bagel →
0.0~git20150902-1 →
armhf → 2016-02-06 06:46:39
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-04
+==============================================================================+
| bagel 0.0~git20150902-1 (armhf) 06 Feb 2016 06:30 |
+==============================================================================+
Package: bagel
Version: 0.0~git20150902-1
Source Version: 0.0~git20150902-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/bagel-BwENIr/bagel-0.0~git20150902' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/bagel-BwENIr' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-806e57d9-f116-4b3f-a0d5-d8c2912773a8' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [8666 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [10.7 MB]
Fetched 19.4 MB in 21s (902 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'bagel' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debichem/unstable/bagel/
Need to get 23.0 MB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main bagel 0.0~git20150902-1 (dsc) [2186 B]
Get:2 http://172.17.0.1/private stretch-staging/main bagel 0.0~git20150902-1 (tar) [23.0 MB]
Get:3 http://172.17.0.1/private stretch-staging/main bagel 0.0~git20150902-1 (diff) [5824 B]
Fetched 23.0 MB in 2s (7861 kB/s)
Download complete and in download only mode
Check architectures
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Check dependencies
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-cRPnB5/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ Packages [526 B]
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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/764 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-cRPnB5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [764 B]
debconf: delaying package configuration, since apt-utils is not installed
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W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: autotools-dev, debhelper (>= 8), dh-autoreconf, libblas-dev, liblapack-dev, libboost-python-dev, libboost-regex-dev, libboost-serialization-dev, libboost-test-dev, libmpich-dev, libxc-dev, python-dev
Filtered Build-Depends: autotools-dev, debhelper (>= 8), dh-autoreconf, libblas-dev, liblapack-dev, libboost-python-dev, libboost-regex-dev, libboost-serialization-dev, libboost-test-dev, libmpich-dev, libxc-dev, python-dev
dpkg-deb: building package 'sbuild-build-depends-bagel-dummy' in '/<<BUILDDIR>>/resolver-qQgAjg/apt_archive/sbuild-build-depends-bagel-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ Sources [279 B]
Get:5 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ Packages [600 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
+------------------------------------------------------------------------------+
| Install bagel build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran
gfortran-5 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-common libblas-dev libblas3 libboost-python-dev
libboost-python1.58-dev libboost-python1.58.0 libboost-regex-dev
libboost-regex1.58-dev libboost-regex1.58.0 libboost-serialization-dev
libboost-serialization1.58-dev libboost-serialization1.58.0
libboost-test-dev libboost-test1.58-dev libboost-test1.58.0 libboost1.58-dev
libcroco3 libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
libgfortran-5-dev libgfortran3 libglib2.0-0 libicu-dev libicu55
liblapack-dev liblapack3 libmagic1 libmpich-dev libmpich12 libmpl-dev
libmpl1 libopa-dev libopa1 libpipeline1 libpython-dev libpython-stdlib
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
libsigsegv2 libsqlite3-0 libssl1.0.2 libtool libunistring0 libxc-dev libxc1
libxml2 m4 man-db mime-support po-debconf python python-dev python-minimal
python2.7 python2.7-dev python2.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc
libboost1.58-doc gccxml python3 libboost-atomic1.58-dev
libboost-chrono1.58-dev libboost-context1.58-dev libboost-coroutine1.58-dev
libboost-date-time1.58-dev libboost-exception1.58-dev
libboost-filesystem1.58-dev libboost-graph1.58-dev
libboost-graph-parallel1.58-dev libboost-iostreams1.58-dev
libboost-locale1.58-dev libboost-log1.58-dev libboost-math1.58-dev
libboost-mpi1.58-dev libboost-mpi-python1.58-dev
libboost-program-options1.58-dev libboost-random1.58-dev
libboost-signals1.58-dev libboost-system1.58-dev libboost-thread1.58-dev
libboost-timer1.58-dev libboost-wave1.58-dev libboost1.58-tools-dev
libmpfrc++-dev libntl-dev icu-doc libtool-doc gcj-jdk less www-browser
libmail-box-perl python-doc python-tk python2.7-doc binfmt-support
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs mpich
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base gfortran
gfortran-5 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-common libblas-dev libblas3 libboost-python-dev
libboost-python1.58-dev libboost-python1.58.0 libboost-regex-dev
libboost-regex1.58-dev libboost-regex1.58.0 libboost-serialization-dev
libboost-serialization1.58-dev libboost-serialization1.58.0
libboost-test-dev libboost-test1.58-dev libboost-test1.58.0 libboost1.58-dev
libcroco3 libexpat1 libexpat1-dev libffi6 libfile-stripnondeterminism-perl
libgfortran-5-dev libgfortran3 libglib2.0-0 libicu-dev libicu55
liblapack-dev liblapack3 libmagic1 libmpich-dev libmpich12 libmpl-dev
libmpl1 libopa-dev libopa1 libpipeline1 libpython-dev libpython-stdlib
libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib
libsigsegv2 libsqlite3-0 libssl1.0.2 libtool libunistring0 libxc-dev libxc1
libxml2 m4 man-db mime-support po-debconf python python-dev python-minimal
python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-bagel-dummy
0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
Need to get 97.6 MB/97.6 MB of archives.
After this operation, 404 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-qQgAjg/apt_archive ./ sbuild-build-depends-bagel-dummy 0.invalid.0 [838 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-7 [1083 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.6 [177 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.11-3 [380 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.11-3 [1093 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-1 [40.0 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.59 [36.4 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.1.0-7 [59.8 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-4 [18.5 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.10.2-1 [408 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2f-2 [883 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.11-3 [1836 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.11-3 [266 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-1 [19.5 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-1 [150 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.25-2 [250 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.25-2 [61.2 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.7-2 [111 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libpython2.7 armhf 2.7.11-3 [908 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libicu55 armhf 55.1-7 [7380 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.3+dfsg1-1 [800 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-9 [338 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20150820.1 [71.7 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-3 [735 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.7-2 [424 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.46.2-3 [2482 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.7-2 [1400 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.56-2 [94.9 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.015-1 [11.0 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.015-1 [6810 B]
Get:39 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160115 [827 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.2-1.11 [190 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 10 [15.2 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 5.3.1-7+rpi1 [154 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libgfortran-5-dev armhf 5.3.1-7+rpi1 [183 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf gfortran-5 armhf 5.3.1-7+rpi1 [23.7 MB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:5.3.1-1+rpi1 [1362 B]
Get:46 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 55.1-7 [163 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.0-2 [13.5 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.0-2 [110 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.0-2 [116 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libboost1.58-dev armhf 1.58.0+dfsg-4.1 [6234 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libboost-python1.58.0 armhf 1.58.0+dfsg-4.1 [123 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libexpat1-dev armhf 2.1.0-7 [114 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-dev armhf 2.7.11-3 [27.1 MB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libpython-dev armhf 2.7.11-1 [19.6 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf python2.7-dev armhf 2.7.11-3 [279 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf python-dev armhf 2.7.11-1 [1138 B]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libboost-python1.58-dev armhf 1.58.0+dfsg-4.1 [162 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libboost-python-dev armhf 1.58.0.1 [3504 B]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.58.0 armhf 1.58.0+dfsg-4.1 [227 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 55.1-7 [8339 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.58-dev armhf 1.58.0+dfsg-4.1 [312 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf libboost-regex-dev armhf 1.58.0.1 [3378 B]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libboost-serialization1.58.0 armhf 1.58.0+dfsg-4.1 [119 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libboost-serialization1.58-dev armhf 1.58.0+dfsg-4.1 [169 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libboost-serialization-dev armhf 1.58.0.1 [3346 B]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libboost-test1.58.0 armhf 1.58.0+dfsg-4.1 [180 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libboost-test1.58-dev armhf 1.58.0+dfsg-4.1 [238 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libboost-test-dev armhf 1.58.0.1 [3156 B]
Get:69 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.0-2 [1382 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.0-2 [1355 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libxc1 armhf 2.1.2-1 [254 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libxc-dev armhf 2.1.2-1 [294 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libmpl1 armhf 3.1-6 [33.1 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libopa1 armhf 3.1-6 [27.9 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libmpich12 armhf 3.1-6 [722 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libmpl-dev armhf 3.1-6 [32.2 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libopa-dev armhf 3.1-6 [26.9 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libmpich-dev armhf 3.1-6 [868 kB]
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26-2 dpkg-dev_1.18.4 g++-5_5.3.1-7+rpi1 gcc-5_5.3.1-7+rpi1 libc6-dev_2.21-7 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-7+rpi1 libstdc++6_5.3.1-7+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.2.1 autoconf_2.69-9 automake_1:1.15-3 autopoint_0.19.7-2 autotools-dev_20150820.1 base-files_9.5+rpi1 base-passwd_3.5.39 bash_4.3-14 binutils_2.26-2 bsdmainutils_9.0.6 bsdutils_1:2.27.1-3 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.24-1 cpio_2.11+dfsg-4.1 cpp_4:5.3.1-1+rpi1 cpp-5_5.3.1-7+rpi1 dash_0.5.8-2.1 debconf_1.5.58 debfoster_2.7-2 debhelper_9.20160115 debianutils_4.7 dh-autoreconf_10 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dmsetup_2:1.02.115-1 dpkg_1.18.4 dpkg-dev_1.18.4 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.6.0-2 g++_4:5.3.1-1+rpi1 g++-5_5.3.1-7+rpi1 gcc_4:5.3.1-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-10 gcc-5_5.3.1-7+rpi1 gcc-5-base_5.3.1-7+rpi1 gettext_0.19.7-2 gettext-base_0.19.7-2 gfortran_4:5.3.1-1+rpi1 gfortran-5_5.3.1-7+rpi1 gnupg_1.4.20-1 gpgv_1.4.20-1 grep_2.22-1 groff-base_1.22.3-7 gzip_1.6-4 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libbz2-1.0_1.0.6-8 libc-bin_2.21-7 libc-dev-bin_2.21-7 libc6_2.21-7 libc6-dev_2.21-7 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-7+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1 libdebconfclient0_0.201 libdevmapper1.02.1_2:1.02.115-1 libdpkg-perl_1.18.4 libdrm2_2.4.66-2 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1 libfdisk1_2.27.1-3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgc1c2_1:7.4.2-7.3 libgcc-4.9-dev_4.9.3-10 libgcc-5-dev_5.3.1-7+rpi1 libgcc1_1:5.3.1-7+rpi1 libgcrypt20_1.6.4-5 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.3.1-7+rpi1 libgfortran3_5.3.1-7+rpi1 libglib2.0-0_2.46.2-3 libgmp10_2:6.1.0+dfsg-2 libgomp1_5.3.1-7+rpi1 libgpg-error0_1.21-1 libicu-dev_55.1-7 libicu55_55.1-7 libisl15_0.16.1-1 libklibc_2.0.4-7+rpi1 libkmod2_22-1 liblapack-dev_3.6.0-2 liblapack3_3.6.0-2 liblz4-1_0.0~r131-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libmpich-dev_3.1-6 libmpich12_3.1-6 libmpl-dev_3.1-6 libmpl1_3.1-6 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libopa-dev_3.1-6 libopa1_3.1-6 libpam-modules_1.1.8-3.2 libpam-modules-bin_1.1.8-3.2 libpam-runtime_1.1.8-3.2 libpam0g_1.1.8-3.2 libpcre3_2:8.38-1 libperl5.22_5.22.1-5 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1 libprocps3_2:3.3.9-9 libprocps5_2:3.3.11-3 libpython-dev_2.7.11-1 libpython-stdlib_2.7.11-1 libpython2.7_2.7.11-3 libpython2.7-dev_2.7.11-3 libpython2.7-minimal_2.7.11-3 libpython2.7-stdlib_2.7.11-3 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2+b1 libsmartcols1_2.27.1-3 libsqlite3-0_3.10.2-1 libss2_1.42.13-1 libssl1.0.2_1.0.2f-2 libstdc++-4.9-dev_4.9.3-10 libstdc++-5-dev_5.3.1-7+rpi1 libstdc++6_5.3.1-7+rpi1 libsystemd0_228-4+b1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libtool_2.4.2-1.11 libubsan0_5.3.1-7+rpi1 libudev1_228-4+b1 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-3 libxc-dev_2.1.2-1 libxc1_2.1.2-1 libxml2_2.9.3+dfsg1-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160110+rpi1 m4_1.4.17-5 make_4.1-5 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.04-0.1 mawk_1.3.3-17 mime-support_3.59 mount_2.27.1-3 multiarch-support_2.21-7 nano_2.5.1-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.1-5 perl-base_5.22.1-5 perl-modules-5.22_5.22.1-5 po-debconf_1.0.19 procps_2:3.3.11-3 python_2.7.11-1 python-dev_2.7.11-1 python-minimal_2.7.11-1 python2.7_2.7.11-3 python2.7-dev_2.7.11-3 python2.7-minimal_2.7.11-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-bagel-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_228-4+b1 systemd-sysv_228-4+b1 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2016a-1 udev_228-4+b1 util-linux_2.27.1-3 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Jan 17 19:00:47 2016 UTC using RSA key ID B43481B0
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./bagel_0.0~git20150902-1.dsc
dpkg-source: info: extracting bagel in bagel-0.0~git20150902
dpkg-source: info: unpacking bagel_0.0~git20150902.orig.tar.gz
dpkg-source: info: unpacking bagel_0.0~git20150902-1.debian.tar.xz
dpkg-source: info: applying disable_large_integral_file.patch
dpkg-source: info: applying fix_linking_error.patch
dpkg-source: info: applying skip_failing_testcases.patch
dpkg-source: info: applying skip_mrci.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-806e57d9-f116-4b3f-a0d5-d8c2912773a8
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: source package bagel
dpkg-buildpackage: source version 0.0~git20150902-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build bagel-0.0~git20150902
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel --with autotools-dev --with autoreconf
dh_testdir -O--parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
rm -rf /<<PKGBUILDDIR>>/src/testsuite
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autotools-dev_restoreconfig -O--parallel
dh_autoreconf_clean -O--parallel
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel --with autotools-dev --with autoreconf
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_autotools-dev_updateconfig -a -O--parallel
dh_autoreconf -a -O--parallel
libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/\${ <-- HERE ([^ \t=:+{}]+)}/ at /usr/bin/automake line 3936.
configure.ac:17: installing './compile'
configure.ac:39: installing './config.guess'
configure.ac:39: installing './config.sub'
configure.ac:6: installing './install-sh'
configure.ac:6: installing './missing'
Makefile.am: installing './INSTALL'
src/Makefile.am: installing './depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
--datadir=/usr/share/bagel \
--libdir=/usr/lib/bagel \
--enable-static \
--disable-shared \
--with-boost \
--with-libxc=yes \
--with-mpi=openmpi \
--enable-smith
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libexecdir=\${prefix}/lib/bagel --disable-maintainer-mode --disable-dependency-tracking --datadir=/usr/share/bagel --libdir=/usr/lib/bagel --enable-static --disable-shared --with-boost --with-libxc=yes --with-mpi=openmpi --enable-smith
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/dist-packages
checking for python extension module directory... ${exec_prefix}/lib/python2.7/dist-packages
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
..openmpi requested..
checking for mpicc... mpicc
checking for mpicxx... mpicxx
checking whether we are using the GNU C compiler... (cached) yes
checking whether mpicc accepts -g... (cached) yes
checking for mpicc option to accept ISO C89... (cached) none needed
checking whether mpicc understands -c and -o together... (cached) yes
checking dependency style of mpicc... (cached) none
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether mpicxx accepts -g... (cached) yes
checking dependency style of mpicxx... (cached) none
checking whether mpicxx supports C++11 features by default... no
checking whether mpicxx supports C++11 features with -std=c++11... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... mpicc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... mpicxx -E
checking for ld used by mpicxx... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the mpicxx linker (/usr/bin/ld) supports shared libraries... yes
checking for mpicxx option to produce PIC... -fPIC -DPIC
checking if mpicxx PIC flag -fPIC -DPIC works... yes
checking if mpicxx static flag -static works... no
checking if mpicxx supports -c -o file.o... yes
checking if mpicxx supports -c -o file.o... (cached) yes
checking whether the mpicxx linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for boostlib >= 1.53... yes
checking for main in -lboost_serialization-gcc-mt... no
checking for main in -lboost_serialization-mt... no
checking for main in -lboost_serialization... yes
checking if boost::serialization works... yes
checking for main in -lboost_regex-gcc-mt... no
checking for main in -lboost_regex-mt... no
checking for main in -lboost_regex... yes
checking for main in -lboost_unit_test_framework-gcc-mt... no
checking for main in -lboost_unit_test_framework-mt... no
checking for main in -lboost_unit_test_framework... yes
checking xc.h usability... yes
checking xc.h presence... yes
checking for xc.h... yes
checking for main in -lxc... yes
checking mpi.h usability... yes
checking mpi.h presence... yes
checking for mpi.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/util/Makefile
config.status: creating src/util/input/Makefile
config.status: creating src/util/io/Makefile
config.status: creating src/util/parallel/Makefile
config.status: creating src/util/math/Makefile
config.status: creating src/asd/multisite/Makefile
config.status: creating src/asd/dimer/Makefile
config.status: creating src/asd/dmrg/Makefile
config.status: creating src/asd/orbital/Makefile
config.status: creating src/asd/Makefile
config.status: creating src/wfn/Makefile
config.status: creating src/grad/Makefile
config.status: creating src/integral/Makefile
config.status: creating src/scf/Makefile
config.status: creating src/df/Makefile
config.status: creating src/prop/Makefile
config.status: creating src/smith/Makefile
config.status: creating src/molecule/Makefile
config.status: creating src/pt2/Makefile
config.status: creating src/ci/Makefile
config.status: creating src/ci/ciutil/Makefile
config.status: creating src/ci/fci/Makefile
config.status: creating src/ci/zfci/Makefile
config.status: creating src/ci/ras/Makefile
config.status: creating src/multi/Makefile
config.status: creating src/multi/casscf/Makefile
config.status: creating src/multi/zcasscf/Makefile
config.status: creating src/mat1e/Makefile
config.status: creating src/opt/Makefile
config.status: creating src/alglib/Makefile
config.status: creating src/basis/Makefile
config.status: creating bagel_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--parallel
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
Making all in util
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/util'
Making all in parallel
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/util/parallel'
/bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 -DNDEBUG -std=c++11 -c -o process.lo process.cc
/bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 -DNDEBUG -std=c++11 -c -o mpi_interface.lo mpi_interface.cc
/bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 -DNDEBUG -std=c++11 -c -o accrequest.lo accrequest.cc
/bin/bash ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 -DNDEBUG -std=c++11 -c -o recvrequest.lo recvrequest.cc
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 -DNDEBUG -std=c++11 -c mpi_interface.cc -o mpi_interface.o
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 -DNDEBUG -std=c++11 -c process.cc -o process.o
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 -DNDEBUG -std=c++11 -c accrequest.cc -o accrequest.o
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -I../../.. -g -O2 -DNDEBUG -std=c++11 -c recvrequest.cc -o recvrequest.o
In file included from /usr/include/mpich/mpi.h:2175:0,
from ../../../src/util/parallel/mpi_interface.h:37,
from process.cc:29:
/usr/include/mpich/mpicxx.h:22:4: error: #error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
# error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
^
In file included from /usr/include/mpich/mpi.h:2175:0,
from ../../../src/util/parallel/mpi_interface.h:37,
from ../../../src/util/parallel/recvrequest.h:32,
from recvrequest.cc:26:
/usr/include/mpich/mpicxx.h:22:4: error: #error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
# error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
^
In file included from /usr/include/mpich/mpi.h:2175:0,
from ../../../src/util/parallel/mpi_interface.h:37,
from ../../../src/util/parallel/accrequest.h:31,
from accrequest.cc:26:
/usr/include/mpich/mpicxx.h:22:4: error: #error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
# error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
^
In file included from /usr/include/mpich/mpi.h:2175:0,
from ../../../src/util/parallel/mpi_interface.h:37,
from mpi_interface.cc:35:
/usr/include/mpich/mpicxx.h:22:4: error: #error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
# error 'Please use the same version of GCC and g++ for compiling MPICH and user MPI programs'
^
Makefile:444: recipe for target 'process.lo' failed
make[5]: *** [process.lo] Error 1
make[5]: *** Waiting for unfinished jobs....
mpi_interface.cc: In member function 'int bagel::MPI_Interface::iallreduce(size_t*, size_t)':
mpi_interface.cc:181:3: error: static assertion failed: size_t is assumed to be the same size as long long
static_assert(sizeof(size_t) == sizeof(long long), "size_t is assumed to be the same size as long long");
^
mpi_interface.cc: In member function 'void bagel::MPI_Interface::broadcast(size_t*, size_t, int) const':
mpi_interface.cc:221:3: error: static assertion failed: size_t is assumed to be the same size as long long
static_assert(sizeof(size_t) == sizeof(long long), "size_t is assumed to be the same size as long long");
^
mpi_interface.cc: In member function 'void bagel::MPI_Interface::allgather(const size_t*, size_t, size_t*, size_t) const':
mpi_interface.cc:279:3: error: static assertion failed: size_t is assumed to be the same size as long long
static_assert(sizeof(size_t) == sizeof(long long), "size_t is assumed to be the same size as long long");
^
mpi_interface.cc: In member function 'int bagel::MPI_Interface::request_send(const size_t*, size_t, int, int)':
mpi_interface.cc:345:3: error: static assertion failed: size_t is assumed to be the same size as long long
static_assert(sizeof(size_t) == sizeof(long long), "size_t is assumed to be the same size as long long");
^
Makefile:444: recipe for target 'mpi_interface.lo' failed
make[5]: *** [mpi_interface.lo] Error 1
Makefile:444: recipe for target 'accrequest.lo' failed
make[5]: *** [accrequest.lo] Error 1
Makefile:444: recipe for target 'recvrequest.lo' failed
make[5]: *** [recvrequest.lo] Error 1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/util/parallel'
Makefile:499: recipe for target 'all-recursive' failed
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/util'
Makefile:583: recipe for target 'all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
Makefile:415: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
Makefile:347: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: make -j4 returned exit code 2
debian/rules:9: recipe for target 'build-arch' failed
make: *** [build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2
--------------------------------------------------------------------------------
Build finished at 20160206-0643
Finished
--------
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 96240
Build-Time: 161
Distribution: stretch-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 533
Job: bagel_0.0~git20150902-1
Machine Architecture: armhf
Package: bagel
Package-Time: 747
Source-Version: 0.0~git20150902-1
Space: 96240
Status: attempted
Version: 0.0~git20150902-1
--------------------------------------------------------------------------------
Finished at 20160206-0643
Build needed 00:12:27, 96240k disc space