bamtools →
2.4.0+dfsg-3 →
armhf → 2015-12-26 04:40:40
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-01
╔══════════════════════════════════════════════════════════════════════════════╗
║ bamtools 2.4.0+dfsg-3 (armhf) 26 Dec 2015 04:25 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bamtools
Version: 2.4.0+dfsg-3
Source Version: 2.4.0+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/bamtools-lX22it/bamtools-2.4.0+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/bamtools-lX22it' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-5becafaf-7216-4476-8209-73831bb62116' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8572 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.6 MB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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Building dependency tree...
Reading state information...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/bamtools.git
Please use:
git clone git://anonscm.debian.org/debian-med/bamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 169 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-3 (dsc) [2279 B]
Get:2 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-3 (tar) [157 kB]
Get:3 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-3 (diff) [9616 B]
Fetched 169 kB in 0s (3144 kB/s)
Download complete and in download only mode
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-CXzNkK/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ Sources [208 B]
Get:5 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ Packages [527 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
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Get:1 file:/«BUILDDIR»/resolver-CXzNkK/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/«BUILDDIR»/resolver-6H4D0s/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
OK
Get:1 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ Release.gpg [299 B]
Get:3 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ Release.gpg [299 B]
Get:4 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ Sources [353 B]
Get:5 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ Packages [613 B]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install bamtools build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
bsdmainutils cmake cmake-data d-shlibs debhelper dh-strip-nondeterminism
doxygen file gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libarchive13 libbsd0 libclang1-3.5 libcroco3 libcurl3
libedit2 libexpat1 libffi6 libfile-stripnondeterminism-perl libglib2.0-0
libgnutls-deb0-28 libgssapi-krb5-2 libhogweed4 libicu55 libidn11
libjsoncpp-dev libjsoncpp0v5 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libllvm3.5v5 liblzo2-2 libmagic1 libnettle6
libnghttp2-14 libobjc-5-dev libobjc4 libp11-kit0 libpipeline1 librtmp1
libsasl2-2 libsasl2-modules-db libssh2-1 libssl1.0.2 libtasn1-6
libtimedate-perl libunistring0 libxapian22v5 libxml2 man-db po-debconf
zlib1g-dev
Suggested packages:
wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make
doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff lrzip gnutls-bin krb5-doc krb5-user
xapian-tools less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cmake cmake-data d-shlibs debhelper dh-strip-nondeterminism
doxygen file gettext gettext-base groff-base help2man intltool-debian
libarchive-zip-perl libarchive13 libbsd0 libclang1-3.5 libcroco3 libcurl3
libedit2 libexpat1 libffi6 libfile-stripnondeterminism-perl libglib2.0-0
libgnutls-deb0-28 libgssapi-krb5-2 libhogweed4 libicu55 libidn11
libjsoncpp-dev libjsoncpp0v5 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libllvm3.5v5 liblzo2-2 libmagic1 libnettle6
libnghttp2-14 libobjc-5-dev libobjc4 libp11-kit0 libpipeline1 librtmp1
libsasl2-2 libsasl2-modules-db libssh2-1 libssl1.0.2 libtasn1-6
libtimedate-perl libunistring0 libxapian22v5 libxml2 man-db po-debconf
sbuild-build-depends-bamtools-dummy zlib1g-dev
0 upgraded, 59 newly installed, 0 to remove and 6 not upgraded.
Need to get 37.8 MB/37.8 MB of archives.
After this operation, 140 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-4 [1084 kB]
Get:2 file:/«BUILDDIR»/resolver-6H4D0s/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [848 B]
Get:3 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.1-1 [86.8 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libedit2 armhf 3.1-20150325-1 [70.7 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf cmake-data all 3.4.1-2 [1110 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.1.1-4 [200 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-6 [7379 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libarchive13 armhf 3.1.2-11+b1 [230 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-8 [11.5 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.13.2+dfsg-4+b1 [56.5 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.13.2+dfsg-4+b1 [110 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.13.2+dfsg-4+b1 [261 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.13.2+dfsg-4+b1 [129 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libidn11 armhf 1.32-3 [110 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.1.1-4 [126 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.1-3 [94.2 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.7-2 [44.3 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libgnutls-deb0-28 armhf 3.3.18-1 [645 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-14+b1 [65.8 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-14+b1 [97.1 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1 [197 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.5.0-2 [70.2 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20150115.gita107cef-1+b1 [54.5 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.5.0-2 [122 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2e-1 [883 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.45.0-1+b1 [242 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp0v5 armhf 0.10.5-1 [66.2 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf cmake armhf 3.4.1-2 [2182 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libxapian22v5 armhf 1.2.21-1.2 [857 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.6-1 [119 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf d-shlibs all 0.62 [16.9 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-1 [2482 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.6-1 [1393 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.18 [248 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.55-1 [97.4 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:51 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20151126 [830 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libllvm3.5v5 armhf 1:3.5.2-3 [6503 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libobjc4 armhf 5.3.1-3+rpi1 [90.1 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libobjc-5-dev armhf 5.3.1-3+rpi1 [335 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libclang1-3.5 armhf 1:3.5.2-3 [2822 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf doxygen armhf 1.8.9.1-6 [2582 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.3 [154 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp-dev armhf 0.10.5-1 [490 kB]
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Processing triggers for libc-bin (2.21-4) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Processing triggers for libc-bin (2.21-4) ...
W: No sandbox user '_apt' on the system, can not drop privileges
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.90.20151209-1 dpkg-dev_1.18.3 g++-5_5.3.1-3+rpi1 gcc-5_5.3.1-3+rpi1 libc6-dev_2.21-4 libstdc++-5-dev_5.3.1-3+rpi1 libstdc++6_5.3.1-3+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.1.4 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.90.20151209-1 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 cmake_3.4.1-2 cmake-data_3.4.1-2 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi3 cpp-5_5.3.1-3+rpi1 d-shlibs_0.62 dash_0.5.7-4 debconf_1.5.58 debconf-i18n_1.5.58 debfoster_2.7-2 debhelper_9.20151126 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.110-2 doxygen_1.8.9.1-6 dpkg_1.18.3 dpkg-dev_1.18.3 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 g++_4:5.2.1-4+rpi3 g++-5_5.3.1-3+rpi1 gcc_4:5.2.1-4+rpi3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1+b1 gcc-4.9-base_4.9.3-5+b1 gcc-5_5.3.1-3+rpi1 gcc-5-base_5.3.1-3+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-6 gpgv_1.4.19-6 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4 help2man_1.47.3 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-4+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2+b2 libapt-pkg4.16_1.0.10.2 libapt-pkg5.0_1.1.4 libarchive-zip-perl_1.55-1 libarchive13_3.1.2-11+b1 libasan2_5.3.1-3+rpi1 libatomic1_5.3.1-3+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4 libaudit1_1:2.4.4-4 libblkid1_2.27.1-1 libbsd0_0.8.1-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-4 libc-dev-bin_2.21-4 libc6_2.21-4 libc6-dev_2.21-4 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-3+rpi1 libclang1-3.5_1:3.5.2-3 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5 libcurl3_7.45.0-1+b1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.200 libdevmapper1.02.1_2:1.02.110-2 libdpkg-perl_1.18.3 libdrm2_2.4.65-3 libedit2_3.1-20150325-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.014-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-3+rpi1 libgcc1_1:5.3.1-3+rpi1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-1 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1 libgomp1_5.3.1-3+rpi1 libgpg-error0_1.20-1 libgssapi-krb5-2_1.13.2+dfsg-4+b1 libhogweed4_3.1.1-4 libicu55_55.1-6 libidn11_1.32-3 libisl13_0.14-2 libisl15_0.15-3 libjsoncpp-dev_0.10.5-1 libjsoncpp0v5_0.10.5-1 libk5crypto3_1.13.2+dfsg-4+b1 libkeyutils1_1.5.9-8 libklibc_2.0.4-4+rpi1 libkmod2_21-1 libkrb5-3_1.13.2+dfsg-4+b1 libkrb5support0_1.13.2+dfsg-4+b1 libldap-2.4-2_2.4.42+dfsg-2+rpi1 libllvm3.5v5_1:3.5.2-3 liblocale-gettext-perl_1.07-1 liblzma5_5.1.1alpha+20120614-2.1 liblzo2-2_2.08-1.2 libmagic1_1:5.25-2 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libnettle6_3.1.1-4 libnghttp2-14_1.5.0-2 libobjc-5-dev_5.3.1-3+rpi1 libobjc4_5.3.1-3+rpi1 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-8 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps4_2:3.3.10-2 libreadline6_6.3-8+b3 librtmp1_2.4+20150115.gita107cef-1+b1 libsasl2-2_2.1.26.dfsg1-14+b1 libsasl2-modules-db_2.1.26.dfsg1-14+b1 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-1 libss2_1.42.13-1 libssh2-1_1.5.0-2 libssl1.0.2_1.0.2e-1 libstdc++-5-dev_5.3.1-3+rpi1 libstdc++6_5.3.1-3+rpi1 libsystemd0_228-2 libtasn1-6_4.7-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-3+rpi1 libudev1_228-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libxapian22v5_1.2.21-1.2 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 manpages_3.74-1 mawk_1.3.3-17 mount_2.27.1-1 multiarch-support_2.21-4 nano_2.4.2-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 po-debconf_1.0.18 procps_2:3.3.10-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-2 systemd-sysv_228-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 udev_228-2 util-linux_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Dec 20 23:52:05 2015 UTC using RSA key ID 62191001
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bamtools_2.4.0+dfsg-3.dsc
dpkg-source: info: extracting bamtools in bamtools-2.4.0+dfsg
dpkg-source: info: unpacking bamtools_2.4.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking bamtools_2.4.0+dfsg-3.debian.tar.xz
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying 0002-support-out-of-source-build.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch
dpkg-source: info: applying 0006-Doxygen-reproducibility
dpkg-source: info: applying 0006-Fix-Doxyfile-input-source-path.patch
dpkg-source: info: applying 0007-Big_Endian.patch
dpkg-source: info: applying 0008_Cmake_Test.patch
Check disc space
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Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-5becafaf-7216-4476-8209-73831bb62116
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package bamtools
dpkg-buildpackage: source version 2.4.0+dfsg-3
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build bamtools-2.4.0+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
dh_auto_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_auto_configure -a -O--parallel
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-- The C compiler identification is GNU 5.3.1
-- The CXX compiler identification is GNU 5.3.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf
debian/rules override_dh_auto_build
make[1]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg'
dh_auto_build
make -j4
make[2]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/«BUILDDIR»/bamtools-2.4.0+dfsg -B/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools
Scanning dependencies of target BamTools-static
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 2%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
[ 2%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
[ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
[ 4%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp
[ 5%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.cpp
[ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.cpp
[ 7%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp
[ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp
[ 9%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp
[ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp
[ 11%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp
[ 12%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp
[ 13%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp
[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp
[ 15%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroup.cpp
[ 16%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp
[ 17%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp
[ 18%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequenceDictionary.cpp
[ 19%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroup.cpp
[ 20%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp
[ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp
[ 23%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 24%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequenceDictionary.cpp
[ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 27%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 30%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 32%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 33%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 34%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 35%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 39%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 40%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamFile_p.cpp
[ 41%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 42%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 43%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamFile_p.cpp
[ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 46%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 48%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 50%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 51%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 53%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 54%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 56%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 58%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 61%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 62%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 63%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 64%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 65%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 66%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 67%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 68%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/utils/BamException_p.cpp
[ 69%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 70%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 71%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 72%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 73%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 74%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 75%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 76%] Linking CXX static library ../../lib/libbamtools.a
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -P CMakeFiles/BamTools-static.dir/cmake_clean_target.cmake
[ 77%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-static.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libbamtools.a CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o CMakeFiles/BamTools-static.dir/BamReader.cpp.o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
/usr/bin/ranlib ../../lib/libbamtools.a
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Built target BamTools-static
[ 78%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/utils/BamException_p.cpp
[ 79%] Linking CXX shared library ../../lib/libbamtools.so
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.4.0 -o ../../lib/libbamtools.so.2.4.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-utils
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 81%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
[ 82%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
[ 82%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o
[ 83%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils/bamtools_fasta.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils/bamtools_options.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils/bamtools_pileup_engine.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils/bamtools_utilities.cpp
[ 84%] Linking CXX static library ../../lib/libbamtools-utils.a
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
/usr/bin/ranlib ../../lib/libbamtools-utils.a
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
Scanning dependencies of target bamtools_cmd
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
[ 87%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_count.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_convert.cpp
[ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_coverage.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp: In member function 'bool BamTools::FilterTool::FilterToolPrivate::ParseScript()':
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp:650:50: warning: 'std::__cxx11::string Json::Reader::getFormatedErrorMessages() const' is deprecated: Use getFormattedErrorMessages() instead. [-Wdeprecated-declarations]
<< reader.getFormatedErrorMessages();
^
In file included from /usr/include/jsoncpp/json/json.h:11:0,
from /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp:19:
/usr/include/jsoncpp/json/reader.h:102:15: note: declared here
std::string getFormatedErrorMessages() const;
^
[ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_header.cpp
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_index.cpp
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_merge.cpp
[ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_random.cpp
[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_resolve.cpp
[ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_revert.cpp
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_sort.cpp
[ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_split.cpp
[ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_stats.cpp
[ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o
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cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_symlink_executable ../../bin/bamtools-2.4.0 ../../bin/bamtools
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/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:174: warning: found \endinternal without matching \internal
Searching for include files...
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Searching for files in directory /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/utils
Reading and parsing tag files
Parsing files
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/algorithms/Sort.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/algorithms/Sort.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/api_global.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlgorithms.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAux.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamConstants.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamIndex.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamIndex.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/IBamIODevice.h...
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/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp:26: warning: Documentation for undefined enum `MergeOrder' found.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:180: warning: documented symbol `bool BamTools::AddTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:290: warning: documented symbol `template< typename T > bool BamTools::AddTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:356: warning: documented symbol `template< typename T > bool BamTools::EditTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:383: warning: documented symbol `template< typename T > bool BamTools::EditTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:408: warning: documented symbol `template< typename T > bool BamTools::GetTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:532: warning: documented symbol `template< typename T > bool BamTools::GetTag' was not declared or defined.
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamConstants.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroup.cpp...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp...
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Building group list...
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Building full member lists recursively...
Adding members to member groups.
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Generating disk names...
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Generating citations page...
Counting data structures...
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/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp:362: warning: Found unknown command `\bold'
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp:365: warning: Found unknown command `\bold'
Adding members to index pages...
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Generating docs for namespace BamTools
Generating docs for compound BamTools::BamAlignment...
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Generating docs for namespace BamTools::Constants
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finalizing index lists...
writing tag file...
lookup cache used 1183/65536 hits=5405 misses=1214
finished...
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make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools-static.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 77%] Built target BamTools
[ 79%] Built target BamTools-static
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.a
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools-2.4.0
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools
-- Removed runtime path from "/«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools-2.4.0"
make[1]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg'
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/lib*.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.4.0
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
dh_install
# no need to install different versions of bamtools
rm -rf debian/bamtools/usr/bin/bamtools
mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools
rm -f debian/libbamtools-dev/usr/share/doc/libbamtools-dev/html/jquery.js
ln -s /usr/share/javascript/jquery/jquery.js debian/libbamtools-dev/usr/share/doc/libbamtools-dev/html/jquery.js
make[1]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg'
dh_installdocs -a -O--parallel
dh_installchangelogs -a -O--parallel
dh_installman -a -O--parallel
dh_lintian -a -O--parallel
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0 found in none of the libraries
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libbamtools-dev: unused substitution variable ${devlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.4.0+dfsg-3_armhf.deb'.
dpkg-deb: building package 'bamtools' in '../bamtools_2.4.0+dfsg-3_armhf.deb'.
dpkg-deb: building package 'libbamtools2.4.0' in '../libbamtools2.4.0_2.4.0+dfsg-3_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bamtools_2.4.0+dfsg-3_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bamtools-2.4.0+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151226-0437
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
bamtools_2.4.0+dfsg-3_armhf.changes:
────────────────────────────────────
Format: 1.8
Date: Sun, 20 Dec 2015 15:41:42 -0500
Source: bamtools
Binary: bamtools libbamtools-dev libbamtools2.4.0
Architecture: armhf
Version: 2.4.0+dfsg-3
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dominique Belhachemi <domibel@debian.org>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools2.4.0 - dynamic library for manipulating BAM (genome alignment) files
Closes: 807979
Changes:
bamtools (2.4.0+dfsg-3) unstable; urgency=medium
.
* allow to read bam files on big endian systems (Closes: #807979)
* added sam_spec_example.sam and sam_spec_example.bam files
* activated cmake testing framework abd added simple tests
Checksums-Sha1:
4b76ea6f048d72ed7a879f914b057691a9e36b7e 163272 bamtools_2.4.0+dfsg-3_armhf.deb
711075cdea2a54146377232bf27d5739efe34c9b 356104 libbamtools-dev_2.4.0+dfsg-3_armhf.deb
a18b530532238f87dd2ab53494feffa27875b72f 159046 libbamtools2.4.0_2.4.0+dfsg-3_armhf.deb
Checksums-Sha256:
ca48aa23c6934a72c98307167f8585846d36c170450c6db42b93723632882242 163272 bamtools_2.4.0+dfsg-3_armhf.deb
d3f6b154abc99d140bbcc3243509cbb8a693c1441731a97fe8b3a9d2e204721e 356104 libbamtools-dev_2.4.0+dfsg-3_armhf.deb
381748de8dcc2924a00c528c5610f31c402b490035a15e6fbd568cdcfb7ca5dd 159046 libbamtools2.4.0_2.4.0+dfsg-3_armhf.deb
Files:
661715306d4fed13d1694da5814fa148 163272 science optional bamtools_2.4.0+dfsg-3_armhf.deb
ec750de7f3633728c2c5674c5d3e34a3 356104 libdevel optional libbamtools-dev_2.4.0+dfsg-3_armhf.deb
3632047d25b39ad8b36d60df3c582c20 159046 libs optional libbamtools2.4.0_2.4.0+dfsg-3_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
bamtools_2.4.0+dfsg-3_armhf.deb
───────────────────────────────
new debian package, version 2.0.
size 163272 bytes: control archive=1312 bytes.
1803 bytes, 37 lines control
333 bytes, 5 lines md5sums
Package: bamtools
Version: 2.4.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 515
Depends: libbamtools2.4.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libjsoncpp0v5, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
drwxr-xr-x root/root 0 2015-12-26 04:36 ./
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/bin/
-rwxr-xr-x root/root 510408 2015-12-26 04:36 ./usr/bin/bamtools
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/doc/bamtools/
-rw-r--r-- root/root 829 2015-12-20 23:12 ./usr/share/doc/bamtools/changelog.Debian.gz
-rw-r--r-- root/root 1665 2015-12-20 21:15 ./usr/share/doc/bamtools/copyright
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/lintian/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 71 2015-12-20 20:37 ./usr/share/lintian/overrides/bamtools
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/man/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2015-12-26 04:36 ./usr/share/man/man1/bamtools.1.gz
libbamtools-dev_2.4.0+dfsg-3_armhf.deb
──────────────────────────────────────
new debian package, version 2.0.
size 356104 bytes: control archive=11124 bytes.
845 bytes, 21 lines control
37186 bytes, 404 lines md5sums
Package: libbamtools-dev
Source: bamtools
Version: 2.4.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4072
Depends: libbamtools2.4.0 (= 2.4.0+dfsg-3)
Section: libdevel
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
drwxr-xr-x root/root 0 2015-12-26 04:37 ./
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/include/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/include/bamtools/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/include/bamtools/api/
-rw-r--r-- root/root 847 2015-06-16 16:50 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root 23756 2015-06-16 16:50 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root 14867 2015-12-26 04:30 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root 9682 2015-06-16 16:50 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root 2885 2015-06-16 16:50 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root 4676 2015-06-16 16:50 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root 4285 2015-06-16 16:50 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root 2208 2015-06-16 16:50 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root 3022 2015-06-16 16:50 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root 3725 2015-06-16 16:50 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root 2959 2015-06-16 16:50 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root 2389 2015-06-16 16:50 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root 3127 2015-06-16 16:50 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root 3449 2015-06-16 16:50 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root 3281 2015-06-16 16:50 ./usr/include/bamtools/api/SamReadGroupDictionary.h
-rw-r--r-- root/root 2567 2015-06-16 16:50 ./usr/include/bamtools/api/SamSequence.h
-rw-r--r-- root/root 3248 2015-06-16 16:50 ./usr/include/bamtools/api/SamSequenceDictionary.h
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/include/bamtools/api/algorithms/
-rw-r--r-- root/root 12112 2015-06-16 16:50 ./usr/include/bamtools/api/algorithms/Sort.h
-rw-r--r-- root/root 757 2015-06-16 16:50 ./usr/include/bamtools/api/api_global.h
-rw-r--r-- root/root 852 2015-12-26 04:30 ./usr/include/bamtools/bamtools_version.h
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/include/bamtools/shared/
-rw-r--r-- root/root 2790 2015-06-16 16:50 ./usr/include/bamtools/shared/bamtools_global.h
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/lib/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 1010576 2015-12-26 04:36 ./usr/lib/arm-linux-gnueabihf/libbamtools.a
lrwxrwxrwx root/root 0 2015-12-26 04:36 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.4.0
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/
drwxr-xr-x root/root 0 2015-12-20 20:37 ./usr/share/cmake/
drwxr-xr-x root/root 0 2015-12-20 20:37 ./usr/share/cmake/bamtools/
-rw-r--r-- root/root 1574 2015-12-20 20:37 ./usr/share/cmake/bamtools/bamtools-config.cmake
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/doc-base/
-rw-r--r-- root/root 325 2015-12-20 20:37 ./usr/share/doc-base/libbamtools-dev
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libbamtools2.4.0_2.4.0+dfsg-3_armhf.deb
───────────────────────────────────────
new debian package, version 2.0.
size 159046 bytes: control archive=985 bytes.
886 bytes, 21 lines control
322 bytes, 4 lines md5sums
35 bytes, 1 lines shlibs
60 bytes, 2 lines triggers
Package: libbamtools2.4.0
Source: bamtools
Version: 2.4.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 513
Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
drwxr-xr-x root/root 0 2015-12-26 04:36 ./
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/lib/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 508048 2015-12-26 04:36 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/doc/libbamtools2.4.0/
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-rw-r--r-- root/root 1665 2015-12-20 21:15 ./usr/share/doc/libbamtools2.4.0/copyright
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/lintian/
drwxr-xr-x root/root 0 2015-12-26 04:36 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 100 2015-12-20 20:37 ./usr/share/lintian/overrides/libbamtools2.4.0
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 97844
Build-Time: 442
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 254
Job: bamtools_2.4.0+dfsg-3
Machine Architecture: armhf
Package: bamtools
Package-Time: 740
Source-Version: 2.4.0+dfsg-3
Space: 97844
Status: successful
Version: 2.4.0+dfsg-3
────────────────────────────────────────────────────────────────────────────────
Finished at 20151226-0437
Build needed 00:12:20, 97844k disc space