bamtools →
2.4.0+dfsg-6 →
armhf → 2016-03-16 04:45:10
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testwandboard
+==============================================================================+
| bamtools 2.4.0+dfsg-6 (armhf) 16 Mar 2016 04:29 |
+==============================================================================+
Package: bamtools
Version: 2.4.0+dfsg-6
Source Version: 2.4.0+dfsg-6
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/bamtools-lyq1ME/bamtools-2.4.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bamtools-lyq1ME' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-1d027360-b4cc-4c85-85d4-de613727bc46' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8806 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/bamtools.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/bamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 171 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-6 (dsc) [2318 B]
Get:2 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-6 (tar) [157 kB]
Get:3 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-6 (diff) [11.8 kB]
Fetched 171 kB in 0s (718 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-UPRV84/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-UPRV84/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-UPRV84/apt_archive ./ InRelease
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Get:2 file:/<<BUILDDIR>>/resolver-UPRV84/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-UPRV84/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-UPRV84/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-UPRV84/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-UPRV84/apt_archive ./ Packages [507 B]
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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 71 not upgraded.
Need to get 0 B/768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-UPRV84/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Merged Build-Depends: debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
Filtered Build-Depends: debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<<BUILDDIR>>/resolver-Kuaood/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ Sources [240 B]
Get:5 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ Packages [554 B]
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+------------------------------------------------------------------------------+
| Install bamtools build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autotools-dev bsdmainutils cmake cmake-data cpp-5 d-shlibs debhelper
dh-strip-nondeterminism doxygen file g++-5 gcc-5 gcc-5-base gettext
gettext-base groff-base help2man intltool-debian libarchive-zip-perl
libarchive13 libasan2 libatomic1 libbsd0 libcc1-0 libclang1-3.6 libcroco3
libcurl3 libedit2 libexpat1 libffi6 libfile-stripnondeterminism-perl
libgcc-5-dev libgcc1 libglib2.0-0 libgnutls30 libgomp1 libgssapi-krb5-2
libhogweed4 libicu55 libidn11 libjsoncpp-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libllvm3.6v5
liblocale-gettext-perl liblzo2-2 libmagic1 libnettle6 libnghttp2-14
libobjc-5-dev libobjc4 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libssh2-1 libssl1.0.2 libstdc++-5-dev libstdc++6
libtasn1-6 libtimedate-perl libubsan0 libunistring0 libxml2 man-db
po-debconf zlib1g-dev
Suggested packages:
wamerican | wordlist whois vacation codeblocks eclipse ninja-build
gcc-5-locales dh-make doxygen-latex doxygen-doc doxygen-gui graphviz
gcc-5-doc libstdc++6-5-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg
libatomic1-dbg libasan2-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg
libcilkrts5-dbg libmpx0-dbg libquadmath0-dbg gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff lrzip gnutls-bin krb5-doc krb5-user
libstdc++-5-doc less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper
dh-strip-nondeterminism doxygen file gettext gettext-base groff-base
help2man intltool-debian libarchive-zip-perl libarchive13 libbsd0
libclang1-3.6 libcroco3 libcurl3 libedit2 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libgnutls30 libgssapi-krb5-2
libhogweed4 libicu55 libidn11 libjsoncpp-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libllvm3.6v5
liblocale-gettext-perl liblzo2-2 libmagic1 libnettle6 libnghttp2-14
libobjc-5-dev libobjc4 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libssh2-1 libssl1.0.2 libtasn1-6 libtimedate-perl
libunistring0 libxml2 man-db po-debconf sbuild-build-depends-bamtools-dummy
zlib1g-dev
The following packages will be upgraded:
cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
libgcc1 libgomp1 libstdc++-5-dev libstdc++6 libubsan0
13 upgraded, 60 newly installed, 0 to remove and 58 not upgraded.
Need to get 111 MB/111 MB of archives.
After this operation, 141 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-Kuaood/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [818 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf liblocale-gettext-perl armhf 1.07-1+b1 [18.0 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libgomp1 armhf 5.3.1-11 [47.3 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libatomic1 armhf 5.3.1-11 [6554 B]
Get:5 http://172.17.0.1/private stretch-staging/main armhf gcc-5-base armhf 5.3.1-11 [170 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libgcc1 armhf 1:5.3.1-11 [38.4 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libasan2 armhf 5.3.1-11 [227 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libubsan0 armhf 5.3.1-11 [84.8 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf cpp-5 armhf 5.3.1-11 [22.9 MB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libcc1-0 armhf 5.3.1-11 [24.8 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf g++-5 armhf 5.3.1-11 [24.5 MB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf gcc-5 armhf 5.3.1-11 [22.9 MB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libgcc-5-dev armhf 5.3.1-11 [450 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libstdc++-5-dev armhf 5.3.1-11 [1430 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libstdc++6 armhf 5.3.1-11 [326 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.2-1 [88.0 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libedit2 armhf 3.1-20150325-1 [70.7 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf cmake-data all 3.4.1-2 [1110 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libarchive13 armhf 3.1.2-11+b1 [230 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-8 [11.5 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.13.2+dfsg-5 [56.6 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.13.2+dfsg-5 [110 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.13.2+dfsg-5 [259 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.13.2+dfsg-5 [130 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libidn11 armhf 1.32-3 [110 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-3 [93.3 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.7-3 [44.4 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.9-2 [711 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-14+b1 [65.8 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-14+b1 [97.1 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.8.0-1 [76.7 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d-1+b1 [54.4 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.5.0-2.1 [121 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2g-1 [886 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.47.0-1 [247 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp1 armhf 1.6.5-4 [63.4 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf cmake armhf 3.4.1-2+b1 [2183 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf d-shlibs all 0.66 [16.8 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.016-1 [11.9 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.016-1 [6998 B]
Get:65 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160306 [815 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libllvm3.6v5 armhf 1:3.6.2-3 [6970 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libobjc4 armhf 5.3.1-11 [89.8 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libobjc-5-dev armhf 5.3.1-11 [335 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libclang1-3.6 armhf 1:3.6.2-3 [2945 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf doxygen armhf 1.8.11-1 [3231 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.3 [154 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp-dev armhf 1.6.5-4 [73.6 kB]
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Processing triggers for libc-bin (2.21-7) ...
Setting up liblocale-gettext-perl (1.07-1+b1) ...
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Setting up g++-5 (5.3.1-11) ...
Setting up groff-base (1.22.3-7) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libbsd0:armhf (0.8.2-1) ...
Setting up libedit2:armhf (3.1-20150325-1) ...
Setting up cmake-data (3.4.1-2) ...
Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up libnettle6:armhf (3.2-1) ...
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Setting up libxml2:armhf (2.9.3+dfsg1-1) ...
Setting up libarchive13:armhf (3.1.2-11+b1) ...
Setting up libkeyutils1:armhf (1.5.9-8) ...
Setting up libkrb5support0:armhf (1.13.2+dfsg-5) ...
Setting up libk5crypto3:armhf (1.13.2+dfsg-5) ...
Setting up libkrb5-3:armhf (1.13.2+dfsg-5) ...
Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-5) ...
Setting up libidn11:armhf (1.32-3) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libp11-kit0:armhf (0.23.2-3) ...
Setting up libtasn1-6:armhf (4.7-3) ...
Setting up libgnutls30:armhf (3.4.9-2) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-14+b1) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-14+b1) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up libnghttp2-14:armhf (1.8.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d-1+b1) ...
Setting up libssh2-1:armhf (1.5.0-2.1) ...
Setting up libssl1.0.2:armhf (1.0.2g-1) ...
Setting up libcurl3:armhf (7.47.0-1) ...
Setting up libexpat1:armhf (2.1.0-7) ...
Setting up libjsoncpp1:armhf (1.6.5-4) ...
Setting up cmake (3.4.1-2+b1) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libmagic1:armhf (1:5.25-2) ...
Setting up file (1:5.25-2) ...
Setting up gettext-base (0.19.7-2) ...
Setting up autotools-dev (20150820.1) ...
Setting up d-shlibs (0.66) ...
Setting up libglib2.0-0:armhf (2.46.2-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up gettext (0.19.7-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.016-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libllvm3.6v5:armhf (1:3.6.2-3) ...
Setting up libobjc4:armhf (5.3.1-11) ...
Setting up libobjc-5-dev:armhf (5.3.1-11) ...
Setting up libclang1-3.6:armhf (1:3.6.2-3) ...
Setting up doxygen (1.8.11-1) ...
Setting up help2man (1.47.3) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libjsoncpp-dev:armhf (1.6.5-4) ...
Setting up debhelper (9.20160306) ...
Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.016-1) ...
Processing triggers for libc-bin (2.21-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.3.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-3 dpkg-dev_1.18.4 g++-5_5.3.1-11 gcc-5_5.3.1-11 libc6-dev_2.21-7 libstdc++-5-dev_5.3.1-11 libstdc++6_5.3.1-11 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.2.3 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-3 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 cmake_3.4.1-2+b1 cmake-data_3.4.1-2 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-11 d-shlibs_0.66 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160306 debianutils_4.7 dh-strip-nondeterminism_0.016-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-2 doxygen_1.8.11-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-11 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-11 gcc-5-base_5.3.1-11 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 help2man_1.47.3 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.2 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-3 libapparmor1_2.10-3 libapt-pkg5.0_1.2.3 libarchive-zip-perl_1.56-2 libarchive13_3.1.2-11+b1 libasan2_5.3.1-11 libatomic1_5.3.1-11 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-3 libbsd0_0.8.2-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-11 libclang1-3.6_1:3.6.2-3 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3_7.47.0-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.204 libdevmapper1.02.1_2:1.02.115-2 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libedit2_3.1-20150325-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.016-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-11 libgcc1_1:5.3.1-11 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.9-2 libgomp1_5.3.1-11 libgpg-error0_1.21-1 libgssapi-krb5-2_1.13.2+dfsg-5 libhogweed4_3.2-1 libicu55_55.1-7 libidn11_1.32-3 libisl15_0.16.1-1 libjsoncpp-dev_1.6.5-4 libjsoncpp1_1.6.5-4 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8 libklibc_2.0.4-7+rpi1 libkmod2_22-1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 libllvm3.6v5_1:3.6.2-3 liblocale-gettext-perl_1.07-1+b1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 liblzo2-2_2.08-1.2 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libnettle6_3.2-1 libnghttp2-14_1.8.0-1 libobjc-5-dev_5.3.1-11 libobjc4_5.3.1-11 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-1 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d-1+b1 libsasl2-2_2.1.26.dfsg1-14+b1 libsasl2-modules-db_2.1.26.dfsg1-14+b1 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-3 libss2_1.42.13-1 libssh2-1_1.5.0-2.1 libssl1.0.2_1.0.2g-1 libstdc++-5-dev_5.3.1-11 libstdc++6_5.3.1-11 libsystemd0_228-6 libtasn1-6_4.7-3 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-11 libudev1_228-6 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-1 mawk_1.3.3-17 mount_2.27.1-3 multiarch-support_2.21-7 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-7 plymouth_0.9.2-3 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-6 systemd-sysv_228-6 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-6 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Mar 10 09:39:31 2016 UTC using RSA key ID 6C67E6E2
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bamtools_2.4.0+dfsg-6.dsc
dpkg-source: info: extracting bamtools in bamtools-2.4.0+dfsg
dpkg-source: info: unpacking bamtools_2.4.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking bamtools_2.4.0+dfsg-6.debian.tar.xz
dpkg-source: info: applying doxygen-tweak
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying non-deprecated-jsoncpp-function-names
dpkg-source: info: applying 0002-support-out-of-source-build.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch
dpkg-source: info: applying 0006-Doxygen-reproducibility
dpkg-source: info: applying 0006-Fix-Doxyfile-input-source-path.patch
dpkg-source: info: applying 0007-Big_Endian.patch
dpkg-source: info: applying 0008_Cmake_Test.patch
dpkg-source: info: applying spelling
dpkg-source: info: applying gcc-6_compat
Check disc space
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Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-1d027360-b4cc-4c85-85d4-de613727bc46
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package bamtools
dpkg-buildpackage: source version 2.4.0+dfsg-6
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build bamtools-2.4.0+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
dh_auto_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_auto_configure -a -O--parallel
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-- The C compiler identification is GNU 5.3.1
-- The CXX compiler identification is GNU 5.3.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
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-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a -O--parallel
make -j4
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/bamtools-2.4.0+dfsg -B/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-static
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
Scanning dependencies of target BamTools
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
[ 1%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
[ 2%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 3%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamReader.cpp
[ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp
[ 5%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp
[ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamReader.cpp
[ 7%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp
[ 8%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp
[ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp
[ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp
[ 11%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp
[ 12%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp
[ 13%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
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[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp
[ 15%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o
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[ 18%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp
[ 19%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o
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[ 20%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamSequenceDictionary.cpp
[ 21%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp
[ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamSequenceDictionary.cpp
[ 24%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 25%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 26%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 27%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
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[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
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[ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
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[ 31%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
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[ 33%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o
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[ 34%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o
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[ 36%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o
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[ 37%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 39%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 41%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BamFile_p.cpp
[ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
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[ 43%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 44%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o
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[ 45%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 46%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
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[ 48%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 51%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 52%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 53%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 56%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 58%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 59%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 62%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 63%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 64%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 65%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 66%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 67%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 68%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 69%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 70%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 71%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 72%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 73%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/utils/BamException_p.cpp
[ 74%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 75%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 76%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 77%] Linking CXX shared library ../../lib/libbamtools.so
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.4.0 -o ../../lib/libbamtools.so.2.4.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so
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[ 77%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-utils
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make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils/bamtools_fasta.cpp
[ 79%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils/bamtools_options.cpp
[ 80%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/utils/BamException_p.cpp
[ 81%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils/bamtools_pileup_engine.cpp
[ 82%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils/bamtools_utilities.cpp
[ 83%] Linking CXX static library ../../lib/libbamtools.a
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -P CMakeFiles/BamTools-static.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-static.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libbamtools.a CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o CMakeFiles/BamTools-static.dir/BamReader.cpp.o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
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make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 83%] Built target BamTools-static
[ 84%] Linking CXX static library ../../lib/libbamtools-utils.a
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
/usr/bin/ranlib ../../lib/libbamtools-utils.a
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
Scanning dependencies of target bamtools_cmd
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
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[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_convert.cpp
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_count.cpp
[ 87%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_coverage.cpp
[ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp
[ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_header.cpp
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_index.cpp
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_merge.cpp
[ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_random.cpp
[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_resolve.cpp
[ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_revert.cpp
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_sort.cpp
[ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_split.cpp
[ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_stats.cpp
[ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools.cpp
[100%] Linking CXX executable ../../bin/bamtools
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++98 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o ../../bin/bamtools-2.4.0 -rdynamic ../../lib/libbamtools-utils.a -ljsoncpp ../../lib/libbamtools.so.2.4.0 -lz -Wl,-rpath,/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/lib:
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_symlink_executable ../../bin/bamtools-2.4.0 ../../bin/bamtools
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
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make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf
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make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
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make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
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make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
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make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
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[ 57%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
[ 79%] Built target BamTools-static
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.a
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools-2.4.0
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools
-- Removed runtime path from "/<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools-2.4.0"
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg'
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/lib*.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.4.0
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
dh_install --arch
# no need to install different versions of bamtools
rm -rf debian/bamtools/usr/bin/bamtools
mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg'
dh_installdocs -a -O--parallel
dh_installchangelogs -a -O--parallel
dh_installman -a -O--parallel
dh_lintian -a -O--parallel
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0 found in none of the libraries
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.4.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.4.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'libbamtools2.4.0-dbgsym' in '../libbamtools2.4.0-dbgsym_2.4.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'libbamtools2.4.0' in '../libbamtools2.4.0_2.4.0+dfsg-6_armhf.deb'.
dpkg-deb: building package 'bamtools' in '../bamtools_2.4.0+dfsg-6_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bamtools_2.4.0+dfsg-6_armhf.changes
dpkg-genchanges: warning: package bamtools-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package libbamtools2.4.0-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bamtools-2.4.0+dfsg
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160316-0445
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bamtools_2.4.0+dfsg-6_armhf.changes:
------------------------------------
Format: 1.8
Date: Thu, 10 Mar 2016 01:38:21 -0800
Source: bamtools
Binary: bamtools libbamtools-dev libbamtools2.4.0 libbamtools-doc
Architecture: armhf
Version: 2.4.0+dfsg-6
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Michael R. Crusoe <crusoe@ucdavis.edu>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools-doc - docs for dynamic library for manipulating BAM (genome alignment)
libbamtools2.4.0 - dynamic library for manipulating BAM (genome alignment) files
Closes: 817188
Changes:
bamtools (2.4.0+dfsg-6) unstable; urgency=medium
.
* Whoops, forgot the '+dfsg' in my fix for the movement of the development
docs into their own -doc package. Thanks go to Andreas Beckmann
<anbe@debian.org> for his patience and help. (Closes: 817188)
Checksums-Sha1:
c304003cce17b5b47b1f72b03ead77762075f8b8 2508366 bamtools-dbgsym_2.4.0+dfsg-6_armhf.deb
dd7c8bd97a3359da6338ac5e68540c42d4a8644a 163968 bamtools_2.4.0+dfsg-6_armhf.deb
bad94897a4984ca2ea3a7f6dd2c2ed0157632cf5 212102 libbamtools-dev_2.4.0+dfsg-6_armhf.deb
c21571b0d4f33bc1a710cde79a02b714dd22d81f 2119704 libbamtools2.4.0-dbgsym_2.4.0+dfsg-6_armhf.deb
19940cc67cca8f7689c81724da4a6067366f46cf 159218 libbamtools2.4.0_2.4.0+dfsg-6_armhf.deb
Checksums-Sha256:
1d1085fd6483bc2ba3fb7e6d4e2376b3045030137ba67e6b1bd81110a9ebebf0 2508366 bamtools-dbgsym_2.4.0+dfsg-6_armhf.deb
3a454be7831374898a2affa323ac0fd561e7fbb04fa44623736532a4d6df5f4a 163968 bamtools_2.4.0+dfsg-6_armhf.deb
99416f07cdc37c2f177be0c7dae9577cea405698b392a8b0e09bd4d01bd22b4e 212102 libbamtools-dev_2.4.0+dfsg-6_armhf.deb
c49bfae617903e4ccae3b798f12f011d4bfa814f3f528cd235f0caf7dc0d0196 2119704 libbamtools2.4.0-dbgsym_2.4.0+dfsg-6_armhf.deb
c22a2438c93a5d6046117f988f0cc5067f84490fab513a48bd3cf03f9b0c57f3 159218 libbamtools2.4.0_2.4.0+dfsg-6_armhf.deb
Files:
095964a14c830c9c58377b916222a365 2508366 debug extra bamtools-dbgsym_2.4.0+dfsg-6_armhf.deb
a9b223594c73117e6d40368948efd021 163968 science extra bamtools_2.4.0+dfsg-6_armhf.deb
44b1d45b7e9a5a1ce7df3dc66c5e9d42 212102 libdevel extra libbamtools-dev_2.4.0+dfsg-6_armhf.deb
200b65a35e0a64aa85830d60f27c03ed 2119704 debug extra libbamtools2.4.0-dbgsym_2.4.0+dfsg-6_armhf.deb
f3b62295aeee20d0ed90897a61304b2d 159218 libs extra libbamtools2.4.0_2.4.0+dfsg-6_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bamtools-dbgsym_2.4.0+dfsg-6_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 2508366 bytes: control archive=501 bytes.
437 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: bamtools-dbgsym
Source: bamtools
Version: 2.4.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2563
Depends: bamtools (= 2.4.0+dfsg-6)
Section: debug
Priority: extra
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: Debug symbols for bamtools
Auto-Built-Package: debug-symbols
Build-Ids: bafa18d5fc6ecd531025acce18f0d937963979fd
drwxr-xr-x root/root 0 2016-03-16 04:44 ./
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/debug/.build-id/ba/
-rw-r--r-- root/root 2613508 2016-03-16 04:44 ./usr/lib/debug/.build-id/ba/fa18d5fc6ecd531025acce18f0d937963979fd.debug
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-03-16 04:44 ./usr/share/doc/bamtools-dbgsym -> bamtools
bamtools_2.4.0+dfsg-6_armhf.deb
-------------------------------
new debian package, version 2.0.
size 163968 bytes: control archive=1307 bytes.
1798 bytes, 37 lines control
333 bytes, 5 lines md5sums
Package: bamtools
Version: 2.4.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 516
Depends: libbamtools2.4.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libjsoncpp1, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: extra
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
drwxr-xr-x root/root 0 2016-03-16 04:44 ./
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/bin/
-rwxr-xr-x root/root 510508 2016-03-16 04:44 ./usr/bin/bamtools
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/doc/bamtools/
-rw-r--r-- root/root 1284 2016-03-10 09:38 ./usr/share/doc/bamtools/changelog.Debian.gz
-rw-r--r-- root/root 1665 2016-01-24 17:59 ./usr/share/doc/bamtools/copyright
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/lintian/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 71 2016-01-24 17:59 ./usr/share/lintian/overrides/bamtools
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/man/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2016-03-16 04:44 ./usr/share/man/man1/bamtools.1.gz
libbamtools-dev_2.4.0+dfsg-6_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 212102 bytes: control archive=1509 bytes.
897 bytes, 22 lines control
1879 bytes, 25 lines md5sums
Package: libbamtools-dev
Source: bamtools
Version: 2.4.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1124
Depends: libbamtools2.4.0 (= 2.4.0+dfsg-6), zlib1g-dev
Suggests: libbamtools-doc (= 2.4.0+dfsg-6)
Section: libdevel
Priority: extra
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
drwxr-xr-x root/root 0 2016-03-16 04:44 ./
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/include/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/include/bamtools/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/include/bamtools/api/
-rw-r--r-- root/root 847 2015-06-16 16:50 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root 23779 2016-03-16 04:36 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root 14867 2016-03-16 04:36 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root 9682 2015-06-16 16:50 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root 2885 2015-06-16 16:50 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root 4676 2015-06-16 16:50 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root 4285 2015-06-16 16:50 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root 2208 2015-06-16 16:50 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root 3022 2015-06-16 16:50 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root 3725 2015-06-16 16:50 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root 2959 2015-06-16 16:50 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root 2389 2015-06-16 16:50 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root 3127 2015-06-16 16:50 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root 3449 2015-06-16 16:50 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root 3281 2015-06-16 16:50 ./usr/include/bamtools/api/SamReadGroupDictionary.h
-rw-r--r-- root/root 2567 2015-06-16 16:50 ./usr/include/bamtools/api/SamSequence.h
-rw-r--r-- root/root 3248 2015-06-16 16:50 ./usr/include/bamtools/api/SamSequenceDictionary.h
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/include/bamtools/api/algorithms/
-rw-r--r-- root/root 12112 2015-06-16 16:50 ./usr/include/bamtools/api/algorithms/Sort.h
-rw-r--r-- root/root 757 2015-06-16 16:50 ./usr/include/bamtools/api/api_global.h
-rw-r--r-- root/root 852 2016-03-16 04:37 ./usr/include/bamtools/bamtools_version.h
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/include/bamtools/shared/
-rw-r--r-- root/root 2790 2015-06-16 16:50 ./usr/include/bamtools/shared/bamtools_global.h
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 1009896 2016-03-16 04:44 ./usr/lib/arm-linux-gnueabihf/libbamtools.a
lrwxrwxrwx root/root 0 2016-03-16 04:44 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.4.0
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/
drwxr-xr-x root/root 0 2016-01-24 17:59 ./usr/share/cmake/
drwxr-xr-x root/root 0 2016-01-24 17:59 ./usr/share/cmake/bamtools/
-rw-r--r-- root/root 1574 2016-01-24 17:59 ./usr/share/cmake/bamtools/bamtools-config.cmake
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/doc/libbamtools-dev/
-rw-r--r-- root/root 1284 2016-03-10 09:38 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz
-rw-r--r-- root/root 1665 2016-01-24 17:59 ./usr/share/doc/libbamtools-dev/copyright
libbamtools2.4.0-dbgsym_2.4.0+dfsg-6_armhf.deb
----------------------------------------------
new debian package, version 2.0.
size 2119704 bytes: control archive=508 bytes.
461 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbamtools2.4.0-dbgsym
Source: bamtools
Version: 2.4.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2187
Depends: libbamtools2.4.0 (= 2.4.0+dfsg-6)
Section: debug
Priority: extra
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: Debug symbols for libbamtools2.4.0
Auto-Built-Package: debug-symbols
Build-Ids: bbbf79d248fb6fdf00f4e1b80f0cea185ba25ab0
drwxr-xr-x root/root 0 2016-03-16 04:44 ./
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/debug/.build-id/bb/
-rw-r--r-- root/root 2228424 2016-03-16 04:44 ./usr/lib/debug/.build-id/bb/bf79d248fb6fdf00f4e1b80f0cea185ba25ab0.debug
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-03-16 04:44 ./usr/share/doc/libbamtools2.4.0-dbgsym -> libbamtools2.4.0
libbamtools2.4.0_2.4.0+dfsg-6_armhf.deb
---------------------------------------
new debian package, version 2.0.
size 159218 bytes: control archive=990 bytes.
883 bytes, 21 lines control
322 bytes, 4 lines md5sums
35 bytes, 1 lines shlibs
60 bytes, 2 lines triggers
Package: libbamtools2.4.0
Source: bamtools
Version: 2.4.0+dfsg-6
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 514
Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: libs
Priority: extra
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
drwxr-xr-x root/root 0 2016-03-16 04:44 ./
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 508156 2016-03-16 04:44 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/doc/libbamtools2.4.0/
-rw-r--r-- root/root 1284 2016-03-10 09:38 ./usr/share/doc/libbamtools2.4.0/changelog.Debian.gz
-rw-r--r-- root/root 1665 2016-01-24 17:59 ./usr/share/doc/libbamtools2.4.0/copyright
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/lintian/
drwxr-xr-x root/root 0 2016-03-16 04:44 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 204 2016-03-07 06:52 ./usr/share/lintian/overrides/libbamtools2.4.0
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 99476
Build-Time: 502
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 376
Job: bamtools_2.4.0+dfsg-6
Machine Architecture: armhf
Package: bamtools
Package-Time: 932
Source-Version: 2.4.0+dfsg-6
Space: 99476
Status: successful
Version: 2.4.0+dfsg-6
--------------------------------------------------------------------------------
Finished at 20160316-0445
Build needed 00:15:32, 99476k disc space