bamtools →
2.5.2+dfsg-2 →
armhf → 2022-09-05 04:41:38
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| bamtools 2.5.2+dfsg-2 (armhf) Mon, 05 Sep 2022 04:34:12 +0000 |
+==============================================================================+
Package: bamtools
Version: 2.5.2+dfsg-2
Source Version: 2.5.2+dfsg-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-ab0c4d3a-bc74-40a9-a8eb-79c03a2f2f7f' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.2 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.1 MB]
Fetched 27.4 MB in 9s (2929 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bamtools.git
Please use:
git clone https://salsa.debian.org/med-team/bamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 168 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main bamtools 2.5.2+dfsg-2 (dsc) [2356 B]
Get:2 http://172.17.4.1/private bookworm-staging/main bamtools 2.5.2+dfsg-2 (tar) [156 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main bamtools 2.5.2+dfsg-2 (diff) [9980 B]
Fetched 168 kB in 0s (4002 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bamtools-oN2wEu/bamtools-2.5.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bamtools-oN2wEu' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-jM5ooI/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-jM5ooI/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-jM5ooI/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9521 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 19 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (73.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12802 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkg-config
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen, pkg-config
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<<BUILDDIR>>/resolver-jM5ooI/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ Sources [539 B]
Get:5 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ Packages [621 B]
Fetched 2493 B in 0s (12.6 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bamtools build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism
dmsetup doxygen dwz emacsen-common file gettext gettext-base groff-base
help2man intltool-debian libapparmor1 libarchive-zip-perl libarchive13
libargon2-1 libbrotli1 libbsd0 libclang-cpp13 libclang1-13 libcryptsetup12
libcurl4 libdebhelper-perl libdevmapper1.02.1 libedit2 libelf1 libexpat1
libfdisk1 libfile-stripnondeterminism-perl libglib2.0-0 libicu71 libip4tc2
libjson-c5 libjsoncpp-dev libjsoncpp25 libkmod2 libllvm13
liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libncurses6
libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libssh2-1
libsub-override-perl libsystemd-shared libtool libuchardet0 libuv1
libxapian30 libxml2 libz3-4 m4 man-db pkg-config po-debconf procps systemd
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build
cmake-format dh-make doxygen-latex doxygen-doc doxygen-gui graphviz
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libtool-doc
gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less
www-browser libmail-box-perl systemd-container systemd-homed systemd-userdbd
systemd-boot libfido2-1 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0
policykit-1
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc default-dbus-system-bus | dbus-system-bus
systemd-timesyncd | time-daemon
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-elpa-helper dh-strip-nondeterminism
dmsetup doxygen dwz emacsen-common file gettext gettext-base groff-base
help2man intltool-debian libapparmor1 libarchive-zip-perl libarchive13
libargon2-1 libbrotli1 libbsd0 libclang-cpp13 libclang1-13 libcryptsetup12
libcurl4 libdebhelper-perl libdevmapper1.02.1 libedit2 libelf1 libexpat1
libfdisk1 libfile-stripnondeterminism-perl libglib2.0-0 libicu71 libip4tc2
libjson-c5 libjsoncpp-dev libjsoncpp25 libkmod2 libllvm13
liblocale-gettext-perl libmagic-mgc libmagic1 libmd0 libncurses6
libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libssh2-1
libsub-override-perl libsystemd-shared libtool libuchardet0 libuv1
libxapian30 libxml2 libz3-4 m4 man-db pkg-config po-debconf procps
sbuild-build-depends-bamtools-dummy systemd zlib1g-dev
0 upgraded, 75 newly installed, 0 to remove and 19 not upgraded.
Need to get 76.2 MB of archives.
After this operation, 332 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-jM5ooI/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b2 [18.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libargon2-1 armhf 0~20171227-0.3 [19.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf dmsetup armhf 2:1.02.185-1 [91.8 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libdevmapper1.02.1 armhf 2:1.02.185-1 [134 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libjson-c5 armhf 0.16-1 [40.0 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libcryptsetup12 armhf 2:2.5.0-2 [225 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libfdisk1 armhf 2.38.1-1 [237 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libkmod2 armhf 30+20220630-3 [51.8 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libapparmor1 armhf 3.0.7-1 [98.9 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libip4tc2 armhf 1.8.8-1 [32.9 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libsystemd-shared armhf 251.3-1+rpi1 [1526 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf systemd armhf 251.3-1+rpi1 [2985 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-1 [137 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-2 [34.2 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-2 [1364 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-7 [60.7 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-7 [475 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-8 [171 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-8 [510 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.6.0-1 [306 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.49.0-1 [69.8 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.84.0-2 [321 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-4 [66.7 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.1-2+rpi1 [124 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dh-elpa-helper all 2.0.10 [11.3 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf emacsen-common all 3.0.4 [19.3 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.24.1-1 [2018 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.24.1-1 [3654 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.9.1 [196 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-3 [10.4 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-8 [1219 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.9.1 [1071 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libedit2 armhf 3.1-20210910-1 [81.2 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libz3-4 armhf 4.8.12-1 [5758 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libllvm13 armhf 1:13.0.1-7+rpi1 [17.8 MB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libclang-cpp13 armhf 1:13.0.1-7+rpi1 [9067 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libclang1-13 armhf 1:13.0.1-7+rpi1 [5157 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libxapian30 armhf 1.4.20-2 [969 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf doxygen armhf 1.9.4-2 [3810 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf help2man armhf 1.49.2 [202 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.3-1 [1233 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp-dev armhf 1.9.5-4 [26.4 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package liblocale-gettext-perl.
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Setting up libxml2:armhf (2.9.14+dfsg-1) ...
Setting up liblocale-gettext-perl (1.07-4+b2) ...
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up help2man (1.49.2) ...
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Setting up cmake (3.24.1-1) ...
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Setting up dmsetup (2:1.02.185-1) ...
Setting up libcryptsetup12:armhf (2:2.5.0-2) ...
Setting up systemd (251.3-1+rpi1) ...
Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service.
Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target.
Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service.
Initializing machine ID from random generator.
Setting up man-db (2.10.2-2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer.
Setting up debhelper (13.9.1) ...
Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.38.90.20220713-2+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.1.0-7+rpi1 gcc-12_12.1.0-7+rpi1 libc6-dev_2.33-8+rpi1 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 linux-libc-dev_5.18.14-1+rpi1
Package versions: adduser_3.123 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.6.0 bash_5.1-6.1 binutils_2.38.90.20220713-2+rpi1 binutils-arm-linux-gnueabihf_2.38.90.20220713-2+rpi1 binutils-common_2.38.90.20220713-2+rpi1 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5+b2 cmake_3.24.1-1 cmake-data_3.24.1-1 coreutils_8.32-4.1 cpp_4:12.1.0-3+rpi1 cpp-12_12.1.0-7+rpi1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.9.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-elpa-helper_2.0.10 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.35-3 dmsetup_2:1.02.185-1 doxygen_1.9.4-2 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 emacsen-common_3.0.4 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.1.0-3+rpi1 g++-12_12.1.0-7+rpi1 gcc_4:12.1.0-3+rpi1 gcc-12_12.1.0-7+rpi1 gcc-12-base_12.1.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-8 gettext-base_0.21-8 gnupg_2.2.35-3 gnupg-l10n_2.2.35-3 gnupg-utils_2.2.35-3 gpg_2.2.35-3 gpg-agent_2.2.35-3 gpg-wks-client_2.2.35-3 gpg-wks-server_2.2.35-3 gpgconf_2.2.35-3 gpgsm_2.2.35-3 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 help2man_1.49.2 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1 libargon2-1_0~20171227-0.3 libasan8_12.1.0-7+rpi1 libassuan0_2.5.5-4 libatomic1_12.1.0-7+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2+rpi1 libblkid1_2.38.1-1 libbrotli1_1.0.9-2+b2 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5+b2 libc-bin_2.33-8+rpi1 libc-dev-bin_2.33-8+rpi1 libc6_2.33-8+rpi1 libc6-dev_2.33-8+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.1.0-7+rpi1 libclang-cpp13_1:13.0.1-7+rpi1 libclang1-13_1:13.0.1-7+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2+rpi1 libctf0_2.38.90.20220713-2+rpi1 libcurl4_7.84.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.263 libdebhelper-perl_13.9.1 libdevmapper1.02.1_2:1.02.185-1 libdpkg-perl_1.21.9+rpi1 libedit2_3.1-20210910-1 libelf1_0.187-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.1.0-7+rpi1 libgcc-s1_12.1.0-7+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libglib2.0-0_2.72.3-1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.1.0-7+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1 libip4tc2_1.8.8-1 libisl23_0.25-1 libjson-c5_0.16-1 libjsoncpp-dev_1.9.5-4 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 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libsqlite3-0_3.39.2-1 libss2_1.46.5-2 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-2 libstdc++-12-dev_12.1.0-7+rpi1 libstdc++6_12.1.0-7+rpi1 libsub-override-perl_0.09-3 libsystemd-shared_251.3-1+rpi1 libsystemd0_251.3-1+rpi1 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libubsan1_12.1.0-7+rpi1 libuchardet0_0.0.7-1 libudev1_251.3-1+rpi1 libunistring2_1.0-1 libuuid1_2.38.1-1 libuv1_1.44.1-2+rpi1 libxapian30_1.4.20-2 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libz3-4_4.8.12-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.18.14-1+rpi1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 pinentry-curses_1.2.0-2 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.3-1+rpi1 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.arXFz_Su/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 2 17:56:18 2022 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@emlwks999.eu"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./bamtools_2.5.2+dfsg-2.dsc
dpkg-source: info: extracting bamtools in /<<BUILDDIR>>/bamtools-2.5.2+dfsg
dpkg-source: info: unpacking bamtools_2.5.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking bamtools_2.5.2+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying shared_and_static.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-ab0c4d3a-bc74-40a9-a8eb-79c03a2f2f7f
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bamtools
dpkg-buildpackage: info: source version 2.5.2+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The CXX compiler identification is GNU 12.1.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2")
-- Checking for one of the modules 'jsoncpp>=1'
Found system JsonCpp, not using bundled version
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/bamtools-2.5.2+dfsg -B/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/depend
make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.2+dfsg /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.2+dfsg /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/BamTools_static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/BamTools.dir/build.make src/CMakeFiles/BamTools.dir/build
make -f src/CMakeFiles/BamTools_static.dir/build.make src/CMakeFiles/BamTools_static.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 2%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o
[ 2%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o
[ 3%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o
[ 4%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamAlignment.cpp
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamAlignment.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:16:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
64 | typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_tree.h:65,
from /usr/include/c++/12/map:60,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.h:13,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:15:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function<MergeItem, MergeItem, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:16:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
64 | typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/bits/stl_tree.h:65,
from /usr/include/c++/12/map:60,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.h:13,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamMultiReader.cpp:15:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function<MergeItem, MergeItem, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 5%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamReader.cpp
[ 6%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamReader.cpp
[ 7%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamWriter.cpp
[ 8%] Building CXX object src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -MF CMakeFiles/BamTools.dir/api/BamWriter.cpp.o.d -o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamWriter.cpp
[ 9%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamHeader.cpp
[ 10%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -MF CMakeFiles/BamTools.dir/api/SamHeader.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamHeader.cpp
[ 11%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamProgram.cpp
[ 12%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamProgram.cpp
[ 13%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamProgramChain.cpp
[ 14%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamProgramChain.cpp
[ 15%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamReadGroup.cpp
[ 16%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamReadGroup.cpp
[ 17%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamReadGroupDictionary.cpp
[ 18%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamSequence.cpp
[ 19%] Building CXX object src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamSequenceDictionary.cpp
[ 20%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamReadGroupDictionary.cpp
[ 21%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 22%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamSequence.cpp
[ 23%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -MF CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/SamSequenceDictionary.cpp
[ 24%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp:10:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
64 | typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/stdexcept:39,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/shared/bamtools_global.h:72,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/api_global.h:14,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:13:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function<MergeItem, MergeItem, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 25%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 26%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 27%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 28%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:32,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:29,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.cpp:10:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
64 | typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /usr/include/c++/12/stdexcept:39,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/shared/bamtools_global.h:72,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/api_global.h:14,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiReader_p.h:13:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamMultiMerger_p.h:52:52: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
52 | struct API_NO_EXPORT MergeItemSorter : public std::binary_function<MergeItem, MergeItem, bool>
| ^~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 29%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 30%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 31%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 32%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 33%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 34%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 35%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 36%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/bam/BamWriter_p.cpp
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/12/vector:70,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.h:27,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:589:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 37%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamFile_p.cpp
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:384:37:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:880:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:880:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:206:46:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:248:42:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:266:38:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.h:28,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:634:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:655:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:813:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:806:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:837:23:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 38%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 39%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 40%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamFtp_p.cpp
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:179:38:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:489:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:489:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 42%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
In file included from /usr/include/c++/12/bits/stl_algo.h:60,
from /usr/include/c++/12/algorithm:61,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1908 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1802 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:880:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long unsigned int*, vector<long long unsigned int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:880:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 43%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
In file included from /usr/include/c++/12/vector:70,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.h:28,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:634:27:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:655:35:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:70,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.h:27,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:589:25:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:813:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:806:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
523 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
[ 44%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamPipe_p.cpp
In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]',
inlined from 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:837:23:
/usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1032 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:384:37:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:206:46:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:248:42:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]',
inlined from 'virtual bool BamTools::Internal::BamToolsIndex::Create()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:266:38:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 45%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BgzfStream_p.cpp
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:179:38:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:489:9:
/usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1937 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1938 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1939 | __comp);
| ~~~~~~~
In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]',
inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/12/bits/stl_algo.h:1940:31,
inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<long long int*, vector<long long int> >]' at /usr/include/c++/12/bits/stl_algo.h:4820:18,
inlined from 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:489:9:
/usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1854 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 46%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 47%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamFile_p.cpp
[ 48%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 50%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 51%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 52%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 53%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 54%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 55%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 56%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 57%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 58%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 59%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 60%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 61%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 62%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 63%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 64%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 65%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 66%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 67%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 68%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 69%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 70%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/utils/BamException_p.cpp
[ 71%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 72%] Building CXX object src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 73%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 74%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 75%] Linking CXX shared library libbamtools.so
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.2 -o libbamtools.so.2.5.2 CMakeFiles/BamTools.dir/api/BamAlignment.cpp.o CMakeFiles/BamTools.dir/api/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/api/BamReader.cpp.o CMakeFiles/BamTools.dir/api/BamWriter.cpp.o CMakeFiles/BamTools.dir/api/SamHeader.cpp.o CMakeFiles/BamTools.dir/api/SamProgram.cpp.o CMakeFiles/BamTools.dir/api/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/api/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/api/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/api/SamSequence.cpp.o CMakeFiles/BamTools.dir/api/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -lz
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.2 libbamtools.so.2.5.2 libbamtools.so
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 75%] Built target BamTools
[ 76%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
make -f src/CMakeFiles/BamTools-utils.dir/build.make src/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.2+dfsg /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make -f src/CMakeFiles/BamTools-utils.dir/build.make src/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp: In member function 'bool BamTools::Fasta::FastaPrivate::CreateIndex(const std::string&)':
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:161:15: warning: comparison is always true due to limited range of data type [-Wtype-limits]
161 | while ((c >= 0) && (c != '\n')) {
| ~~^~~~
[ 78%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_options.cpp
[ 79%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_pileup_engine.cpp
In file included from /usr/include/c++/12/vector:70,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:21:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BamTools::Fasta::FastaPrivate::FastaIndexData&}; _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator<BamTools::Fasta::FastaPrivate::FastaIndexData>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator<BamTools::Fasta::FastaPrivate::FastaIndexData>]',
inlined from 'bool BamTools::Fasta::FastaPrivate::CreateIndex(const std::string&)' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:208:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator<BamTools::Fasta::FastaPrivate::FastaIndexData>]',
inlined from 'bool BamTools::Fasta::FastaPrivate::LoadIndexData()' at /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_fasta.cpp:556:24:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 80%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/utils/BamException_p.cpp
[ 81%] Building CXX object src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -MF CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o.d -o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 82%] Building CXX object src/CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o -MF CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o.d -o CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/utils/bamtools_utilities.cpp
[ 83%] Linking CXX static library libbamtools.a
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/BamTools_static.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools_static.dir/link.txt --verbose=1
/usr/bin/ar qc libbamtools.a CMakeFiles/BamTools_static.dir/api/BamAlignment.cpp.o CMakeFiles/BamTools_static.dir/api/BamMultiReader.cpp.o CMakeFiles/BamTools_static.dir/api/BamReader.cpp.o CMakeFiles/BamTools_static.dir/api/BamWriter.cpp.o CMakeFiles/BamTools_static.dir/api/SamHeader.cpp.o CMakeFiles/BamTools_static.dir/api/SamProgram.cpp.o CMakeFiles/BamTools_static.dir/api/SamProgramChain.cpp.o CMakeFiles/BamTools_static.dir/api/SamReadGroup.cpp.o CMakeFiles/BamTools_static.dir/api/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools_static.dir/api/SamSequence.cpp.o CMakeFiles/BamTools_static.dir/api/SamSequenceDictionary.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/utils/BamException_p.cpp.o CMakeFiles/BamTools_static.dir/api/internal/io/TcpSocketEngine_unix_p.cpp.o
/usr/bin/ranlib libbamtools.a
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[ 83%] Built target BamTools_static
[ 84%] Linking CXX static library libBamTools-utils.a
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar qc libBamTools-utils.a "CMakeFiles/BamTools-utils.dir/utils/bamtools_fasta.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_options.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_pileup_engine.cpp.o" "CMakeFiles/BamTools-utils.dir/utils/bamtools_utilities.cpp.o"
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[ 84%] Built target BamTools-utils
make -f src/CMakeFiles/bamtools_cmd.dir/build.make src/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.2+dfsg /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
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make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[ 85%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o
[ 87%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o
[ 87%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools.cpp
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_convert.cpp
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.cpp
[ 88%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_coverage.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/BamAlgorithms.h:15,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.cpp:12:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
64 | typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_tool.h:14,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.h:13,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_count.cpp:10:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 89%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_filter.cpp
[ 90%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_header.cpp
[ 91%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_index.cpp
[ 92%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_merge.cpp
[ 93%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_random.cpp
[ 94%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_resolve.cpp
[ 95%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_revert.cpp
[ 96%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.cpp
In file included from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.cpp:15:
/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/api/algorithms/Sort.h:64:18: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
64 | typedef std::binary_function<BamAlignment, BamAlignment, bool> AlignmentSortBase;
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/string:48,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_tool.h:14,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.h:13,
from /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_sort.cpp:10:
/usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
[ 97%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_split.cpp
[ 98%] Building CXX object src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/usr/include/jsoncpp -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT src/CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -MF CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o.d -o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.2+dfsg/src/toolkit/bamtools_stats.cpp
[100%] Linking CXX executable bamtools
cd /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/bamtools-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/toolkit/bamtools.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/toolkit/bamtools_stats.cpp.o -o bamtools -Wl,-rpath,/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src: libBamTools-utils.a -L/usr/lib/arm-linux-gnueabihf -ljsoncpp libbamtools.so.2.5.2
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg'
cd obj-* && ln -s src/toolkit/ bin
dh_auto_test --arch
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=--verbose ARGS\+=-j4
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4
UpdateCTestConfiguration from :/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
UpdateCTestConfiguration from :/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Parse Config file:/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/DartConfiguration.tcl
Test project /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf
Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
test 1
Start 1: bamtools_help
1: Test command: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/bamtools "--help"
1: Working Directory: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/tests
1: Test timeout computed to be: 1500
test 2
Start 2: bamtools_stats
2: Test command: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/src/bamtools "stats" "-in" "/<<BUILDDIR>>/bamtools-2.5.2+dfsg/tests/data/sam_spec_example.bam"
2: Working Directory: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf/tests
2: Test timeout computed to be: 1500
1:
1: usage: bamtools [--help] COMMAND [ARGS]
1:
1: Available bamtools commands:
1: convert Converts between BAM and a number of other formats
1: count Prints number of alignments in BAM file(s)
1: coverage Prints coverage statistics from the input BAM file
1: filter Filters BAM file(s) by user-specified criteria
1: header Prints BAM header information
1: index Generates index for BAM file
1: merge Merge multiple BAM files into single file
1: random Select random alignments from existing BAM file(s), intended more as a testing tool.
1: resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
1: revert Removes duplicate marks and restores original base qualities
1: sort Sorts the BAM file according to some criteria
1: split Splits a BAM file on user-specified property, creating a new BAM output file for each value found
1: stats Prints some basic statistics from input BAM file(s)
1:
1: See 'bamtools help COMMAND' for more information on a specific command.
1:
2:
2: **********************************************
2: Stats for BAM file(s):
2: **********************************************
2:
2: Total reads: 6
2: Mapped reads: 6 (100%)
2: Forward strand: 4 (66.6667%)
2: Reverse strand: 2 (33.3333%)
2: Failed QC: 0 (0%)
2: Duplicates: 0 (0%)
2: Paired-end reads: 2 (33.3333%)
2: 'Proper-pairs': 2 (100%)
1/2 Test #1: bamtools_help .................... Passed 0.01 sec
2: Both pairs mapped: 2 (100%)
2: Read 1: 1
2: Read 2: 1
2: Singletons: 0 (0%)
2:
2/2 Test #2: bamtools_stats ................... Passed 0.01 sec
100% tests passed, 0 tests failed out of 2
Total Test time (real) = 0.01 sec
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<BUILDDIR>>/bamtools-2.5.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/bamtools-2.5.2+dfsg -B/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.2
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.a
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/bin/bamtools
-- Set runtime path of "/<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/bin/bamtools" to ""
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/bamtools_api_export.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/bamtools-1.pc
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg'
dh_install --arch
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.5.2/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/bamtools-2.5.2+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.2 debian/libbamtools2.5.2/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.5.2
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.2+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.5.2/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.2 found in none of the libraries
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'bamtools' in '../bamtools_2.5.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libbamtools2.5.2-dbgsym' in '../libbamtools2.5.2-dbgsym_2.5.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libbamtools2.5.2' in '../libbamtools2.5.2_2.5.2+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../bamtools_2.5.2+dfsg-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../bamtools_2.5.2+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-09-05T04:41:31Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bamtools_2.5.2+dfsg-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Fri, 02 Sep 2022 19:53:29 +0200
Source: bamtools
Binary: bamtools bamtools-dbgsym libbamtools-dev libbamtools2.5.2 libbamtools2.5.2-dbgsym
Architecture: armhf
Version: 2.5.2+dfsg-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools2.5.2 - dynamic library for manipulating BAM (genome alignment) files
Closes: 1015861
Changes:
bamtools (2.5.2+dfsg-2) unstable; urgency=medium
.
* Do not try to move Doxyfile.bak which does not exist any more in doxygen
1.9.4
Closes: #1015861
* Build-Depends: pkg-config (since cmake is asking for it)
* Standards-Version: 4.6.1 (routine-update)
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f8efa3f8a13b82a5b7bda188d3e129a4 157752 science optional bamtools_2.5.2+dfsg-2_armhf.deb
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7964b247dd9638b1b335d919f30abd32 126860 libs optional libbamtools2.5.2_2.5.2+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bamtools-dbgsym_2.5.2+dfsg-2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 3682936 bytes: control archive=536 bytes.
385 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: bamtools-dbgsym
Source: bamtools
Version: 2.5.2+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3725
Depends: bamtools (= 2.5.2+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for bamtools
Build-Ids: 7f7c8c3251617e151f42569113fc45d96a9907d6
drwxr-xr-x root/root 0 2022-09-02 17:53 ./
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/debug/.build-id/7f/
-rw-r--r-- root/root 3804032 2022-09-02 17:53 ./usr/lib/debug/.build-id/7f/7c8c3251617e151f42569113fc45d96a9907d6.debug
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-02 17:53 ./usr/share/doc/bamtools-dbgsym -> bamtools
bamtools_2.5.2+dfsg-2_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 157752 bytes: control archive=1476 bytes.
1807 bytes, 37 lines control
551 bytes, 8 lines md5sums
Package: bamtools
Version: 2.5.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 534
Depends: libbamtools2.5.2 (>= 2.5.2+dfsg), libc6 (>= 2.4), libgcc-s1 (>= 3.5), libjsoncpp25 (>= 1.9.5), libstdc++6 (>= 11)
Section: science
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
drwxr-xr-x root/root 0 2022-09-02 17:53 ./
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/bin/
-rwxr-xr-x root/root 525848 2022-09-02 17:53 ./usr/bin/bamtools
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/doc/bamtools/
-rw-r--r-- root/root 262 2021-04-15 19:34 ./usr/share/doc/bamtools/README.test
-rw-r--r-- root/root 2852 2022-09-02 17:53 ./usr/share/doc/bamtools/changelog.Debian.gz
-rw-r--r-- root/root 1665 2021-10-18 18:47 ./usr/share/doc/bamtools/copyright
-rw-r--r-- root/root 352 2021-04-15 19:34 ./usr/share/doc/bamtools/filter_script
-rw-r--r-- root/root 1527 2021-10-18 17:52 ./usr/share/doc/bamtools/run-unit-test
-rw-r--r-- root/root 375 2021-04-15 19:34 ./usr/share/doc/bamtools/sam_spec_example.bam
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/man/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2022-09-02 17:53 ./usr/share/man/man1/bamtools.1.gz
libbamtools-dev_2.5.2+dfsg-2_armhf.deb
--------------------------------------
new Debian package, version 2.0.
size 183484 bytes: control archive=1620 bytes.
969 bytes, 25 lines control
1972 bytes, 26 lines md5sums
Package: libbamtools-dev
Source: bamtools
Version: 2.5.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1021
Depends: libbamtools2.5.2 (= 2.5.2+dfsg-2), zlib1g-dev
Suggests: libbamtools-doc (= 2.5.2+dfsg-2)
Breaks: libbamtools2.5.1
Replaces: libbamtools2.5.1
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
drwxr-xr-x root/root 0 2022-09-02 17:53 ./
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/include/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/include/bamtools/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/include/bamtools/api/
-rw-r--r-- root/root 848 2021-06-20 19:43 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root 22982 2021-06-20 19:43 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root 10700 2021-06-20 19:43 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root 9282 2021-06-20 19:43 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root 2754 2021-06-20 19:43 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root 4242 2021-06-20 19:43 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root 3780 2021-06-20 19:43 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root 1950 2021-06-20 19:43 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root 2818 2021-06-20 19:43 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root 3491 2021-06-20 19:43 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root 2842 2021-06-20 19:43 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root 2261 2021-06-20 19:43 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root 2822 2021-06-20 19:43 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root 3189 2021-06-20 19:43 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root 2987 2021-06-20 19:43 ./usr/include/bamtools/api/SamReadGroupDictionary.h
-rw-r--r-- root/root 2540 2021-06-20 19:43 ./usr/include/bamtools/api/SamSequence.h
-rw-r--r-- root/root 2950 2021-06-20 19:43 ./usr/include/bamtools/api/SamSequenceDictionary.h
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/include/bamtools/api/algorithms/
-rw-r--r-- root/root 12403 2021-06-20 19:43 ./usr/include/bamtools/api/algorithms/Sort.h
-rw-r--r-- root/root 663 2021-06-20 19:43 ./usr/include/bamtools/api/api_global.h
-rw-r--r-- root/root 967 2022-09-02 17:53 ./usr/include/bamtools/api/bamtools_api_export.h
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/include/bamtools/shared/
-rw-r--r-- root/root 2136 2021-06-20 19:43 ./usr/include/bamtools/shared/bamtools_global.h
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 911188 2022-09-02 17:53 ./usr/lib/arm-linux-gnueabihf/libbamtools.a
lrwxrwxrwx root/root 0 2022-09-02 17:53 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.5.2
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 263 2022-09-02 17:53 ./usr/lib/arm-linux-gnueabihf/pkgconfig/bamtools-1.pc
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/
drwxr-xr-x root/root 0 2021-04-15 19:34 ./usr/share/cmake/
drwxr-xr-x root/root 0 2021-04-15 19:34 ./usr/share/cmake/bamtools/
-rw-r--r-- root/root 1574 2021-04-15 19:34 ./usr/share/cmake/bamtools/bamtools-config.cmake
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/doc/libbamtools-dev/
-rw-r--r-- root/root 2852 2022-09-02 17:53 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz
-rw-r--r-- root/root 1665 2021-10-18 18:47 ./usr/share/doc/libbamtools-dev/copyright
libbamtools2.5.2-dbgsym_2.5.2+dfsg-2_armhf.deb
----------------------------------------------
new Debian package, version 2.0.
size 2776516 bytes: control archive=560 bytes.
426 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbamtools2.5.2-dbgsym
Source: bamtools
Version: 2.5.2+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2835
Depends: libbamtools2.5.2 (= 2.5.2+dfsg-2)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libbamtools2.5.2
Build-Ids: 19cbecbd39abd1bc2512403f5a1adc10b2294492
drwxr-xr-x root/root 0 2022-09-02 17:53 ./
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/debug/.build-id/19/
-rw-r--r-- root/root 2892656 2022-09-02 17:53 ./usr/lib/debug/.build-id/19/cbecbd39abd1bc2512403f5a1adc10b2294492.debug
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-09-02 17:53 ./usr/share/doc/libbamtools2.5.2-dbgsym -> libbamtools2.5.2
libbamtools2.5.2_2.5.2+dfsg-2_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 126860 bytes: control archive=1064 bytes.
902 bytes, 22 lines control
243 bytes, 3 lines md5sums
51 bytes, 1 lines shlibs
67 bytes, 2 lines triggers
Package: libbamtools2.5.2
Source: bamtools
Version: 2.5.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 401
Depends: libc6 (>= 2.15), libgcc-s1 (>= 3.5), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
drwxr-xr-x root/root 0 2022-09-02 17:53 ./
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 394656 2022-09-02 17:53 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.2
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-09-02 17:53 ./usr/share/doc/libbamtools2.5.2/
-rw-r--r-- root/root 2852 2022-09-02 17:53 ./usr/share/doc/libbamtools2.5.2/changelog.Debian.gz
-rw-r--r-- root/root 1665 2021-10-18 18:47 ./usr/share/doc/libbamtools2.5.2/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 122828
Build-Time: 153
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 269
Job: bamtools_2.5.2+dfsg-2
Machine Architecture: armhf
Package: bamtools
Package-Time: 439
Source-Version: 2.5.2+dfsg-2
Space: 122828
Status: successful
Version: 2.5.2+dfsg-2
--------------------------------------------------------------------------------
Finished at 2022-09-05T04:41:31Z
Build needed 00:07:19, 122828k disk space