bamtools →
2.4.0+dfsg-2 →
armhf → 2015-10-01 04:40:54
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-02
╔══════════════════════════════════════════════════════════════════════════════╗
║ bamtools 2.4.0+dfsg-2 (armhf) 01 Oct 2015 04:24 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bamtools
Version: 2.4.0+dfsg-2
Source Version: 2.4.0+dfsg-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/bamtools-SdXQAA/bamtools-2.4.0+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/bamtools-SdXQAA' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-698ef1b9-1e4c-4081-9dc6-ba6695c3ee31' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8340 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.2 MB]
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
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NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/bamtools.git
Need to get 167 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main bamtools 2.4.0+dfsg-2 (dsc) [2238 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main bamtools 2.4.0+dfsg-2 (tar) [157 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main bamtools 2.4.0+dfsg-2 (diff) [8252 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-E6Qkot/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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0 upgraded, 1 newly installed, 0 to remove and 41 not upgraded.
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen
dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/«BUILDDIR»/resolver-hYYTtO/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install bamtools build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cmake cmake-data cpp-5 d-shlibs debhelper doxygen file g++-5
gcc-5 gcc-5-base gettext gettext-base groff-base help2man intltool-debian
libarchive13 libasan2 libatomic1 libbsd0 libcc1-0 libclang1-3.5 libcroco3
libcurl3 libedit2 libexpat1 libffi6 libgcc-5-dev libgcc1 libglib2.0-0
libgnutls-deb0-28 libgomp1 libgssapi-krb5-2 libhogweed4 libicu55 libidn11
libjsoncpp-dev libjsoncpp0v5 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libllvm3.5v5 liblzo2-2 libmagic1 libnettle6
libobjc-5-dev libobjc4 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libssh2-1 libssl1.0.0 libstdc++-5-dev libstdc++6
libtasn1-6 libubsan0 libunistring0 libxapian22v5 libxml2 man-db po-debconf
zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation codeblocks eclipse ninja-build
gcc-5-locales dh-make doxygen-latex doxygen-doc doxygen-gui graphviz
gcc-5-doc libstdc++6-5-dbg libgcc1-dbg libgomp1-dbg libitm1-dbg
libatomic1-dbg libasan2-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg
libcilkrts5-dbg libmpx0-dbg libquadmath-dbg gettext-doc autopoint
libasprintf-dev libgettextpo-dev groff lrzip gnutls-bin krb5-doc krb5-user
libstdc++-5-doc xapian-tools less www-browser libmail-box-perl
Recommended packages:
curl wget lynx-cur ca-certificates libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cmake cmake-data d-shlibs debhelper doxygen file gettext
gettext-base groff-base help2man intltool-debian libarchive13 libbsd0
libclang1-3.5 libcroco3 libcurl3 libedit2 libexpat1 libffi6 libglib2.0-0
libgnutls-deb0-28 libgssapi-krb5-2 libhogweed4 libicu55 libidn11
libjsoncpp-dev libjsoncpp0v5 libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 libldap-2.4-2 libllvm3.5v5 liblzo2-2 libmagic1 libnettle6
libobjc-5-dev libobjc4 libp11-kit0 libpipeline1 librtmp1 libsasl2-2
libsasl2-modules-db libssh2-1 libssl1.0.0 libtasn1-6 libunistring0
libxapian22v5 libxml2 man-db po-debconf sbuild-build-depends-bamtools-dummy
zlib1g-dev
The following packages will be upgraded:
cpp-5 g++-5 gcc-5 gcc-5-base libasan2 libatomic1 libcc1-0 libgcc-5-dev
libgcc1 libgomp1 libstdc++-5-dev libstdc++6 libubsan0
13 upgraded, 54 newly installed, 0 to remove and 28 not upgraded.
Need to get 118 MB/118 MB of archives.
After this operation, 146 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libgomp1 armhf 5.2.1-17+rpi1 [47.6 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libatomic1 armhf 5.2.1-17+rpi1 [6712 B]
Get:3 http://172.17.0.1/private/ stretch-staging/main libasan2 armhf 5.2.1-17+rpi1 [227 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main libubsan0 armhf 5.2.1-17+rpi1 [84.3 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main cpp-5 armhf 5.2.1-17+rpi1 [23.1 MB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libcc1-0 armhf 5.2.1-17+rpi1 [24.8 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main g++-5 armhf 5.2.1-17+rpi1 [32.2 MB]
Get:8 http://172.17.0.1/private/ stretch-staging/main gcc-5 armhf 5.2.1-17+rpi1 [23.1 MB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libgcc-5-dev armhf 5.2.1-17+rpi1 [448 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main gcc-5-base armhf 5.2.1-17+rpi1 [166 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libstdc++6 armhf 5.2.1-17+rpi1 [325 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libstdc++-5-dev armhf 5.2.1-17+rpi1 [1376 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libgcc1 armhf 1:5.2.1-17+rpi1 [38.5 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.3-1 [975 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libbsd0 armhf 0.7.0-2 [63.7 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libedit2 armhf 3.1-20150325-1 [70.7 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.5-2 [43.9 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main cmake-data all 3.3.2-1 [1082 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libnettle6 armhf 3.1.1-4 [200 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libicu55 armhf 55.1-5 [7378 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.2+zdfsg1-4 [797 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libarchive13 armhf 3.1.2-11+b1 [230 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-7 [11.5 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.13.2+dfsg-2 [55.9 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.13.2+dfsg-2 [109 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.13.2+dfsg-2 [260 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.13.2+dfsg-2 [130 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libidn11 armhf 1.32-1 [168 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libhogweed4 armhf 3.1.1-4 [126 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.23.1-3 [94.2 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.17-1 [646 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-14 [65.5 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-14 [96.8 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1 [197 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main librtmp1 armhf 2.4+20150115.gita107cef-1+b1 [54.5 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main libssh2-1 armhf 1.5.0-2 [122 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main libcurl3 armhf 7.44.0-2 [238 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libjsoncpp0v5 armhf 0.10.5-1 [66.2 kB]
Get:46 http://172.17.0.1/private/ stretch-staging/main cmake armhf 3.3.2-1 [2128 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.1-1.1 [2312 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libobjc4 armhf 5.2.1-17+rpi1 [90.4 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:51 http://172.17.0.1/private/ stretch-staging/main libxapian22v5 armhf 1.2.21-1.2 [857 kB]
Get:52 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.25-2 [250 kB]
Get:53 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.25-2 [61.2 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main d-shlibs all 0.62 [16.9 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150811 [817 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main libllvm3.5v5 armhf 1:3.5.2-2 [6502 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main libobjc-5-dev armhf 5.2.1-17+rpi1 [336 kB]
Get:62 http://172.17.0.1/private/ stretch-staging/main libclang1-3.5 armhf 1:3.5.2-2 [2820 kB]
Get:63 http://172.17.0.1/private/ stretch-staging/main doxygen armhf 1.8.9.1-5 [2582 kB]
Get:64 http://172.17.0.1/private/ stretch-staging/main help2man armhf 1.47.2 [154 kB]
Get:65 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:66 http://172.17.0.1/private/ stretch-staging/main libjsoncpp-dev armhf 0.10.5-1 [490 kB]
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Setting up cpp-5 (5.2.1-17+rpi1) ...
Setting up libcc1-0:armhf (5.2.1-17+rpi1) ...
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Setting up gcc-5 (5.2.1-17+rpi1) ...
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1) ...
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Processing triggers for libc-bin (2.19-19) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-1 dpkg-dev_1.18.2 g++-4.9_4.9.3-4 g++-5_5.2.1-17+rpi1 gcc-4.9_4.9.3-4 gcc-5_5.2.1-17+rpi1 libc6-dev_2.19-19 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-17+rpi1 libstdc++6_5.2.1-17+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.10.2 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-1 bsdmainutils_9.0.6 bsdutils_1:2.26.2-9 build-essential_11.7 bzip2_1.0.6-8 cmake_3.3.2-1 cmake-data_3.3.2-1 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-4.9_4.9.3-4 cpp-5_5.2.1-17+rpi1 d-shlibs_0.62 dash_0.5.7-4 debconf_1.5.57 debfoster_2.7-2 debhelper_9.20150811 debianutils_4.5.1 diffutils_1:3.3-1 dmsetup_2:1.02.104-1 doxygen_1.8.9.1-5 dpkg_1.18.2 dpkg-dev_1.18.2 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-9 g++_4:5.2.1-4+rpi2 g++-4.9_4.9.3-4 g++-5_5.2.1-17+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-4 gcc-4.9_4.9.3-4 gcc-4.9-base_4.9.3-4 gcc-5_5.2.1-17+rpi1 gcc-5-base_5.2.1-17+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-5 gpgv_1.4.19-5 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4 help2man_1.47.2 hostname_3.16 init_1.23 init-system-helpers_1.23 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.9.2-3 libapt-pkg4.12_1.0.9.10 libapt-pkg4.16_1.0.10.2 libarchive13_3.1.2-11+b1 libasan1_4.9.3-4 libasan2_5.2.1-17+rpi1 libatomic1_5.2.1-17+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-1 libaudit1_1:2.4.4-1 libblkid1_2.26.2-9 libbsd0_0.7.0-2 libbz2-1.0_1.0.6-8 libc-bin_2.19-19 libc-dev-bin_2.19-19 libc6_2.19-19 libc6-dev_2.19-19 libcap2_1:2.24-11 libcap2-bin_1:2.24-11 libcc1-0_5.2.1-17+rpi1 libclang1-3.5_1:3.5.2-2 libcloog-isl4_0.18.3-1 libcomerr2_1.42.13-1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcurl3_7.44.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.8.20-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.104-1 libdpkg-perl_1.18.2 libdrm2_2.4.64-1 libedit2_3.1-20150325-1 libexpat1_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.26.2-9 libffi6_3.2.1-3 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-4 libgcc-5-dev_5.2.1-17+rpi1 libgcc1_1:5.2.1-17+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgnutls-deb0-28_3.3.17-1 libgomp1_5.2.1-17+rpi1 libgpg-error0_1.19-2 libgssapi-krb5-2_1.13.2+dfsg-2 libhogweed4_3.1.1-4 libicu55_55.1-5 libidn11_1.32-1 libisl13_0.14-2 libjsoncpp-dev_0.10.5-1 libjsoncpp0v5_0.10.5-1 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-7 libklibc_2.0.4-2+rpi1 libkmod2_21-1 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 libldap-2.4-2_2.4.42+dfsg-2+rpi1 libllvm3.5v5_1:3.5.2-2 liblocale-gettext-perl_1.05-9 liblzma5_5.1.1alpha+20120614-2.1 liblzo2-2_2.08-1.2 libmagic1_1:5.25-2 libmount1_2.26.2-9 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20150810-1 libncursesw5_6.0+20150810-1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libobjc-5-dev_5.2.1-17+rpi1 libobjc4_5.2.1-17+rpi1 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7.1 libpipeline1_1.4.1-1 libpng12-0_1.2.50-2+b2 libprocps3_2:3.3.9-9 libprocps4_2:3.3.10-2 libreadline6_6.3-8+b3 librtmp1_2.4+20150115.gita107cef-1+b1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2+b1 libsmartcols1_2.26.2-9 libss2_1.42.13-1 libssh2-1_1.5.0-2 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-4 libstdc++-5-dev_5.2.1-17+rpi1 libstdc++6_5.2.1-17+rpi1 libsystemd0_225-1 libtasn1-6_4.5-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20150810-1 libubsan0_5.2.1-17+rpi1 libudev1_225-1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-9 libxapian22v5_1.2.21-1.2 libxml2_2.9.2+zdfsg1-4 linux-libc-dev_3.16.7-ckt4-1+rpi1+b2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.3-1 mawk_1.3.3-17 mount_2.26.2-9 mountall_2.54 multiarch-support_2.19-19 ncurses-base_6.0+20150810-1 ncurses-bin_6.0+20150810-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.10-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_225-1 systemd-sysv_225-1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-1 tzdata_2015f-1 udev_225-1 util-linux_2.26.2-9 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
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gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Sep 25 13:25:52 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bamtools_2.4.0+dfsg-2.dsc
dpkg-source: info: extracting bamtools in bamtools-2.4.0+dfsg
dpkg-source: info: unpacking bamtools_2.4.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking bamtools_2.4.0+dfsg-2.debian.tar.xz
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying 0002-support-out-of-source-build.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch
dpkg-source: info: applying 0006-Doxygen-reproducibility
dpkg-source: info: applying 0006-Fix-Doxyfile-input-source-path.patch
Check disc space
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Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-698ef1b9-1e4c-4081-9dc6-ba6695c3ee31
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package bamtools
dpkg-buildpackage: source version 2.4.0+dfsg-2
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build bamtools-2.4.0+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
dh_auto_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_auto_configure -a -O--parallel
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None
-- The C compiler identification is GNU 5.2.1
-- The CXX compiler identification is GNU 5.2.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
-- Build files have been written to: /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf
debian/rules override_dh_auto_build
make[1]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg'
dh_auto_build
make -j4
make[2]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/«BUILDDIR»/bamtools-2.4.0+dfsg -B/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-static
Scanning dependencies of target BamTools
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
[ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
[ 3%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp
[ 4%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp
[ 5%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.cpp
[ 6%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp
[ 7%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp
[ 8%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp
[ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.cpp
[ 10%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp
[ 11%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroup.cpp
[ 12%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp
[ 13%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp
[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.cpp
[ 15%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp
[ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp
[ 17%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp
[ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroup.cpp
[ 19%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequenceDictionary.cpp
[ 20%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp
[ 22%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp
[ 24%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequenceDictionary.cpp
[ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
[ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
[ 28%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
[ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 31%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 32%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 33%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 34%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 35%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
[ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
[ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
[ 38%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 39%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamFile_p.cpp
[ 40%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 41%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 42%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 43%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 44%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
[ 46%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
[ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamFile_p.cpp
[ 48%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 50%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 51%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamFtp_p.cpp
[ 52%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 53%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamHttp_p.cpp
[ 55%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 56%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BamPipe_p.cpp
[ 58%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 59%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 60%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 62%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 63%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/ByteArray_p.cpp
[ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HostAddress_p.cpp
[ 65%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HostInfo_p.cpp
[ 66%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 67%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
[ 68%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 69%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
[ 70%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/utils/BamException_p.cpp
[ 71%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
[ 72%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
[ 73%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
[ 74%] Linking CXX static library ../../lib/libbamtools.a
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -P CMakeFiles/BamTools-static.dir/cmake_clean_target.cmake
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-static.dir/link.txt --verbose=1
/usr/bin/ar cq ../../lib/libbamtools.a CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o CMakeFiles/BamTools-static.dir/BamReader.cpp.o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
/usr/bin/ranlib ../../lib/libbamtools.a
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 74%] Built target BamTools-static
[ 75%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
[ 76%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
[ 77%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
[ 78%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/utils/BamException_p.cpp
[ 79%] Linking CXX shared library ../../lib/libbamtools.so
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.4.0 -o ../../lib/libbamtools.so.2.4.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so.2.4.0 ../../lib/libbamtools.so
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-utils
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 81%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
[ 81%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils/bamtools_options.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils/bamtools_fasta.cpp
[ 82%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils/bamtools_pileup_engine.cpp
[ 83%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils/bamtools_utilities.cpp
[ 84%] Linking CXX static library ../../lib/libbamtools-utils.a
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar cq ../../lib/libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
/usr/bin/ranlib ../../lib/libbamtools-utils.a
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
Scanning dependencies of target bamtools_cmd
make[4]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[4]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
[ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
[ 87%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_count.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_coverage.cpp
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp
[ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_convert.cpp
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp: In member function 'bool BamTools::FilterTool::FilterToolPrivate::ParseScript()':
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp:650:50: warning: 'std::__cxx11::string Json::Reader::getFormatedErrorMessages() const' is deprecated: Use getFormattedErrorMessages() instead. [-Wdeprecated-declarations]
<< reader.getFormatedErrorMessages();
^
In file included from /usr/include/jsoncpp/json/json.h:11:0,
from /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_filter.cpp:19:
/usr/include/jsoncpp/json/reader.h:102:15: note: declared here
std::string getFormatedErrorMessages() const;
^
[ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_header.cpp
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_index.cpp
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_merge.cpp
[ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_random.cpp
[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_resolve.cpp
[ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_revert.cpp
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
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cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src -I/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit/bamtools_split.cpp
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cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_symlink_executable ../../bin/bamtools-2.4.0 ../../bin/bamtools
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/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:174: warning: found \endinternal without matching \internal
Searching for include files...
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Searching for files in directory /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/bam
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Searching for files in directory /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/internal/utils
Reading and parsing tag files
Parsing files
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/algorithms/Sort.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/algorithms/Sort.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlgorithms.h...
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Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamIndex.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamIndex.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamReader.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.cpp...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamWriter.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/IBamIODevice.h...
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/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp:26: warning: Documentation for undefined enum `MergeOrder' found.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:180: warning: documented symbol `bool BamTools::AddTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:290: warning: documented symbol `template< typename T > bool BamTools::AddTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:356: warning: documented symbol `template< typename T > bool BamTools::EditTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:383: warning: documented symbol `template< typename T > bool BamTools::EditTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:408: warning: documented symbol `template< typename T > bool BamTools::GetTag' was not declared or defined.
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamAlignment.h:532: warning: documented symbol `template< typename T > bool BamTools::GetTag' was not declared or defined.
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamConstants.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamHeader.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgram.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.cpp...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.h...
Parsing file /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamProgramChain.h...
Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroup.cpp...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroup.h...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamReadGroupDictionary.cpp...
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Preprocessing /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/SamSequence.cpp...
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Building group list...
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Combining using relations...
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp:362: warning: Found unknown command `\bold'
/«BUILDDIR»/bamtools-2.4.0+dfsg/src/api/BamMultiReader.cpp:365: warning: Found unknown command `\bold'
Adding members to index pages...
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Generating graph info page...
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finalizing index lists...
writing tag file...
lookup cache used 1183/65536 hits=5405 misses=1214
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make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools-static.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 79%] Built target BamTools-static
[ 79%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/utils /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[ 84%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.4.0+dfsg /«BUILDDIR»/bamtools-2.4.0+dfsg/src/toolkit /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.a
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools-2.4.0
-- Installing: /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools
-- Removed runtime path from "/«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/bin/bamtools-2.4.0"
make[1]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/«BUILDDIR»/bamtools-2.4.0+dfsg'
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/lib*.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /«BUILDDIR»/bamtools-2.4.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.4.0 debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.4.0
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
dh_install
# no need to install different versions of bamtools
rm -rf debian/bamtools/usr/bin/bamtools
mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools
rm -f debian/libbamtools-dev/usr/share/doc/libbamtools-dev/html/jquery.js
ln -s /usr/share/javascript/jquery/jquery.js debian/libbamtools-dev/usr/share/doc/libbamtools-dev/html/jquery.js
make[1]: Leaving directory '/«BUILDDIR»/bamtools-2.4.0+dfsg'
dh_installdocs -a -O--parallel
dh_installchangelogs -a -O--parallel
dh_installman -a -O--parallel
dh_lintian -a -O--parallel
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.4.0/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.4.0 found in none of the libraries
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libbamtools-dev: unused substitution variable ${devlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.4.0+dfsg-2_armhf.deb'.
dpkg-deb: building package 'bamtools' in '../bamtools_2.4.0+dfsg-2_armhf.deb'.
dpkg-deb: building package 'libbamtools2.4.0' in '../libbamtools2.4.0_2.4.0+dfsg-2_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bamtools_2.4.0+dfsg-2_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bamtools-2.4.0+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151001-0440
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
bamtools_2.4.0+dfsg-2_armhf.changes:
────────────────────────────────────
Format: 1.8
Date: Thu, 24 Sep 2015 17:27:16 +1000
Source: bamtools
Binary: bamtools libbamtools-dev libbamtools2.4.0
Architecture: armhf
Version: 2.4.0+dfsg-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Kevin Murray <spam@kdmurray.id.au>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools2.4.0 - dynamic library for manipulating BAM (genome alignment) files
Changes:
bamtools (2.4.0+dfsg-2) unstable; urgency=medium
.
[ Kevin Murray ]
* Fix re-upload confusion
* Fix build of doxygen docs, add docs-base
* Use uscan file renaming to name upstream tarball bamtools-Vxxx.tar.gz
* Refresh patch queue
.
[ Andreas Tille]
* Fix linitan overides for bamtools
Checksums-Sha1:
39dd1723daf176bf3556da4f5cf7aea851694862 161064 bamtools_2.4.0+dfsg-2_armhf.deb
8647413bfa4d08937be35d75c4283ab51a7cd643 352478 libbamtools-dev_2.4.0+dfsg-2_armhf.deb
74a8367ace06d25fd859cf91669bfdf844f5db5a 156570 libbamtools2.4.0_2.4.0+dfsg-2_armhf.deb
Checksums-Sha256:
4d1f9303d870eb83181602fd7ca63be62c80d712936b7989e2375d3473cebb21 161064 bamtools_2.4.0+dfsg-2_armhf.deb
bd18d261bfa7d09cd2fe4c49a2d98e9dadebefcbfa7f06dc8c115914fc977b6f 352478 libbamtools-dev_2.4.0+dfsg-2_armhf.deb
1d91719997a96fc5d10507b8ed09e90c44bf14cc43befc7cc8d10fd4c594e057 156570 libbamtools2.4.0_2.4.0+dfsg-2_armhf.deb
Files:
dc1ad3eeade2aed6657010a088fbdec4 161064 science optional bamtools_2.4.0+dfsg-2_armhf.deb
8420b9ff9e4c8eff6b611543aa2e6b25 352478 libdevel optional libbamtools-dev_2.4.0+dfsg-2_armhf.deb
e322d0be20e95e10cb079649b13d8b2b 156570 libs optional libbamtools2.4.0_2.4.0+dfsg-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
bamtools_2.4.0+dfsg-2_armhf.deb
───────────────────────────────
new debian package, version 2.0.
size 161064 bytes: control archive=1312 bytes.
1805 bytes, 37 lines control
333 bytes, 5 lines md5sums
Package: bamtools
Version: 2.4.0+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 511
Depends: libbamtools2.4.0, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libjsoncpp0v5, libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
drwxr-xr-x root/root 0 2015-10-01 04:39 ./
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/bin/
-rwxr-xr-x root/root 506316 2015-10-01 04:39 ./usr/bin/bamtools
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/share/
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/share/doc/bamtools/
-rw-r--r-- root/root 694 2015-09-25 13:23 ./usr/share/doc/bamtools/changelog.Debian.gz
-rw-r--r-- root/root 1602 2015-09-25 13:23 ./usr/share/doc/bamtools/copyright
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/share/lintian/
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 71 2015-09-25 13:23 ./usr/share/lintian/overrides/bamtools
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/share/man/
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2015-10-01 04:39 ./usr/share/man/man1/bamtools.1.gz
libbamtools-dev_2.4.0+dfsg-2_armhf.deb
──────────────────────────────────────
new debian package, version 2.0.
size 352478 bytes: control archive=11125 bytes.
845 bytes, 21 lines control
37186 bytes, 404 lines md5sums
Package: libbamtools-dev
Source: bamtools
Version: 2.4.0+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4062
Depends: libbamtools2.4.0 (= 2.4.0+dfsg-2)
Section: libdevel
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
drwxr-xr-x root/root 0 2015-10-01 04:39 ./
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/include/
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/include/bamtools/
drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/include/bamtools/api/
-rw-r--r-- root/root 847 2015-06-16 16:50 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root 23756 2015-06-16 16:50 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root 14652 2015-06-16 16:50 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root 9682 2015-06-16 16:50 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root 2885 2015-06-16 16:50 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root 4676 2015-06-16 16:50 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root 4285 2015-06-16 16:50 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root 2208 2015-06-16 16:50 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root 3022 2015-06-16 16:50 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root 3725 2015-06-16 16:50 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root 2959 2015-06-16 16:50 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root 2389 2015-06-16 16:50 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root 3127 2015-06-16 16:50 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root 3449 2015-06-16 16:50 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root 3281 2015-06-16 16:50 ./usr/include/bamtools/api/SamReadGroupDictionary.h
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libbamtools2.4.0_2.4.0+dfsg-2_armhf.deb
───────────────────────────────────────
new debian package, version 2.0.
size 156570 bytes: control archive=1069 bytes.
888 bytes, 21 lines control
322 bytes, 4 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
35 bytes, 1 lines shlibs
Package: libbamtools2.4.0
Source: bamtools
Version: 2.4.0+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 510
Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
drwxr-xr-x root/root 0 2015-10-01 04:39 ./
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drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/lib/
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drwxr-xr-x root/root 0 2015-10-01 04:39 ./usr/share/doc/
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 101748
Build-Time: 454
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 403
Job: bamtools_2.4.0+dfsg-2
Machine Architecture: armhf
Package: bamtools
Package-Time: 915
Source-Version: 2.4.0+dfsg-2
Space: 101748
Status: successful
Version: 2.4.0+dfsg-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20151001-0440
Build needed 00:15:15, 101748k disc space