2.10-1_armhf.deb'.
dpkg-deb: building package 'python-workqueue' in '../python-workqueue_6.2.10-1_armhf.deb'.
dpkg-deb: building package 'coop-computing-tools-dbgsym' in '../coop-computing-tools-dbgsym_6.2.10-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../cctools_6.2.10-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build cctools-6.2.10
dpkg-source: info: using options from cctools-6.2.10/debian/source/options: --extend-diff-ignore=\.orig$ --compression=xz
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-07-04T07:03:12Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
cctools_6.2.10-1_armhf.changes:
-------------------------------
Format: 1.8
Date: Thu, 28 Jun 2018 15:35:58 +0100
Source: cctools
Binary: coop-computing-tools coop-computing-tools-dev coop-computing-tools-doc python-workqueue python3-workqueue
Architecture: armhf
Version: 6.2.10-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Alastair McKinstry <mckinstry@debian.org>
Description:
coop-computing-tools - cooperative computing tools
coop-computing-tools-dev - libraries and header files for coop-computing-tools
coop-computing-tools-doc - documentation for coop-computing-tools
python-workqueue - cooperative computing tools work queue Python bindings
python3-workqueue - cooperative computing tools work queue Python3 bindings
Changes:
cctools (6.2.10-1) unstable; urgency=medium
.
* New upstream release
* Use xz compression for pkg
* Add headers to patches
* Build with support for python3.6, python3.7
Checksums-Sha1:
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Files:
93f04ba8db681c213c20fba2d2a8f359 10542 utils optional cctools_6.2.10-1_armhf.buildinfo
ef945641f860f8c7679fea74788e5fe0 8705984 debug optional coop-computing-tools-dbgsym_6.2.10-1_armhf.deb
2f9c067214624cf6257781d750b0cea5 362480 libs optional coop-computing-tools-dev_6.2.10-1_armhf.deb
4ec7ba7b179ffc981ad3207bb472b675 1243208 utils optional coop-computing-tools_6.2.10-1_armhf.deb
fc4ef841968fba7f27fe3e472ac2c3e2 1043316 debug optional python-workqueue-dbgsym_6.2.10-1_armhf.deb
816ab312519540ca86625e859084e714 305408 python optional python-workqueue_6.2.10-1_armhf.deb
f33331f6fe52bd03e8d00a602d5cc36f 505244 debug optional python3-workqueue-dbgsym_6.2.10-1_armhf.deb
327bdd060c34e68f357670982d71560e 164384 python optional python3-workqueue_6.2.10-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
coop-computing-tools-dbgsym_6.2.10-1_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 8705984 bytes: control archive=2380 bytes.
2022 bytes, 12 lines control
4346 bytes, 41 lines md5sums
Package: coop-computing-tools-dbgsym
Source: cctools
Version: 6.2.10-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 10357
Depends: coop-computing-tools (= 6.2.10-1)
Section: debug
Priority: optional
Description: debug symbols for coop-computing-tools
Build-Ids: 01e8b27cafee0ea2564ba2cc0e4d74fddc610ca3 066adb8bd30829da1e374722e6d4934948f8eece 1a3ce2c2cfab691546c1c2abd1427c6ba49b44e1 2261dd49828c45ad1e911858c8bb20a4273651ae 2884ab52170b688a10815057aa06d92f6f3e2ce9 29984faaacf0d74bf16b5576faf2aa260cb83226 2d297495fb6105513237e02af6f6bfba14a9c86b 30a08ae3a21785329e630a1441d7aba3e0834b08 32f19c97d92257336ae6401c5b11ef324fd9c8a3 4268f7c105d1f586b559728fad88f2c7c98e72e2 4b4d6f155bfdf043d2452b280991669d992c917b 512bf8b633e113f7a62d2bde6c5b6f6b4e3b0614 64bf60080ec7d819f63159ced772818a851aa042 70bd2d6625a9fbc49f167ed351e3b86c2ec6f84f 756a67c4adcbdb94a753ebdbec36b4d956b43ea5 76f85f8a201f570435425261727fec51228747c4 790152801ee7ebf26eb7045cfac9333658661977 7c1b94fb279797a051c9a4fb9f02fdd2610a2041 883d1550753af9dd79701ae09be3b60d520a7ec2 8fb70f095cce00681d791de22de6019703828324 920894ca642f5949982e2d54e609db39556226e1 9210a06deb18d458aabdaa02479429cd79e979df 96d3264c8b4e8334e4f3e7519ae71a5a4a4760eb 9bac80886813ef44f1a4a4f7956917052f93d33a 9ffec11f02a90b7c9655b69aa759949b0faa119f a09136720b2af081f93c69c678c560eeefe8b80a acf47b54793f87722ff589e582e6e116f52ccd5e b2c28bf405bf306ff732cc08f19e3a82b9812b04 b5cb3135132a36184f9565848fab27658913ff90 c6d01e42ae54eb29895e845d1b796c69ae884f26 c9cce427bd483648142a17d55f479c60792a4eb5 dad3c43871360480d447eebc20c88d6e46d7799e db993af5a1c1b5bc0fcb3bb04d2f95e09264a2a6 dc42806fea29342fb4e8765cffa037557609ce8d dccfdc91e57731af6dac631f42a0663107c56290 f980be9f10d40d4ad388c919e81ad7cc8e933cb0 fd394ffa5960b40ce8b80072d0cc7294658b3ff3 fd46eff4c87b522984172cda2b8f46bb1a7cbbb8 fd756a23a23e1c698284c999ac44f17438ad04ef fe376006a71aa14f4c8a41fdbcaf74dba2f3f164 ff8354fbe87a853ace1e2388926aa27727ba9cff
drwxr-xr-x root/root 0 2018-06-28 14:35 ./
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/01/
-rw-r--r-- root/root 565860 2018-06-28 14:35 ./usr/lib/debug/.build-id/01/e8b27cafee0ea2564ba2cc0e4d74fddc610ca3.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 158648 2018-06-28 14:35 ./usr/lib/debug/.build-id/06/6adb8bd30829da1e374722e6d4934948f8eece.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/1a/
-rw-r--r-- root/root 62844 2018-06-28 14:35 ./usr/lib/debug/.build-id/1a/3ce2c2cfab691546c1c2abd1427c6ba49b44e1.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/22/
-rw-r--r-- root/root 214072 2018-06-28 14:35 ./usr/lib/debug/.build-id/22/61dd49828c45ad1e911858c8bb20a4273651ae.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/28/
-rw-r--r-- root/root 145848 2018-06-28 14:35 ./usr/lib/debug/.build-id/28/84ab52170b688a10815057aa06d92f6f3e2ce9.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/29/
-rw-r--r-- root/root 73560 2018-06-28 14:35 ./usr/lib/debug/.build-id/29/984faaacf0d74bf16b5576faf2aa260cb83226.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/2d/
-rw-r--r-- root/root 640104 2018-06-28 14:35 ./usr/lib/debug/.build-id/2d/297495fb6105513237e02af6f6bfba14a9c86b.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/30/
-rw-r--r-- root/root 310084 2018-06-28 14:35 ./usr/lib/debug/.build-id/30/a08ae3a21785329e630a1441d7aba3e0834b08.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/32/
-rw-r--r-- root/root 508384 2018-06-28 14:35 ./usr/lib/debug/.build-id/32/f19c97d92257336ae6401c5b11ef324fd9c8a3.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/42/
-rw-r--r-- root/root 155300 2018-06-28 14:35 ./usr/lib/debug/.build-id/42/68f7c105d1f586b559728fad88f2c7c98e72e2.debug
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/lib/debug/.build-id/4b/
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lrwxrwxrwx root/root 0 2018-06-28 14:35 ./usr/share/doc/coop-computing-tools-dbgsym -> coop-computing-tools
coop-computing-tools-dev_6.2.10-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 362480 bytes: control archive=1812 bytes.
526 bytes, 14 lines control
2900 bytes, 44 lines md5sums
Package: coop-computing-tools-dev
Source: cctools
Version: 6.2.10-1
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 1784
Section: libs
Priority: optional
Homepage: https://ccl.cse.nd.edu/software/
Description: libraries and header files for coop-computing-tools
These tools are a collection of software that help users to share resources in
a complex, heterogeneous, and unreliable computing environment.
.
This package provides static libraries and header files for development.
drwxr-xr-x root/root 0 2018-06-28 14:35 ./
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coop-computing-tools_6.2.10-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 1243208 bytes: control archive=5012 bytes.
1912 bytes, 34 lines control
9855 bytes, 149 lines md5sums
Package: coop-computing-tools
Source: cctools
Version: 6.2.10-1
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 9868
Depends: libc6 (>= 2.6), libfuse2 (>= 2.8), libglobus-common0 (>= 17), libglobus-gss-assist3 (>= 11), libglobus-gssapi-gsi4 (>= 13), libgomp1 (>= 4.2.1), libncurses6 (>= 6), libreadline7 (>= 6.0), libsqlite3-0 (>= 3.7.15), libtinfo6 (>= 6), zlib1g (>= 1:1.2.0), python:any, python
Suggests: coop-computing-tools-doc, condor, gridengine-client
Section: utils
Priority: optional
Homepage: https://ccl.cse.nd.edu/software/
Description: cooperative computing tools
This is a collection of software that help users to share resources in a
complex, heterogeneous, and unreliable computing environment. This includes:
.
* Chirp: A personal filesystem and I/O protocol that allows unprivileged users
to share space securely, efficiently, and conveniently. When combined
with Parrot, Chirp allows users to create custom wide-area
distributed filesystems.
* Parrot: A transparent user-level virtual filesystem that allows any ordinary
program to be attached to a remote storage device such as an FTP
server or a Chirp server.
* Makeflow: A workflow system for parallel and distributed computing that uses
a language very similar to Make.
* Work Queue: A system and API for building master-worker style programs that
scale up to thousands of processors.
* All Pairs: A computational abstraction for running very large Cartesian
products.
* Wavefront: A computational abstraction for running very large dynamic
programming problems.
* The Fault Tolerant Shell: A high-level programming language that allows
users to combine the ease of shell scripting, the power of distributed
programming, and the precision of compiled languages. Basically,
parallel programming and exception handling for scripts.
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lrwxrwxrwx root/root 0 2018-06-28 14:35 ./usr/share/man/man1/chirp_audit_cluster.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root 0 2018-06-28 14:35 ./usr/share/man/man1/makeflow_log_parser.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root 0 2018-06-28 14:35 ./usr/share/man/man1/parrot_identity_box.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root 0 2018-06-28 14:35 ./usr/share/man/man1/sand_runCA.1.gz -> coop-computing-tools.1.gz
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lrwxrwxrwx root/root 0 2018-06-28 14:35 ./usr/share/man/man1/starch.bin.1.gz -> coop-computing-tools.1.gz
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python-workqueue-dbgsym_6.2.10-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 1043316 bytes: control archive=648 bytes.
451 bytes, 12 lines control
318 bytes, 3 lines md5sums
Package: python-workqueue-dbgsym
Source: cctools
Version: 6.2.10-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 1232
Depends: python-workqueue (= 6.2.10-1)
Section: debug
Priority: optional
Description: debug symbols for python-workqueue
Build-Ids: 2ca0f026572b413fac3a77246624ccb7bdbd0868 3e4769d75412ef291b89889f1a0296bfb198a8a9 95238ca9d1bab7540628341047eb79e170bb3fc7
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drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-06-28 14:35 ./usr/share/doc/python-workqueue-dbgsym -> python-workqueue
python-workqueue_6.2.10-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 305408 bytes: control archive=2012 bytes.
689 bytes, 14 lines control
3329 bytes, 40 lines md5sums
166 bytes, 9 lines * postinst #!/bin/sh
271 bytes, 14 lines * prerm #!/bin/sh
Package: python-workqueue
Source: cctools
Version: 6.2.10-1
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 1735
Depends: libc6 (>= 2.4), libglobus-common0 (>= 17), libglobus-gss-assist3 (>= 11), libglobus-gssapi-gsi4 (>= 13), zlib1g (>= 1:1.2.0), python (<< 2.8), python (>= 2.7), python:any (>= 2.6.6-7~)
Section: python
Priority: optional
Homepage: https://ccl.cse.nd.edu/software/
Description: cooperative computing tools work queue Python bindings
CCTools's Work Queue is a system and API for building master-worker style
programs that scale up to thousands of processors. This package provides
bindings to access this system from Python.
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drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/share/
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-rw-r--r-- root/root 2574 2018-06-28 14:35 ./usr/share/doc/python-workqueue/copyright
python3-workqueue-dbgsym_6.2.10-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 505244 bytes: control archive=536 bytes.
371 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: python3-workqueue-dbgsym
Source: cctools
Version: 6.2.10-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 595
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Section: debug
Priority: optional
Description: debug symbols for python3-workqueue
Build-Ids: 18d651aeb350ffa0b24f7ae3db4c0d116d913646
drwxr-xr-x root/root 0 2018-06-28 14:35 ./
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drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-06-28 14:35 ./usr/share/doc/python3-workqueue-dbgsym -> python3-workqueue
python3-workqueue_6.2.10-1_armhf.deb
------------------------------------
new Debian package, version 2.0.
size 164384 bytes: control archive=1136 bytes.
631 bytes, 14 lines control
351 bytes, 4 lines md5sums
169 bytes, 9 lines * postinst #!/bin/sh
409 bytes, 12 lines * prerm #!/bin/sh
Package: python3-workqueue
Source: cctools
Version: 6.2.10-1
Architecture: armhf
Maintainer: Alastair McKinstry <mckinstry@debian.org>
Installed-Size: 772
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Section: python
Priority: optional
Homepage: https://ccl.cse.nd.edu/software/
Description: cooperative computing tools work queue Python3 bindings
CCTools's Work Queue is a system and API for building master-worker style
programs that scale up to thousands of processors. This package provides
bindings to access this system from Python3.
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-rw-r--r-- root/root 170614 2018-06-28 14:35 ./usr/lib/python3/dist-packages/work_queue.py
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/share/
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-06-28 14:35 ./usr/share/doc/python3-workqueue/
-rw-r--r-- root/root 2890 2018-06-28 14:35 ./usr/share/doc/python3-workqueue/changelog.Debian.gz
-rw-r--r-- root/root 2574 2018-06-28 14:35 ./usr/share/doc/python3-workqueue/copyright
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 206160
Build-Time: 286
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 778
Job: cctools_6.2.10-1
Machine Architecture: armhf
Package: cctools
Package-Time: 1094
Source-Version: 6.2.10-1
Space: 206160
Status: successful
Version: 6.2.10-1
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Finished at 2018-07-04T07:03:12Z
Build needed 00:18:14, 206160k disk space