bamtools →
2.3.0+dfsg-3 →
armhf → 2015-05-24 04:48:21
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-01
╔══════════════════════════════════════════════════════════════════════════════╗
║ bamtools 2.3.0+dfsg-3 (armhf) 24 May 2015 04:35 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: bamtools
Version: 2.3.0+dfsg-3
Source Version: 2.3.0+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/bamtools-FtE5Mt/bamtools-2.3.0+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/bamtools-FtE5Mt' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-992a3233-7bff-47e4-bcfc-0b2182918958' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
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Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [7897 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [9672 kB]
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┌──────────────────────────────────────────────────────────────────────────────┐
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NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/bamtools.git
Need to get 167 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main bamtools 2.3.0+dfsg-3 (dsc) [2191 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main bamtools 2.3.0+dfsg-3 (tar) [157 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main bamtools 2.3.0+dfsg-3 (diff) [7420 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-8DudRl/apt_archive/sbuild-build-depends-core-dummy.deb'.
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
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Installing build dependencies
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Building dependency tree...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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0 upgraded, 1 newly installed, 0 to remove and 49 not upgraded.
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, libz-dev, libjsoncpp-dev, help2man
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, libz-dev, libjsoncpp-dev, help2man
dpkg-deb: building package `sbuild-build-depends-bamtools-dummy' in `/«BUILDDIR»/resolver-9gkBGA/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install bamtools build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cmake cmake-data d-shlibs debhelper file gettext gettext-base
groff-base help2man intltool-debian libarchive13 libasprintf0c2 libcroco3
libcurl3 libexpat1 libffi6 libglib2.0-0 libgnutls-deb0-28 libgssapi-krb5-2
libhogweed2 libidn11 libjsoncpp-dev libjsoncpp0 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap-2.4-2 liblzo2-2 libmagic1 libnettle4
libp11-kit0 libpipeline1 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1
libssl1.0.0 libtasn1-6 libunistring0 libxml2 man-db po-debconf zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation codeblocks eclipse ninja-build dh-make
gettext-doc groff lrzip gnutls-bin krb5-doc krb5-user less www-browser
libmail-box-perl
Recommended packages:
curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
ca-certificates libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales
libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
bsdmainutils cmake cmake-data d-shlibs debhelper file gettext gettext-base
groff-base help2man intltool-debian libarchive13 libasprintf0c2 libcroco3
libcurl3 libexpat1 libffi6 libglib2.0-0 libgnutls-deb0-28 libgssapi-krb5-2
libhogweed2 libidn11 libjsoncpp-dev libjsoncpp0 libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 libldap-2.4-2 liblzo2-2 libmagic1 libnettle4
libp11-kit0 libpipeline1 librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1
libssl1.0.0 libtasn1-6 libunistring0 libxml2 man-db po-debconf
sbuild-build-depends-bamtools-dummy zlib1g-dev
0 upgraded, 46 newly installed, 0 to remove and 49 not upgraded.
Need to get 16.2 MB/16.2 MB of archives.
After this operation, 54.5 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2a-1 [878 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.3-2 [31.1 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libnettle4 armhf 2.7.1-5 [178 kB]
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Get:10 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.23.1-2 [94.1 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.5-2 [43.9 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.15-2 [646 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-5 [10.9 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.12.1+dfsg-20 [54.9 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.12.1+dfsg-20 [108 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.12.1+dfsg-20 [258 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.12.1+dfsg-20 [128 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libidn11 armhf 1.30-1 [166 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-13 [65.5 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-13 [97.2 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.40+dfsg-1 [192 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main cmake-data all 3.2.2-2 [1046 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main liblzo2-2 armhf 2.08-1.2 [47.6 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libarchive13 armhf 3.1.2-11 [230 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main librtmp1 armhf 2.4+20150115.gita107cef-1 [54.0 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libssh2-1 armhf 1.5.0-2 [122 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libcurl3 armhf 7.42.1-2 [238 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-6 [60.2 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libjsoncpp0 armhf 0.6.0~rc2-3.1 [61.1 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main cmake armhf 3.2.2-2 [2224 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.44.0-3 [2399 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.3-2 [116 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main d-shlibs all 0.58 [16.3 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.3-2 [1167 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:42 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150507 [824 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main help2man armhf 1.46.6 [142 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libjsoncpp-dev armhf 0.6.0~rc2-3.1 [228 kB]
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update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-13) ...
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Setting up libldap-2.4-2:armhf (2.4.40+dfsg-1) ...
Setting up libmagic1:armhf (1:5.22+15-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
Setting up cmake-data (3.2.2-2) ...
Setting up liblzo2-2:armhf (2.08-1.2) ...
Setting up libarchive13:armhf (3.1.2-11) ...
Setting up librtmp1:armhf (2.4+20150115.gita107cef-1) ...
Setting up libssh2-1:armhf (1.5.0-2) ...
Setting up libcurl3:armhf (7.42.1-2) ...
Setting up libexpat1:armhf (2.1.0-6) ...
Setting up libjsoncpp0 (0.6.0~rc2-3.1) ...
Setting up cmake (3.2.2-2) ...
Setting up libglib2.0-0:armhf (2.44.0-3) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up file (1:5.22+15-2) ...
Setting up gettext-base (0.19.3-2) ...
Setting up d-shlibs (0.58) ...
Setting up gettext (0.19.3-2) ...
Setting up intltool-debian (0.35.0+20060710.2) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150507) ...
Setting up help2man (1.46.6) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up libjsoncpp-dev (0.6.0~rc2-3.1) ...
Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-18 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt4-1+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 cmake_3.2.2-2 cmake-data_3.2.2-2 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 d-shlibs_0.58 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150507 debianutils_4.4 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gettext_0.19.3-2 gettext-base_0.19.3-2 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 help2man_1.46.6 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8 libarchive13_3.1.2-11 libasan1_4.9.2-10 libasprintf0c2_0.19.3-2 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-7 libc-bin_2.19-18 libc-dev-bin_2.19-18 libc6_2.19-18 libc6-dev_2.19-18 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcurl3_7.42.1-2 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libexpat1_2.1.0-6 libfakeroot_1.20.2-1 libffi6_3.1-2 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.44.0-3 libgmp10_2:6.0.0+dfsg-6+rpi1 libgnutls-deb0-28_3.3.15-2 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libgssapi-krb5-2_1.12.1+dfsg-20 libhogweed2_2.7.1-5 libidn11_1.30-1 libisl10_0.12.2-2 libjsoncpp-dev_0.6.0~rc2-3.1 libjsoncpp0_0.6.0~rc2-3.1 libk5crypto3_1.12.1+dfsg-20 libkeyutils1_1.5.9-5 libklibc_2.0.4-2+rpi1 libkmod2_18-3 libkrb5-3_1.12.1+dfsg-20 libkrb5support0_1.12.1+dfsg-20 libldap-2.4-2_2.4.40+dfsg-1 liblocale-gettext-perl_1.05-8+b1 liblzma5_5.1.1alpha+20120614-2 liblzo2-2_2.08-1.2 libmagic1_1:5.22+15-2 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1 libncursesw5_5.9+20140913-1 libnettle4_2.7.1-5 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libp11-kit0_0.23.1-2 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-3.3 libpipeline1_1.4.0-1 libpng12-0_1.2.50-2 libprocps3_2:3.3.9-9 libreadline6_6.3-8 librtmp1_2.4+20150115.gita107cef-1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.25.2-6 libss2_1.42.12-1.1 libssh2-1_1.5.0-2 libssl1.0.0_1.0.2a-1 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsystemd0_215-17 libtasn1-6_4.5-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1 libubsan0_4.9.2-10 libudev1_215-17 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libxml2_2.9.1+dfsg1-5 linux-libc-dev_3.16.7-ckt4-1+rpi1 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-6 mountall_2.54 multiarch-support_2.19-18 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3 perl-base_5.20.2-3 perl-modules_5.20.2-3 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.9-9 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 startpar_0.59-3 systemd_215-17 systemd-sysv_215-17 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tzdata_2015c-1 udev_215-17 util-linux_2.25.2-6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon May 18 09:55:41 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bamtools_2.3.0+dfsg-3.dsc
dpkg-source: info: extracting bamtools in bamtools-2.3.0+dfsg
dpkg-source: info: unpacking bamtools_2.3.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking bamtools_2.3.0+dfsg-3.debian.tar.xz
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying 0002-support-out-of-source-build.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch
dpkg-source: info: applying 0006-Doxygen-reproducibility
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=POSIX
LOGNAME=root
MAIL=/var/mail/root
OLDPWD=/usr/share/debootstrap/scripts
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/root
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-992a3233-7bff-47e4-bcfc-0b2182918958
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
SHLVL=1
SSH_CLIENT=172.17.0.6 44468 22
SSH_CONNECTION=172.17.0.6 44468 172.17.2.1 22
SSH_TTY=/dev/pts/0
TERM=xterm
USER=buildd
_=/etc/init.d/buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package bamtools
dpkg-buildpackage: source version 2.3.0+dfsg-3
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build bamtools-2.3.0+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
dh_auto_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_auto_configure -a -O--parallel
cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None
-- The C compiler identification is GNU 4.9.2
-- The CXX compiler identification is GNU 4.9.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
-- Build files have been written to: /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf
dh_auto_build -a -O--parallel
make -j4
make[1]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/«BUILDDIR»/bamtools-2.3.0+dfsg -B/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
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make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-static
Scanning dependencies of target BamTools
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 39
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 1
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 40
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 2
[ 2%] [ 2%] [ 4%] [ 4%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamAlignment.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamAlignment.cpp
Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamMultiReader.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamMultiReader.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 41
[ 5%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamReader.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 3
[ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamReader.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 42
[ 7%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamWriter.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 4
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 43
[ 8%] [ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamWriter.cpp
Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamHeader.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 44
[ 10%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamProgram.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 45
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 46
[ 11%] [ 12%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamProgramChain.cpp
Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamReadGroup.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 5
[ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamHeader.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 6
[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamProgram.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 47
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 48
[ 15%] [ 17%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamReadGroupDictionary.cpp
Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamSequence.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 7
[ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamProgramChain.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 8
[ 19%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamReadGroup.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 49
[ 20%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamSequenceDictionary.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 9
[ 21%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamReadGroupDictionary.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 10
[ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamSequence.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 50
[ 23%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 11
[ 24%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamSequenceDictionary.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 51
[ 25%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 12
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 13
[ 26%] [ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 14
[ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 15
[ 29%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamReader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 16
[ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 17
[ 31%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 18
[ 32%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 19
[ 34%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 52
[ 35%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 20
[ 36%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 21
[ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamFile_p.cpp
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[ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamFtp_p.cpp
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[ 39%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamReader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 54
[ 40%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 55
[ 41%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 56
[ 42%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 23
[ 43%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 57
[ 44%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 24
[ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamPipe_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 25
[ 46%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 58
[ 47%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 26
[ 48%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/ByteArray_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 59
[ 50%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamFile_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 27
[ 51%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HostAddress_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 28
[ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HostInfo_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 60
[ 53%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamFtp_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 61
[ 54%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 29
[ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 30
[ 56%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 31
[ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
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[ 58%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
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[ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
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[ 60%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
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[ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
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[ 62%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamPipe_p.cpp
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[ 63%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
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[ 64%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
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[ 65%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/ByteArray_p.cpp
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[ 67%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HostAddress_p.cpp
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[ 68%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
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[ 69%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HostInfo_p.cpp
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[ 70%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
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[ 71%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/utils/BamException_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 68
[ 72%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 69
[ 73%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 70
[ 74%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
Linking CXX shared library ../../lib/libbamtools.so
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.3.0 -o ../../lib/libbamtools.so.2.3.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools.so
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38
[ 74%] Built target BamTools
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 71
[ 75%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 72
[ 76%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 73
[ 77%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 74
[ 78%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
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[ 79%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
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cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/utils/BamException_p.cpp
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
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cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils/bamtools_fasta.cpp
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cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils/bamtools_options.cpp
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Linking CXX static library ../../lib/libbamtools.a
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -P CMakeFiles/BamTools-static.dir/cmake_clean_target.cmake
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-static.dir/link.txt --verbose=1
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[ 85%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils/bamtools_utilities.cpp
Linking CXX static library ../../lib/libbamtools-utils.a
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
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cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
Scanning dependencies of target bamtools_cmd
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make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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[ 87%] [ 87%] [ 88%] [ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_coverage.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_count.cpp
Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_convert.cpp
Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_filter.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 85
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_header.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 86
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_index.cpp
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[ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_merge.cpp
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[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_random.cpp
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[ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_resolve.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 90
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_revert.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 91
[ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_sort.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 92
[ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_split.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 93
[ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_stats.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 94
[100%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools.cpp
Linking CXX executable ../../bin/bamtools
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o ../../bin/bamtools-2.3.0 -rdynamic ../../lib/libbamtools-utils.a -ljsoncpp ../../lib/libbamtools.so.2.3.0 -lz -Wl,-rpath,/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/lib:
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_symlink_executable ../../bin/bamtools-2.3.0 ../../bin/bamtools
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 81 82 83 84 85 86 87 88 89 90 91 92 93 94
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
dh_auto_test -a -O--parallel
fakeroot debian/rules binary-arch
dh binary-arch --parallel
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
dh_auto_install -a -O--parallel
make -j4 install DESTDIR=/«BUILDDIR»/bamtools-2.3.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/«BUILDDIR»/bamtools-2.3.0+dfsg -B/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools-static.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38
[ 80%] [ 80%] Built target BamTools-static
Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 77 78 79 80
[ 85%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'.
make[3]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 81 82 83 84 85 86 87 88 89 90 91 92 93 94
[100%] Built target bamtools_cmd
make[2]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.3.0
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.a
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools-2.3.0
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools
-- Removed runtime path from "/«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools-2.3.0"
make[1]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/«BUILDDIR»/bamtools-2.3.0+dfsg'
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/lib*.so
Library package automatic movement utility
--> zlib1g-dev package exists.
set -e
install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libbamtools2.3.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.3.0 debian/libbamtools2.3.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.3.0
install -d -m 755 debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
dh_install
# no need to install different versions of bamtools
rm -rf debian/bamtools/usr/bin/bamtools
mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools
make[1]: Leaving directory '/«BUILDDIR»/bamtools-2.3.0+dfsg'
dh_installdocs -a -O--parallel
dh_installchangelogs -a -O--parallel
dh_installman -a -O--parallel
dh_lintian -a -O--parallel
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_compress -a -O--parallel
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against libz.so.1 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.3.0/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.3.0 found in none of the libraries
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libbamtools-dev: unused substitution variable ${devlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package `libbamtools-dev' in `../libbamtools-dev_2.3.0+dfsg-3_armhf.deb'.
dpkg-deb: building package `bamtools' in `../bamtools_2.3.0+dfsg-3_armhf.deb'.
dpkg-deb: building package `libbamtools2.3.0' in `../libbamtools2.3.0_2.3.0+dfsg-3_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bamtools_2.3.0+dfsg-3_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build bamtools-2.3.0+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150524-0446
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
bamtools_2.3.0+dfsg-3_armhf.changes:
────────────────────────────────────
Format: 1.8
Date: Mon, 18 May 2015 11:53:14 +0200
Source: bamtools
Binary: bamtools libbamtools-dev libbamtools2.3.0
Architecture: armhf
Version: 2.3.0+dfsg-3
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools2.3.0 - dynamic library for manipulating BAM (genome alignment) files
Closes: 780437
Changes:
bamtools (2.3.0+dfsg-3) unstable; urgency=medium
.
[ Michael R. Crusoe ]
* Make Doxygen documentation generation reproducible by eliminating
timestamps.
.
[ Andreas Tille ]
* Install cmake file
* Fix some issues in formatting of long descriptions (thanks for the patch
to Daniele Forsi <dforsi@gmail.com>)
Closes: #780437
* cme fix dpkg-control
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Files:
2529b3a492233ff1109709a3190fb0c4 155398 science optional bamtools_2.3.0+dfsg-3_armhf.deb
e5ad8e32b5126938693579977a5ed201 192388 libdevel optional libbamtools-dev_2.3.0+dfsg-3_armhf.deb
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
bamtools_2.3.0+dfsg-3_armhf.deb
───────────────────────────────
new debian package, version 2.0.
size 155398 bytes: control archive=1381 bytes.
1803 bytes, 37 lines control
333 bytes, 5 lines md5sums
Package: bamtools
Version: 2.3.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 510
Depends: libbamtools2.3.0, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libjsoncpp0, libstdc++6 (>= 4.9), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
drwxr-xr-x root/root 0 2015-05-24 04:45 ./
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/bin/
-rwxr-xr-x root/root 518668 2015-05-24 04:45 ./usr/bin/bamtools
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/doc/bamtools/
-rw-r--r-- root/root 1551 2015-05-18 09:53 ./usr/share/doc/bamtools/copyright
-rw-r--r-- root/root 449 2015-05-18 09:53 ./usr/share/doc/bamtools/changelog.Debian.gz
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/man/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/man/man1/
-rw-r--r-- root/root 792 2015-05-24 04:45 ./usr/share/man/man1/bamtools.1.gz
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/lintian/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 79 2015-05-18 09:53 ./usr/share/lintian/overrides/bamtools
libbamtools-dev_2.3.0+dfsg-3_armhf.deb
──────────────────────────────────────
new debian package, version 2.0.
size 192388 bytes: control archive=1564 bytes.
845 bytes, 21 lines control
1879 bytes, 25 lines md5sums
Package: libbamtools-dev
Source: bamtools
Version: 2.3.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1052
Depends: libbamtools2.3.0 (= 2.3.0+dfsg-3)
Section: libdevel
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
drwxr-xr-x root/root 0 2015-05-24 04:46 ./
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/lib/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 965774 2015-05-24 04:45 ./usr/lib/arm-linux-gnueabihf/libbamtools.a
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/include/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/include/bamtools/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/include/bamtools/shared/
-rw-r--r-- root/root 2790 2013-07-24 20:24 ./usr/include/bamtools/shared/bamtools_global.h
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/include/bamtools/api/
-rw-r--r-- root/root 757 2013-07-24 20:24 ./usr/include/bamtools/api/api_global.h
-rw-r--r-- root/root 847 2013-07-24 20:24 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root 23763 2013-07-24 20:24 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root 14569 2013-07-24 20:24 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root 9682 2013-07-24 20:24 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root 2885 2013-07-24 20:24 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root 4676 2013-07-24 20:24 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root 4285 2013-07-24 20:24 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root 2207 2013-07-24 20:24 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root 3022 2013-07-24 20:24 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root 3725 2013-07-24 20:24 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root 2853 2013-07-24 20:24 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root 2294 2013-07-24 20:24 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root 3127 2013-07-24 20:24 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root 3336 2013-07-24 20:24 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root 3281 2013-07-24 20:24 ./usr/include/bamtools/api/SamReadGroupDictionary.h
-rw-r--r-- root/root 2454 2013-07-24 20:24 ./usr/include/bamtools/api/SamSequence.h
-rw-r--r-- root/root 3248 2013-07-24 20:24 ./usr/include/bamtools/api/SamSequenceDictionary.h
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/include/bamtools/api/algorithms/
-rw-r--r-- root/root 12112 2013-07-24 20:24 ./usr/include/bamtools/api/algorithms/Sort.h
-rw-r--r-- root/root 852 2015-05-24 04:40 ./usr/include/bamtools/bamtools_version.h
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/
drwxr-xr-x root/root 0 2015-05-18 09:53 ./usr/share/cmake/
drwxr-xr-x root/root 0 2015-05-18 09:53 ./usr/share/cmake/bamtools/
-rw-r--r-- root/root 1574 2015-05-18 09:53 ./usr/share/cmake/bamtools/bamtools-config.cmake
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/doc/libbamtools-dev/
-rw-r--r-- root/root 1551 2015-05-18 09:53 ./usr/share/doc/libbamtools-dev/copyright
-rw-r--r-- root/root 449 2015-05-18 09:53 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz
lrwxrwxrwx root/root 0 2015-05-24 04:45 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.3.0
libbamtools2.3.0_2.3.0+dfsg-3_armhf.deb
───────────────────────────────────────
new debian package, version 2.0.
size 138532 bytes: control archive=1120 bytes.
888 bytes, 21 lines control
243 bytes, 3 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
132 bytes, 7 lines * postrm #!/bin/sh
35 bytes, 1 lines shlibs
Package: libbamtools2.3.0
Source: bamtools
Version: 2.3.0+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 479
Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.9), zlib1g (>= 1:1.1.4)
Section: libs
Priority: optional
Homepage: https://github.com/pezmaster31/bamtools/wiki
Description: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
drwxr-xr-x root/root 0 2015-05-24 04:45 ./
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/lib/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 487628 2015-05-24 04:45 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.3.0
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-05-24 04:45 ./usr/share/doc/libbamtools2.3.0/
-rw-r--r-- root/root 1551 2015-05-18 09:53 ./usr/share/doc/libbamtools2.3.0/copyright
-rw-r--r-- root/root 449 2015-05-18 09:53 ./usr/share/doc/libbamtools2.3.0/changelog.Debian.gz
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 71084
Build-Time: 374
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 243
Job: bamtools_2.3.0+dfsg-3
Machine Architecture: armhf
Package: bamtools
Package-Time: 682
Source-Version: 2.3.0+dfsg-3
Space: 71084
Status: successful
Version: 2.3.0+dfsg-3
────────────────────────────────────────────────────────────────────────────────
Finished at 20150524-0446
Build needed 00:11:22, 71084k disc space