Raspbian Package Auto-Building

Build log for bamtools (2.3.0+dfsg-1) on armhf

bamtools2.3.0+dfsg-1armhf → 2014-04-27 07:00:19

sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on bm-wb-01

╔══════════════════════════════════════════════════════════════════════════════╗
║ bamtools 2.3.0+dfsg-1 (armhf)                              27 Apr 2014 06:49 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: bamtools
Version: 2.3.0+dfsg-1
Source Version: 2.3.0+dfsg-1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/bamtools-bgUfne/bamtools-2.3.0+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/bamtools-bgUfne' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-da55731f-76b3-4759-aa64-a28a2ffaaa0d' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot                                                                │
└──────────────────────────────────────────────────────────────────────────────┘

Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7385 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8555 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 16.0 MB in 37s (424 kB/s)
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Check APT
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Checking available source versions...

Download source files with APT
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Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'bamtools' packaging is maintained in the 'Git' version control system at:
git://anonscm.debian.org/debian-med/bamtools.git
Need to get 166 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main bamtools 2.3.0+dfsg-1 (dsc) [2193 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main bamtools 2.3.0+dfsg-1 (tar) [157 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main bamtools 2.3.0+dfsg-1 (diff) [6776 B]
Fetched 166 kB in 0s (572 kB/s)
Download complete and in download only mode

Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-DyoApE/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 47 not upgraded.
Need to get 0 B/818 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11599 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9.0.0), d-shlibs, cmake, libz-dev, libjsoncpp-dev, help2man
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9.0.0), d-shlibs, cmake, libz-dev, libjsoncpp-dev, help2man
dpkg-deb: building package `sbuild-build-depends-bamtools-dummy' in `/«BUILDDIR»/resolver-NCG3wx/apt_archive/sbuild-build-depends-bamtools-dummy.deb'.
OK
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install bamtools build dependencies (apt-based resolver)                     │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils cmake cmake-data d-shlibs debhelper file gettext gettext-base
  groff-base help2man intltool-debian libarchive13 libasprintf0c2 libcroco3
  libcurl3 libexpat1 libffi6 libgcrypt11 libglib2.0-0 libgnutls26
  libgpg-error0 libgssapi-krb5-2 libhogweed2 libidn11 libjsoncpp-dev
  libjsoncpp0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libldap-2.4-2 liblzo2-2 libmagic1 libnettle4 libp11-kit0 libpipeline1
  librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl1.0.0 libtasn1-6
  libunistring0 libxml2 man-db po-debconf zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation codeblocks eclipse dh-make gettext-doc
  groff lrzip rng-tools krb5-doc krb5-user less www-browser libmail-box-perl
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  ca-certificates libglib2.0-data shared-mime-info krb5-locales
  libsasl2-modules xml-core libmail-sendmail-perl
The following NEW packages will be installed:
  bsdmainutils cmake cmake-data d-shlibs debhelper file gettext gettext-base
  groff-base help2man intltool-debian libarchive13 libasprintf0c2 libcroco3
  libcurl3 libexpat1 libffi6 libgcrypt11 libglib2.0-0 libgnutls26
  libgpg-error0 libgssapi-krb5-2 libhogweed2 libidn11 libjsoncpp-dev
  libjsoncpp0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libldap-2.4-2 liblzo2-2 libmagic1 libnettle4 libp11-kit0 libpipeline1
  librtmp1 libsasl2-2 libsasl2-modules-db libssh2-1 libssl1.0.0 libtasn1-6
  libunistring0 libxml2 man-db po-debconf sbuild-build-depends-bamtools-dummy
  zlib1g-dev
0 upgraded, 48 newly installed, 0 to remove and 47 not upgraded.
Need to get 16.5 MB/16.5 MB of archives.
After this operation, 51.1 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.3.0-1 [21.1 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main libssl1.0.0 armhf 1.0.1g-3 [824 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-5 [962 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.7.1-1 [964 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.2-1 [29.0 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libgpg-error0 armhf 1.12-0.2 [78.9 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libgcrypt11 armhf 1.5.3-4 [233 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.1~rc1+r3.0.13-12 [17.6 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libp11-kit0 armhf 0.20.2-5 [66.1 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libtasn1-6 armhf 3.4-3 [42.6 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libgnutls26 armhf 2.12.23-13 [490 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main libkeyutils1 armhf 1.5.6-1 [7900 B]
Get:14 http://172.17.0.1/private/ jessie-staging/main libkrb5support0 armhf 1.12.1+dfsg-1 [52.3 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libk5crypto3 armhf 1.12.1+dfsg-1 [105 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libkrb5-3 armhf 1.12.1+dfsg-1 [245 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libgssapi-krb5-2 armhf 1.12.1+dfsg-1 [121 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libidn11 armhf 1.28-1 [181 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-9 [64.9 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libsasl2-2 armhf 2.1.26.dfsg1-9 [96.2 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libldap-2.4-2 armhf 2.4.39-1+rpi1 [186 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.17-1 [225 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main liblzo2-2 armhf 2.06-1.2 [55.9 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libnettle4 armhf 2.7.1-1 [208 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libarchive13 armhf 3.1.2-8 [227 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.40.0-2+rpi1 [2249 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libhogweed2 armhf 2.7.1-1 [125 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main librtmp1 armhf 2.4+20131018.git79459a2-2 [53.6 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libssh2-1 armhf 1.4.3-2 [127 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libcurl3 armhf 7.36.0-1+b1 [228 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.17-1 [55.3 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.2-1 [112 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main cmake-data all 2.8.12.1-1.2 [1285 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main cmake armhf 2.8.12.1-1.2 [2182 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main d-shlibs all 0.54 [15.8 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.2-1 [1137 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20140228 [691 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main help2man armhf 1.45.1 [95.8 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libjsoncpp0 armhf 0.6.0~rc2-3 [80.8 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main libjsoncpp-dev armhf 0.6.0~rc2-3 [382 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libpipeline1:armhf (1.3.0-1) ...
Setting up libssl1.0.0:armhf (1.0.1g-3) ...
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Setting up bsdmainutils (9.0.5) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.6.7.1-1) ...
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Setting up libgpg-error0:armhf (1.12-0.2) ...
Setting up libgcrypt11:armhf (1.5.3-4) ...
Setting up libffi6:armhf (3.1~rc1+r3.0.13-12) ...
Setting up libp11-kit0:armhf (0.20.2-5) ...
Setting up libtasn1-6:armhf (3.4-3) ...
Setting up libgnutls26:armhf (2.12.23-13) ...
Setting up libkeyutils1:armhf (1.5.6-1) ...
Setting up libkrb5support0:armhf (1.12.1+dfsg-1) ...
Setting up libk5crypto3:armhf (1.12.1+dfsg-1) ...
Setting up libkrb5-3:armhf (1.12.1+dfsg-1) ...
Setting up libgssapi-krb5-2:armhf (1.12.1+dfsg-1) ...
Setting up libidn11:armhf (1.28-1) ...
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Setting up libsasl2-2:armhf (2.1.26.dfsg1-9) ...
Setting up libldap-2.4-2:armhf (2.4.39-1+rpi1) ...
Setting up libmagic1:armhf (1:5.17-1) ...
Setting up libxml2:armhf (2.9.1+dfsg1-3) ...
Setting up liblzo2-2:armhf (2.06-1.2) ...
Setting up libnettle4:armhf (2.7.1-1) ...
Setting up libarchive13:armhf (3.1.2-8) ...
Setting up libglib2.0-0:armhf (2.40.0-2+rpi1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-2) ...
Setting up libhogweed2:armhf (2.7.1-1) ...
Setting up librtmp1:armhf (2.4+20131018.git79459a2-2) ...
Setting up libssh2-1:armhf (1.4.3-2) ...
Setting up libcurl3:armhf (7.36.0-1+b1) ...
Setting up libexpat1:armhf (2.1.0-4) ...
Setting up libunistring0:armhf (0.9.3-5) ...
Setting up file (1:5.17-1) ...
Setting up gettext-base (0.18.3.2-1) ...
Setting up cmake-data (2.8.12.1-1.2) ...
Setting up cmake (2.8.12.1-1.2) ...
Setting up d-shlibs (0.54) ...
Setting up gettext (0.18.3.2-1) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20140228) ...
Setting up help2man (1.45.1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
Setting up libjsoncpp0 (0.6.0~rc2-3) ...
Setting up libjsoncpp-dev (0.6.0~rc2-3) ...
Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.18-4) ...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.13-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6+rpi1 g++-4.8_4.8.2-16 gcc-4.8_4.8.2-16 libc6-dev_2.18-4 libstdc++-4.8-dev_4.8.2-16 libstdc++6_4.8.2-16 linux-libc-dev_3.12.6-2+rpi1
Package versions: apt_0.9.15.4 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 cmake_2.8.12.1-1.2 cmake-data_2.8.12.1-1.2 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-16 d-shlibs_0.54 dash_0.5.7-4 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20140228 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.17.6+rpi1 dpkg-dev_1.17.6+rpi1 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.18.4-2 file_1:5.17-1 findutils_4.4.2-7 g++_4:4.8.2-2 g++-4.8_4.8.2-16 gcc_4:4.8.2-2 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-10+rpi1 gcc-4.8_4.8.2-16 gcc-4.8-base_4.8.2-16 gettext_0.18.3.2-1 gettext-base_0.18.3.2-1 gnupg_1.4.16-1.1 gpgv_1.4.16-1.1 grep_2.16-1 groff-base_1.22.2-5 gzip_1.6-3 help2man_1.45.1 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-51 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.2-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_0.9.15.4 libarchive13_3.1.2-8 libasan0_4.8.2-16 libasprintf0c2_0.18.3.2-1 libatomic1_4.8.2-16 libattr1_1:2.4.47-1 libaudit-common_1:2.3.3-4 libaudit1_1:2.3.3-4 libblkid1_2.20.1-5.6 libbz2-1.0_1.0.6-5 libc-bin_2.18-4 libc-dev-bin_2.18-4 libc6_2.18-4 libc6-dev_2.18-4 libcap2_1:2.22-1.2 libcloog-isl4_0.18.2-1 libcomerr2_1.42.9-3 libcroco3_0.6.8-2 libcurl3_7.36.0-1+b1 libdb5.1_5.1.29-6 libdb5.3_5.3.28-3 libdbus-1-3_1.8.0-1 libdpkg-perl_1.17.6+rpi1 libexpat1_2.1.0-4 libffi6_3.1~rc1+r3.0.13-12 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-16 libgcc1_1:4.8.2-16 libgcrypt11_1.5.3-4 libgdbm3_1.8.3-12 libglib2.0-0_2.40.0-2+rpi1 libgmp10_2:5.1.3+dfsg-1 libgnutls26_2.12.23-13 libgomp1_4.8.2-16 libgpg-error0_1.12-0.2 libgssapi-krb5-2_1.12.1+dfsg-1 libhogweed2_2.7.1-1 libidn11_1.28-1 libisl10_0.12.2-1 libjsoncpp-dev_0.6.0~rc2-3 libjsoncpp0_0.6.0~rc2-3 libk5crypto3_1.12.1+dfsg-1 libkeyutils1_1.5.6-1 libklibc_2.0.2-1+rpi1 libkmod2_16-2 libkrb5-3_1.12.1+dfsg-1 libkrb5support0_1.12.1+dfsg-1 libldap-2.4-2_2.4.39-1+rpi1 liblocale-gettext-perl_1.05-7+b3 liblzma5_5.1.1alpha+20120614-2 liblzo2-2_2.06-1.2 libmagic1_1:5.17-1 libmount1_2.20.1-5.6 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20140118-1 libncursesw5_5.9+20140118-1 libnettle4_2.7.1-1 libp11-kit0_0.20.2-5 libpam-modules_1.1.8-2 libpam-modules-bin_1.1.8-2 libpam-runtime_1.1.8-2 libpam0g_1.1.8-2 libpcre3_1:8.31-2 libpipeline1_1.3.0-1 libprocps0_1:3.3.4-2 libprocps3_1:3.3.9-2 libreadline6_6.2+dfsg-0.1 librtmp1_2.4+20131018.git79459a2-2 libsasl2-2_2.1.26.dfsg1-9 libsasl2-modules-db_2.1.26.dfsg1-9 libselinux1_2.2.2-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libslang2_2.2.4-16 libss2_1.42.9-3 libssh2-1_1.4.3-2 libssl1.0.0_1.0.1g-3 libstdc++-4.8-dev_4.8.2-16 libstdc++6_4.8.2-16 libtasn1-6_3.4-3 libtext-charwidth-perl_0.04-7+b3 libtext-iconv-perl_1.7-5+b3 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-1 libtinfo5_5.9+20140118-1 libudev1_204-7 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.6 libxml2_2.9.1+dfsg1-3 linux-libc-dev_3.12.6-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.7.1-1 mawk_1.3.3-17 mount_2.20.1-5.6 multiarch-support_2.18-4 nano_2.2.6-1 ncurses-base_5.9+20140118-1 ncurses-bin_5.9+20140118-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.2-2 perl-base_5.18.2-2 perl-modules_5.18.2-2 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.9-2 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 sysv-rc_2.88dsf-51 sysvinit_2.88dsf-51 sysvinit-core_2.88dsf-51 sysvinit-utils_2.88dsf-51 tar_1.27.1-1 tzdata_2013i-1 udev_204-7 util-linux_2.20.1-5.6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Apr 12 20:54:02 2014 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bamtools_2.3.0+dfsg-1.dsc
dpkg-source: info: extracting bamtools in bamtools-2.3.0+dfsg
dpkg-source: info: unpacking bamtools_2.3.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking bamtools_2.3.0+dfsg-1.debian.tar.xz
dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch
dpkg-source: info: applying 0002-support-out-of-source-build.patch
dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch
dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

APT_CONFIG=/var/lib/sbuild/apt.conf
COLUMNS=80
CONSOLE=/dev/console
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INIT_VERSION=sysvinit-2.88
LC_ALL=POSIX
LINES=24
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PREVLEVEL=N
PWD=/
RUNLEVEL=2
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-da55731f-76b3-4759-aa64-a28a2ffaaa0d
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
init=/sbin/init
previous=N
rootmnt=/root
runlevel=2

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package bamtools
dpkg-buildpackage: source version 2.3.0+dfsg-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build bamtools-2.3.0+dfsg
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
dh clean --parallel
   dh_testdir -O--parallel
   dh_auto_clean -O--parallel
   dh_clean -O--parallel
 debian/rules build-arch
dh build-arch --parallel
   dh_testdir -a -O--parallel
   dh_auto_configure -a -O--parallel
-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Configuring done
-- Generating done
-- Build files have been written to: /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf
   dh_auto_build -a -O--parallel
make[1]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/«BUILDDIR»/bamtools-2.3.0+dfsg -B/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools
Scanning dependencies of target BamTools-static
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 1
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 39
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 40
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 2
[  2%] [  2%] [  4%] [  4%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o
Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamAlignment.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamAlignment.cpp
Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o
Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamMultiReader.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamMultiReader.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 3
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 4
[  5%] [  6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamReader.cpp
Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamWriter.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 5
[  7%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamHeader.cpp
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[  8%] /usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 6
Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamReader.cpp
[  9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamProgram.cpp
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[ 10%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/BamWriter.cpp
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[ 11%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamHeader.cpp
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[ 12%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamProgramChain.cpp
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[ 13%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamProgram.cpp
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[ 14%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamProgramChain.cpp
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[ 15%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamReadGroup.cpp
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[ 17%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamReadGroup.cpp
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[ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamReadGroupDictionary.cpp
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[ 19%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamSequence.cpp
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[ 20%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamReadGroupDictionary.cpp
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[ 21%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamSequence.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 11
[ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamSequenceDictionary.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 49
[ 23%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/SamSequenceDictionary.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 12
[ 24%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 50
[ 25%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamHeader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 13
[ 26%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 51
[ 27%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 14
[ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 52
[ 29%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp
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[ 30%] /usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 53
Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamReader_p.cpp
[ 31%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamReader_p.cpp
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/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 54
[ 32%] [ 34%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/bam/BamWriter_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 55
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[ 36%] [ 36%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o
Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp
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[ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 56
[ 38%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 57
[ 39%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 19
[ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 58
[ 41%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 20
[ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 59
[ 43%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamFile_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 21
[ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamFile_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 60
[ 45%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamFtp_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 22
[ 46%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamFtp_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 61
[ 47%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 62
[ 48%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamPipe_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 63
[ 50%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 64
[ 51%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/ByteArray_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 23
[ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 65
[ 53%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HostAddress_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 66
[ 54%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HostInfo_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 67
[ 55%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 68
[ 56%] /usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 69
Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
[ 57%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
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[ 58%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
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[ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BamPipe_p.cpp
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[ 60%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
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[ 61%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
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Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/BgzfStream_p.cpp
[ 63%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 26
[ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/ByteArray_p.cpp
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[ 65%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
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[ 67%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HostAddress_p.cpp
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[ 68%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HostInfo_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 29
[ 69%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/HttpHeader_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 30
[ 70%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/ILocalIODevice_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 31
[ 71%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/RollingBuffer_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 32
[ 72%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocket_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 75
[ 73%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 76
[ 74%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/utils/BamException_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 33
[ 75%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 34
[ 76%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 35
[ 77%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamFormatParser_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 36
[ 78%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 37
[ 79%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp
Linking CXX static library ../../lib/libbamtools.a
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -P CMakeFiles/BamTools-static.dir/cmake_clean_target.cmake
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-static.dir/link.txt --verbose=1
/usr/bin/ar cr ../../lib/libbamtools.a  CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o CMakeFiles/BamTools-static.dir/BamReader.cpp.o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o CMakeFiles/BamTools-static.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools-static.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o
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[ 79%] Built target BamTools-static
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[ 80%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++   -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -fPIC -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include    -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api/internal/utils/BamException_p.cpp
Linking CXX shared library ../../lib/libbamtools.so
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG  -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.3.0 -o ../../lib/libbamtools.so.2.3.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz 
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools.so
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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[ 80%] Built target BamTools
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
Scanning dependencies of target BamTools-utils
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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[ 82%] [ 82%] [ 85%] [ 85%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o
Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o
Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o
Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++   -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api    -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils/bamtools_fasta.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++   -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api    -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils/bamtools_options.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++   -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api    -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils/bamtools_utilities.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++   -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api    -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils/bamtools_pileup_engine.cpp
Linking CXX static library ../../lib/libbamtools-utils.a
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1
/usr/bin/ar cr ../../lib/libbamtools-utils.a  CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o
/usr/bin/ranlib ../../lib/libbamtools-utils.a
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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[ 85%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
Scanning dependencies of target bamtools_cmd
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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[ 87%] [ 87%] [ 89%] [ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o
Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_count.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_convert.cpp
Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o
Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_coverage.cpp
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_filter.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 85
[ 90%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_header.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 86
[ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_index.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 87
[ 92%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_merge.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 88
[ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_random.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 89
[ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_resolve.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 90
[ 95%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_revert.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 91
[ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_sort.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 92
[ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_split.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 93
[ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools_stats.cpp
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 94
[100%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++   -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src -I/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/api -I/«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils    -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit/bamtools.cpp
Linking CXX executable ../../bin/bamtools
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1
/usr/bin/c++   -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -O3 -DNDEBUG   -Wl,-z,relro CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o  -o ../../bin/bamtools-2.3.0 -rdynamic ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools-utils.a -ljsoncpp ../../lib/libbamtools.so.2.3.0 -lz -Wl,-rpath,/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/lib: 
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_symlink_executable ../../bin/bamtools-2.3.0 ../../bin/bamtools
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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   dh_auto_test -a -O--parallel
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make[1]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -H/«BUILDDIR»/bamtools-2.3.0+dfsg -B/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend
make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color=
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build
make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for `src/api/CMakeFiles/BamTools.dir/build'.
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make[3]: Nothing to be done for `src/api/CMakeFiles/BamTools-static.dir/build'.
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles  1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38
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[ 80%] [ 80%] Built target BamTools
Built target BamTools-static
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/utils /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for `src/utils/CMakeFiles/BamTools-utils.dir/build'.
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_report /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles  77 78 79 80
[ 85%] Built target BamTools-utils
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
cd /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /«BUILDDIR»/bamtools-2.3.0+dfsg /«BUILDDIR»/bamtools-2.3.0+dfsg/src/toolkit /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color=
make[3]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build
make[3]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for `src/toolkit/CMakeFiles/bamtools_cmd.dir/build'.
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[100%] Built target bamtools_cmd
make[2]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
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make[2]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.3.0
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.a
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools-2.3.0
-- Installing: /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools
-- Removed runtime path from "/«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools-2.3.0"
make[1]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf'
   debian/rules override_dh_install
make[1]: Entering directory `/«BUILDDIR»/bamtools-2.3.0+dfsg'
# since the upstream build does not create versioned we need to tweak d-shlibmove
cp /usr/bin/d-shlibmove /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/d-shlibmove
patch -p0 < debian/d-shlibmove.patch
patching file debian/d-shlibmove
/«BUILDDIR»/bamtools-2.3.0+dfsg/debian/d-shlibmove --commit \
		    --multiarch \
		    --devunversioned \
		    --exclude-la \
		    --movedev debian/tmp/usr/include/* usr/include \
		    debian/tmp/usr/lib/lib*.so
Library package automatic movement utility
 --> zlib1g-dev package exists.
set -e
install -d -m 755  debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755  debian/libbamtools2.3.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf
mv /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.3.0 debian/libbamtools2.3.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libbamtools-dev
PKGSHL=libbamtools2.3.0
install -d -m 755  debian/libbamtools-dev/usr/include
mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include
rm /«BUILDDIR»/bamtools-2.3.0+dfsg/debian/d-shlibmove
dh_install
# no need to install different versions of bamtools
rm -rf debian/bamtools/usr/bin/bamtools
mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools
make[1]: Leaving directory `/«BUILDDIR»/bamtools-2.3.0+dfsg'
   dh_installdocs -a -O--parallel
   dh_installchangelogs -a -O--parallel
   dh_installman -a -O--parallel
   dh_lintian -a -O--parallel
   dh_perl -a -O--parallel
   dh_link -a -O--parallel
   dh_compress -a -O--parallel
   dh_fixperms -a -O--parallel
   dh_strip -a -O--parallel
   dh_makeshlibs -a -O--parallel
   dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/bamtools/usr/bin/bamtools was not linked against libz.so.1 (it uses none of the library's symbols)
   dh_installdeb -a -O--parallel
   dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libbamtools-dev: unused substitution variable ${devlibs:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package libbamtools2.3.0: unused substitution variable ${misc:Pre-Depends}
   dh_md5sums -a -O--parallel
   dh_builddeb -a -O--parallel
dpkg-deb: building package `bamtools' in `../bamtools_2.3.0+dfsg-1_armhf.deb'.
dpkg-deb: building package `libbamtools2.3.0' in `../libbamtools2.3.0_2.3.0+dfsg-1_armhf.deb'.
dpkg-deb: building package `libbamtools-dev' in `../libbamtools-dev_2.3.0+dfsg-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../bamtools_2.3.0+dfsg-1_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build bamtools-2.3.0+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140427-0659

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


bamtools_2.3.0+dfsg-1_armhf.changes:
────────────────────────────────────

Format: 1.8
Date: Wed, 02 Apr 2014 13:11:47 +0200
Source: bamtools
Binary: bamtools libbamtools-dev libbamtools2.3.0
Architecture: armhf
Version: 2.3.0+dfsg-1
Distribution: jessie-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description: 
 bamtools   - toolkit for manipulating BAM (genome alignment) files
 libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
 libbamtools2.3.0 - dynnamic library for manipulating BAM (genome alignment) files
Closes: 692498
Changes: 
 bamtools (2.3.0+dfsg-1) unstable; urgency=low
 .
   * Initial release (Closes: #692498)
Checksums-Sha1: 
 f49a45984204b59ceb1791f431aac6cd0559e889 154722 bamtools_2.3.0+dfsg-1_armhf.deb
 d133ec40d0ccb730355698e2d5b79473c80fded8 183798 libbamtools-dev_2.3.0+dfsg-1_armhf.deb
 4a0adc7333b42df4cc89f97a5a7e8590495b900d 132654 libbamtools2.3.0_2.3.0+dfsg-1_armhf.deb
Checksums-Sha256: 
 8c12f5cfa66ea43b3527e60da65b78264f6ff03a4ca33ec28c37d7ec15e4f192 154722 bamtools_2.3.0+dfsg-1_armhf.deb
 7474d54e7140873b2d74dbe61647f7fb6deedd1101cde314f0b2b4fff858d241 183798 libbamtools-dev_2.3.0+dfsg-1_armhf.deb
 e0409433b644a021367cfaf3363ca3acb8e98e8d5a37770355a4438608af0e3e 132654 libbamtools2.3.0_2.3.0+dfsg-1_armhf.deb
Files: 
 d2527e562f44e83ab056a5ae1dc43352 154722 science optional bamtools_2.3.0+dfsg-1_armhf.deb
 45f87c5d84f520a13687a349cae1ff1e 183798 libdevel optional libbamtools-dev_2.3.0+dfsg-1_armhf.deb
 3c283b476e0b496ed965638d65c26940 132654 libs optional libbamtools2.3.0_2.3.0+dfsg-1_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


bamtools_2.3.0+dfsg-1_armhf.deb
───────────────────────────────

 new debian package, version 2.0.
 size 154722 bytes: control archive=1381 bytes.
    1789 bytes,    37 lines      control              
     333 bytes,     5 lines      md5sums              
 Package: bamtools
 Version: 2.3.0+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 494
 Depends: libbamtools2.3.0, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libjsoncpp0, libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4)
 Section: science
 Priority: optional
 Homepage: https://github.com/pezmaster31/bamtools/wiki
 Description: toolkit for manipulating BAM (genome alignment) files
  BamTools facilitates research analysis and data management using BAM
  files.  It copes with the enormous amount of data produced by current
  sequencing technologies that is typically stored in compressed, binary
  formats that are not easily handled by the text-based parsers commonly
  used in bioinformatics research.
  .
  BamTools provides both a C++ API for BAM file support as well as a
  command-line toolkit.
  .
  This is the bamtools command-line toolkit
  .
  Available bamtools commands:
  convert  Converts between BAM and a number of other formats
  count    Prints number of alignments in BAM file(s)
  coverage Prints coverage statistics from the input BAM file
  filter   Filters BAM file(s) by user-specified criteria
  header   Prints BAM header information
  index    Generates index for BAM file
  merge    Merge multiple BAM files into single file
  random   Select random alignments from existing BAM file(s), intended more as
           a testing tool.
  resolve  Resolves paired-end reads (marking the IsProperPair flag as needed)
  revert   Removes duplicate marks and restores original base qualities
  sort     Sorts the BAM file according to some criteria
  split    Splits a BAM file on user-specified property, creating a new BAM
           output file for each value found
  stats    Prints some basic statistics from input BAM file(s)

drwxr-xr-x root/root         0 2014-04-27 06:58 ./
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/bin/
-rwxr-xr-x root/root    502276 2014-04-27 06:58 ./usr/bin/bamtools
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/doc/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/doc/bamtools/
-rw-r--r-- root/root      1575 2014-04-12 20:50 ./usr/share/doc/bamtools/copyright
-rw-r--r-- root/root       158 2014-04-12 20:50 ./usr/share/doc/bamtools/changelog.Debian.gz
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/man/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/man/man1/
-rw-r--r-- root/root       792 2014-04-27 06:58 ./usr/share/man/man1/bamtools.1.gz
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/lintian/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/lintian/overrides/
-rw-r--r-- root/root        79 2014-04-12 20:50 ./usr/share/lintian/overrides/bamtools


libbamtools-dev_2.3.0+dfsg-1_armhf.deb
──────────────────────────────────────

 new debian package, version 2.0.
 size 183798 bytes: control archive=1526 bytes.
     844 bytes,    21 lines      control              
    1798 bytes,    24 lines      md5sums              
 Package: libbamtools-dev
 Source: bamtools
 Version: 2.3.0+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1020
 Depends: libbamtools2.3.0 (= 2.3.0+dfsg-1)
 Section: libdevel
 Priority: optional
 Homepage: https://github.com/pezmaster31/bamtools/wiki
 Description: C++ API for manipulating BAM (genome alignment) files
  BamTools facilitates research analysis and data management using BAM
  files.  It copes with the enormous amount of data produced by current
  sequencing technologies that is typically stored in compressed, binary
  formats that are not easily handled by the text-based parsers commonly
  used in bioinformatics research.
  .
  BamTools provides both a C++ API for BAM file support as well as a
  command-line toolkit.
  .
  This is the developers API package

drwxr-xr-x root/root         0 2014-04-27 06:58 ./
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/lib/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root    934292 2014-04-27 06:58 ./usr/lib/arm-linux-gnueabihf/libbamtools.a
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/include/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/include/bamtools/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/include/bamtools/shared/
-rw-r--r-- root/root      2790 2013-07-24 20:24 ./usr/include/bamtools/shared/bamtools_global.h
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/include/bamtools/api/
-rw-r--r-- root/root       757 2013-07-24 20:24 ./usr/include/bamtools/api/api_global.h
-rw-r--r-- root/root       847 2013-07-24 20:24 ./usr/include/bamtools/api/BamAlgorithms.h
-rw-r--r-- root/root     23763 2013-07-24 20:24 ./usr/include/bamtools/api/BamAlignment.h
-rw-r--r-- root/root     14569 2013-07-24 20:24 ./usr/include/bamtools/api/BamAux.h
-rw-r--r-- root/root      9682 2013-07-24 20:24 ./usr/include/bamtools/api/BamConstants.h
-rw-r--r-- root/root      2885 2013-07-24 20:24 ./usr/include/bamtools/api/BamIndex.h
-rw-r--r-- root/root      4676 2013-07-24 20:24 ./usr/include/bamtools/api/BamMultiReader.h
-rw-r--r-- root/root      4285 2013-07-24 20:24 ./usr/include/bamtools/api/BamReader.h
-rw-r--r-- root/root      2207 2013-07-24 20:24 ./usr/include/bamtools/api/BamWriter.h
-rw-r--r-- root/root      3022 2013-07-24 20:24 ./usr/include/bamtools/api/IBamIODevice.h
-rw-r--r-- root/root      3725 2013-07-24 20:24 ./usr/include/bamtools/api/SamConstants.h
-rw-r--r-- root/root      2853 2013-07-24 20:24 ./usr/include/bamtools/api/SamHeader.h
-rw-r--r-- root/root      2294 2013-07-24 20:24 ./usr/include/bamtools/api/SamProgram.h
-rw-r--r-- root/root      3127 2013-07-24 20:24 ./usr/include/bamtools/api/SamProgramChain.h
-rw-r--r-- root/root      3336 2013-07-24 20:24 ./usr/include/bamtools/api/SamReadGroup.h
-rw-r--r-- root/root      3281 2013-07-24 20:24 ./usr/include/bamtools/api/SamReadGroupDictionary.h
-rw-r--r-- root/root      2454 2013-07-24 20:24 ./usr/include/bamtools/api/SamSequence.h
-rw-r--r-- root/root      3248 2013-07-24 20:24 ./usr/include/bamtools/api/SamSequenceDictionary.h
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/include/bamtools/api/algorithms/
-rw-r--r-- root/root     12112 2013-07-24 20:24 ./usr/include/bamtools/api/algorithms/Sort.h
-rw-r--r-- root/root       852 2014-04-27 06:53 ./usr/include/bamtools/bamtools_version.h
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/doc/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/doc/libbamtools-dev/
-rw-r--r-- root/root      1575 2014-04-12 20:50 ./usr/share/doc/libbamtools-dev/copyright
-rw-r--r-- root/root       158 2014-04-12 20:50 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz
lrwxrwxrwx root/root         0 2014-04-27 06:58 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.3.0


libbamtools2.3.0_2.3.0+dfsg-1_armhf.deb
───────────────────────────────────────

 new debian package, version 2.0.
 size 132654 bytes: control archive=1117 bytes.
     890 bytes,    21 lines      control              
     243 bytes,     3 lines      md5sums              
     135 bytes,     7 lines   *  postinst             #!/bin/sh
     132 bytes,     7 lines   *  postrm               #!/bin/sh
      35 bytes,     1 lines      shlibs               
 Package: libbamtools2.3.0
 Source: bamtools
 Version: 2.3.0+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 451
 Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4)
 Section: libs
 Priority: optional
 Homepage: https://github.com/pezmaster31/bamtools/wiki
 Description: dynnamic library for manipulating BAM (genome alignment) files
  BamTools facilitates research analysis and data management using BAM
  files.  It copes with the enormous amount of data produced by current
  sequencing technologies that is typically stored in compressed, binary
  formats that are not easily handled by the text-based parsers commonly
  used in bioinformatics research.
  .
  BamTools provides both a C++ API for BAM file support as well as a
  command-line toolkit.
  .
  This is the runtime library

drwxr-xr-x root/root         0 2014-04-27 06:58 ./
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/lib/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root    458956 2014-04-27 06:58 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.3.0
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/doc/
drwxr-xr-x root/root         0 2014-04-27 06:58 ./usr/share/doc/libbamtools2.3.0/
-rw-r--r-- root/root      1575 2014-04-12 20:50 ./usr/share/doc/libbamtools2.3.0/copyright
-rw-r--r-- root/root       158 2014-04-12 20:50 ./usr/share/doc/libbamtools2.3.0/changelog.Debian.gz


┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 65052
Build-Time: 339
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 217
Job: bamtools_2.3.0+dfsg-1
Machine Architecture: armhf
Package: bamtools
Package-Time: 613
Source-Version: 2.3.0+dfsg-1
Space: 65052
Status: successful
Version: 2.3.0+dfsg-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20140427-0659
Build needed 00:10:13, 65052k disc space