bamtools →
2.4.1+dfsg-2 →
armhf → 2017-08-16 05:23:09
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| bamtools 2.4.1+dfsg-2 (armhf) Wed, 16 Aug 2017 05:13:42 +0000 |
+==============================================================================+
Package: bamtools
Version: 2.4.1+dfsg-2
Source Version: 2.4.1+dfsg-2
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-a6c93cfe-fe68-4de4-bb2c-8ec0d645c005' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.1 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.0 MB]
Fetched 22.1 MB in 24s (898 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/bamtools.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/bamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 216 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main bamtools 2.4.1+dfsg-2 (dsc) [2407 B]
Get:2 http://172.17.0.1/private buster-staging/main bamtools 2.4.1+dfsg-2 (tar) [202 kB]
Get:3 http://172.17.0.1/private buster-staging/main bamtools 2.4.1+dfsg-2 (diff) [11.8 kB]
Fetched 216 kB in 0s (473 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/bamtools-Gl7Adl/bamtools-2.4.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bamtools-Gl7Adl' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-6w7ZY2/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-6w7ZY2/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (3235 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 32 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 772 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14837 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
Filtered Build-Depends: debhelper (>= 10), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-bamtools-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ Sources [535 B]
Get:5 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ Packages [613 B]
Fetched 2481 B in 0s (3402 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install bamtools build dependencies (apt-based resolver)
--------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file
gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libbsd0 libclang1-4.0 libcroco3 libcurl3 libedit2 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu57
libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libldap-common libllvm4.0
liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db
libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl libtool libuv1
libxapian30 libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation ninja-build dh-make doxygen-latex doxygen-doc doxygen-gui graphviz
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user
libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc less
www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev
xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file
gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libbsd0 libclang1-4.0 libcroco3 libcurl3 libedit2 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libicu57
libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libldap-common libllvm4.0
liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14
libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db
libsigsegv2 libssh2-1 libssl1.0.2 libtimedate-perl libtool libuv1
libxapian30 libxml2 m4 man-db po-debconf sbuild-build-depends-bamtools-dummy
zlib1g-dev
0 upgraded, 63 newly installed, 0 to remove and 32 not upgraded.
Need to get 46.0 MB of archives.
After this operation, 172 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-6w7ZY2/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [820 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf liblocale-gettext-perl armhf 1.07-3+b2 [18.3 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf cmake-data all 3.9.0-1 [1294 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-3 [601 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libarchive13 armhf 3.2.2-2 [254 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-2 [58.4 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-2 [115 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-2 [265 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-2 [132 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3 [66.9 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3 [98.1 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libldap-common all 2.4.45+dfsg-1 [87.0 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libldap-2.4-2 armhf 2.4.45+dfsg-1 [197 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.24.0-1 [70.4 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.17.0-5 [42.0 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-1 [126 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2l-2 [893 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.52.1-5 [261 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libjsoncpp1 armhf 1.7.4-3 [66.2 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf librhash0 armhf 1.3.4-2 [94.5 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libuv1 armhf 1.9.1-3 [73.2 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf cmake armhf 3.9.0-1 [2509 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libxapian30 armhf 1.4.4-2 [952 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.31-1 [223 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.31-1 [105 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.31-1 [63.5 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-2+b1 [117 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libedit2 armhf 3.1-20170329-1 [69.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2 [736 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf d-shlibs all 0.81 [18.7 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.53.4-3 [2628 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-2+b1 [1220 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.7.2 [975 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libllvm4.0 armhf 1:4.0.1-1+rpi1 [10.6 MB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libclang1-4.0 armhf 1:4.0.1-1+rpi1 [5209 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf doxygen armhf 1.8.13-8 [3276 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf help2man armhf 1.47.4 [162 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-5 [198 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libjsoncpp-dev armhf 1.7.4-3 [78.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 46.0 MB in 5s (7814 kB/s)
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 14837 files and directories currently installed.)
Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b2_armhf.deb ...
Unpacking liblocale-gettext-perl (1.07-3+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../01-groff-base_1.22.3-9_armhf.deb ...
Unpacking groff-base (1.22.3-9) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../02-libbsd0_0.8.6-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.6-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../03-bsdmainutils_9.0.12+nmu1_armhf.deb ...
Unpacking bsdmainutils (9.0.12+nmu1) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../04-libpipeline1_1.4.2-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.2-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../05-man-db_2.7.6.1-2_armhf.deb ...
Unpacking man-db (2.7.6.1-2) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../06-cmake-data_3.9.0-1_all.deb ...
Unpacking cmake-data (3.9.0-1) ...
Selecting previously unselected package liblzo2-2:armhf.
Preparing to unpack .../07-liblzo2-2_2.08-1.2_armhf.deb ...
Unpacking liblzo2-2:armhf (2.08-1.2) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../08-libicu57_57.1-6_armhf.deb ...
Unpacking libicu57:armhf (57.1-6) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../09-libxml2_2.9.4+dfsg1-3_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-3) ...
Selecting previously unselected package libarchive13:armhf.
Preparing to unpack .../10-libarchive13_3.2.2-2_armhf.deb ...
Unpacking libarchive13:armhf (3.2.2-2) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../11-libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../12-libkrb5support0_1.15.1-2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.15.1-2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../13-libk5crypto3_1.15.1-2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.15.1-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../14-libkrb5-3_1.15.1-2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.15.1-2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../15-libgssapi-krb5-2_1.15.1-2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.15.1-2) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../16-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../17-libsasl2-2_2.1.27~101-g0780600+dfsg-3_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3) ...
Selecting previously unselected package libldap-common.
Preparing to unpack .../18-libldap-common_2.4.45+dfsg-1_all.deb ...
Unpacking libldap-common (2.4.45+dfsg-1) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../19-libldap-2.4-2_2.4.45+dfsg-1_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.45+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../20-libnghttp2-14_1.24.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.24.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../21-libpsl5_0.17.0-5_armhf.deb ...
Unpacking libpsl5:armhf (0.17.0-5) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../22-librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../23-libssh2-1_1.8.0-1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-1) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../24-libssl1.0.2_1.0.2l-2_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2l-2) ...
Selecting previously unselected package libcurl3:armhf.
Preparing to unpack .../25-libcurl3_7.52.1-5_armhf.deb ...
Unpacking libcurl3:armhf (7.52.1-5) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../26-libexpat1_2.2.3-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.3-1) ...
Selecting previously unselected package libjsoncpp1:armhf.
Preparing to unpack .../27-libjsoncpp1_1.7.4-3_armhf.deb ...
Unpacking libjsoncpp1:armhf (1.7.4-3) ...
Selecting previously unselected package librhash0.
Preparing to unpack .../28-librhash0_1.3.4-2_armhf.deb ...
Unpacking librhash0 (1.3.4-2) ...
Selecting previously unselected package libuv1:armhf.
Preparing to unpack .../29-libuv1_1.9.1-3_armhf.deb ...
Unpacking libuv1:armhf (1.9.1-3) ...
Selecting previously unselected package cmake.
Preparing to unpack .../30-cmake_3.9.0-1_armhf.deb ...
Unpacking cmake (3.9.0-1) ...
Selecting previously unselected package libxapian30:armhf.
Preparing to unpack .../31-libxapian30_1.4.4-2_armhf.deb ...
Unpacking libxapian30:armhf (1.4.4-2) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../32-libmagic-mgc_1%3a5.31-1_armhf.deb ...
Unpacking libmagic-mgc (1:5.31-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../33-libmagic1_1%3a5.31-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.31-1) ...
Selecting previously unselected package file.
Preparing to unpack .../34-file_1%3a5.31-1_armhf.deb ...
Unpacking file (1:5.31-1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../35-gettext-base_0.19.8.1-2+b1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-2+b1) ...
Selecting previously unselected package libedit2:armhf.
Preparing to unpack .../36-libedit2_3.1-20170329-1_armhf.deb ...
Unpacking libedit2:armhf (3.1-20170329-1) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../37-libsigsegv2_2.11-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.11-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../38-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../39-autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../40-autotools-dev_20161112.1_all.deb ...
Unpacking autotools-dev (20161112.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../41-automake_1%3a1.15.1-2_all.deb ...
Unpacking automake (1:1.15.1-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../42-autopoint_0.19.8.1-2_all.deb ...
Unpacking autopoint (0.19.8.1-2) ...
Selecting previously unselected package d-shlibs.
Preparing to unpack .../43-d-shlibs_0.81_all.deb ...
Unpacking d-shlibs (0.81) ...
Selecting previously unselected package libtool.
Preparing to unpack .../44-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../45-dh-autoreconf_14_all.deb ...
Unpacking dh-autoreconf (14) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../46-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../47-libfile-stripnondeterminism-perl_0.038-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.038-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../48-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../49-dh-strip-nondeterminism_0.038-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.038-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../50-libglib2.0-0_2.53.4-3_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.53.4-3) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../51-libcroco3_0.6.12-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../52-gettext_0.19.8.1-2+b1_armhf.deb ...
Unpacking gettext (0.19.8.1-2+b1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../53-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../54-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../55-debhelper_10.7.2_all.deb ...
Unpacking debhelper (10.7.2) ...
Selecting previously unselected package libllvm4.0:armhf.
Preparing to unpack .../56-libllvm4.0_1%3a4.0.1-1+rpi1_armhf.deb ...
Unpacking libllvm4.0:armhf (1:4.0.1-1+rpi1) ...
Selecting previously unselected package libclang1-4.0:armhf.
Preparing to unpack .../57-libclang1-4.0_1%3a4.0.1-1+rpi1_armhf.deb ...
Unpacking libclang1-4.0:armhf (1:4.0.1-1+rpi1) ...
Selecting previously unselected package doxygen.
Preparing to unpack .../58-doxygen_1.8.13-8_armhf.deb ...
Unpacking doxygen (1.8.13-8) ...
Selecting previously unselected package help2man.
Preparing to unpack .../59-help2man_1.47.4_armhf.deb ...
Unpacking help2man (1.47.4) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../60-zlib1g-dev_1%3a1.2.8.dfsg-5_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Selecting previously unselected package libjsoncpp-dev:armhf.
Preparing to unpack .../61-libjsoncpp-dev_1.7.4-3_armhf.deb ...
Unpacking libjsoncpp-dev:armhf (1.7.4-3) ...
Selecting previously unselected package sbuild-build-depends-bamtools-dummy.
Preparing to unpack .../62-sbuild-build-depends-bamtools-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-bamtools-dummy (0.invalid.0) ...
Setting up libxapian30:armhf (1.4.4-2) ...
Setting up libexpat1:armhf (2.2.3-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libnghttp2-14:armhf (1.24.0-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up libldap-common (2.4.45+dfsg-1) ...
Setting up libuv1:armhf (1.9.1-3) ...
Setting up libpsl5:armhf (0.17.0-5) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.53.4-3) ...
No schema files found: doing nothing.
Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3) ...
Setting up d-shlibs (0.81) ...
Setting up gettext-base (0.19.8.1-2+b1) ...
Setting up cmake-data (3.9.0-1) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-6) ...
Setting up libbsd0:armhf (0.8.6-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-3) ...
Setting up libmagic-mgc (1:5.31-1) ...
Setting up libmagic1:armhf (1:5.31-1) ...
Setting up librhash0 (1.3.4-2) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Setting up libssl1.0.2:armhf (1.0.2l-2) ...
Setting up libssh2-1:armhf (1.8.0-1) ...
Processing triggers for libc-bin (2.24-12) ...
Setting up autotools-dev (20161112.1) ...
Setting up libldap-2.4-2:armhf (2.4.45+dfsg-1) ...
Setting up liblocale-gettext-perl (1.07-3+b2) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up autopoint (0.19.8.1-2) ...
Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.038-1) ...
Setting up libjsoncpp1:armhf (1.7.4-3) ...
Setting up libjsoncpp-dev:armhf (1.7.4-3) ...
Setting up libedit2:armhf (3.1-20170329-1) ...
Setting up gettext (0.19.8.1-2+b1) ...
Setting up libarchive13:armhf (3.2.2-2) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.31-1) ...
Setting up libkrb5support0:armhf (1.15.1-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libllvm4.0:armhf (1:4.0.1-1+rpi1) ...
Setting up libclang1-4.0:armhf (1:4.0.1-1+rpi1) ...
Setting up automake (1:1.15.1-2) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up help2man (1.47.4) ...
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up libk5crypto3:armhf (1.15.1-2) ...
Setting up po-debconf (1.0.20) ...
Setting up doxygen (1.8.13-8) ...
Setting up libkrb5-3:armhf (1.15.1-2) ...
Setting up libgssapi-krb5-2:armhf (1.15.1-2) ...
Setting up libcurl3:armhf (7.52.1-5) ...
Setting up cmake (3.9.0-1) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up debhelper (10.7.2) ...
Setting up dh-autoreconf (14) ...
Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-12) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1+rpi1 gcc-6_6.4.0-1+rpi1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.5~beta1+b3 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 cmake_3.9.0-1 cmake-data_3.9.0-1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1+rpi1 d-shlibs_0.81 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.7.2 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 doxygen_1.8.13-8 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-3.1 file_1:5.31-1 findutils_4.6.0+git+20170606-3 g++_4:6.3.0-4d1 g++-6_6.4.0-1+rpi1 gcc_4:6.3.0-4d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6_6.4.0-1+rpi1 gcc-6-base_6.4.0-1+rpi1 gcc-7-base_7.1.0-9+rpi1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 help2man_1.47.4 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-6 libapt-pkg5.0_1.5~beta1+b3 libarchive-zip-perl_1.59-1 libarchive13_3.2.2-2 libasan3_6.4.0-1+rpi1 libassuan0_2.4.3-2 libatomic1_7.1.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1 libblkid1_2.29.2-2+rpi1 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-9+rpi1 libclang1-4.0_1:4.0.1-1+rpi1 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libcurl3_7.52.1-5 libdb5.3_5.3.28-12 libdbus-1-3_1.10.20-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm2_2.4.81-2+rpi1 libedit2_3.1-20170329-1 libexpat1_2.2.3-1 libfakeroot_1.21-3.1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-6-dev_6.4.0-1+rpi1 libgcc1_1:7.1.0-9+rpi1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-9+rpi1 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15.1-2 libhogweed4_3.3-1 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2 libisl15_0.18-1 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 libllvm4.0_1:4.0.1-1+rpi1 liblocale-gettext-perl_1.07-3+b2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnghttp2-14_1.24.0-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-3 libperl5.24_5.24.1-7 libperl5.26_5.26.0-4 libpipeline1_1.4.2-1 libplymouth4_0.9.2-4 libpng16-16_1.6.30-2 libprocps6_2:3.3.12-3 libpsl5_0.17.0-5 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 librhash0_1.3.4-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.4-2 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 libsystemd0_233-10 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.1.0-9+rpi1 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libuv1_1.9.1-3 libxapian30_1.4.4-2 libxml2_2.9.4+dfsg1-3 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-12 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-3 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-4 perl-base_5.26.0-4 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-4 pinentry-curses_1.0.0-2 plymouth_0.9.2-4 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 systemd_233-10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_233-10 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Aug 8 16:21:13 2017 UTC
gpgv: using RSA key EAB723A266F627E68055615F59B2306F3AF9DDC1
gpgv: issuer "afif@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./bamtools_2.4.1+dfsg-2.dsc
dpkg-source: info: extracting bamtools in /<<BUILDDIR>>/bamtools-2.4.1+dfsg
dpkg-source: info: unpacking bamtools_2.4.1+dfsg.orig.tar.gz
dpkg-source: info: unpacking bamtools_2.4.1+dfsg-2.debian.tar.xz
dpkg-source: info: applying doxygen-tweak
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying non-deprecated-jsoncpp-function-names
dpkg-source: info: applying 0002-support-out-of-source-build.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch
dpkg-source: info: applying 0006-Doxygen-reproducibility
dpkg-source: info: applying 0007-Big_Endian.patch
dpkg-source: info: applying 0008_Cmake_Test.patch
dpkg-source: info: applying spelling
dpkg-source: info: applying fix_soversion.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-a6c93cfe-fe68-4de4-bb2c-8ec0d645c005
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package bamtools
dpkg-buildpackage: info: source version 2.4.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build bamtools-2.4.1+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_auto_clean
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch --parallel
dh_update_autotools_config -a -O--parallel
dh_autoreconf -a -O--parallel
dh_auto_configure -a -O--parallel
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-- The C compiler identification is GNU 6.4.0
-- The CXX compiler identification is GNU 6.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a -O--parallel
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/bamtools-2.4.1+dfsg -B/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.1+dfsg /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-static
Scanning dependencies of target BamTools
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
[ 2%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamMultiReader.cpp
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.cpp
[ 3%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.cpp
[ 4%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamMultiReader.cpp
[ 5%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamReader.cpp
[ 6%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamReader.cpp
[ 7%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamWriter.cpp
[ 8%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamWriter.cpp
[ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamHeader.cpp
[ 10%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamHeader.cpp
[ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgram.cpp
[ 12%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgram.cpp
[ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgramChain.cpp
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgram.cpp:140:1: internal compiler error: in prune_unused_types_walk_loc_descr, at dwarf2out.c:25804
}
^
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-6/README.Bugs> for instructions.
[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamReadGroup.cpp
[ 15%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamProgramChain.cpp
The bug is not reproducible, so it is likely a hardware or OS problem.
src/api/CMakeFiles/BamTools-static.dir/build.make:185: recipe for target 'src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o' failed
make[3]: *** [src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
[ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamReadGroupDictionary.cpp
[ 17%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamSequence.cpp
[ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/SamSequenceDictionary.cpp
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
CMakeFiles/Makefile2:116: recipe for target 'src/api/CMakeFiles/BamTools-static.dir/all' failed
make[2]: *** [src/api/CMakeFiles/BamTools-static.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 19%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 24%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamFile_p.cpp
In file included from /usr/include/c++/6/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator<BamTools::Internal::BtiBlock>]':
/usr/include/c++/6/bits/vector.tcc:326:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiBlock>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/6/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)':
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator<BamTools::Internal::BtiReferenceSummary>]':
/usr/include/c++/6/bits/vector.tcc:326:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BtiReferenceSummary>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10:
/usr/include/c++/6/bits/stl_vector.h: In member function 'void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)':
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiReferenceSummary*, std::vector<BamTools::Internal::BtiReferenceSummary> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h: In member function 'virtual bool BamTools::Internal::BamToolsIndex::Create()':
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BtiBlock*, std::vector<BamTools::Internal::BtiBlock> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamFtp_p.cpp
In file included from /usr/include/c++/6/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = long long int; _Alloc = std::allocator<long long int>]':
/usr/include/c++/6/bits/vector.tcc:326:5: note: parameter passing for argument of type 'std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:326:5: note: parameter passing for argument of type 'std::vector<long long int>::iterator {aka __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/6/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set<short unsigned int>&, std::vector<long long int>&)':
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator<BamTools::Internal::BaiAlignmentChunk>]':
/usr/include/c++/6/bits/vector.tcc:326:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/vector.tcc:326:5: note: parameter passing for argument of type 'std::vector<BamTools::Internal::BaiAlignmentChunk>::iterator {aka __gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >}' will change in GCC 7.1
In file included from /usr/include/c++/6/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/6/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)':
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)':
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_vector.h:926:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<BamTools::Internal::BaiAlignmentChunk*, std::vector<BamTools::Internal::BaiAlignmentChunk> >' will change in GCC 7.1
_M_insert_aux(end(), __x);
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:69:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/6/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]':
/usr/include/c++/6/bits/vector.tcc:449:5: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}' will change in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/6/vector:64:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAux.h:18,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/BamAlignment.h:14,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10:
/usr/include/c++/6/bits/stl_vector.h: In member function 'void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)':
/usr/include/c++/6/bits/stl_vector.h:1074:9: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}' will change in GCC 7.1
{ _M_fill_insert(__position, __n, __x); }
^~~~~~~~~~~~~~
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:761:1: note: parameter passing for argument of type 'std::vector<long long unsigned int>::iterator {aka __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >}' will change in GCC 7.1
}
^
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
[ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamHttp_p.cpp
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)':
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long int*, std::vector<long long int> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
In file included from /usr/include/c++/6/bits/stl_algo.h:61:0,
from /usr/include/c++/6/algorithm:62,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/6/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_heap.h:209:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' will change in GCC 7.1
__adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
^~~~~~~~~~~~~
In file included from /usr/include/c++/6/algorithm:62:0,
from /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:21:
/usr/include/c++/6/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' will change in GCC 7.1
__introsort_loop(_RandomAccessIterator __first,
^~~~~~~~~~~~~~~~
/usr/include/c++/6/bits/stl_algo.h:1937:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' will change in GCC 7.1
/usr/include/c++/6/bits/stl_algo.h:1951:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' will change in GCC 7.1
std::__introsort_loop(__cut, __last, __depth_limit, __comp);
^~~
/usr/include/c++/6/bits/stl_algo.h: In member function 'void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)':
/usr/include/c++/6/bits/stl_algo.h:1965:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >' will change in GCC 7.1
std::__introsort_loop(__first, __last,
^~~
[ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 32%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 34%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 35%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostInfo_p.cpp
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp: In member function 'std::__cxx11::string BamTools::Internal::HostAddress::GetIPString() const':
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp:325:13: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
if ( i != 0 )
^~
/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HostAddress_p.cpp:327:17: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the 'if'
ss << hex << ( (uint16_t(m_ip6Address[2*i]) << 8) |
^~
[ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 39%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 41%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 43%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.1+dfsg/src/api/internal/utils/BamException_p.cpp
[ 46%] Linking CXX shared library ../../lib/libbamtools.so
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/bamtools-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.4.0 -o ../../lib/libbamtools.so.2.4.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz
cd /<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
[ 46%] Built target BamTools
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
Makefile:143: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.1+dfsg/obj-arm-linux-gnueabihf'
dh_auto_build: make -j4 returned exit code 2
debian/rules:10: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 2017-08-16T05:23:04Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 0
Build-Time: 185
Distribution: buster-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 329
Job: bamtools_2.4.1+dfsg-2
Machine Architecture: armhf
Package: bamtools
Package-Time: 562
Source-Version: 2.4.1+dfsg-2
Space: 0
Status: failed
Version: 2.4.1+dfsg-2
--------------------------------------------------------------------------------
Finished at 2017-08-16T05:23:04Z
Build needed 00:00:00, 0k disc space