bamtools →
2.5.1+dfsg-7+b1 →
armhf → 2020-12-12 05:41:16
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| bamtools 2.5.1+dfsg-7+b1 (armhf) Sat, 12 Dec 2020 05:35:30 +0000 |
+==============================================================================+
Package: bamtools
Version: 2.5.1+dfsg-7+b1
Source Version: 2.5.1+dfsg-7
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-4886ecd4-67ff-467c-8da6-2f520168ca85' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.9 MB in 12s (2011 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/bamtools.git
Please use:
git clone https://salsa.debian.org/med-team/bamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 211 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main bamtools 2.5.1+dfsg-7 (dsc) [2388 B]
Get:2 http://172.17.0.1/private bullseye-staging/main bamtools 2.5.1+dfsg-7 (tar) [197 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main bamtools 2.5.1+dfsg-7 (diff) [11.7 kB]
Fetched 211 kB in 0s (695 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bamtools-G3CGuF/bamtools-2.5.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bamtools-G3CGuF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-9TXSqR/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-9TXSqR/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-9TXSqR/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (9534 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (66.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12776 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<<BUILDDIR>>/resolver-9TXSqR/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ Sources [532 B]
Get:5 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ Packages [613 B]
Fetched 2478 B in 0s (11.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bamtools build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libbrotli1 libbsd0 libclang-cpp11 libclang1-11 libcroco3
libcurl4 libdebhelper-perl libedit2 libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libjsoncpp-dev
libjsoncpp24 libllvm11 liblocale-gettext-perl libmagic-mgc libmagic1
libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1
libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0 libuv1
libxml2 libz3-4 m4 man-db po-debconf procps zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev cmake cmake-data d-shlibs
debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libbrotli1 libbsd0 libclang-cpp11 libclang1-11 libcroco3
libcurl4 libdebhelper-perl libedit2 libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libjsoncpp-dev
libjsoncpp24 libllvm11 liblocale-gettext-perl libmagic-mgc libmagic1
libncurses6 libnghttp2-14 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1
libsigsegv2 libssh2-1 libsub-override-perl libtool libuchardet0 libuv1
libxml2 libz3-4 m4 man-db po-debconf procps
sbuild-build-depends-bamtools-dummy zlib1g-dev
0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded.
Need to get 63.4 MB of archives.
After this operation, 272 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-9TXSqR/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [900 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf liblocale-gettext-perl armhf 1.07-4+b1 [18.3 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-1 [79.5 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.18.4-1+rpi1 [1725 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-4 [8289 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.72.0-1 [300 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp24 armhf 1.9.4-3 [66.9 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.0-1 [133 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.40.0-1 [118 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.18.4-1+rpi1+b1 [3111 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf d-shlibs all 0.96 [17.8 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3 [188 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3 [1009 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libz3-4 armhf 4.8.9-1 [5548 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libllvm11 armhf 1:11.0.0-5+rpi1 [15.6 MB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libclang-cpp11 armhf 1:11.0.0-5+rpi1 [8272 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libclang1-11 armhf 1:11.0.0-5+rpi1 [4646 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf doxygen armhf 1.8.20-5 [3430 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.16 [181 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp-dev armhf 1.9.4-3 [25.4 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libexpat1:armhf (2.2.10-1) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
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Setting up libicu67:armhf (67.1-4) ...
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No schema files found: doing nothing.
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Setting up libnghttp2-14:armhf (1.42.0-1) ...
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Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libz3-4:armhf (4.8.9-1) ...
Setting up libuv1:armhf (1.40.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up d-shlibs (0.96) ...
Setting up libjsoncpp24:armhf (1.9.4-3) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up librhash0:armhf (1.4.0-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up cmake-data (3.18.4-1+rpi1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up liblocale-gettext-perl (1.07-4+b1) ...
Setting up libprocps8:armhf (2:3.3.16-5) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libjsoncpp-dev:armhf (1.9.4-3) ...
Setting up libtool (2.4.6-14) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up libedit2:armhf (3.1-20191231-1) ...
Setting up m4 (1.4.18-4) ...
Setting up help2man (1.47.16) ...
Setting up libllvm11:armhf (1:11.0.0-5+rpi1) ...
Setting up libclang1-11 (1:11.0.0-5+rpi1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libcurl4:armhf (7.72.0-1) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libclang-cpp11 (1:11.0.0-5+rpi1) ...
Setting up doxygen (1.8.20-5) ...
Setting up cmake (3.18.4-1+rpi1+b1) ...
Setting up po-debconf (1.0.21) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.3) ...
Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-4+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-19+rpi1 gcc-10_10.2.0-19+rpi1 libc6-dev_2.31-5+rpi1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc3-1 binutils_2.35.1-4+rpi1 binutils-arm-linux-gnueabihf_2.35.1-4+rpi1 binutils-common_2.35.1-4+rpi1 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 cmake_3.18.4-1+rpi1+b1 cmake-data_3.18.4-1+rpi1 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-19+rpi1 d-shlibs_0.96 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.3 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 doxygen_1.8.20-5 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-19+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-19+rpi1 gcc-10-base_10.2.0-19+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.18.3-4 libacl1_2.2.53-8 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_10.2.0-19+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-19+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1+b1 libbinutils_2.35.1-4+rpi1 libblkid1_2.36.1-2 libboost-iostreams1.71.0_1.71.0-7+b1 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-5+rpi1 libc-dev-bin_2.31-5+rpi1 libc6_2.31-5+rpi1 libc6-dev_2.31-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-19+rpi1 libclang-cpp11_1:11.0.0-5+rpi1 libclang1-11_1:11.0.0-5+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-4+rpi1 libctf0_2.35.1-4+rpi1 libcurl4_7.72.0-1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.3 libdpkg-perl_1.20.5+rpi1 libedit2_3.1-20191231-1 libelf1_0.182-1 libexpat1_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-2 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-19+rpi1 libgcc-s1_10.2.0-19+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.0-19+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-4 libisl23_0.23-1 libjsoncpp-dev_1.9.4-3 libjsoncpp24_1.9.4-3 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-2 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 libldap-common_2.4.56+dfsg-1+rpi1 libllvm11_1:11.0.0-5+rpi1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-1 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.35-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libreadline8_8.1~rc3-1 librhash0_1.4.0-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36.1-2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-19+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-2 libuv1_1.40.0-1 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.3 libz3-4_4.8.9-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 procps_2:3.3.16-5 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc3-1 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020d-1 util-linux_2.36.1-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.P2ELnjvT/trustedkeys.kbx': General error
gpgv: Signature made Fri May 29 11:11:15 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bamtools_2.5.1+dfsg-7.dsc
dpkg-source: info: extracting bamtools in /<<BUILDDIR>>/bamtools-2.5.1+dfsg
dpkg-source: info: unpacking bamtools_2.5.1+dfsg.orig.tar.gz
dpkg-source: info: unpacking bamtools_2.5.1+dfsg-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying doxygen-tweak
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0006-Doxygen-reproducibility
dpkg-source: info: applying 0008_Cmake_Test.patch
dpkg-source: info: applying spelling
dpkg-source: info: applying tiddit.patch
dpkg-source: info: applying shared_and_static.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.5.1+dfsg-7+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-4886ecd4-67ff-467c-8da6-2f520168ca85
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bamtools
dpkg-buildpackage: info: source version 2.5.1+dfsg-7+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The CXX compiler identification is GNU 10.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy):
The OLD behavior for policy CMP0042 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE)
-- Checking for one of the modules 'jsoncpp>=1'
Did NOT find system JsonCpp, instead using bundled version
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
-- Build files have been written to: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/bamtools-2.5.1+dfsg -B/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
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cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.1+dfsg /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools_static.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
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Dependee "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools_static.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools_static.dir/depend.internal".
Dependee "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools_static.dir/depend.internal".
Dependee "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/depend.internal".
Dependee "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/depend.internal".
Scanning dependencies of target BamTools_static
Scanning dependencies of target BamTools
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make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
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make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
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[ 4%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o
[ 4%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o
[ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
[ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp
[ 5%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamReader.cpp.o
[ 6%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/BamReader.cpp
[ 7%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamHeader.cpp.o
[ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/BamReader.cpp
[ 9%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp
[ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp
[ 11%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp
[ 12%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp
[ 13%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp
[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp
[ 15%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp
[ 16%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp
[ 17%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp
[ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp
[ 19%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp
[ 20%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp
[ 22%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp
[ 24%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp
[ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 28%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 30%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 32%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 34%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 35%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
[ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)':
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual bool BamTools::Internal::BamToolsIndex::Create()':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)':
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
[ 39%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1945 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:185:1: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
185 | }
| ^
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/10/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)':
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 40%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp
/usr/include/c++/10/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)':
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'virtual bool BamTools::Internal::BamToolsIndex::Create()':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator' changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)':
/usr/include/c++/10/bits/stl_vector.h:960:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
960 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp
[ 43%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
/usr/include/c++/10/bits/vector.tcc: In member function 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)':
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:185:1: note: parameter passing for argument of type 'std::vector<long long int>::iterator' changed in GCC 7.1
185 | }
| ^
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18:
/usr/include/c++/10/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)':
/usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1974 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1975 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1976 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
1891 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
[ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 46%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 48%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 51%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp
/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'void BamTools::Internal::HostAddress::Clear()':
/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:49: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct BamTools::Internal::IPv6Address'; use assignment or value-initialization instead [-Wclass-memaccess]
273 | memset(&m_ip6Address, 0, sizeof(IPv6Address));
| ^
In file included from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10:
/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: 'struct BamTools::Internal::IPv6Address' declared here
31 | struct IPv6Address
| ^~~~~~~~~~~
[ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 53%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 54%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 55%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 56%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 57%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 58%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 59%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 61%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp
/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'void BamTools::Internal::HostAddress::Clear()':
/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:273:49: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct BamTools::Internal::IPv6Address'; use assignment or value-initialization instead [-Wclass-memaccess]
273 | memset(&m_ip6Address, 0, sizeof(IPv6Address));
| ^
In file included from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp:10:
/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.h:31:8: note: 'struct BamTools::Internal::IPv6Address' declared here
31 | struct IPv6Address
| ^~~~~~~~~~~
[ 62%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 63%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 65%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 66%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 67%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 68%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 69%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 70%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 71%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 72%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 73%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 74%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 75%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp
[ 76%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 77%] Building CXX object src/api/CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp
[ 78%] Linking CXX shared library libbamtools.so
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.1 -o libbamtools.so.2.5.1 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.1 libbamtools.so.2.5.1 libbamtools.so
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
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cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.5.1+dfsg /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
Dependee "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake" is newer than depender "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/depend.internal".
Dependee "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/depend.internal".
Scanning dependencies of target BamTools-utils
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
[ 80%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
[ 80%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
[ 81%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils/bamtools_options.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils/bamtools_pileup_engine.cpp
[ 82%] Linking CXX static library libbamtools.a
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -P CMakeFiles/BamTools_static.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools_static.dir/link.txt --verbose=1
/usr/bin/ar qc libbamtools.a CMakeFiles/BamTools_static.dir/BamAlignment.cpp.o CMakeFiles/BamTools_static.dir/BamMultiReader.cpp.o CMakeFiles/BamTools_static.dir/BamReader.cpp.o CMakeFiles/BamTools_static.dir/BamWriter.cpp.o CMakeFiles/BamTools_static.dir/SamHeader.cpp.o CMakeFiles/BamTools_static.dir/SamProgram.cpp.o CMakeFiles/BamTools_static.dir/SamProgramChain.cpp.o CMakeFiles/BamTools_static.dir/SamReadGroup.cpp.o CMakeFiles/BamTools_static.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools_static.dir/SamSequence.cpp.o CMakeFiles/BamTools_static.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools_static.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools_static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools_static.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools_static.dir/internal/utils/BamException_p.cpp.o
/usr/bin/ranlib libbamtools.a
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[ 82%] Built target BamTools_static
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cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils/bamtools_utilities.cpp
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp:20:
/usr/include/c++/10/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Fasta::FastaPrivate::FastaIndexData&}; _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator<BamTools::Fasta::FastaPrivate::FastaIndexData>]':
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData>::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData>::iterator' changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp:20:
/usr/include/c++/10/bits/stl_vector.h: In member function 'bool BamTools::Fasta::FastaPrivate::CreateIndex(const string&)':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In member function 'bool BamTools::Fasta::FastaPrivate::LoadIndexData()':
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >' changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 84%] Linking CXX static library libbamtools-utils.a
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cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar qc libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
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[ 87%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
[ 87%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
[ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
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cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_convert.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_coverage.cpp
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_filter.cpp
[ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_header.cpp
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_index.cpp
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_merge.cpp
[ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
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[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_resolve.cpp
[ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_revert.cpp
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
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cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_split.cpp
[ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_stats.cpp
[ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/utils -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /<<BUILDDIR>>/bamtools-2.5.1+dfsg/src/toolkit/bamtools.cpp
[100%] Linking CXX executable bamtools
cd /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o bamtools -Wl,-rpath,/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api: ../utils/libbamtools-utils.a -ljsoncpp ../api/libbamtools.so.2.5.1
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_auto_test-arch
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg'
cd obj-* && ln -s src/toolkit/ bin
dh_auto_test --arch
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=-j4
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf
Start 1: bamtools_help
Start 2: bamtools_stats
1/2 Test #1: bamtools_help .................... Passed 0.01 sec
2/2 Test #2: bamtools_stats ................... Passed 0.01 sec
100% tests passed, 0 tests failed out of 2
Total Test time (real) = 0.02 sec
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<BUILDDIR>>/bamtools-2.5.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<BUILDDIR>>/bamtools-2.5.1+dfsg -B/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/bamtools-1.pc
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.1
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.a
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools
-- Set runtime path of "/<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools" to ""
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg'
dh_install --arch
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.5.1/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.1 debian/libbamtools2.5.1/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.5.1
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf/pkgconfig
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.5.1+dfsg'
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_lintian -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.5.1/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.1 found in none of the libraries
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package libbamtools-dev: substitution variable ${devlibs:Depends} unused, but is defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'bamtools' in '../bamtools_2.5.1+dfsg-7+b1_armhf.deb'.
dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.1+dfsg-7+b1_armhf.deb'.
dpkg-deb: building package 'libbamtools2.5.1-dbgsym' in '../libbamtools2.5.1-dbgsym_2.5.1+dfsg-7+b1_armhf.deb'.
dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.5.1+dfsg-7+b1_armhf.deb'.
dpkg-deb: building package 'libbamtools2.5.1' in '../libbamtools2.5.1_2.5.1+dfsg-7+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../bamtools_2.5.1+dfsg-7+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-12T05:41:08Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bamtools_2.5.1+dfsg-7+b1_armhf.changes:
---------------------------------------
Format: 1.8
Date: Fri, 29 May 2020 13:00:25 +0200
Source: bamtools (2.5.1+dfsg-7)
Binary: bamtools bamtools-dbgsym libbamtools-dev libbamtools2.5.1 libbamtools2.5.1-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.5.1+dfsg-7+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools2.5.1 - dynamic library for manipulating BAM (genome alignment) files
Changes:
bamtools (2.5.1+dfsg-7+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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Files:
99838777b2b38259d6bffa6e2e94b57b 3022080 debug optional bamtools-dbgsym_2.5.1+dfsg-7+b1_armhf.deb
20588982ad69d5e2636921fc4426ffe3 8056 science optional bamtools_2.5.1+dfsg-7+b1_armhf.buildinfo
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2523a6085688c61d69919d7d556e638d 134800 libs optional libbamtools2.5.1_2.5.1+dfsg-7+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bamtools-dbgsym_2.5.1+dfsg-7+b1_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 3022080 bytes: control archive=544 bytes.
406 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: bamtools-dbgsym
Source: bamtools (2.5.1+dfsg-7)
Version: 2.5.1+dfsg-7+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3080
Depends: bamtools (= 2.5.1+dfsg-7+b1)
Section: debug
Priority: optional
Description: debug symbols for bamtools
Build-Ids: 6d3915c0f0359f929badd2358bd46519408d589c
drwxr-xr-x root/root 0 2020-05-29 11:00 ./
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/debug/.build-id/6d/
-rw-r--r-- root/root 3142892 2020-05-29 11:00 ./usr/lib/debug/.build-id/6d/3915c0f0359f929badd2358bd46519408d589c.debug
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-05-29 11:00 ./usr/share/doc/bamtools-dbgsym -> bamtools
bamtools_2.5.1+dfsg-7+b1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 143628 bytes: control archive=1556 bytes.
1843 bytes, 38 lines control
705 bytes, 10 lines md5sums
Package: bamtools
Source: bamtools (2.5.1+dfsg-7)
Version: 2.5.1+dfsg-7+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 482
Depends: libbamtools2.5.1 (>= 2.5.1+dfsg), libc6 (>= 2.4), libgcc-s1 (>= 3.5), libjsoncpp24 (>= 1.9.4), libstdc++6 (>= 5.2)
Section: science
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
drwxr-xr-x root/root 0 2020-05-29 11:00 ./
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/bin/
-rwxr-xr-x root/root 468504 2020-05-29 11:00 ./usr/bin/bamtools
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/doc/bamtools/
-rw-r--r-- root/root 262 2020-05-29 11:00 ./usr/share/doc/bamtools/README.test
-rw-r--r-- root/root 226 2020-05-29 11:00 ./usr/share/doc/bamtools/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2408 2020-05-29 11:00 ./usr/share/doc/bamtools/changelog.Debian.gz
-rw-r--r-- root/root 1665 2020-05-29 11:00 ./usr/share/doc/bamtools/copyright
-rw-r--r-- root/root 352 2020-05-29 11:00 ./usr/share/doc/bamtools/filter_script
-rw-r--r-- root/root 1302 2020-05-29 11:00 ./usr/share/doc/bamtools/run-unit-test
-rw-r--r-- root/root 375 2020-05-29 11:00 ./usr/share/doc/bamtools/sam_spec_example.bam
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/lintian/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 71 2020-05-29 11:00 ./usr/share/lintian/overrides/bamtools
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/man/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2020-05-29 11:00 ./usr/share/man/man1/bamtools.1.gz
libbamtools-dev_2.5.1+dfsg-7+b1_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 179140 bytes: control archive=1616 bytes.
1019 bytes, 25 lines control
1981 bytes, 26 lines md5sums
Package: libbamtools-dev
Source: bamtools (2.5.1+dfsg-7)
Version: 2.5.1+dfsg-7+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1025
Depends: libbamtools2.5.1 (= 2.5.1+dfsg-7+b1)
Suggests: libbamtools-doc (= 2.5.1+dfsg-7+b1)
Breaks: libbamtools2.4.0 (<< 2.5.1+dfsg-2~)
Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
drwxr-xr-x root/root 0 2020-05-29 11:00 ./
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/include/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/include/bamtools/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/include/bamtools/api/
-rw-r--r-- root/root 848 2017-12-23 18:10 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root 22851 2020-05-29 11:00 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root 14259 2017-12-23 18:10 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root 9317 2020-05-29 11:00 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root 2754 2017-12-23 18:10 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root 4242 2017-12-23 18:10 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root 3780 2017-12-23 18:10 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root 1950 2017-12-23 18:10 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root 2818 2017-12-23 18:10 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root 3491 2017-12-23 18:10 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root 2899 2017-12-23 18:10 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root 2332 2017-12-23 18:10 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root 2897 2017-12-23 18:10 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root 3266 2017-12-23 18:10 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root 3083 2017-12-23 18:10 ./usr/include/bamtools/api/SamReadGroupDictionary.h
-rw-r--r-- root/root 2570 2017-12-23 18:10 ./usr/include/bamtools/api/SamSequence.h
-rw-r--r-- root/root 3043 2017-12-23 18:10 ./usr/include/bamtools/api/SamSequenceDictionary.h
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/include/bamtools/api/algorithms/
-rw-r--r-- root/root 12242 2017-12-23 18:10 ./usr/include/bamtools/api/algorithms/Sort.h
-rw-r--r-- root/root 754 2017-12-23 18:10 ./usr/include/bamtools/api/api_global.h
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/include/bamtools/shared/
-rw-r--r-- root/root 2346 2017-12-23 18:10 ./usr/include/bamtools/shared/bamtools_global.h
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 912140 2020-05-29 11:00 ./usr/lib/arm-linux-gnueabihf/libbamtools.a
lrwxrwxrwx root/root 0 2020-05-29 11:00 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.5.1
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/arm-linux-gnueabihf/pkgconfig/
-rw-r--r-- root/root 246 2020-05-29 11:00 ./usr/lib/arm-linux-gnueabihf/pkgconfig/bamtools-1.pc
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/cmake/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/cmake/bamtools/
-rw-r--r-- root/root 1574 2020-05-29 11:00 ./usr/share/cmake/bamtools/bamtools-config.cmake
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/doc/
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-rw-r--r-- root/root 2408 2020-05-29 11:00 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz
-rw-r--r-- root/root 1665 2020-05-29 11:00 ./usr/share/doc/libbamtools-dev/copyright
libbamtools2.5.1-dbgsym_2.5.1+dfsg-7+b1_armhf.deb
-------------------------------------------------
new Debian package, version 2.0.
size 2236920 bytes: control archive=568 bytes.
447 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbamtools2.5.1-dbgsym
Source: bamtools (2.5.1+dfsg-7)
Version: 2.5.1+dfsg-7+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2315
Depends: libbamtools2.5.1 (= 2.5.1+dfsg-7+b1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libbamtools2.5.1
Build-Ids: 3f4c24075a179d6679ea1b3409016bee2dd76f77
drwxr-xr-x root/root 0 2020-05-29 11:00 ./
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/debug/.build-id/3f/
-rw-r--r-- root/root 2359528 2020-05-29 11:00 ./usr/lib/debug/.build-id/3f/4c24075a179d6679ea1b3409016bee2dd76f77.debug
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/
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lrwxrwxrwx root/root 0 2020-05-29 11:00 ./usr/share/doc/libbamtools2.5.1-dbgsym -> libbamtools2.5.1
libbamtools2.5.1_2.5.1+dfsg-7+b1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 134800 bytes: control archive=1104 bytes.
919 bytes, 22 lines control
334 bytes, 4 lines md5sums
51 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libbamtools2.5.1
Source: bamtools (2.5.1+dfsg-7)
Version: 2.5.1+dfsg-7+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 446
Depends: libc6 (>= 2.15), libgcc-s1 (>= 3.5), libstdc++6 (>= 9), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
drwxr-xr-x root/root 0 2020-05-29 11:00 ./
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 439712 2020-05-29 11:00 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.1
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-05-29 11:00 ./usr/share/doc/libbamtools2.5.1/
-rw-r--r-- root/root 226 2020-05-29 11:00 ./usr/share/doc/libbamtools2.5.1/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2408 2020-05-29 11:00 ./usr/share/doc/libbamtools2.5.1/changelog.Debian.gz
-rw-r--r-- root/root 1665 2020-05-29 11:00 ./usr/share/doc/libbamtools2.5.1/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 122360
Build-Time: 124
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 193
Job: bamtools_2.5.1+dfsg-7
Machine Architecture: armhf
Package: bamtools
Package-Time: 338
Source-Version: 2.5.1+dfsg-7
Space: 122360
Status: successful
Version: 2.5.1+dfsg-7+b1
--------------------------------------------------------------------------------
Finished at 2020-12-12T05:41:08Z
Build needed 00:05:38, 122360k disk space