bamtools →
2.4.0+dfsg-3+b1 →
armhf → 2016-02-28 23:00:20
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testwandboard
+==============================================================================+
| bamtools 2.4.0+dfsg-3+b1 (armhf) 28 Feb 2016 22:47 |
+==============================================================================+
Package: bamtools
Version: 2.4.0+dfsg-3+b1
Source Version: 2.4.0+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/bamtools-ODainA/bamtools-2.4.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bamtools-ODainA' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e8ed87f5-38d4-4838-a018-6c93ee90eacd' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8766 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.9 MB]
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+------------------------------------------------------------------------------+
| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/bamtools.git
Please use:
git clone git://anonscm.debian.org/debian-med/bamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 169 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-3 (dsc) [2279 B]
Get:2 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-3 (tar) [157 kB]
Get:3 http://172.17.0.1/private stretch-staging/main bamtools 2.4.0+dfsg-3 (diff) [9616 B]
Fetched 169 kB in 0s (833 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-usHQEo/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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Get:3 file:/<<BUILDDIR>>/resolver-usHQEo/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-usHQEo/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-usHQEo/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-usHQEo/apt_archive ./ Packages [503 B]
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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
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Building dependency tree...
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
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Get:1 file:/<<BUILDDIR>>/resolver-usHQEo/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [762 B]
debconf: delaying package configuration, since apt-utils is not installed
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Merged Build-Depends: debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
Filtered Build-Depends: debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<<BUILDDIR>>/resolver-Fu85mH/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-Fu85mH/apt_archive ./ InRelease
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Get:2 file:/<<BUILDDIR>>/resolver-Fu85mH/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-Fu85mH/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-Fu85mH/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-Fu85mH/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-Fu85mH/apt_archive ./ Sources [240 B]
Get:5 file:/<<BUILDDIR>>/resolver-Fu85mH/apt_archive ./ Packages [556 B]
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+------------------------------------------------------------------------------+
| Install bamtools build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper
dh-strip-nondeterminism doxygen file gettext gettext-base groff-base
help2man intltool-debian libarchive-zip-perl libarchive13 libbsd0
libclang1-3.6 libcroco3 libcurl3 libedit2 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libgnutls30 libgssapi-krb5-2
libhogweed4 libicu55 libidn11 libjsoncpp-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libllvm3.6v5
liblocale-gettext-perl liblzo2-2 libmagic1 libnettle6 libnghttp2-14
libobjc-5-dev libobjc4 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libssh2-1 libssl1.0.2 libtasn1-6 libtimedate-perl
libunistring0 libxml2 man-db po-debconf zlib1g-dev
Suggested packages:
wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make
doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff lrzip gnutls-bin krb5-doc krb5-user
less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper
dh-strip-nondeterminism doxygen file gettext gettext-base groff-base
help2man intltool-debian libarchive-zip-perl libarchive13 libbsd0
libclang1-3.6 libcroco3 libcurl3 libedit2 libexpat1 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libgnutls30 libgssapi-krb5-2
libhogweed4 libicu55 libidn11 libjsoncpp-dev libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libllvm3.6v5
liblocale-gettext-perl liblzo2-2 libmagic1 libnettle6 libnghttp2-14
libobjc-5-dev libobjc4 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libssh2-1 libssl1.0.2 libtasn1-6 libtimedate-perl
libunistring0 libxml2 man-db po-debconf sbuild-build-depends-bamtools-dummy
zlib1g-dev
0 upgraded, 60 newly installed, 0 to remove and 34 not upgraded.
Need to get 37.9 MB/37.9 MB of archives.
After this operation, 141 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-Fu85mH/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [812 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf liblocale-gettext-perl armhf 1.07-1+b1 [18.0 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.2-1 [88.0 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libedit2 armhf 3.1-20150325-1 [70.7 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf cmake-data all 3.4.1-2 [1110 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libarchive13 armhf 3.1.2-11+b1 [230 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-8 [11.5 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.13.2+dfsg-5 [56.6 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.13.2+dfsg-5 [110 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.13.2+dfsg-5 [259 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.13.2+dfsg-5 [130 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libidn11 armhf 1.32-3 [110 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-3 [93.3 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.7-3 [44.4 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.4.9-2 [711 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-14+b1 [65.8 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-14+b1 [97.1 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.7.1-2 [63.2 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d-1+b1 [54.4 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.5.0-2 [122 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2f-2 [883 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.47.0-1 [247 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp1 armhf 1.6.5-4 [63.4 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf cmake armhf 3.4.1-2+b1 [2183 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf d-shlibs all 0.63+rpi1 [16.4 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.015-1 [11.0 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.015-1 [6810 B]
Get:52 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libllvm3.6v5 armhf 1:3.6.2-3 [6970 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libobjc4 armhf 5.3.1-8+rpi1 [90.3 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libobjc-5-dev armhf 5.3.1-8+rpi1 [335 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libclang1-3.6 armhf 1:3.6.2-3 [2945 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf doxygen armhf 1.8.11-1 [3231 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf help2man armhf 1.47.3 [154 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libjsoncpp-dev armhf 1.6.5-4 [73.6 kB]
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Setting up dh-strip-nondeterminism (0.015-1) ...
Processing triggers for libc-bin (2.21-7) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.3.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-3 dpkg-dev_1.18.4 g++-5_5.3.1-8+rpi1 gcc-5_5.3.1-8+rpi1 libc6-dev_2.21-7 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.2.3 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-3 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 cmake_3.4.1-2+b1 cmake-data_3.4.1-2 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-8+rpi1 d-shlibs_0.63+rpi1 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-2 doxygen_1.8.11-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-8+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-8+rpi1 gcc-5-base_5.3.1-8+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 help2man_1.47.3 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5.2 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-7+rpi1 kmod_22-1 libacl1_2.2.52-3 libapparmor1_2.10-3 libapt-pkg5.0_1.2.3 libarchive-zip-perl_1.56-2 libarchive13_3.1.2-11+b1 libasan2_5.3.1-8+rpi1 libatomic1_5.3.1-8+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1 libaudit1_1:2.4.5-1 libblkid1_2.27.1-3 libbsd0_0.8.2-1 libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-8+rpi1 libclang1-3.6_1:3.6.2-3 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libcurl3_7.47.0-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.204 libdevmapper1.02.1_2:1.02.115-2 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libedit2_3.1-20150325-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgc1c2_1:7.4.2-7.3 libgcc-5-dev_5.3.1-8+rpi1 libgcc1_1:5.3.1-8+rpi1 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.9-2 libgomp1_5.3.1-8+rpi1 libgpg-error0_1.21-1 libgssapi-krb5-2_1.13.2+dfsg-5 libhogweed4_3.2-1 libicu55_55.1-7 libidn11_1.32-3 libisl15_0.16.1-1 libjsoncpp-dev_1.6.5-4 libjsoncpp1_1.6.5-4 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8 libklibc_2.0.4-7+rpi1 libkmod2_22-1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 libllvm3.6v5_1:3.6.2-3 liblocale-gettext-perl_1.07-1+b1 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 liblzo2-2_2.08-1.2 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libnettle6_3.2-1 libnghttp2-14_1.7.1-2 libobjc-5-dev_5.3.1-8+rpi1 libobjc4_5.3.1-8+rpi1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-1 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d-1+b1 libsasl2-2_2.1.26.dfsg1-14+b1 libsasl2-modules-db_2.1.26.dfsg1-14+b1 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsmartcols1_2.27.1-3 libss2_1.42.13-1 libssh2-1_1.5.0-2 libssl1.0.2_1.0.2f-2 libstdc++-5-dev_5.3.1-8+rpi1 libstdc++6_5.3.1-8+rpi1 libsystemd0_228-6 libtasn1-6_4.7-3 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libubsan0_5.3.1-8+rpi1 libudev1_228-6 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-1 mawk_1.3.3-17 mount_2.27.1-3 multiarch-support_2.21-7 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-7 plymouth_0.9.2-3 po-debconf_1.0.19 procps_2:3.3.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-6 systemd-sysv_228-6 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-6 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Dec 20 23:52:05 2015 UTC using RSA key ID 62191001
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bamtools_2.4.0+dfsg-3.dsc
dpkg-source: info: extracting bamtools in bamtools-2.4.0+dfsg
dpkg-source: info: unpacking bamtools_2.4.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking bamtools_2.4.0+dfsg-3.debian.tar.xz
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying 0002-support-out-of-source-build.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch
dpkg-source: info: applying 0006-Doxygen-reproducibility
dpkg-source: info: applying 0006-Fix-Doxyfile-input-source-path.patch
dpkg-source: info: applying 0007-Big_Endian.patch
dpkg-source: info: applying 0008_Cmake_Test.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.4.0+dfsg-3+b1
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e8ed87f5-38d4-4838-a018-6c93ee90eacd
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package bamtools
dpkg-buildpackage: source version 2.4.0+dfsg-3+b1
dpkg-buildpackage: source distribution stretch-staging
dpkg-source --before-build bamtools-2.4.0+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
dh_auto_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_auto_configure -a -O--parallel
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-- The C compiler identification is GNU 5.3.1
-- The CXX compiler identification is GNU 5.3.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg'
dh_auto_build
make -j4
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/<<BUILDDIR>>/bamtools-2.4.0+dfsg -B/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
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make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[4]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools
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make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
Scanning dependencies of target BamTools-static
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make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
[ 2%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp
[ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamReader.cpp
[ 4%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp
[ 5%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp
[ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp
[ 7%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamReader.cpp
[ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp
[ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp
[ 10%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp
[ 11%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp
[ 12%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp
[ 13%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp
[ 14%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp
[ 15%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamReadGroup.cpp
[ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp
[ 17%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamReadGroup.cpp
[ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp
[ 19%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp
[ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamSequenceDictionary.cpp
[ 21%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp
[ 22%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/SamSequenceDictionary.cpp
[ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 24%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 25%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 26%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
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[ 28%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o
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[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
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[ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
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[ 31%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o
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[ 32%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o
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[ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
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[ 34%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
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[ 35%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o
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[ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
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[ 37%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o
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[ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
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[ 39%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
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[ 40%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o
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[ 41%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o
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[ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
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[ 43%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o
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[ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
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[ 46%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
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[ 47%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o
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[ 48%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o
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[ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
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[ 51%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
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[ 52%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o
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[ 53%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o
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[ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 56%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 57%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 58%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 59%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
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[ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
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[ 63%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 65%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 66%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 67%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 68%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 69%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 70%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 71%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 72%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 73%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 74%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 75%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/utils/BamException_p.cpp
[ 76%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 77%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/internal/utils/BamException_p.cpp
[ 78%] Linking CXX shared library ../../lib/libbamtools.so
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.4.0 -o ../../lib/libbamtools.so.2.4.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so
make[4]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 78%] Built target BamTools
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[ 79%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils/bamtools_fasta.cpp
[ 80%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils/bamtools_options.cpp
[ 81%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils/bamtools_pileup_engine.cpp
[ 82%] Linking CXX static library ../../lib/libbamtools.a
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cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-static.dir/link.txt --verbose=1
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[ 83%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils/bamtools_utilities.cpp
[ 84%] Linking CXX static library ../../lib/libbamtools-utils.a
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cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
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make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
Scanning dependencies of target bamtools_cmd
make[4]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
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make[4]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 85%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_count.cpp
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_coverage.cpp
[ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
[ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_convert.cpp
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp
/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp: In member function 'bool BamTools::FilterTool::FilterToolPrivate::ParseScript()':
/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp:650:50: warning: 'std::__cxx11::string Json::Reader::getFormatedErrorMessages() const' is deprecated: Use getFormattedErrorMessages() instead. [-Wdeprecated-declarations]
<< reader.getFormatedErrorMessages();
^
In file included from /usr/include/jsoncpp/json/json.h:11:0,
from /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp:19:
/usr/include/jsoncpp/json/reader.h:114:15: note: declared here
std::string getFormatedErrorMessages() const;
^
[ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_header.cpp
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_index.cpp
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_merge.cpp
[ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_random.cpp
[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_resolve.cpp
[ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_revert.cpp
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_sort.cpp
[ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api -I/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit/bamtools_split.cpp
[ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
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/<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:174: warning: found \endinternal without matching \internal
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make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools-static.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 72%] Built target BamTools-static
[ 79%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/utils /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/bamtools-2.4.0+dfsg /<<BUILDDIR>>/bamtools-2.4.0+dfsg/src/toolkit /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'.
make[3]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.a
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools-2.4.0
-- Installing: /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools
-- Removed runtime path from "/<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools-2.4.0"
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg'
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/lib*.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /<<BUILDDIR>>/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.4.0
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
dh_install
# no need to install different versions of bamtools
rm -rf debian/bamtools/usr/bin/bamtools
mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools
rm -f debian/libbamtools-dev/usr/share/doc/libbamtools-dev/html/jquery.js
ln -s /usr/share/javascript/jquery/jquery.js debian/libbamtools-dev/usr/share/doc/libbamtools-dev/html/jquery.js
make[1]: Leaving directory '/<<BUILDDIR>>/bamtools-2.4.0+dfsg'
dh_installdocs -a -O--parallel
dh_installchangelogs -a -O--parallel
dh_installman -a -O--parallel
dh_lintian -a -O--parallel
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0 found in none of the libraries
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libbamtools-dev: unused substitution variable ${devlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.4.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'bamtools-dbgsym' in '../bamtools-dbgsym_2.4.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libbamtools2.4.0-dbgsym' in '../libbamtools2.4.0-dbgsym_2.4.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'libbamtools2.4.0' in '../libbamtools2.4.0_2.4.0+dfsg-3+b1_armhf.deb'.
dpkg-deb: building package 'bamtools' in '../bamtools_2.4.0+dfsg-3+b1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bamtools_2.4.0+dfsg-3+b1_armhf.changes
dpkg-genchanges: warning: package bamtools-dbgsym listed in files list but not in control info
dpkg-genchanges: warning: package libbamtools2.4.0-dbgsym listed in files list but not in control info
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bamtools-2.4.0+dfsg
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160228-2300
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
bamtools_2.4.0+dfsg-3+b1_armhf.changes:
---------------------------------------
Format: 1.8
Date: Sun, 20 Dec 2015 15:41:42 -0500
Source: bamtools (2.4.0+dfsg-3)
Binary: bamtools libbamtools-dev libbamtools2.4.0
Binary-Only: yes
Architecture: armhf
Version: 2.4.0+dfsg-3+b1
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools2.4.0 - dynamic library for manipulating BAM (genome alignment) files
Changes:
bamtools (2.4.0+dfsg-3+b1) stretch-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
08fc44b9014f7f7a5e9a34ea0a7dce54618c42b9 2500818 bamtools-dbgsym_2.4.0+dfsg-3+b1_armhf.deb
268f77212e2c4e8ca907994a1b62e1c808afca1d 163376 bamtools_2.4.0+dfsg-3+b1_armhf.deb
523e5ce9eabb93249e13a2e120bfe07d90baddce 355296 libbamtools-dev_2.4.0+dfsg-3+b1_armhf.deb
66ac36e7aacec61b6a2561efdeec63fa0e4099d4 2114738 libbamtools2.4.0-dbgsym_2.4.0+dfsg-3+b1_armhf.deb
188fa598933206e09212efa65c11fffed7b429b9 159376 libbamtools2.4.0_2.4.0+dfsg-3+b1_armhf.deb
Checksums-Sha256:
704fe4079f6e69bb4264601acf1905593fe9261a23a6b09d697b56d603ab1eaf 2500818 bamtools-dbgsym_2.4.0+dfsg-3+b1_armhf.deb
82fd3f73cdef8b862684ebf18fa268a42ff3e192741a5ee99255d0b7828f00be 163376 bamtools_2.4.0+dfsg-3+b1_armhf.deb
a2a471f639b29d8f5a49c76338cc4781779b2bc877ca6c3019cc127fec745fe2 355296 libbamtools-dev_2.4.0+dfsg-3+b1_armhf.deb
0ed54101aec7fa2dffdcc3c1270e1f493f57deb9ae336845c3b4abd3ac8b6411 2114738 libbamtools2.4.0-dbgsym_2.4.0+dfsg-3+b1_armhf.deb
2d4926d81f6d6b99af997694125b74f2b96020a430d01be10cfa3167c5fd5f7f 159376 libbamtools2.4.0_2.4.0+dfsg-3+b1_armhf.deb
Files:
3d5f00d21db597a550a36b2e05e07621 2500818 debug extra bamtools-dbgsym_2.4.0+dfsg-3+b1_armhf.deb
d071b1a9b6c2f85fd6f742dd63715b28 163376 science optional bamtools_2.4.0+dfsg-3+b1_armhf.deb
f8485d1a1ab11a47598b4a2e1c8e80d0 355296 libdevel optional libbamtools-dev_2.4.0+dfsg-3+b1_armhf.deb
bdaedb7db3928085820f8ff129020ca7 2114738 debug extra libbamtools2.4.0-dbgsym_2.4.0+dfsg-3+b1_armhf.deb
61b0ce967abeabeffdb1c64ad33811c7 159376 libs optional libbamtools2.4.0_2.4.0+dfsg-3+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
bamtools-dbgsym_2.4.0+dfsg-3+b1_armhf.deb
-----------------------------------------
new debian package, version 2.0.
size 2500818 bytes: control archive=506 bytes.
458 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: bamtools-dbgsym
Source: bamtools (2.4.0+dfsg-3)
Version: 2.4.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2558
Depends: bamtools (= 2.4.0+dfsg-3+b1)
Section: debug
Priority: extra
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: Debug symbols for bamtools
Auto-Built-Package: debug-symbols
Build-Ids: 3b9e533e6bf22089e139a23d4d0ae0344c56e3ba
drwxr-xr-x root/root 0 2016-02-28 22:59 ./
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/debug/.build-id/3b/
-rw-r--r-- root/root 2608428 2016-02-28 22:59 ./usr/lib/debug/.build-id/3b/9e533e6bf22089e139a23d4d0ae0344c56e3ba.debug
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-02-28 22:59 ./usr/share/doc/bamtools-dbgsym -> bamtools
bamtools_2.4.0+dfsg-3+b1_armhf.deb
----------------------------------
new debian package, version 2.0.
size 163376 bytes: control archive=1352 bytes.
1836 bytes, 38 lines control
416 bytes, 6 lines md5sums
Package: bamtools
Source: bamtools (2.4.0+dfsg-3)
Version: 2.4.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 516
Depends: libbamtools2.4.0, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libjsoncpp1, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
drwxr-xr-x root/root 0 2016-02-28 22:59 ./
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/bin/
-rwxr-xr-x root/root 510516 2016-02-28 22:59 ./usr/bin/bamtools
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/doc/bamtools/
-rw-r--r-- root/root 224 2016-02-28 22:51 ./usr/share/doc/bamtools/changelog.Debian.armhf.gz
-rw-r--r-- root/root 829 2016-02-28 22:51 ./usr/share/doc/bamtools/changelog.Debian.gz
-rw-r--r-- root/root 1665 2015-12-20 21:15 ./usr/share/doc/bamtools/copyright
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/lintian/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 71 2015-12-20 20:37 ./usr/share/lintian/overrides/bamtools
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/man/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2016-02-28 22:59 ./usr/share/man/man1/bamtools.1.gz
libbamtools-dev_2.4.0+dfsg-3+b1_armhf.deb
-----------------------------------------
new debian package, version 2.0.
size 355296 bytes: control archive=11156 bytes.
866 bytes, 21 lines control
37282 bytes, 405 lines md5sums
Package: libbamtools-dev
Source: bamtools (2.4.0+dfsg-3)
Version: 2.4.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4066
Depends: libbamtools2.4.0 (= 2.4.0+dfsg-3+b1)
Section: libdevel
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
drwxr-xr-x root/root 0 2016-02-28 22:59 ./
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/include/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/include/bamtools/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/include/bamtools/api/
-rw-r--r-- root/root 847 2015-06-16 16:50 ./usr/include/bamtools/api/BamAlgorithms.h
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libbamtools2.4.0-dbgsym_2.4.0+dfsg-3+b1_armhf.deb
-------------------------------------------------
new debian package, version 2.0.
size 2114738 bytes: control archive=517 bytes.
482 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libbamtools2.4.0-dbgsym
Source: bamtools (2.4.0+dfsg-3)
Version: 2.4.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2180
Depends: libbamtools2.4.0 (= 2.4.0+dfsg-3+b1)
Section: debug
Priority: extra
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: Debug symbols for libbamtools2.4.0
Auto-Built-Package: debug-symbols
Build-Ids: 9e8933cb6d857eb7a2bfc40ec88477532393762f
drwxr-xr-x root/root 0 2016-02-28 22:59 ./
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/debug/.build-id/9e/
-rw-r--r-- root/root 2222048 2016-02-28 22:59 ./usr/lib/debug/.build-id/9e/8933cb6d857eb7a2bfc40ec88477532393762f.debug
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-02-28 22:59 ./usr/share/doc/libbamtools2.4.0-dbgsym -> libbamtools2.4.0
libbamtools2.4.0_2.4.0+dfsg-3+b1_armhf.deb
------------------------------------------
new debian package, version 2.0.
size 159376 bytes: control archive=1024 bytes.
904 bytes, 21 lines control
413 bytes, 5 lines md5sums
35 bytes, 1 lines shlibs
60 bytes, 2 lines triggers
Package: libbamtools2.4.0
Source: bamtools (2.4.0+dfsg-3)
Version: 2.4.0+dfsg-3+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 514
Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
drwxr-xr-x root/root 0 2016-02-28 22:59 ./
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 508156 2016-02-28 22:59 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/doc/libbamtools2.4.0/
-rw-r--r-- root/root 224 2016-02-28 22:51 ./usr/share/doc/libbamtools2.4.0/changelog.Debian.armhf.gz
-rw-r--r-- root/root 829 2016-02-28 22:51 ./usr/share/doc/libbamtools2.4.0/changelog.Debian.gz
-rw-r--r-- root/root 1665 2015-12-20 21:15 ./usr/share/doc/libbamtools2.4.0/copyright
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/lintian/
drwxr-xr-x root/root 0 2016-02-28 22:59 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 100 2015-12-20 20:37 ./usr/share/lintian/overrides/libbamtools2.4.0
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 107132
Build-Time: 517
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 231
Job: bamtools_2.4.0+dfsg-3
Machine Architecture: armhf
Package: bamtools
Package-Time: 792
Source-Version: 2.4.0+dfsg-3
Space: 107132
Status: successful
Version: 2.4.0+dfsg-3+b1
--------------------------------------------------------------------------------
Finished at 20160228-2300
Build needed 00:13:12, 107132k disc space