bioawk →
1.0-4 →
armhf → 2021-08-23 17:48:10
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| bioawk 1.0-4 (armhf) Mon, 23 Aug 2021 17:42:43 +0000 |
+==============================================================================+
Package: bioawk
Version: 1.0-4
Source Version: 1.0-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-22a02604-5019-4d98-9043-e87008bf1d7e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.3 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.3 MB]
Fetched 25.6 MB in 25s (1013 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bioawk' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bioawk.git
Please use:
git clone https://salsa.debian.org/med-team/bioawk.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 79.4 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main bioawk 1.0-4 (dsc) [2025 B]
Get:2 http://172.17.0.1/private bookworm-staging/main bioawk 1.0-4 (tar) [72.1 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main bioawk 1.0-4 (diff) [5268 B]
Fetched 79.4 kB in 0s (481 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bioawk-yLFKP2/bioawk-1.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bioawk-yLFKP2' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-1xZE8E/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-1xZE8E/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-1xZE8E/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2850 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), bison, libz-dev
Filtered Build-Depends: debhelper-compat (= 13), bison, libz-dev
dpkg-deb: building package 'sbuild-build-depends-bioawk-dummy' in '/<<BUILDDIR>>/resolver-1xZE8E/apt_archive/sbuild-build-depends-bioawk-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bioawk-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ Sources [501 B]
Get:5 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ Packages [581 B]
Fetched 2415 B in 1s (3346 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bioawk build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bison bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bison-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bison bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sbuild-build-depends-bioawk-dummy sensible-utils
zlib1g-dev
0 upgraded, 34 newly installed, 0 to remove and 18 not upgraded.
Need to get 18.7 MB of archives.
After this operation, 67.8 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-1xZE8E/apt_archive ./ sbuild-build-depends-bioawk-dummy 0.invalid.0 [868 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.36.1-8 [137 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf bison armhf 2:3.7.6+dfsg-1 [1049 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.4.1 [191 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.4.1 [1039 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up bsdextrautils (2.36.1-8) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
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Setting up autotools-dev (20180224.1+nmu1) ...
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Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
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Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-6) ...
Setting up bison (2:3.7.6+dfsg-1) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up debhelper (13.4.1) ...
Setting up sbuild-build-depends-bioawk-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-13+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bison_2:3.7.6+dfsg-1 bsdextrautils_2.36.1-8 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.4.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-8 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-2 libcrypt-dev_1:4.4.18-4 libcrypt1_1:4.4.18-4 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.4.1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libext2fs2_1.46.2-2 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-6 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-5 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-6 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.0-5 libisl23_0.23-1 libk5crypto3_1.18.3-6 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-6 libkrb5support0_1.18.3-6 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-3 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-8 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-2 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-9 libpam-modules-bin_1.4.0-9 libpam-runtime_1.4.0-9 libpam0g_1.4.0-9 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-4+deb11u1 libpipeline1_1.5.3-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.36.1-8 libsqlite3-0_3.34.1-3 libss2_1.46.2-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-6+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-6+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-8 libxml2_2.9.10+dfsg-6.7 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.2-2 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-8 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-4+deb11u1 perl-base_5.32.1-4+deb11u1 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-bioawk-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-7 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-8 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.QZnei1h3/trustedkeys.kbx': General error
gpgv: Signature made Wed Mar 17 18:01:06 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bioawk_1.0-4.dsc
dpkg-source: info: extracting bioawk in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking bioawk_1.0.orig.tar.gz
dpkg-source: info: unpacking bioawk_1.0-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makefile.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying cross.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-22a02604-5019-4d98-9043-e87008bf1d7e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bioawk
dpkg-buildpackage: info: source version 1.0-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
make -j4 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -fr a.out *.o *.obj maketab maketab.exe *.bb *.bbg *.da *.gcov *.gcno *.gcda awk ytab.* proctab.c *.dSYM
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f y.tab.h y.tab.c
rm -f bioawk maketab
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/bioawk.substvars debian/files
rm -fr -- debian/bioawk/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_build -a
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
bison -y -d awkgram.y
bison -y -d awkgram.y
awkgram.y: warning: 43 shift/reduce conflicts [-Wconflicts-sr]
awkgram.y: warning: 85 reduce/reduce conflicts [-Wconflicts-rr]
awkgram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
awkgram.y: warning: 43 shift/reduce conflicts [-Wconflicts-sr]
awkgram.y: warning: 85 reduce/reduce conflicts [-Wconflicts-rr]
awkgram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
cp y.tab.c ytab.c
cp y.tab.h ytab.h
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ytab.c
cp y.tab.c ytab.c
cp y.tab.h ytab.h
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ytab.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o b.o b.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parse.o parse.c
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 maketab.c -o maketab -Wl,-z,relro -Wl,-z,now
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tran.o tran.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lib.o lib.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o run.o run.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lex.o lex.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addon.o addon.c
./maketab >proctab.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proctab.o proctab.c
gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security ytab.o b.o main.o parse.o proctab.o tran.o lib.o run.o lex.o addon.o -o bioawk -lm -lz -Wl,-z,relro -Wl,-z,now
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
rm -fr -- /tmp/dh-xdg-rundir-lFQHRPIE
create-stamp debian/debhelper-build-stamp
dh_prep -a
rm -f -- debian/bioawk.substvars
rm -fr -- debian/.debhelper/generated/bioawk/ debian/bioawk/ debian/tmp/
dh_auto_install -a
install -d /<<PKGBUILDDIR>>/debian/bioawk
dh_install -a
install -d debian/bioawk/usr/bin
cp --reflink=auto -a ./bioawk debian/bioawk/usr/bin/
install -d debian/.debhelper/generated/bioawk
dh_installdocs -a
install -d debian/bioawk/usr/share/doc/bioawk
install -p -m0644 debian/copyright debian/bioawk/usr/share/doc/bioawk/copyright
dh_installchangelogs -a
install -p -m0644 debian/changelog debian/bioawk/usr/share/doc/bioawk/changelog.Debian
dh_installman -a
install -d debian/bioawk/usr/share/man/man1/
install -p -m0644 ./debian/bioawk.1 debian/bioawk/usr/share/man/man1/bioawk.1
man-recode --to-code UTF-8 --suffix .dh-new debian/bioawk/usr/share/man/man1/bioawk.1
mv debian/bioawk/usr/share/man/man1/bioawk.1.dh-new debian/bioawk/usr/share/man/man1/bioawk.1
chmod 0644 -- debian/bioawk/usr/share/man/man1/bioawk.1
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
cd debian/bioawk
chmod a-x usr/share/doc/bioawk/changelog.Debian usr/share/man/man1/bioawk.1
gzip -9nf usr/share/doc/bioawk/changelog.Debian usr/share/man/man1/bioawk.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a
find debian/bioawk ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/bioawk/usr/share/doc -type f -a -true -a ! -regex 'debian/bioawk/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/bioawk/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/bioawk/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/bioawk -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/bioawk/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing -a
dh_dwz -a -a
dwz -- debian/bioawk/usr/bin/bioawk
dh_strip -a -a
install -d debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/50
objcopy --only-keep-debug --compress-debug-sections debian/bioawk/usr/bin/bioawk debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/50/ce92e57a8d85966592c8d11130408e7380dbad.debug
chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/50/ce92e57a8d85966592c8d11130408e7380dbad.debug
strip --remove-section=.comment --remove-section=.note debian/bioawk/usr/bin/bioawk
objcopy --add-gnu-debuglink debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/50/ce92e57a8d85966592c8d11130408e7380dbad.debug debian/bioawk/usr/bin/bioawk
install -d debian/.debhelper/bioawk/dbgsym-root/usr/share/doc
ln -s bioawk debian/.debhelper/bioawk/dbgsym-root/usr/share/doc/bioawk-dbgsym
dh_makeshlibs -a -a
rm -f debian/bioawk/DEBIAN/shlibs
dh_shlibdeps -a -a
install -d debian/bioawk/DEBIAN
dpkg-shlibdeps -Tdebian/bioawk.substvars debian/bioawk/usr/bin/bioawk
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bioawk/usr/bin/bioawk was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
echo misc:Depends= >> debian/bioawk.substvars
echo misc:Pre-Depends= >> debian/bioawk.substvars
install -d debian/.debhelper/bioawk/dbgsym-root/DEBIAN
dpkg-gencontrol -pbioawk -ldebian/changelog -Tdebian/bioawk.substvars -Pdebian/.debhelper/bioawk/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=bioawk-dbgsym "-DDepends=bioawk (= \${binary:Version})" "-DDescription=debug symbols for bioawk" -DBuild-Ids=50ce92e57a8d85966592c8d11130408e7380dbad -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pbioawk -ldebian/changelog -Tdebian/bioawk.substvars -Pdebian/bioawk
chmod 0644 -- debian/bioawk/DEBIAN/control
dh_md5sums -a
cd debian/bioawk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/bioawk/DEBIAN/md5sums
cd debian/.debhelper/bioawk/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb --root-owner-group --build debian/bioawk ..
dpkg-deb --root-owner-group --build debian/.debhelper/bioawk/dbgsym-root ..
dpkg-deb: building package 'bioawk' in '../bioawk_1.0-4_armhf.deb'.
dpkg-deb: building package 'bioawk-dbgsym' in '../bioawk-dbgsym_1.0-4_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bioawk_1.0-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-08-23T17:48:05Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bioawk_1.0-4_armhf.changes:
---------------------------
Format: 1.8
Date: Wed, 17 Mar 2021 22:23:42 +0530
Source: bioawk
Binary: bioawk bioawk-dbgsym
Architecture: armhf
Version: 1.0-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
bioawk - extension of awk for biological sequence analysis
Closes: 985410
Changes:
bioawk (1.0-4) unstable; urgency=medium
.
* d/p/cross.patch: Fix non-cross buildability
* Use dpkg buildtools to set CC and CC_FOR_BUILD
(Closes: #985410)
Checksums-Sha1:
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bdf2c5e022f95c324221d36a654f98ad6bc733be 4856 bioawk_1.0-4_armhf.buildinfo
af2e4d22e4110a73da69459e79474073a76fdee1 45088 bioawk_1.0-4_armhf.deb
Checksums-Sha256:
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d5c6da30f388543b43a78eb7e733431776680a9a6081d5652bf467eca013aa5b 4856 bioawk_1.0-4_armhf.buildinfo
13d9b47f52d831b998ce711ab959b3c488e018dd1d3c74803f95c6d141704d4c 45088 bioawk_1.0-4_armhf.deb
Files:
ec5068499310745fb89151803d83876f 117188 debug optional bioawk-dbgsym_1.0-4_armhf.deb
d3829cf1d4cc33ddad037436fdcc83df 4856 science optional bioawk_1.0-4_armhf.buildinfo
5032af8108ada203b3f3bb96fccf7079 45088 science optional bioawk_1.0-4_armhf.deb
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| Package contents |
+------------------------------------------------------------------------------+
bioawk-dbgsym_1.0-4_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 117188 bytes: control archive=532 bytes.
362 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: bioawk-dbgsym
Source: bioawk
Version: 1.0-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 139
Depends: bioawk (= 1.0-4)
Section: debug
Priority: optional
Description: debug symbols for bioawk
Build-Ids: 50ce92e57a8d85966592c8d11130408e7380dbad
drwxr-xr-x root/root 0 2021-03-17 16:53 ./
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/lib/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root 131300 2021-03-17 16:53 ./usr/lib/debug/.build-id/50/ce92e57a8d85966592c8d11130408e7380dbad.debug
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/share/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-03-17 16:53 ./usr/share/doc/bioawk-dbgsym -> bioawk
bioawk_1.0-4_armhf.deb
----------------------
new Debian package, version 2.0.
size 45088 bytes: control archive=904 bytes.
778 bytes, 16 lines control
254 bytes, 4 lines md5sums
Package: bioawk
Version: 1.0-4
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 130
Depends: libc6 (>= 2.29), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/lh3/bioawk
Description: extension of awk for biological sequence analysis
Bioawk is an extension to Brian Kernighan's awk, adding the support of
several common biological data formats, including optionally gzip'ed BED, GFF,
SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a
few built-in functions and an command line option to use TAB as the
input/output delimiter. When the new functionality is not used, bioawk is
intended to behave exactly the same as the original BWK awk.
drwxr-xr-x root/root 0 2021-03-17 16:53 ./
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/bin/
-rwxr-xr-x root/root 117812 2021-03-17 16:53 ./usr/bin/bioawk
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/share/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/share/doc/bioawk/
-rw-r--r-- root/root 391 2021-03-17 16:53 ./usr/share/doc/bioawk/changelog.Debian.gz
-rw-r--r-- root/root 2431 2021-02-27 14:27 ./usr/share/doc/bioawk/copyright
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/share/man/
drwxr-xr-x root/root 0 2021-03-17 16:53 ./usr/share/man/man1/
-rw-r--r-- root/root 515 2021-03-17 16:53 ./usr/share/man/man1/bioawk.1.gz
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| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 2252
Build-Time: 51
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 221
Job: bioawk_1.0-4
Machine Architecture: armhf
Package: bioawk
Package-Time: 322
Source-Version: 1.0-4
Space: 2252
Status: successful
Version: 1.0-4
--------------------------------------------------------------------------------
Finished at 2021-08-23T17:48:05Z
Build needed 00:05:22, 2252k disc space