bamtools →
2.4.1+dfsg-2 →
armhf → 2017-10-03 02:24:02
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| bamtools 2.4.1+dfsg-2 (armhf) Tue, 03 Oct 2017 02:16:19 +0000 |
+==============================================================================+
Package: bamtools
Version: 2.4.1+dfsg-2
Source Version: 2.4.1+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-9b5adab9-1630-48d3-8d32-07586189160d' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
Fetched 22.4 MB in 8s (2730 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/bamtools.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/bamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 216 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main bamtools 2.4.1+dfsg-2 (dsc) [2407 B]
Get:2 http://172.17.0.1/private buster-staging/main bamtools 2.4.1+dfsg-2 (tar) [202 kB]
Get:3 http://172.17.0.1/private buster-staging/main bamtools 2.4.1+dfsg-2 (diff) [11.8 kB]
Fetched 216 kB in 0s (1839 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bamtools-nbMnyA/bamtools-2.4.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bamtools-nbMnyA' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-c04to2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-c04to2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-c04to2/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (7271 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 16 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15082 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
Filtered Build-Depends: debhelper (>= 10), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<<BUILDDIR>>/resolver-c04to2/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ Sources [535 B]
Get:5 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ Packages [612 B]
Fetched 2480 B in 0s (9026 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bamtools build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file
gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libbsd0 libclang1-5.0 libcroco3 libcurl3 libedit2 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu57
libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libllvm5.0 liblocale-gettext-perl liblzo2-2 libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsigsegv2
libssh2-1 libssl1.0.2 libtimedate-perl libtool libuv1 libxapian30 libxml2 m4
man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui graphviz
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user
libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file
gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libbsd0 libclang1-5.0 libcroco3 libcurl3 libedit2 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu57
libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libllvm5.0 liblocale-gettext-perl liblzo2-2 libmagic-mgc
libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsigsegv2
libssh2-1 libssl1.0.2 libtimedate-perl libtool libuv1 libxapian30 libxml2 m4
man-db po-debconf sbuild-build-depends-bamtools-dummy zlib1g-dev
0 upgraded, 59 newly installed, 0 to remove and 16 not upgraded.
Need to get 47.0 MB of archives.
After this operation, 179 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-c04to2/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [824 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf liblocale-gettext-perl armhf 1.07-3+b2 [18.3 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.3-1 [1296 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-4 [609 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-3.1 [251 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-2 [58.4 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-2 [115 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-2 [265 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-2 [132 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.26.0-1 [72.2 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.18.0-4 [42.4 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2l-2 [893 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.55.1-1 [264 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.4-3 [94.7 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.9.1-3 [73.2 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.9.3-1 [2441 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20170329-1 [69.0 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf d-shlibs all 0.81 [18.7 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.54.0-1 [2650 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.8 [973 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libllvm5.0 armhf 1:5.0~+rc2-1+rpi1 [11.7 MB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libclang1-5.0 armhf 1:5.0~+rc2-1+rpi1 [5529 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libxapian30 armhf 1.4.4-3 [939 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf doxygen armhf 1.8.13-9 [3258 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf help2man armhf 1.47.5 [162 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libjsoncpp-dev armhf 1.7.4-3 [78.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Processing triggers for libc-bin (2.24-14) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-3+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-5 gcc-7_7.2.0-5 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch
Package versions: adduser_3.116 apt_1.5 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-3+rpi1 binutils-arm-linux-gnueabihf_2.29.1-3+rpi1 binutils-common_2.29.1-3+rpi1 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 cmake_3.9.3-1 cmake-data_3.9.3-1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-5 d-shlibs_0.81 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.8 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dirmngr_2.2.1-1 dmsetup_2:1.02.142-1 doxygen_1.8.13-9 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 fdisk_2.29.2-5 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.2.0-1d1 g++-7_7.2.0-5 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-5 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libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 libsystemd0_234-3 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-5 libudev1_234-3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-5 libuv1_1.9.1-3 libxapian30_1.4.4-3 libxml2_2.9.4+dfsg1-4 linux-base_4.5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-5 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-8 perl-base_5.26.0-8 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-8 pinentry-curses_1.0.0-2 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017b-2 udev_234-3 util-linux_2.29.2-5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 8 16:21:13 2017 UTC
gpgv: using RSA key EAB723A266F627E68055615F59B2306F3AF9DDC1
gpgv: issuer "afif@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bamtools_2.4.1+dfsg-2.dsc
dpkg-source: info: extracting bamtools in /<<BUILDDIR>>/bamtools-2.4.1+dfsg
dpkg-source: info: unpacking bamtools_2.4.1+dfsg.orig.tar.gz
dpkg-source: info: unpacking bamtools_2.4.1+dfsg-2.debian.tar.xz
dpkg-source: info: applying doxygen-tweak
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying non-deprecated-jsoncpp-function-names
dpkg-source: info: applying 0002-support-out-of-source-build.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch
dpkg-source: info: applying 0006-Doxygen-reproducibility
dpkg-source: info: applying 0007-Big_Endian.patch
dpkg-source: info: applying 0008_Cmake_Test.patch
dpkg-source: info: applying spelling
dpkg-source: info: applying fix_soversion.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-9b5adab9-1630-48d3-8d32-07586189160d
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bamtools
dpkg-buildpackage: info: source version 2.4.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build bamtools-2.4.1+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_auto_clean
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch --parallel
dh_update_autotools_config -a -O--parallel
dh_autoreconf -a -O--parallel
dh_auto_configure -a -O--parallel
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-- The C compiler identification is GNU 7.2.0
-- The CXX compiler identification is GNU 7.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a -O--parallel
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/bamtools-2.4.1+dfsg -B/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-static
Scanning dependencies of target BamTools
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make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
[ 3%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
[ 3%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
[ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.cpp
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.cpp
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamMultiReader.cpp
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamMultiReader.cpp
[ 5%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamReader.cpp
[ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamWriter.cpp
[ 7%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamReader.cpp
[ 8%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamWriter.cpp
[ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamHeader.cpp
[ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgram.cpp
[ 11%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamHeader.cpp
[ 12%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgramChain.cpp
[ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamReadGroup.cpp
[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamReadGroupDictionary.cpp
[ 15%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamSequence.cpp
[ 16%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgram.cpp
[ 17%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamSequenceDictionary.cpp
[ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 19%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgramChain.cpp
[ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 22%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamReadGroup.cpp
[ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 24%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamReadGroupDictionary.cpp
[ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 27%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamSequence.cpp
[ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 30%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamSequenceDictionary.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool BamTools::Internal::BamToolsIndex::Create()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 32%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamHeader_p.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)':
/usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
[ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamFile_p.cpp
[ 34%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
[ 35%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 37%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 39%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 41%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 42%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 43%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 44%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 45%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 46%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 47%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamFile_p.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 48%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'std::__cxx11::string BamTools::Internal::HostAddress::GetIPString() const':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp:325:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if ( i != 0 )
^~
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp:327:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
ss << hex << ( (uint16_t(m_ip6Address[2*i]) << 8) |
^~
/usr/include/c++/7/bits/stl_vector.h: In member function 'virtual bool BamTools::Internal::BamToolsIndex::Create()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
[ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostInfo_p.cpp
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/7/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)':
/usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
_M_fill_insert(end(), __new_size - size(), __x);
~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 51%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamFtp_p.cpp
/usr/include/c++/7/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
In file included from /usr/include/c++/7/bits/stl_algo.h:61:0,
from /usr/include/c++/7/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/7/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/7/algorithm:62:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/7/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
/usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/7/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)':
/usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' changed in GCC 7.1
std::__introsort_loop(__first, __last,
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
std::__lg(__last - __first) * 2,
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
__comp);
~~~~~~~
[ 52%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 53%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 55%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 56%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 58%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 61%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 63%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 64%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 65%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'std::__cxx11::string BamTools::Internal::HostAddress::GetIPString() const':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp:325:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if ( i != 0 )
^~
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp:327:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
ss << hex << ( (uint16_t(m_ip6Address[2*i]) << 8) |
^~
[ 66%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 67%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 68%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 69%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/utils/BamException_p.cpp
[ 70%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 71%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 72%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 73%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 74%] Linking CXX shared library ../../lib/libbamtools.so
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.4.0 -o ../../lib/libbamtools.so.2.4.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz
[ 75%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[ 75%] Built target BamTools
[ 76%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 77%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 78%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/utils/BamException_p.cpp
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-utils
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils/bamtools_fasta.cpp
In file included from /usr/include/c++/7/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils/bamtools_fasta.cpp:19:
/usr/include/c++/7/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator<BamTools::Fasta::FastaPrivate::FastaIndexData>]':
/usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type 'std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >}' changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/7/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils/bamtools_fasta.cpp:19:
/usr/include/c++/7/bits/stl_vector.h: In member function 'bool BamTools::Fasta::FastaPrivate::CreateIndex(const string&)':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/7/bits/stl_vector.h: In member function 'bool BamTools::Fasta::FastaPrivate::LoadIndexData()':
/usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Fasta::FastaPrivate::FastaIndexData*, std::vector<BamTools::Fasta::FastaPrivate::FastaIndexData> >' changed in GCC 7.1
_M_realloc_insert(end(), __x);
~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
[ 80%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils/bamtools_options.cpp
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cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils/bamtools_utilities.cpp
[ 83%] Linking CXX static library ../../lib/libbamtools.a
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cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-static.dir/link.txt --verbose=1
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cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
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cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
Scanning dependencies of target bamtools_cmd
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[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
[ 87%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_convert.cpp
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_count.cpp
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cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_coverage.cpp
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_filter.cpp
[ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_header.cpp
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_index.cpp
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_merge.cpp
[ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_random.cpp
[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_resolve.cpp
[ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_revert.cpp
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_sort.cpp
[ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp: In member function 'bool BamTools::SplitTool::SplitToolPrivate::SplitListTagImpl(BamTools::BamAlignment&)':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:474:23: warning: typedef 'TagElementType' locally defined but not used [-Wunused-local-typedefs]
typedef T TagElementType;
^~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamReader.h:14:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:14:
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h: In instantiation of 'bool BamTools::BamAlignment::GetTag(const string&, std::vector<T>&) const [with T = signed char; std::__cxx11::string = std::__cxx11::basic_string<char>]':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:499:13: required from 'bool BamTools::SplitTool::SplitToolPrivate::SplitListTagImpl(BamTools::BamAlignment&) [with T = signed char]'
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:415:95: required from here
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:582:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
int elementLength = 0;
^~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h: In instantiation of 'bool BamTools::BamAlignment::GetTag(const string&, std::vector<T>&) const [with T = short int; std::__cxx11::string = std::__cxx11::basic_string<char>]':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:499:13: required from 'bool BamTools::SplitTool::SplitToolPrivate::SplitListTagImpl(BamTools::BamAlignment&) [with T = short int]'
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:416:96: required from here
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:582:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h: In instantiation of 'bool BamTools::BamAlignment::GetTag(const string&, std::vector<T>&) const [with T = int; std::__cxx11::string = std::__cxx11::basic_string<char>]':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:499:13: required from 'bool BamTools::SplitTool::SplitToolPrivate::SplitListTagImpl(BamTools::BamAlignment&) [with T = int]'
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:417:96: required from here
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:582:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h: In instantiation of 'bool BamTools::BamAlignment::GetTag(const string&, std::vector<T>&) const [with T = unsigned char; std::__cxx11::string = std::__cxx11::basic_string<char>]':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:499:13: required from 'bool BamTools::SplitTool::SplitToolPrivate::SplitListTagImpl(BamTools::BamAlignment&) [with T = unsigned char]'
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:418:96: required from here
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:582:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h: In instantiation of 'bool BamTools::BamAlignment::GetTag(const string&, std::vector<T>&) const [with T = short unsigned int; std::__cxx11::string = std::__cxx11::basic_string<char>]':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:499:13: required from 'bool BamTools::SplitTool::SplitToolPrivate::SplitListTagImpl(BamTools::BamAlignment&) [with T = short unsigned int]'
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:419:97: required from here
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:582:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h: In instantiation of 'bool BamTools::BamAlignment::GetTag(const string&, std::vector<T>&) const [with T = unsigned int; std::__cxx11::string = std::__cxx11::basic_string<char>]':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:499:13: required from 'bool BamTools::SplitTool::SplitToolPrivate::SplitListTagImpl(BamTools::BamAlignment&) [with T = unsigned int]'
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:420:97: required from here
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:582:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h: In instantiation of 'bool BamTools::BamAlignment::GetTag(const string&, std::vector<T>&) const [with T = float; std::__cxx11::string = std::__cxx11::basic_string<char>]':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:499:13: required from 'bool BamTools::SplitTool::SplitToolPrivate::SplitListTagImpl(BamTools::BamAlignment&) [with T = float]'
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_split.cpp:421:94: required from here
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:582:9: warning: variable 'elementLength' set but not used [-Wunused-but-set-variable]
[ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools_stats.cpp
[ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit/bamtools.cpp
[100%] Linking CXX executable ../../bin/bamtools
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wl,-z,relro -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o ../../bin/bamtools-2.4.1 -Wl,-rpath,/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/lib: ../../lib/libbamtools-utils.a -ljsoncpp ../../lib/libbamtools.so.2.4.0 -lz
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_symlink_executable ../../bin/bamtools-2.4.1 ../../bin/bamtools
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
dh_auto_test -a -O--parallel
make -j4 test ARGS\+=-j4
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf
Start 1: bamtools_help
Start 2: bamtools_stats
1/2 Test #1: bamtools_help .................... Passed 0.01 sec
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100% tests passed, 0 tests failed out of 2
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make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --parallel
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make -j4 install DESTDIR=/<<BUILDDIR>>/bamtools-2.4.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/bamtools-2.4.1+dfsg -B/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
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make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools-static.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Built target BamTools-static
[ 79%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/utils /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/toolkit /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/lib/libbamtools.so
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/lib/libbamtools.a
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/bin/bamtools-2.4.1
-- Installing: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/bin/bamtools
-- Set runtime path of "/<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/bin/bamtools-2.4.1" to ""
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg'
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/lib*.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/bamtools-2.4.1+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.4.0
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
dh_install --arch
# no need to install different versions of bamtools
rm -rf debian/bamtools/usr/bin/bamtools
mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg'
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dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0 found in none of the libraries
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against libz.so.1 (it uses none of the library's symbols)
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'bamtools' in '../bamtools_2.4.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.4.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libbamtools2.4.0-dbgsym' in '../libbamtools2.4.0-dbgsym_2.4.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.4.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libbamtools2.4.0' in '../libbamtools2.4.0_2.4.1+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../bamtools_2.4.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bamtools-2.4.1+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-10-03T02:23:59Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bamtools_2.4.1+dfsg-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Mon, 07 Aug 2017 17:01:19 -0400
Source: bamtools
Binary: bamtools libbamtools-dev libbamtools2.4.0 libbamtools-doc
Architecture: armhf
Version: 2.4.1+dfsg-2
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Nadiya Sitdykova <rovenskasa@gmail.com>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools-doc - docs for dynamic library for manipulating BAM (genome alignment)
libbamtools2.4.0 - dynamic library for manipulating BAM (genome alignment) files
Changes:
bamtools (2.4.1+dfsg-2) unstable; urgency=medium
.
* Team upload.
.
[ Nadiya Sitdykova ]
* add autopkgtest test-suite
.
[ Afif Elghraoui ]
* remove unused lintian overrides
.
[ Steffen Moeller ]
* debian/upstream/metadata: Added refs to bio.tools and OMICtools
* debian/copyright: Corrected case of upstream name
* debian/control: Updated policy compliance to 4.0.1
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bamtools-dbgsym_2.4.1+dfsg-2_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 2546888 bytes: control archive=459 bytes.
385 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: bamtools-dbgsym
Source: bamtools
Version: 2.4.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2604
Depends: bamtools (= 2.4.1+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for bamtools
Build-Ids: 6e948c4bbabe27cb5a7bfb9c9ccf97730bfe81d1
drwxr-xr-x root/root 0 2017-08-07 21:01 ./
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/debug/.build-id/6e/
-rw-r--r-- root/root 2655556 2017-08-07 21:01 ./usr/lib/debug/.build-id/6e/948c4bbabe27cb5a7bfb9c9ccf97730bfe81d1.debug
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-08-07 21:01 ./usr/share/doc/bamtools-dbgsym -> bamtools
bamtools_2.4.1+dfsg-2_armhf.deb
-------------------------------
new debian package, version 2.0.
size 163196 bytes: control archive=1451 bytes.
1812 bytes, 37 lines control
622 bytes, 9 lines md5sums
Package: bamtools
Version: 2.4.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 532
Depends: libbamtools2.4.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libjsoncpp1 (>= 1.7.4), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
drwxr-xr-x root/root 0 2017-08-07 21:01 ./
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/bin/
-rwxr-xr-x root/root 522768 2017-08-07 21:01 ./usr/bin/bamtools
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/doc/bamtools/
-rw-r--r-- root/root 262 2017-08-07 21:01 ./usr/share/doc/bamtools/README.test
-rw-r--r-- root/root 1622 2017-08-07 21:01 ./usr/share/doc/bamtools/changelog.Debian.gz
-rw-r--r-- root/root 1665 2017-08-07 21:01 ./usr/share/doc/bamtools/copyright
-rw-r--r-- root/root 352 2017-08-07 21:01 ./usr/share/doc/bamtools/filter_script
-rw-r--r-- root/root 970 2017-08-07 21:01 ./usr/share/doc/bamtools/run-unit-test
-rw-r--r-- root/root 375 2016-03-06 08:39 ./usr/share/doc/bamtools/sam_spec_example.bam
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/lintian/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 71 2016-03-06 08:39 ./usr/share/lintian/overrides/bamtools
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/man/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2017-08-07 21:01 ./usr/share/man/man1/bamtools.1.gz
libbamtools-dev_2.4.1+dfsg-2_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 207152 bytes: control archive=1511 bytes.
900 bytes, 22 lines control
1879 bytes, 25 lines md5sums
Package: libbamtools-dev
Source: bamtools
Version: 2.4.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1110
Depends: libbamtools2.4.0 (= 2.4.1+dfsg-2), zlib1g-dev
Suggests: libbamtools-doc (= 2.4.1+dfsg-2)
Section: libdevel
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
drwxr-xr-x root/root 0 2017-08-07 21:01 ./
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/include/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/include/bamtools/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/include/bamtools/api/
-rw-r--r-- root/root 847 2016-07-05 14:22 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root 23779 2017-08-07 21:01 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root 15082 2017-08-07 21:01 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root 9682 2016-07-05 14:22 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root 2885 2016-07-05 14:22 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root 4676 2016-07-05 14:22 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root 4285 2016-07-05 14:22 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root 2208 2016-07-05 14:22 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root 3022 2016-07-05 14:22 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root 3725 2016-07-05 14:22 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root 2959 2016-07-05 14:22 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root 2389 2016-07-05 14:22 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root 3127 2016-07-05 14:22 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root 3449 2016-07-05 14:22 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root 3281 2016-07-05 14:22 ./usr/include/bamtools/api/SamReadGroupDictionary.h
-rw-r--r-- root/root 2567 2016-07-05 14:22 ./usr/include/bamtools/api/SamSequence.h
-rw-r--r-- root/root 3248 2016-07-05 14:22 ./usr/include/bamtools/api/SamSequenceDictionary.h
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/include/bamtools/api/algorithms/
-rw-r--r-- root/root 12112 2016-07-05 14:22 ./usr/include/bamtools/api/algorithms/Sort.h
-rw-r--r-- root/root 757 2016-07-05 14:22 ./usr/include/bamtools/api/api_global.h
-rw-r--r-- root/root 852 2017-08-07 21:01 ./usr/include/bamtools/bamtools_version.h
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/include/bamtools/shared/
-rw-r--r-- root/root 2790 2016-07-05 14:22 ./usr/include/bamtools/shared/bamtools_global.h
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 995690 2017-08-07 21:01 ./usr/lib/arm-linux-gnueabihf/libbamtools.a
lrwxrwxrwx root/root 0 2017-08-07 21:01 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.4.0
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/
drwxr-xr-x root/root 0 2015-05-03 02:52 ./usr/share/cmake/
drwxr-xr-x root/root 0 2015-05-03 02:52 ./usr/share/cmake/bamtools/
-rw-r--r-- root/root 1574 2015-05-03 02:52 ./usr/share/cmake/bamtools/bamtools-config.cmake
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/doc/libbamtools-dev/
-rw-r--r-- root/root 1622 2017-08-07 21:01 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz
-rw-r--r-- root/root 1665 2017-08-07 21:01 ./usr/share/doc/libbamtools-dev/copyright
libbamtools2.4.0-dbgsym_2.4.1+dfsg-2_armhf.deb
----------------------------------------------
new debian package, version 2.0.
size 2099554 bytes: control archive=469 bytes.
409 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: libbamtools2.4.0-dbgsym
Source: bamtools
Version: 2.4.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2165
Depends: libbamtools2.4.0 (= 2.4.1+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for libbamtools2.4.0
Build-Ids: 66afa73a7106b4c3da805c927b73946fa83d9939
drwxr-xr-x root/root 0 2017-08-07 21:01 ./
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/debug/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/debug/.build-id/66/
-rw-r--r-- root/root 2206292 2017-08-07 21:01 ./usr/lib/debug/.build-id/66/afa73a7106b4c3da805c927b73946fa83d9939.debug
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/doc/
lrwxrwxrwx root/root 0 2017-08-07 21:01 ./usr/share/doc/libbamtools2.4.0-dbgsym -> libbamtools2.4.0
libbamtools2.4.0_2.4.1+dfsg-2_armhf.deb
---------------------------------------
new debian package, version 2.0.
size 155686 bytes: control archive=953 bytes.
886 bytes, 21 lines control
243 bytes, 3 lines md5sums
35 bytes, 1 lines shlibs
65 bytes, 2 lines triggers
Package: libbamtools2.4.0
Source: bamtools
Version: 2.4.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 507
Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
drwxr-xr-x root/root 0 2017-08-07 21:01 ./
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 504016 2017-08-07 21:01 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/doc/
drwxr-xr-x root/root 0 2017-08-07 21:01 ./usr/share/doc/libbamtools2.4.0/
-rw-r--r-- root/root 1622 2017-08-07 21:01 ./usr/share/doc/libbamtools2.4.0/changelog.Debian.gz
-rw-r--r-- root/root 1665 2017-08-07 21:01 ./usr/share/doc/libbamtools2.4.0/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 97312
Build-Time: 160
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 284
Job: bamtools_2.4.1+dfsg-2
Machine Architecture: armhf
Package: bamtools
Package-Time: 460
Source-Version: 2.4.1+dfsg-2
Space: 97312
Status: successful
Version: 2.4.1+dfsg-2
--------------------------------------------------------------------------------
Finished at 2017-10-03T02:23:59Z
Build needed 00:07:40, 97312k disk space