Raspbian Package Auto-Building

Build log for bamtools (2.5.2+dfsg-4) on armhf

bamtools → 2.5.2+dfsg-4 → armhf → 2022-12-22 05:03:36 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| bamtools 2.5.2+dfsg-4 (armhf)                Thu, 22 Dec 2022 04:35:55 +0000 |
+==============================================================================+

Package: bamtools
Version: 2.5.2+dfsg-4
Source Version: 2.5.2+dfsg-4
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-b69ccc3e-d394-4469-8b55-c51657751223' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.8 MB in 28s (991 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bamtools.git
Please use:
git clone https://salsa.debian.org/med-team/bamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 168 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main bamtools 2.5.2+dfsg-4 (dsc) [2474 B]
Get:2 http://172.17.4.1/private bookworm-staging/main bamtools 2.5.2+dfsg-4 (tar) [156 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main bamtools 2.5.2+dfsg-4 (diff) [10.0 kB]
Fetched 168 kB in 0s (1490 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bamtools-s4E4br/bamtools-2.5.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bamtools-s4E4br' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-5PZg9L/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-5PZg9L/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-5PZg9L/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2470 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap libperl5.34 netbase perl-modules-5.34
  sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 93 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15027 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkg-config
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkg-config
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<<BUILDDIR>>/resolver-5PZg9L/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ Sources [539 B]
Get:5 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ Packages [620 B]
Fetched 2492 B in 1s (3093 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install bamtools build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils
  binutils-arm-linux-gnueabihf binutils-common bsdextrautils bsdutils cmake
  cmake-data cpp-12 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism
  doxygen dwz file g++-12 gcc-12 gcc-12-base gettext gettext-base groff-base
  help2man intltool-debian libarchive-zip-perl libarchive13 libasan8
  libatomic1 libbinutils libblkid1 libbrotli1 libbsd0 libcc1-0 libclang-cpp14
  libclang1-14 libctf-nobfd0 libctf0 libcurl4 libdebhelper-perl libedit2
  libelf1 libexpat1 libfile-stripnondeterminism-perl libgcc-12-dev libgcc-s1
  libgomp1 libicu72 libjansson4 libjsoncpp-dev libjsoncpp25 libllvm14
  liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libmount1 libncurses6
  libnghttp2-14 libpipeline1 libpkgconf3 libprocps8 libpsl5 librhash0 librtmp1
  libsmartcols1 libssh2-1 libstdc++-12-dev libstdc++6 libsub-override-perl
  libtool libubsan1 libuchardet0 libuuid1 libuv1 libxml2 libz3-4 m4 man-db
  mount pkg-config pkgconf pkgconf-bin po-debconf procps util-linux
  util-linux-extra zlib1g zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc
  cmake-format elpa-cmake-mode ninja-build gcc-12-locales cpp-12-doc dh-make
  doxygen-latex doxygen-doc doxygen-gui graphviz gcc-12-doc gettext-doc
  libasprintf-dev libgettextpo-dev groff lrzip cryptsetup-bin libstdc++-12-doc
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser nfs-common libmail-box-perl dosfstools kbd util-linux-locales
Recommended packages:
  curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2 publicsuffix
  libltdl-dev uuid-runtime libmail-sendmail-perl psmisc
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
  d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file
  gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
  libarchive13 libbrotli1 libbsd0 libclang-cpp14 libclang1-14 libcurl4
  libdebhelper-perl libedit2 libelf1 libexpat1
  libfile-stripnondeterminism-perl libicu72 libjansson4 libjsoncpp-dev
  libjsoncpp25 libllvm14 liblocale-gettext-perl libmagic-mgc libmagic1 libmd0
  libncurses6 libnghttp2-14 libpipeline1 libpkgconf3 libprocps8 libpsl5
  librhash0 librtmp1 libssh2-1 libsub-override-perl libtool libuchardet0
  libuv1 libxml2 libz3-4 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf
  procps sbuild-build-depends-bamtools-dummy zlib1g-dev
The following packages will be upgraded:
  binutils binutils-arm-linux-gnueabihf binutils-common bsdutils cpp-12 g++-12
  gcc-12 gcc-12-base libasan8 libatomic1 libbinutils libblkid1 libcc1-0
  libctf-nobfd0 libctf0 libgcc-12-dev libgcc-s1 libgomp1 libmount1
  libsmartcols1 libstdc++-12-dev libstdc++6 libubsan1 libuuid1 mount
  util-linux util-linux-extra zlib1g
28 upgraded, 64 newly installed, 0 to remove and 65 not upgraded.
Need to get 114 MB of archives.
After this operation, 320 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-5PZg9L/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-5 [14.9 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf zlib1g armhf 1:1.2.13.dfsg-1 [73.5 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-10+rpi1 [32.2 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libctf0 armhf 2.39.50.20221208-5+rpi1 [71.1 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libctf-nobfd0 armhf 2.39.50.20221208-5+rpi1 [132 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libjansson4 armhf 2.14-2 [37.0 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf binutils-arm-linux-gnueabihf armhf 2.39.50.20221208-5+rpi1 [2056 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libbinutils armhf 2.39.50.20221208-5+rpi1 [405 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf binutils-common armhf 2.39.50.20221208-5+rpi1 [2312 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf binutils armhf 2.39.50.20221208-5+rpi1 [64.7 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-10+rpi1 [95.4 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-10+rpi1 [8228 B]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-10+rpi1 [2089 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-10+rpi1 [861 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-10+rpi1 [37.4 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-10+rpi1 [504 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-10+rpi1 [7913 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-10+rpi1 [2026 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-10+rpi1 [725 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-10+rpi1 [14.2 MB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-10+rpi1 [7159 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-10+rpi1 [36.2 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-7.1 [41.9 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-7.1 [457 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.6.0-1 [306 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-4 [66.7 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.2-1+rpi1 [125 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.25.1-1 [2026 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.25.1-1 [3859 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.3 [81.1 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.3 [942 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20221030-2 [76.2 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-3 [5798 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libllvm14 armhf 1:14.0.6-9+rpi1 [19.5 MB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libclang-cpp14 armhf 1:14.0.6-9+rpi1 [9465 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libclang1-14 armhf 1:14.0.6-9+rpi1 [5209 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf doxygen armhf 1.9.4-3.1 [3839 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.3 [198 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp-dev armhf 1.9.5-4 [26.4 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-11 [30.8 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-11 [27.6 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-11 [25.6 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-11 [13.4 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 114 MB in 9s (12.0 MB/s)
(Reading database ... 15027 files and directories currently installed.)
Preparing to unpack .../bsdutils_1%3a2.38.1-4_armhf.deb ...
Unpacking bsdutils (1:2.38.1-4) over (1:2.38.1-1.1) ...
Setting up bsdutils (1:2.38.1-4) ...
(Reading database ... 15027 files and directories currently installed.)
Preparing to unpack .../libsmartcols1_2.38.1-4_armhf.deb ...
Unpacking libsmartcols1:armhf (2.38.1-4) over (2.38.1-1.1) ...
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Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39.50.20221208-5+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-10+rpi1 gcc-12_12.2.0-10+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39.50.20221208-5+rpi1 binutils-arm-linux-gnueabihf_2.39.50.20221208-5+rpi1 binutils-common_2.39.50.20221208-5+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-10+rpi1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.11.3 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.39-1 doxygen_1.9.4-3.1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-10+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-10+rpi1 gcc-12-base_12.2.0-10+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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libclang-cpp14_1:14.0.6-9+rpi1 libclang1-14_1:14.0.6-9+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39.50.20221208-5+rpi1 libctf0_2.39.50.20221208-5+rpi1 libcurl4_7.86.0-2 libcwidget4_0.5.18-6 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.11.3 libdpkg-perl_1.21.9+rpi1 libedit2_3.1-20221030-2 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-2 libgcc-12-dev_12.2.0-10+rpi1 libgcc-s1_12.2.0-10+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-10+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjansson4_2.14-2 libjsoncpp-dev_1.9.5-4 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.4-2_2.4.59+dfsg-1+b1 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libsigc++-2.0-0v5_2.10.8-1 libsmartcols1_2.38.1-4 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-10+rpi1 libstdc++6_12.2.0-10+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-10+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libuv1_1.44.2-1+rpi1 libxapian30_1.4.21-1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libz3-4_4.8.12-3 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.Gc8vBI_Q/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 19 22:01:15 2022 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./bamtools_2.5.2+dfsg-4.dsc
dpkg-source: info: extracting bamtools in /<<BUILDDIR>>/bamtools-2.5.2+dfsg
dpkg-source: info: unpacking bamtools_2.5.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking bamtools_2.5.2+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying shared_and_static.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-b69ccc3e-d394-4469-8b55-c51657751223
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package bamtools
dpkg-buildpackage: info: source version 2.5.2+dfsg-4
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The CXX compiler identification is GNU 12.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0") 
-- Checking for one of the modules 'jsoncpp>=1'
Found system JsonCpp, not using bundled version
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    FETCHCONTENT_FULLY_DISCONNECTED


-- Build files have been written to: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf
   dh_auto_build -a
	cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/bamtools-2.5.2+dfsg -B/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make  -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/depend
make  -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.2+dfsg /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.2+dfsg /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/BamTools_static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make  -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/build
make  -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[  2%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamReader.cpp
[  2%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamAlignment.cpp
[  3%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp
[  4%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamAlignment.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:16:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   64 |     typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
      |                  ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_tree.h:65,
                 from /usr/include/c++/12/map:60,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.h:13,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:15:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function<MergeItem, MergeItem, bool>
      |                                                    ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
[  5%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp
[  6%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamReader.cpp
[  7%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamWriter.cpp
[  8%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamHeader.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:16:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   64 |     typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
      |                  ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_tree.h:65,
                 from /usr/include/c++/12/map:60,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.h:13,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:15:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function<MergeItem, MergeItem, bool>
      |                                                    ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
[  9%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamProgram.cpp
[ 10%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamWriter.cpp
[ 11%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamHeader.cpp
[ 12%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamProgramChain.cpp
[ 13%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamProgram.cpp
[ 14%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamReadGroup.cpp
[ 15%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamProgramChain.cpp
[ 16%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamReadGroupDictionary.cpp
[ 17%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamReadGroup.cpp
[ 18%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamSequence.cpp
[ 19%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamReadGroupDictionary.cpp
[ 20%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamSequence.cpp
[ 21%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamSequenceDictionary.cpp
[ 22%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamSequenceDictionary.cpp
[ 23%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 24%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 25%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp:10:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   64 |     typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
      |                  ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
                 from /usr/include/c++/12/stdexcept:39,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/shared/bamtools_global.h:72,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/api_global.h:14,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:13:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function<MergeItem, MergeItem, bool>
      |                                                    ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
[ 26%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 27%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp:10:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   64 |     typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
      |                  ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
                 from /usr/include/c++/12/stdexcept:39,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/shared/bamtools_global.h:72,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/api_global.h:14,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:13:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function<MergeItem, MergeItem, bool>
      |                                                    ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
[ 28%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 29%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 30%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 31%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 32%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 33%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 34%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 35%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 36%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 37%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 38%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
                 from /usr/include/c++/12/algorithm:61,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
                 from /usr/include/c++/12/algorithm:61,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
  224 |     __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
      |     ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1908 |     __introsort_loop(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1922 |           std::__introsort_loop(__cut, __last, __depth_limit, __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.h:27,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:880:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:880:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
    inlined from 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:589:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1802 |     __insertion_sort(_RandomAccessIterator __first,
      |     ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]',
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:384:37:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
    inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:206:46:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
    inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:248:42:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
    inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:266:38:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.h:28,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:634:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:655:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:813:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:806:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
  523 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:837:23:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1032 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:880:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:880:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.h:27,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
[ 39%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
    inlined from 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:589:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]',
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:384:37:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.h:28,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:634:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:655:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
    inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:206:46:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
    inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:248:42:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
    inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:266:38:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:813:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:806:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
  523 |     vector<_Tp, _Alloc>::
      |     ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]',
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:179:38:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
    inlined from 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:837:23:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
 1032 |           _M_fill_insert(end(), __new_size - size(), __x);
      |           ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:489:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:489:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamFile_p.cpp
[ 41%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]',
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
    inlined from 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:179:38:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 42%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamFtp_p.cpp
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:489:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1937 |           std::__introsort_loop(__first, __last,
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
 1938 |                                 std::__lg(__last - __first) * 2,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1939 |                                 __comp);
      |                                 ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
    inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
    inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
    inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:489:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1849 |           std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
      |           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
 1854 |         std::__insertion_sort(__first, __last, __comp);
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 44%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamFile_p.cpp
[ 45%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 46%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 47%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 48%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 50%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 51%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 52%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 53%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 54%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 55%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 56%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 57%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 58%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 59%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 60%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 61%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 62%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 63%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 64%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 65%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 66%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 67%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 68%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 69%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 70%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 71%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 72%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 73%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/utils/BamException_p.cpp
[ 74%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 75%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 76%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/utils/BamException_p.cpp
[ 77%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 78%] Linking CXX shared library libbamtools.so
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.2 -o libbamtools.so.2.5.2 CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/api/BamReader.cpp.o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o  -lz 
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.2 libbamtools.so.2.5.2 libbamtools.so
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target BamTools
make  -f src/CMakeFiles/BamTools-utils.dir/build.make src/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.2+dfsg /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make  -f src/CMakeFiles/BamTools-utils.dir/build.make src/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp
[ 80%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_options.cpp
[ 81%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_pileup_engine.cpp
[ 82%] Linking CXX static library libbamtools.a
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/BamTools_static.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools_static.dir/link.txt --verbose=1
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp: In member function 'bool BamTools::Fasta::FastaPrivate::CreateIndex(const std::string&)':
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:161:15: warning: comparison is always true due to limited range of data type [-Wtype-limits]
  161 |     while ((c >= 0) && (c != '\n')) {
      |             ~~^~~~
/usr/bin/ar qc libbamtools.a CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o
/usr/bin/ranlib libbamtools.a
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 82%] Built target BamTools_static
[ 83%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_utilities.cpp
In file included from /usr/include/c++/12/vector:70,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:21:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Fasta::FastaPrivate::FastaIndexData&}; _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator<BamTools::Fasta::FastaPrivate::FastaIndexData>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData>::iterator' changed in GCC 7.1
  439 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator<BamTools::Fasta::FastaPrivate::FastaIndexData>]',
    inlined from 'bool BamTools::Fasta::FastaPrivate::CreateIndex(const std::string&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:208:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator<BamTools::Fasta::FastaPrivate::FastaIndexData>]',
    inlined from 'bool BamTools::Fasta::FastaPrivate::LoadIndexData()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:556:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >' changed in GCC 7.1
 1287 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 84%] Linking CXX static library libBamTools-utils.a
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar qc libBamTools-utils.a "CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o"
/usr/bin/ranlib libBamTools-utils.a
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make  -f src/CMakeFiles/bamtools_cmd.dir/build.make src/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.2+dfsg /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make  -f src/CMakeFiles/bamtools_cmd.dir/build.make src/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 85%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_convert.cpp
[ 86%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.cpp
[ 87%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools.cpp
[ 88%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_coverage.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamAlgorithms.h:15,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.cpp:12:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   64 |     typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
      |                  ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_tool.h:14,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.h:13,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.cpp:10:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
[ 89%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_filter.cpp
[ 90%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_header.cpp
[ 91%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_index.cpp
[ 92%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_merge.cpp
[ 93%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_random.cpp
[ 94%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_resolve.cpp
[ 95%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_revert.cpp
[ 96%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.cpp:15:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
   64 |     typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
      |                  ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_tool.h:14,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.h:13,
                 from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.cpp:10:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
  131 |     struct binary_function
      |            ^~~~~~~~~~~~~~~
[ 97%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_split.cpp
[ 98%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_stats.cpp
[100%] Linking CXX executable bamtools
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -o bamtools  -Wl,-rpath,/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src: libBamTools-utils.a -L/usr/lib/arm-linux-gnueabihf -ljsoncpp libbamtools.so.2.5.2 
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
   debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg'
cd obj-* && ln -s src/toolkit/ bin
dh_auto_test --arch
	cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration  from :/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
UpdateCTestConfiguration  from :/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Test project /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
    Start 1: bamtools_help

1: Test command: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/bamtools "--help"
1: Working Directory: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/tests
1: Test timeout computed to be: 1500
test 2
    Start 2: bamtools_stats

2: Test command: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/bamtools "stats" "-in" "/<<BUILDDIR>>/bamtools-2.5.2+dfsg/tests/data/sam_spec_example.bam"
2: Working Directory: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/tests
2: Test timeout computed to be: 1500
1: 
1: usage: bamtools [--help] COMMAND [ARGS]
1: 
1: Available bamtools commands:
1: 	convert         Converts between BAM and a number of other formats
1: 	count           Prints number of alignments in BAM file(s)
1: 	coverage        Prints coverage statistics from the input BAM file
1: 	filter          Filters BAM file(s) by user-specified criteria
1: 	header          Prints BAM header information
1: 	index           Generates index for BAM file
1: 	merge           Merge multiple BAM files into single file
1: 	random          Select random alignments from existing BAM file(s), intended more as a testing tool.
1: 	resolve         Resolves paired-end reads (marking the IsProperPair flag as needed)
1: 	revert          Removes duplicate marks and restores original base qualities
1: 	sort            Sorts the BAM file according to some criteria
1: 	split           Splits a BAM file on user-specified property, creating a new BAM output file for each value found
1: 	stats           Prints some basic statistics from input BAM file(s)
1: 
1: See 'bamtools help COMMAND' for more information on a specific command.
1: 
2: 
2: **********************************************
2: Stats for BAM file(s): 
2: **********************************************
2: 
2: Total reads:       6
2: Mapped reads:      6	(100%)
2: Forward strand:    4	(66.6667%)
2: Reverse strand:    2	(33.3333%)
2: Failed QC:         0	(0%)
2: Duplicates:        0	(0%)
2: Paired-end reads:  2	(33.3333%)
2: 'Proper-pairs':    2	(100%)
2: Both pairs mapped: 2	(100%)
2: Read 1:            1
2: Read 2:            1
2: Singletons:        0	(0%)
2: 
1/2 Test #1: bamtools_help ....................   Passed    0.04 sec
2/2 Test #2: bamtools_stats ...................   Passed    0.04 sec

100% tests passed, 0 tests failed out of 2

Total Test time (real) =   0.07 sec
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<BUILDDIR>>/bamtools-2.5.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/bamtools-2.5.2+dfsg -B/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.2
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.a
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/bin/bamtools
-- Set runtime path of "/<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/bin/bamtools" to ""
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/bamtools_api_export.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/bamtools-1.pc
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
   debian/rules override_dh_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg'
dh_install --arch
d-shlibmove --commit \
	    --multiarch \
	    --devunversioned \
	    --exclude-la \
	    --movedev debian/tmp/usr/include/* usr/include \
	    --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
	    debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
 --> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.5.2/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.2 debian/libbamtools2.5.2/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.5.2
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg'
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.5.2/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.2 found in none of the libraries
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.2+dfsg-4_armhf.deb'.
dpkg-deb: building package 'bamtools' in '../bamtools_2.5.2+dfsg-4_armhf.deb'.
dpkg-deb: building package 'libbamtools2.5.2-dbgsym' in '../libbamtools2.5.2-dbgsym_2.5.2+dfsg-4_armhf.deb'.
dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.2+dfsg-4_armhf.deb'.
dpkg-deb: building package 'libbamtools2.5.2' in '../libbamtools2.5.2_2.5.2+dfsg-4_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../bamtools_2.5.2+dfsg-4_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../bamtools_2.5.2+dfsg-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-22T05:03:26Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


bamtools_2.5.2+dfsg-4_armhf.changes:
------------------------------------

Format: 1.8
Date: Mon, 19 Dec 2022 22:45:16 +0100
Source: bamtools
Binary: bamtools bamtools-dbgsym libbamtools-dev libbamtools2.5.2 libbamtools2.5.2-dbgsym
Architecture: armhf
Version: 2.5.2+dfsg-4
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
 bamtools   - toolkit for manipulating BAM (genome alignment) files
 libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
 libbamtools2.5.2 - dynamic library for manipulating BAM (genome alignment) files
Closes: 988848
Changes:
 bamtools (2.5.2+dfsg-4) unstable; urgency=medium
 .
   * Team upload.
   * d/control: libbamtools-doc depends on libjs-jquery.
     Thanks to Andreas Beckmann (Closes: #988848)
   * Standards-Version: 4.6.2 (routine-update)
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 9a65a0a562717e9690836b72ebf4a6e0f44e6f3ed6fffd9ca519124b800982d9 7945 bamtools_2.5.2+dfsg-4_armhf.buildinfo
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Files:
 cb84aad5ab42c37467616464c7c08ecd 3683904 debug optional bamtools-dbgsym_2.5.2+dfsg-4_armhf.deb
 7dd8a21e6b278c4e9dca341cacca7393 7945 science optional bamtools_2.5.2+dfsg-4_armhf.buildinfo
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 3ff5a87a5dde5982738a0350d58c4743 181860 libdevel optional libbamtools-dev_2.5.2+dfsg-4_armhf.deb
 4b95b70be01d35996def0c2f6e21fdf7 2777888 debug optional libbamtools2.5.2-dbgsym_2.5.2+dfsg-4_armhf.deb
 9f3e25c161aa2e5327de646633d2735a 125648 libs optional libbamtools2.5.2_2.5.2+dfsg-4_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


bamtools-dbgsym_2.5.2+dfsg-4_armhf.deb
--------------------------------------

 new Debian package, version 2.0.
 size 3683904 bytes: control archive=540 bytes.
     385 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: bamtools-dbgsym
 Source: bamtools
 Version: 2.5.2+dfsg-4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3726
 Depends: bamtools (= 2.5.2+dfsg-4)
 Section: debug
 Priority: optional
 Description: debug symbols for bamtools
 Build-Ids: 7ad2ac3e647e6d748092642fb03f63cd0913a656

drwxr-xr-x root/root         0 2022-12-19 21:45 ./
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/debug/.build-id/7a/
-rw-r--r-- root/root   3804936 2022-12-19 21:45 ./usr/lib/debug/.build-id/7a/d2ac3e647e6d748092642fb03f63cd0913a656.debug
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-12-19 21:45 ./usr/share/doc/bamtools-dbgsym -> bamtools


bamtools_2.5.2+dfsg-4_armhf.deb
-------------------------------

 new Debian package, version 2.0.
 size 155288 bytes: control archive=1476 bytes.
    1808 bytes,    37 lines      control              
     551 bytes,     8 lines      md5sums              
 Package: bamtools
 Version: 2.5.2+dfsg-4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 533
 Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.34), libgcc-s1 (>= 3.5), libjsoncpp25 (>= 1.9.5), libstdc++6 (>= 11)
 Section: science
 Priority: optional
 Homepage: https://github.com/pezmaster31/bamtools/wiki
 Description: toolkit for manipulating BAM (genome alignment) files
  BamTools facilitates research analysis and data management using BAM
  files.  It copes with the enormous amount of data produced by current
  sequencing technologies that is typically stored in compressed, binary
  formats that are not easily handled by the text-based parsers commonly
  used in bioinformatics research.
  .
  BamTools provides both a C++ API for BAM file support as well as a
  command-line toolkit.
  .
  This is the bamtools command-line toolkit.
  .
  Available bamtools commands:
   convert  Converts between BAM and a number of other formats
   count    Prints number of alignments in BAM file(s)
   coverage Prints coverage statistics from the input BAM file
   filter   Filters BAM file(s) by user-specified criteria
   header   Prints BAM header information
   index    Generates index for BAM file
   merge    Merge multiple BAM files into single file
   random   Select random alignments from existing BAM file(s), intended more
            as a testing tool.
   resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)
   revert   Removes duplicate marks and restores original base qualities
   sort     Sorts the BAM file according to some criteria
   split    Splits a BAM file on user-specified property, creating a new BAM
            output file for each value found
   stats    Prints some basic statistics from input BAM file(s)

drwxr-xr-x root/root         0 2022-12-19 21:45 ./
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/bin/
-rwxr-xr-x root/root    525848 2022-12-19 21:45 ./usr/bin/bamtools
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/doc/bamtools/
-rw-r--r-- root/root       262 2022-12-19 21:45 ./usr/share/doc/bamtools/README.test
-rw-r--r-- root/root      1381 2022-12-19 21:45 ./usr/share/doc/bamtools/changelog.Debian.gz
-rw-r--r-- root/root      1665 2022-12-19 21:45 ./usr/share/doc/bamtools/copyright
-rw-r--r-- root/root       352 2022-12-19 21:45 ./usr/share/doc/bamtools/filter_script
-rw-r--r-- root/root      1607 2022-12-19 21:45 ./usr/share/doc/bamtools/run-unit-test
-rw-r--r-- root/root       375 2022-12-19 21:45 ./usr/share/doc/bamtools/sam_spec_example.bam
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/man/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/man/man1/
-rw-r--r-- root/root       792 2022-12-19 21:45 ./usr/share/man/man1/bamtools.1.gz


libbamtools-dev_2.5.2+dfsg-4_armhf.deb
--------------------------------------

 new Debian package, version 2.0.
 size 181860 bytes: control archive=1620 bytes.
     969 bytes,    25 lines      control              
    1972 bytes,    26 lines      md5sums              
 Package: libbamtools-dev
 Source: bamtools
 Version: 2.5.2+dfsg-4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1020
 Depends: libbamtools2.5.2 (= 2.5.2+dfsg-4), zlib1g-dev
 Suggests: libbamtools-doc (= 2.5.2+dfsg-4)
 Breaks: libbamtools2.5.1
 Replaces: libbamtools2.5.1
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/pezmaster31/bamtools/wiki
 Description: C++ API for manipulating BAM (genome alignment) files
  BamTools facilitates research analysis and data management using BAM
  files.  It copes with the enormous amount of data produced by current
  sequencing technologies that is typically stored in compressed, binary
  formats that are not easily handled by the text-based parsers commonly
  used in bioinformatics research.
  .
  BamTools provides both a C++ API for BAM file support as well as a
  command-line toolkit.
  .
  This is the developers API package.

drwxr-xr-x root/root         0 2022-12-19 21:45 ./
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/include/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/include/bamtools/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/include/bamtools/api/
-rw-r--r-- root/root       848 2021-06-20 19:43 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root     22982 2021-06-20 19:43 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root     10700 2021-06-20 19:43 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root      9282 2021-06-20 19:43 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root      2754 2021-06-20 19:43 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root      4242 2021-06-20 19:43 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root      3780 2021-06-20 19:43 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root      1950 2021-06-20 19:43 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root      2818 2021-06-20 19:43 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root      3491 2021-06-20 19:43 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root      2842 2021-06-20 19:43 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root      2261 2021-06-20 19:43 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root      2822 2021-06-20 19:43 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root      3189 2021-06-20 19:43 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root      2987 2021-06-20 19:43 ./usr/include/bamtools/api/SamReadGroupDictionary.h
-rw-r--r-- root/root      2540 2021-06-20 19:43 ./usr/include/bamtools/api/SamSequence.h
-rw-r--r-- root/root      2950 2021-06-20 19:43 ./usr/include/bamtools/api/SamSequenceDictionary.h
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/include/bamtools/api/algorithms/
-rw-r--r-- root/root     12403 2021-06-20 19:43 ./usr/include/bamtools/api/algorithms/Sort.h
-rw-r--r-- root/root       663 2021-06-20 19:43 ./usr/include/bamtools/api/api_global.h
-rw-r--r-- root/root       967 2022-12-19 21:45 ./usr/include/bamtools/api/bamtools_api_export.h
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/include/bamtools/shared/
-rw-r--r-- root/root      2136 2021-06-20 19:43 ./usr/include/bamtools/shared/bamtools_global.h
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root    911188 2022-12-19 21:45 ./usr/lib/arm-linux-gnueabihf/libbamtools.a
lrwxrwxrwx root/root         0 2022-12-19 21:45 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.5.2
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root       263 2022-12-19 21:45 ./usr/lib/arm-linux-gnueabihf/pkgconfig/bamtools-1.pc
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/cmake/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/cmake/bamtools/
-rw-r--r-- root/root      1574 2022-12-19 21:45 ./usr/share/cmake/bamtools/bamtools-config.cmake
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/doc/libbamtools-dev/
-rw-r--r-- root/root      1384 2022-12-19 21:45 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz
-rw-r--r-- root/root      1665 2022-12-19 21:45 ./usr/share/doc/libbamtools-dev/copyright


libbamtools2.5.2-dbgsym_2.5.2+dfsg-4_armhf.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 2777888 bytes: control archive=556 bytes.
     426 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: libbamtools2.5.2-dbgsym
 Source: bamtools
 Version: 2.5.2+dfsg-4
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2836
 Depends: libbamtools2.5.2 (= 2.5.2+dfsg-4)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libbamtools2.5.2
 Build-Ids: 863b5446b5c4a358aaae99692a643083890759ef

drwxr-xr-x root/root         0 2022-12-19 21:45 ./
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/debug/.build-id/86/
-rw-r--r-- root/root   2893644 2022-12-19 21:45 ./usr/lib/debug/.build-id/86/3b5446b5c4a358aaae99692a643083890759ef.debug
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-12-19 21:45 ./usr/share/doc/libbamtools2.5.2-dbgsym -> libbamtools2.5.2


libbamtools2.5.2_2.5.2+dfsg-4_armhf.deb
---------------------------------------

 new Debian package, version 2.0.
 size 125648 bytes: control archive=1064 bytes.
     902 bytes,    22 lines      control              
     243 bytes,     3 lines      md5sums              
      51 bytes,     1 lines      shlibs               
      68 bytes,     2 lines      triggers             
 Package: libbamtools2.5.2
 Source: bamtools
 Version: 2.5.2+dfsg-4
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 400
 Depends: libc6 (>= 2.15), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://github.com/pezmaster31/bamtools/wiki
 Description: dynamic library for manipulating BAM (genome alignment) files
  BamTools facilitates research analysis and data management using BAM
  files.  It copes with the enormous amount of data produced by current
  sequencing technologies that is typically stored in compressed, binary
  formats that are not easily handled by the text-based parsers commonly
  used in bioinformatics research.
  .
  BamTools provides both a C++ API for BAM file support as well as a
  command-line toolkit.
  .
  This is the runtime library.

drwxr-xr-x root/root         0 2022-12-19 21:45 ./
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root    394656 2022-12-19 21:45 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.2
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/doc/
drwxr-xr-x root/root         0 2022-12-19 21:45 ./usr/share/doc/libbamtools2.5.2/
-rw-r--r-- root/root      1385 2022-12-19 21:45 ./usr/share/doc/libbamtools2.5.2/changelog.Debian.gz
-rw-r--r-- root/root      1665 2022-12-19 21:45 ./usr/share/doc/libbamtools2.5.2/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 122856
Build-Time: 771
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 827
Job: bamtools_2.5.2+dfsg-4
Machine Architecture: armhf
Package: bamtools
Package-Time: 1651
Source-Version: 2.5.2+dfsg-4
Space: 122856
Status: successful
Version: 2.5.2+dfsg-4
--------------------------------------------------------------------------------
Finished at 2022-12-22T05:03:26Z
Build needed 00:27:31, 122856k disc space