Raspbian Package Auto-Building

Build log for augustus (3.2.3+dfsg-1) on armhf

augustus3.2.3+dfsg-1armhf → 2016-12-22 04:51:34

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard

+==============================================================================+
| augustus 3.2.3+dfsg-1 (armhf)                Thu, 22 Dec 2016 04:28:00 +0000 |
+==============================================================================+

Package: augustus
Version: 3.2.3+dfsg-1
Source Version: 3.2.3+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-5815cde4-7dc1-4f88-8282-f20907804630' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9624 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.6 MB]
Fetched 21.2 MB in 26s (805 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'augustus' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/augustus.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/augustus.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 45.2 MB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main augustus 3.2.3+dfsg-1 (dsc) [2274 B]
Get:2 http://172.17.0.1/private stretch-staging/main augustus 3.2.3+dfsg-1 (tar) [45.2 MB]
Get:3 http://172.17.0.1/private stretch-staging/main augustus 3.2.3+dfsg-1 (diff) [16.0 kB]
Fetched 45.2 MB in 14s (3194 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/augustus-7w0v0l/augustus-3.2.3+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/augustus-7w0v0l' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-p5Q7sY/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-p5Q7sY/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (3454 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 36 not upgraded.
Need to get 770 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 770 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13244 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 10), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbam-dev, libhts-dev, libncurses5-dev, asciidoctor
Filtered Build-Depends: debhelper (>= 10), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbam-dev, libhts-dev, libncurses5-dev, asciidoctor
dpkg-deb: building package 'sbuild-build-depends-augustus-dummy' in '/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive/sbuild-build-depends-augustus-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-augustus-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ Sources [557 B]
Get:5 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ Packages [637 B]
Fetched 2527 B in 0s (4094 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install augustus build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  fuse2fs gnupg-l10n kbd libfuse2 manpages netbase psmisc
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  asciidoctor autoconf automake autopoint autotools-dev bsdmainutils
  ca-certificates cpp debhelper dh-autoreconf dh-strip-nondeterminism file gcc
  gettext gettext-base gfortran gfortran-6 groff-base icu-devtools
  intltool-debian libamd2 libarchive-zip-perl libbam-dev libbamtools-dev
  libbamtools2.4.0 libblas-common libblas-dev libblas3 libboost-iostreams-dev
  libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-regex1.62-dev
  libboost-regex1.62.0 libboost1.62-dev libbsd0 libbtf1 libcamd2 libccolamd2
  libcholmod3 libcolamd2 libcroco3 libcurl3-gnutls libcxsparse3 libffi6
  libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0
  libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2 libhogweed4 libhts-dev
  libhts1 libicu-dev libicu57 libk5crypto3 libkeyutils1 libklu1 libkrb5-3
  libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common
  libldl2 liblpsolve55-dev libmagic-mgc libmagic1 libmetis5 libncurses5
  libncurses5-dev libncursesw5 libnettle6 libnghttp2-14 libp11-kit0
  libpipeline1 librbio2 librtmp1 libruby2.3 libsasl2-2 libsasl2-modules-db
  libsigsegv2 libspqr2 libsqlite3-dev libssh2-1 libssl1.0.2 libssl1.1
  libsuitesparse-dev libsuitesparseconfig4 libtasn1-6 libtimedate-perl
  libtinfo-dev libtinfo5 libtool libumfpack5 libunistring0 libxml2 libyaml-0-2
  m4 man-db openssl po-debconf rake ruby ruby-did-you-mean ruby-minitest
  ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3
  rubygems-integration zlib1g zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation cpp-doc dh-make gcc-multilib manpages-dev flex bison gdb gcc-doc
  gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-6-doc
  libgfortran3-dbg libcoarrays-dev groff libbamtools-doc liblapack-doc-man
  liblapack-doc libboost1.62-doc libboost-atomic1.62-dev
  libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev
  libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev
  libboost-filesystem1.62-dev libboost-graph1.62-dev
  libboost-graph-parallel1.62-dev libboost-locale1.62-dev libboost-log1.62-dev
  libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev
  libboost-program-options1.62-dev libboost-python1.62-dev
  libboost-random1.62-dev libboost-serialization1.62-dev
  libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev
  libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev
  libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev
  gnutls-bin gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
  krb5-doc krb5-user icu-doc ncurses-doc sqlite3-doc libtool-doc gcj-jdk less
  www-browser libmail-box-perl ri ruby-dev bundler
Recommended packages:
  curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
  krb5-locales libgpm2 libsasl2-modules libltdl-dev xml-core
  libmail-sendmail-perl zip fonts-lato libjs-jquery
The following NEW packages will be installed:
  asciidoctor autoconf automake autopoint autotools-dev bsdmainutils
  ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file gettext
  gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian
  libamd2 libarchive-zip-perl libbam-dev libbamtools-dev libbamtools2.4.0
  libblas-common libblas-dev libblas3 libboost-iostreams-dev
  libboost-iostreams1.62-dev libboost-iostreams1.62.0 libboost-regex1.62-dev
  libboost-regex1.62.0 libboost1.62-dev libbsd0 libbtf1 libcamd2 libccolamd2
  libcholmod3 libcolamd2 libcroco3 libcurl3-gnutls libcxsparse3 libffi6
  libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0
  libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2 libhogweed4 libhts-dev
  libhts1 libicu-dev libicu57 libk5crypto3 libkeyutils1 libklu1 libkrb5-3
  libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common
  libldl2 liblpsolve55-dev libmagic-mgc libmagic1 libmetis5 libncurses5-dev
  libnettle6 libnghttp2-14 libp11-kit0 libpipeline1 librbio2 librtmp1
  libruby2.3 libsasl2-2 libsasl2-modules-db libsigsegv2 libspqr2
  libsqlite3-dev libssh2-1 libssl1.0.2 libssl1.1 libsuitesparse-dev
  libsuitesparseconfig4 libtasn1-6 libtimedate-perl libtinfo-dev libtool
  libumfpack5 libunistring0 libxml2 libyaml-0-2 m4 man-db openssl po-debconf
  rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
  ruby-test-unit ruby2.3 rubygems-integration
  sbuild-build-depends-augustus-dummy zlib1g-dev
The following packages will be upgraded:
  cpp gcc libncurses5 libncursesw5 libtinfo5 zlib1g
6 upgraded, 110 newly installed, 0 to remove and 30 not upgraded.
Need to get 65.1 MB/66.5 MB of archives.
After this operation, 341 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-p5Q7sY/apt_archive ./ sbuild-build-depends-augustus-dummy 0.invalid.0 [844 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libncurses5 armhf 6.0+20161126-1 [74.0 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libtinfo5 armhf 6.0+20161126-1 [288 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libncursesw5 armhf 6.0+20161126-1 [93.4 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf zlib1g armhf 1:1.2.8.dfsg-4 [81.6 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-2 [971 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0c-2 [1101 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-1 [219 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-1 [104 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-1 [63.3 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.5.7-2 [816 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.15-1 [57.9 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.15-1 [115 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.15-1 [262 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.15-1 [132 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-1 [66.7 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-1 [97.9 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libldap-common all 2.4.44+dfsg-2+rpi1 [84.5 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-2+rpi1 [195 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.1.0c-2 [703 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20161130 [203 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf rubygems-integration all 1.10 [4882 B]
Get:33 http://172.17.0.1/private stretch-staging/main armhf rake all 10.5.0-2 [49.4 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf ruby-did-you-mean all 1.0.0-2 [11.2 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf ruby-minitest all 5.9.0-1 [51.1 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf ruby-power-assert all 0.3.0-1 [7902 B]
Get:38 http://172.17.0.1/private stretch-staging/main armhf ruby-test-unit all 3.1.7-2 [69.6 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libyaml-0-2 armhf 0.1.7-2 [39.9 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libruby2.3 armhf 2.3.3-1 [2864 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf ruby2.3 armhf 2.3.3-1 [186 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf ruby armhf 1:2.3.0+4 [10.6 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf asciidoctor all 1.5.4-2 [163 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf cpp armhf 4:6.2.1-1 [18.5 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf gcc armhf 4:6.2.1-1 [5188 B]
Get:50 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.2.1-5+rpi1 [166 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.2.1-5+rpi1 [199 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.2.1-5+rpi1 [5414 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.2.1-1 [1340 B]
Get:67 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 57.1-5 [156 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libsuitesparseconfig4 armhf 1:4.5.3-2 [18.5 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libamd2 armhf 1:4.5.3-2 [30.2 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libbam-dev armhf 0.1.19-2 [109 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libboost1.62-dev armhf 1.62.0+dfsg-4 [7009 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.62.0 armhf 1.62.0+dfsg-4 [232 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 57.1-5 [15.8 MB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.62-dev armhf 1.62.0+dfsg-4 [325 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.62.0 armhf 1.62.0+dfsg-4 [48.7 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.62-dev armhf 1.62.0+dfsg-4 [57.7 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams-dev armhf 1.62.0.1 [3408 B]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libbtf1 armhf 1:4.5.3-2 [18.9 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libcamd2 armhf 1:4.5.3-2 [25.4 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libccolamd2 armhf 1:4.5.3-2 [27.0 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libcolamd2 armhf 1:4.5.3-2 [23.8 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.1-2 [1392 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libcholmod3 armhf 1:4.5.3-2 [214 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.17.0-1 [70.1 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libcurl3-gnutls armhf 7.50.1-1 [248 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libcxsparse3 armhf 1:4.5.3-2 [47.0 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.2.1+dfsg-1 [717 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libgsl-dev armhf 2.2.1+dfsg-1 [843 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libhts1 armhf 1.3.2-1+rpi1 [215 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libhts-dev armhf 1.3.2-1+rpi1 [270 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf libklu1 armhf 1:4.5.3-2 [47.4 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.1-2 [1379 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libldl2 armhf 1:4.5.3-2 [18.7 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libumfpack5 armhf 1:4.5.3-2 [127 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf librbio2 armhf 1:4.5.3-2 [27.3 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libspqr2 armhf 1:4.5.3-2 [62.6 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libsuitesparse-dev armhf 1:4.5.3-2 [566 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf liblpsolve55-dev armhf 5.5.0.15-4 [350 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libtinfo-dev armhf 6.0+20161126-1 [65.3 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libncurses5-dev armhf 6.0+20161126-1 [245 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-dev armhf 3.15.2-1 [610 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-4 [198 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libbamtools2.4.0 armhf 2.4.0+dfsg-6 [159 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libbamtools-dev armhf 2.4.0+dfsg-6 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 65.1 MB in 22s (2951 kB/s)
Selecting previously unselected package groff-base.
(Reading database ... 13244 files and directories currently installed.)
Preparing to unpack .../0-groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../1-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Preparing to unpack .../2-libncurses5_6.0+20161126-1_armhf.deb ...
Unpacking libncurses5:armhf (6.0+20161126-1) over (6.0+20160917-1) ...
Preparing to unpack .../3-libtinfo5_6.0+20161126-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.0+20161126-1) over (6.0+20160917-1) ...
Setting up libtinfo5:armhf (6.0+20161126-1) ...
(Reading database ... 13435 files and directories currently installed.)
Preparing to unpack .../libncursesw5_6.0+20161126-1_armhf.deb ...
Unpacking libncursesw5:armhf (6.0+20161126-1) over (6.0+20160917-1) ...
Setting up libncursesw5:armhf (6.0+20161126-1) ...
Selecting previously unselected package bsdmainutils.
(Reading database ... 13435 files and directories currently installed.)
Preparing to unpack .../0-bsdmainutils_9.0.12_armhf.deb ...
Unpacking bsdmainutils (9.0.12) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../1-libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Preparing to unpack .../2-zlib1g_1%3a1.2.8.dfsg-4_armhf.deb ...
Unpacking zlib1g:armhf (1:1.2.8.dfsg-4) over (1:1.2.8.dfsg-2+b1) ...
Setting up zlib1g:armhf (1:1.2.8.dfsg-4) ...
Selecting previously unselected package man-db.
(Reading database ... 13555 files and directories currently installed.)
Preparing to unpack .../000-man-db_2.7.5-2_armhf.deb ...
Unpacking man-db (2.7.5-2) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../001-libssl1.0.2_1.0.2j-4_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2j-4) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../002-libssl1.1_1.1.0c-2_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.0c-2) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../003-libmagic-mgc_1%3a5.29-1_armhf.deb ...
Unpacking libmagic-mgc (1:5.29-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../004-libmagic1_1%3a5.29-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.29-1) ...
Selecting previously unselected package file.
Preparing to unpack .../005-file_1%3a5.29-1_armhf.deb ...
Unpacking file (1:5.29-1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../006-gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libnettle6:armhf.
Preparing to unpack .../007-libnettle6_3.3-1_armhf.deb ...
Unpacking libnettle6:armhf (3.3-1) ...
Selecting previously unselected package libhogweed4:armhf.
Preparing to unpack .../008-libhogweed4_3.3-1_armhf.deb ...
Unpacking libhogweed4:armhf (3.3-1) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../009-libffi6_3.2.1-6_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-6) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../010-libp11-kit0_0.23.2-5_armhf.deb ...
Unpacking libp11-kit0:armhf (0.23.2-5) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../011-libtasn1-6_4.9-4_armhf.deb ...
Unpacking libtasn1-6:armhf (4.9-4) ...
Selecting previously unselected package libgnutls30:armhf.
Preparing to unpack .../012-libgnutls30_3.5.7-2_armhf.deb ...
Unpacking libgnutls30:armhf (3.5.7-2) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../013-libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../014-libkrb5support0_1.15-1_armhf.deb ...
Unpacking libkrb5support0:armhf (1.15-1) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../015-libk5crypto3_1.15-1_armhf.deb ...
Unpacking libk5crypto3:armhf (1.15-1) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../016-libkrb5-3_1.15-1_armhf.deb ...
Unpacking libkrb5-3:armhf (1.15-1) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../017-libgssapi-krb5-2_1.15-1_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.15-1) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../018-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-1_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-1) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../019-libsasl2-2_2.1.27~101-g0780600+dfsg-1_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-1) ...
Selecting previously unselected package libldap-common.
Preparing to unpack .../020-libldap-common_2.4.44+dfsg-2+rpi1_all.deb ...
Unpacking libldap-common (2.4.44+dfsg-2+rpi1) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../021-libldap-2.4-2_2.4.44+dfsg-2+rpi1_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.44+dfsg-2+rpi1) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../022-libicu57_57.1-5_armhf.deb ...
Unpacking libicu57:armhf (57.1-5) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../023-libxml2_2.9.4+dfsg1-2.1_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-2.1) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../024-libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../025-m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package openssl.
Preparing to unpack .../026-openssl_1.1.0c-2_armhf.deb ...
Unpacking openssl (1.1.0c-2) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../027-ca-certificates_20161130_all.deb ...
Unpacking ca-certificates (20161130) ...
Selecting previously unselected package rubygems-integration.
Preparing to unpack .../028-rubygems-integration_1.10_all.deb ...
Unpacking rubygems-integration (1.10) ...
Selecting previously unselected package rake.
Preparing to unpack .../029-rake_10.5.0-2_all.deb ...
Unpacking rake (10.5.0-2) ...
Selecting previously unselected package ruby-did-you-mean.
Preparing to unpack .../030-ruby-did-you-mean_1.0.0-2_all.deb ...
Unpacking ruby-did-you-mean (1.0.0-2) ...
Selecting previously unselected package ruby-minitest.
Preparing to unpack .../031-ruby-minitest_5.9.0-1_all.deb ...
Unpacking ruby-minitest (5.9.0-1) ...
Selecting previously unselected package ruby-net-telnet.
Preparing to unpack .../032-ruby-net-telnet_0.1.1-2_all.deb ...
Unpacking ruby-net-telnet (0.1.1-2) ...
Selecting previously unselected package ruby-power-assert.
Preparing to unpack .../033-ruby-power-assert_0.3.0-1_all.deb ...
Unpacking ruby-power-assert (0.3.0-1) ...
Selecting previously unselected package ruby-test-unit.
Preparing to unpack .../034-ruby-test-unit_3.1.7-2_all.deb ...
Unpacking ruby-test-unit (3.1.7-2) ...
Selecting previously unselected package libyaml-0-2:armhf.
Preparing to unpack .../035-libyaml-0-2_0.1.7-2_armhf.deb ...
Unpacking libyaml-0-2:armhf (0.1.7-2) ...
Selecting previously unselected package libruby2.3:armhf.
Preparing to unpack .../036-libruby2.3_2.3.3-1_armhf.deb ...
Unpacking libruby2.3:armhf (2.3.3-1) ...
Selecting previously unselected package ruby2.3.
Preparing to unpack .../037-ruby2.3_2.3.3-1_armhf.deb ...
Unpacking ruby2.3 (2.3.3-1) ...
Selecting previously unselected package ruby.
Preparing to unpack .../038-ruby_1%3a2.3.0+4_armhf.deb ...
Unpacking ruby (1:2.3.0+4) ...
Selecting previously unselected package asciidoctor.
Preparing to unpack .../039-asciidoctor_1.5.4-2_all.deb ...
Unpacking asciidoctor (1.5.4-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../040-autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../041-autotools-dev_20161112.1_all.deb ...
Unpacking autotools-dev (20161112.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../042-automake_1%3a1.15-5_all.deb ...
Unpacking automake (1:1.15-5) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../043-autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Preparing to unpack .../044-cpp_4%3a6.2.1-1_armhf.deb ...
Unpacking cpp (4:6.2.1-1) over (4:6.1.1-1) ...
Preparing to unpack .../045-gcc_4%3a6.2.1-1_armhf.deb ...
Removing old gcc doc directory.
Unpacking gcc (4:6.2.1-1) over (4:6.1.1-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../046-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../047-dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../048-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../049-libfile-stripnondeterminism-perl_0.028-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.028-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../050-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../051-dh-strip-nondeterminism_0.028-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.028-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../052-libglib2.0-0_2.50.2-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.50.2-2) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../053-libcroco3_0.6.11-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-2) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../054-libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../055-gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../056-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../057-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../058-debhelper_10.2.2_all.deb ...
Unpacking debhelper (10.2.2) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../059-libgfortran3_6.2.1-5+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (6.2.1-5+rpi1) ...
Selecting previously unselected package libgfortran-6-dev:armhf.
Preparing to unpack .../060-libgfortran-6-dev_6.2.1-5+rpi1_armhf.deb ...
Unpacking libgfortran-6-dev:armhf (6.2.1-5+rpi1) ...
Selecting previously unselected package gfortran-6.
Preparing to unpack .../061-gfortran-6_6.2.1-5+rpi1_armhf.deb ...
Unpacking gfortran-6 (6.2.1-5+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../062-gfortran_4%3a6.2.1-1_armhf.deb ...
Unpacking gfortran (4:6.2.1-1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../063-icu-devtools_57.1-5_armhf.deb ...
Unpacking icu-devtools (57.1-5) ...
Selecting previously unselected package libsuitesparseconfig4:armhf.
Preparing to unpack .../064-libsuitesparseconfig4_1%3a4.5.3-2_armhf.deb ...
Unpacking libsuitesparseconfig4:armhf (1:4.5.3-2) ...
Selecting previously unselected package libamd2:armhf.
Preparing to unpack .../065-libamd2_1%3a4.5.3-2_armhf.deb ...
Unpacking libamd2:armhf (1:4.5.3-2) ...
Selecting previously unselected package libbam-dev.
Preparing to unpack .../066-libbam-dev_0.1.19-2_armhf.deb ...
Unpacking libbam-dev (0.1.19-2) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../067-libblas-common_3.6.1-2_armhf.deb ...
Unpacking libblas-common (3.6.1-2) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../068-libblas3_3.6.1-2_armhf.deb ...
Unpacking libblas3 (3.6.1-2) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../069-libblas-dev_3.6.1-2_armhf.deb ...
Unpacking libblas-dev (3.6.1-2) ...
Selecting previously unselected package libboost1.62-dev:armhf.
Preparing to unpack .../070-libboost1.62-dev_1.62.0+dfsg-4_armhf.deb ...
Unpacking libboost1.62-dev:armhf (1.62.0+dfsg-4) ...
Selecting previously unselected package libboost-regex1.62.0:armhf.
Preparing to unpack .../071-libboost-regex1.62.0_1.62.0+dfsg-4_armhf.deb ...
Unpacking libboost-regex1.62.0:armhf (1.62.0+dfsg-4) ...
Selecting previously unselected package libicu-dev.
Preparing to unpack .../072-libicu-dev_57.1-5_armhf.deb ...
Unpacking libicu-dev (57.1-5) ...
Selecting previously unselected package libboost-regex1.62-dev:armhf.
Preparing to unpack .../073-libboost-regex1.62-dev_1.62.0+dfsg-4_armhf.deb ...
Unpacking libboost-regex1.62-dev:armhf (1.62.0+dfsg-4) ...
Selecting previously unselected package libboost-iostreams1.62.0:armhf.
Preparing to unpack .../074-libboost-iostreams1.62.0_1.62.0+dfsg-4_armhf.deb ...
Unpacking libboost-iostreams1.62.0:armhf (1.62.0+dfsg-4) ...
Selecting previously unselected package libboost-iostreams1.62-dev:armhf.
Preparing to unpack .../075-libboost-iostreams1.62-dev_1.62.0+dfsg-4_armhf.deb ...
Unpacking libboost-iostreams1.62-dev:armhf (1.62.0+dfsg-4) ...
Selecting previously unselected package libboost-iostreams-dev:armhf.
Preparing to unpack .../076-libboost-iostreams-dev_1.62.0.1_armhf.deb ...
Unpacking libboost-iostreams-dev:armhf (1.62.0.1) ...
Selecting previously unselected package libbtf1:armhf.
Preparing to unpack .../077-libbtf1_1%3a4.5.3-2_armhf.deb ...
Unpacking libbtf1:armhf (1:4.5.3-2) ...
Selecting previously unselected package libcamd2:armhf.
Preparing to unpack .../078-libcamd2_1%3a4.5.3-2_armhf.deb ...
Unpacking libcamd2:armhf (1:4.5.3-2) ...
Selecting previously unselected package libccolamd2:armhf.
Preparing to unpack .../079-libccolamd2_1%3a4.5.3-2_armhf.deb ...
Unpacking libccolamd2:armhf (1:4.5.3-2) ...
Selecting previously unselected package libcolamd2:armhf.
Preparing to unpack .../080-libcolamd2_1%3a4.5.3-2_armhf.deb ...
Unpacking libcolamd2:armhf (1:4.5.3-2) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../081-liblapack3_3.6.1-2_armhf.deb ...
Unpacking liblapack3 (3.6.1-2) ...
Selecting previously unselected package libmetis5:armhf.
Preparing to unpack .../082-libmetis5_5.1.0.dfsg-5_armhf.deb ...
Unpacking libmetis5:armhf (5.1.0.dfsg-5) ...
Selecting previously unselected package libcholmod3:armhf.
Preparing to unpack .../083-libcholmod3_1%3a4.5.3-2_armhf.deb ...
Unpacking libcholmod3:armhf (1:4.5.3-2) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../084-libnghttp2-14_1.17.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.17.0-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../085-librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../086-libssh2-1_1.7.0-1_armhf.deb ...
Unpacking libssh2-1:armhf (1.7.0-1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../087-libcurl3-gnutls_7.50.1-1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.50.1-1) ...
Selecting previously unselected package libcxsparse3:armhf.
Preparing to unpack .../088-libcxsparse3_1%3a4.5.3-2_armhf.deb ...
Unpacking libcxsparse3:armhf (1:4.5.3-2) ...
Selecting previously unselected package libgsl2:armhf.
Preparing to unpack .../089-libgsl2_2.2.1+dfsg-1_armhf.deb ...
Unpacking libgsl2:armhf (2.2.1+dfsg-1) ...
Selecting previously unselected package libgsl-dev.
Preparing to unpack .../090-libgsl-dev_2.2.1+dfsg-1_armhf.deb ...
Unpacking libgsl-dev (2.2.1+dfsg-1) ...
Selecting previously unselected package libhts1:armhf.
Preparing to unpack .../091-libhts1_1.3.2-1+rpi1_armhf.deb ...
Unpacking libhts1:armhf (1.3.2-1+rpi1) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../092-libhts-dev_1.3.2-1+rpi1_armhf.deb ...
Unpacking libhts-dev:armhf (1.3.2-1+rpi1) ...
Selecting previously unselected package libklu1:armhf.
Preparing to unpack .../093-libklu1_1%3a4.5.3-2_armhf.deb ...
Unpacking libklu1:armhf (1:4.5.3-2) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../094-liblapack-dev_3.6.1-2_armhf.deb ...
Unpacking liblapack-dev (3.6.1-2) ...
Selecting previously unselected package libldl2:armhf.
Preparing to unpack .../095-libldl2_1%3a4.5.3-2_armhf.deb ...
Unpacking libldl2:armhf (1:4.5.3-2) ...
Selecting previously unselected package libumfpack5:armhf.
Preparing to unpack .../096-libumfpack5_1%3a4.5.3-2_armhf.deb ...
Unpacking libumfpack5:armhf (1:4.5.3-2) ...
Selecting previously unselected package librbio2:armhf.
Preparing to unpack .../097-librbio2_1%3a4.5.3-2_armhf.deb ...
Unpacking librbio2:armhf (1:4.5.3-2) ...
Selecting previously unselected package libspqr2:armhf.
Preparing to unpack .../098-libspqr2_1%3a4.5.3-2_armhf.deb ...
Unpacking libspqr2:armhf (1:4.5.3-2) ...
Selecting previously unselected package libsuitesparse-dev:armhf.
Preparing to unpack .../099-libsuitesparse-dev_1%3a4.5.3-2_armhf.deb ...
Unpacking libsuitesparse-dev:armhf (1:4.5.3-2) ...
Selecting previously unselected package liblpsolve55-dev.
Preparing to unpack .../100-liblpsolve55-dev_5.5.0.15-4_armhf.deb ...
Unpacking liblpsolve55-dev (5.5.0.15-4) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../101-libtinfo-dev_6.0+20161126-1_armhf.deb ...
Unpacking libtinfo-dev:armhf (6.0+20161126-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../102-libncurses5-dev_6.0+20161126-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.0+20161126-1) ...
Selecting previously unselected package libsqlite3-dev:armhf.
Preparing to unpack .../103-libsqlite3-dev_3.15.2-1_armhf.deb ...
Unpacking libsqlite3-dev:armhf (3.15.2-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../104-zlib1g-dev_1%3a1.2.8.dfsg-4_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-4) ...
Selecting previously unselected package libbamtools2.4.0.
Preparing to unpack .../105-libbamtools2.4.0_2.4.0+dfsg-6_armhf.deb ...
Unpacking libbamtools2.4.0 (2.4.0+dfsg-6) ...
Selecting previously unselected package libbamtools-dev.
Preparing to unpack .../106-libbamtools-dev_2.4.0+dfsg-6_armhf.deb ...
Unpacking libbamtools-dev (2.4.0+dfsg-6) ...
Selecting previously unselected package sbuild-build-depends-augustus-dummy.
Preparing to unpack .../107-sbuild-build-depends-augustus-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-augustus-dummy (0.invalid.0) ...
Setting up libncurses5:armhf (6.0+20161126-1) ...
Setting up cpp (4:6.2.1-1) ...
Setting up libnettle6:armhf (3.3-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libnghttp2-14:armhf (1.17.0-1) ...
Setting up libboost1.62-dev:armhf (1.62.0+dfsg-4) ...
Setting up libsqlite3-dev:armhf (3.15.2-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up libldap-common (2.4.44+dfsg-2+rpi1) ...
Setting up libbamtools2.4.0 (2.4.0+dfsg-6) ...
Setting up libblas-common (3.6.1-2) ...
Setting up libgfortran3:armhf (6.2.1-5+rpi1) ...
Setting up groff-base (1.22.3-8) ...
Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-1) ...
Setting up libgfortran-6-dev:armhf (6.2.1-5+rpi1) ...
Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-1) ...
Setting up libtinfo-dev:armhf (6.0+20161126-1) ...
Setting up libsuitesparseconfig4:armhf (1:4.5.3-2) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up libgsl2:armhf (2.2.1+dfsg-1) ...
Setting up gcc (4:6.2.1-1) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ...
Setting up libtasn1-6:armhf (4.9-4) ...
Setting up libmagic-mgc (1:5.29-1) ...
Setting up libmagic1:armhf (1:5.29-1) ...
Setting up libhogweed4:armhf (3.3-1) ...
Setting up libboost-iostreams1.62.0:armhf (1.62.0+dfsg-4) ...
Setting up libncurses5-dev:armhf (6.0+20161126-1) ...
Setting up libssl1.0.2:armhf (1.0.2j-4) ...
Setting up libamd2:armhf (1:4.5.3-2) ...
Setting up ruby-did-you-mean (1.0.0-2) ...
Setting up libyaml-0-2:armhf (0.1.7-2) ...
Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libssh2-1:armhf (1.7.0-1) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libssl1.1:armhf (1.1.0c-2) ...
Setting up libmetis5:armhf (5.1.0.dfsg-5) ...
Setting up openssl (1.1.0c-2) ...
Setting up ruby-net-telnet (0.1.1-2) ...
Setting up libbam-dev (0.1.19-2) ...
Setting up libcolamd2:armhf (1:4.5.3-2) ...
Setting up libccolamd2:armhf (1:4.5.3-2) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up icu-devtools (57.1-5) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up ruby-minitest (5.9.0-1) ...
Setting up ca-certificates (20161130) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Setting up autopoint (0.19.8.1-1) ...
Setting up ruby-power-assert (0.3.0-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up libbtf1:armhf (1:4.5.3-2) ...
Setting up libldl2:armhf (1:4.5.3-2) ...
Setting up libcxsparse3:armhf (1:4.5.3-2) ...
Setting up gfortran-6 (6.2.1-5+rpi1) ...
Setting up ruby-test-unit (3.1.7-2) ...
Setting up libgsl-dev (2.2.1+dfsg-1) ...
Setting up liblapack3 (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libglib2.0-0:armhf (2.50.2-2) ...
No schema files found: doing nothing.
Setting up librbio2:armhf (1:4.5.3-2) ...
Setting up libboost-regex1.62.0:armhf (1.62.0+dfsg-4) ...
Setting up libcamd2:armhf (1:4.5.3-2) ...
Setting up libbamtools-dev (2.4.0+dfsg-6) ...
Setting up libklu1:armhf (1:4.5.3-2) ...
Setting up autoconf (2.69-10) ...
Setting up libicu-dev (57.1-5) ...
Setting up file (1:5.29-1) ...
Setting up libkrb5support0:armhf (1.15-1) ...
Setting up libcholmod3:armhf (1:4.5.3-2) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up libp11-kit0:armhf (0.23.2-5) ...
Setting up automake (1:1.15-5) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up rubygems-integration (1.10) ...
Setting up man-db (2.7.5-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libspqr2:armhf (1:4.5.3-2) ...
Setting up libtool (2.4.6-2) ...
Setting up gfortran (4:6.2.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libk5crypto3:armhf (1.15-1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libboost-regex1.62-dev:armhf (1.62.0+dfsg-4) ...
Setting up libboost-iostreams1.62-dev:armhf (1.62.0+dfsg-4) ...
Setting up libgnutls30:armhf (3.5.7-2) ...
Setting up libumfpack5:armhf (1:4.5.3-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libldap-2.4-2:armhf (2.4.44+dfsg-2+rpi1) ...
Setting up libboost-iostreams-dev:armhf (1.62.0.1) ...
Setting up libkrb5-3:armhf (1.15-1) ...
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up po-debconf (1.0.20) ...
Setting up libgssapi-krb5-2:armhf (1.15-1) ...
Setting up libsuitesparse-dev:armhf (1:4.5.3-2) ...
Setting up libcurl3-gnutls:armhf (7.50.1-1) ...
Setting up liblpsolve55-dev (5.5.0.15-4) ...
Setting up libhts1:armhf (1.3.2-1+rpi1) ...
Setting up libhts-dev:armhf (1.3.2-1+rpi1) ...
Setting up dh-autoreconf (12) ...
Setting up rake (10.5.0-2) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up libruby2.3:armhf (2.3.3-1) ...
Setting up debhelper (10.2.2) ...
Setting up ruby2.3 (2.3.3-1) ...
Setting up ruby (1:2.3.0+4) ...
Setting up asciidoctor (1.5.4-2) ...
Setting up sbuild-build-depends-augustus-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
Processing triggers for ca-certificates (20161130) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161127-1 dpkg-dev_1.18.15 g++-6_6.2.1-5+rpi1 gcc-6_6.2.1-5+rpi1 libc6-dev_2.24-7+rpi1 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.4~beta1 asciidoctor_1.5.4-2 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.7+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161127-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 ca-certificates_20161130 coreutils_8.25-2 cpio_2.11+dfsg-6 cpp_4:6.2.1-1 cpp-6_6.2.1-5+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8.1 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-1 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.1-5+rpi1 gcc_4:6.2.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.1-5+rpi1 gcc-6-base_6.2.1-5+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.2.1-1 gfortran-6_6.2.1-5+rpi1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-5 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 kbd_2.0.3-2 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libamd2_1:4.5.3-2 libapparmor1_2.10.95-6 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan3_6.2.1-5+rpi1 libassuan0_2.4.3-2 libatomic1_6.2.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libbam-dev_0.1.19-2 libbamtools-dev_2.4.0+dfsg-6 libbamtools2.4.0_2.4.0+dfsg-6 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.29-1 libboost-iostreams-dev_1.62.0.1 libboost-iostreams1.62-dev_1.62.0+dfsg-4 libboost-iostreams1.62.0_1.62.0+dfsg-4 libboost-regex1.62-dev_1.62.0+dfsg-4 libboost-regex1.62.0_1.62.0+dfsg-4 libboost1.62-dev_1.62.0+dfsg-4 libbsd0_0.8.3-1 libbtf1_1:4.5.3-2 libbz2-1.0_1.0.6-8 libc-bin_2.24-7+rpi1 libc-dev-bin_2.24-7+rpi1 libc6_2.24-7+rpi1 libc6-dev_2.24-7+rpi1 libcamd2_1:4.5.3-2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.1-5+rpi1 libccolamd2_1:4.5.3-2 libcholmod3_1:4.5.3-2 libcolamd2_1:4.5.3-2 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 libcurl3-gnutls_7.50.1-1 libcxsparse3_1:4.5.3-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.14-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.136-1 libdpkg-perl_1.18.15 libdrm2_2.4.74-1 libfakeroot_1.21-2 libfdisk1_2.29-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.2.1-5+rpi1 libgcc1_1:6.2.1-5+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.1-5+rpi1 libgfortran3_6.2.1-5+rpi1 libglib2.0-0_2.50.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.7-2 libgomp1_6.2.1-5+rpi1 libgpg-error0_1.25-1 libgsl-dev_2.2.1+dfsg-1 libgsl2_2.2.1+dfsg-1 libgssapi-krb5-2_1.15-1 libhogweed4_3.3-1 libhts-dev_1.3.2-1+rpi1 libhts1_1.3.2-1+rpi1 libicu-dev_57.1-5 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libklu1_1:4.5.3-2 libkmod2_23-1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 liblapack-dev_3.6.1-2 liblapack3_3.6.1-2 libldap-2.4-2_2.4.44+dfsg-2+rpi1 libldap-common_2.4.44+dfsg-2+rpi1 libldl2_1:4.5.3-2 liblpsolve55-dev_5.5.0.15-4 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-1 libmagic1_1:5.29-1 libmetis5_5.1.0.dfsg-5 libmount1_2.29-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20161126-1 libncurses5-dev_6.0+20161126-1 libncursesw5_6.0+20161126-1 libnettle6_3.3-1 libnghttp2-14_1.17.0-1 libnpth0_1.3-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libprocps6_2:3.3.12-3 librbio2_1:4.5.3-2 libreadline7_7.0-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libruby2.3_2.3.3-1 libsasl2-2_2.1.27~101-g0780600+dfsg-1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libsmartcols1_2.29-1 libspqr2_1:4.5.3-2 libsqlite3-0_3.15.2-1 libsqlite3-dev_3.15.2-1 libss2_1.43.3-1 libssh2-1_1.7.0-1 libssl1.0.2_1.0.2j-4 libssl1.1_1.1.0c-2 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 libsuitesparse-dev_1:4.5.3-2 libsuitesparseconfig4_1:4.5.3-2 libsystemd0_232-6 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20161126-1 libtinfo5_6.0+20161126-1 libtool_2.4.6-2 libubsan0_6.2.1-5+rpi1 libudev1_232-6 libumfpack5_1:4.5.3-2 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1 libxml2_2.9.4+dfsg1-2.1 libyaml-0-2_0.1.7-2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.3 lsb-base_9.20161125+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-2 manpages_4.08-1 mawk_1.3.3-17 mount_2.29-1 multiarch-support_2.24-7+rpi1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 netbase_5.3 openssl_1.1.0c-2 passwd_1:4.2-3.3 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 psmisc_22.21-2.1 rake_10.5.0-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 ruby_1:2.3.0+4 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.9.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.1.7-2 ruby2.3_2.3.3-1 rubygems-integration_1.10 sbuild-build-depends-augustus-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 udev_232-6 util-linux_2.29-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4 zlib1g-dev_1:1.2.8.dfsg-4

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Dec 11 11:08:13 2016 UTC
gpgv:                using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./augustus_3.2.3+dfsg-1.dsc
dpkg-source: info: extracting augustus in /<<BUILDDIR>>/augustus-3.2.3+dfsg
dpkg-source: info: unpacking augustus_3.2.3+dfsg.orig.tar.xz
dpkg-source: info: unpacking augustus_3.2.3+dfsg-1.debian.tar.xz
dpkg-source: info: applying search_config_path
dpkg-source: info: applying set_installdir
dpkg-source: info: applying keep_cflags
dpkg-source: info: applying buildflags.patch
dpkg-source: info: applying spelling.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-5815cde4-7dc1-4f88-8282-f20907804630
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package augustus
dpkg-buildpackage: info: source version 3.2.3+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build augustus-3.2.3+dfsg
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --parallel
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
/usr/bin/make -C auxprogs/bam2hints clean
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/bam2hints'
rm -f bam2hints.o bam2hints ../../bin/bam2hints
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/bam2hints'
/usr/bin/make -C auxprogs/homGeneMapping/src clean
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/homGeneMapping/src'
rm -f homGeneMapping gene.o genome.o
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/homGeneMapping/src'
/usr/bin/make -C auxprogs/joingenes clean
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/joingenes'
rm -rf *o joingenes; rm -rf ../../bin/joingenes
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/joingenes'
rm -rf bin
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
   dh_autoreconf_clean
   dh_clean
 debian/rules build-arch
dh build-arch --parallel
   dh_testdir -a -O--parallel
   dh_update_autotools_config -a -O--parallel
   dh_autoreconf -a -O--parallel
   dh_auto_configure -a -O--parallel
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
mkdir -p bin
/usr/bin/make -C auxprogs/bam2hints
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/bam2hints'
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2  -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools 
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2  -Wl,-z,relro -Wl,-z,now -o bam2hints bam2hints.o -lbamtools -lz 
cp bam2hints ../../bin
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/bam2hints'
/usr/bin/make -C auxprogs/homGeneMapping/src
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/homGeneMapping/src'
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -Wl,-z,relro -Wl,-z,now -o gene.o gene.cc -I../include
g++ -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -Wl,-z,relro -Wl,-z,now -o genome.o genome.cc -I../include
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -o homGeneMapping main.cc gene.o genome.o -I../include  
cp homGeneMapping ../../../bin/homGeneMapping
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/homGeneMapping/src'
/usr/bin/make -C auxprogs/checkTargetSortedness
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/checkTargetSortedness'
gcc -g -Wall -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -c checkTargetSortedness.c -o checkTargetSortedness.o -I/usr/include/samtools -I.
gcc -g -Wall -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security	-Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now checkTargetSortedness.o -o checkTargetSortedness -lbam -lcurses -lm -lz -lpthread 
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/checkTargetSortedness'
/usr/bin/make -C auxprogs/joingenes
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/joingenes'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x joingenes.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x jg_transcript.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x jg_ios.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x joingenes.o jg_transcript.o jg_ios.o -o joingenes -Wl,-z,relro -Wl,-z,now
cp joingenes ../../bin/
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/joingenes'
dh_auto_build
	make -j4
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
mkdir -p bin
cd src && make
make[3]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/src'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o genbank.o genbank.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o properties.o properties.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o pp_profile.o pp_profile.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o pp_hitseq.o pp_hitseq.cc -I../include
pp_profile.cc:91:10: warning: 'std::ostream& PP::operator<<(std::ostream&, const PP::Column&)' has not been declared within PP
 ostream& PP::operator<<(ostream& strm, const Column& c) {
          ^~
In file included from pp_profile.cc:14:0:
../include/pp_profile.hh:274:18: note: only here as a friend
  friend ostream& operator<<(ostream&, const Column&);
                  ^~~~~~~~
pp_profile.cc:97:10: warning: 'std::istream& PP::operator>>(std::istream&, PP::Column&)' has not been declared within PP
 istream& PP::operator>>(istream& strm, Column& c) {
          ^~
In file included from pp_profile.cc:14:0:
../include/pp_profile.hh:275:18: note: only here as a friend
  friend istream& operator>>(istream&, Column& c);
                  ^~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o pp_scoring.o pp_scoring.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o statemodel.o statemodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o namgene.o namgene.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o types.o types.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o gene.o gene.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o evaluation.o evaluation.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o motif.o motif.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o geneticcode.o geneticcode.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o hints.o hints.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o extrinsicinfo.o extrinsicinfo.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o projectio.o projectio.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o intronmodel.o intronmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o exonmodel.o exonmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o igenicmodel.o igenicmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o utrmodel.o utrmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o merkmal.o merkmal.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o vitmatrix.o vitmatrix.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o lldouble.o lldouble.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o mea.o mea.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o graph.o graph.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o meaPath.o meaPath.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o exoncand.o exoncand.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o randseqaccess.o randseqaccess.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o fasta.o fasta.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o ncmodel.o ncmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o commontrain.o commontrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o igenictrain.o igenictrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o introntrain.o introntrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o exontrain.o exontrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o utrtrain.o utrtrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o dummy.o dummy.cc -I../include
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o prepareAlign pp_prepare_align.cc
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include
echo "-Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security " > cxxflags
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o -I../include 
cp prepareAlign ../bin/
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include 
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o -I../include 
cp augustus ../bin/
cp etraining ../bin/
cp fastBlockSearch ../bin/
make[3]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/src'
cd auxprogs && make
make[3]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs'
cd bam2hints; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/bam2hints'
make[4]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[4]: 'bam2hints' is up to date.
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/bam2hints'
cd compileSpliceCands; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/compileSpliceCands'
make[4]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
gcc -Wall -pedantic -ansi -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c compileSpliceCands.c
compileSpliceCands.c: In function 'getChromosome':
compileSpliceCands.c:226:2: warning: this decimal constant is unsigned only in ISO C90
  s = malloc(3500000000);
  ^
compileSpliceCands.c: In function 'parseList':
compileSpliceCands.c:350:32: warning: 'left' may be used uninitialized in this function [-Wmaybe-uninitialized]
        findPossibleSpliceSites(left->name,actualChromosome,left->startPos,left->endPos,right->startPos,right->endPos,left->strand,right->strand);
                                ^~~~
compileSpliceCands.c: In function 'main':
compileSpliceCands.c:563:3: warning: 'chromosomeLength' may be used uninitialized in this function [-Wmaybe-uninitialized]
   parseList(&L,actualChromosome,chromosomeLength,oldname,maxSpliceSiteDiff,threshold,maxIntronLength); 
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c -o list.o list.c
gcc -o compileSpliceCands compileSpliceCands.o list.o -Wl,-z,relro -Wl,-z,now;
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/compileSpliceCands'
cd filterBam; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/filterBam'
make[4]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
(cd src;make)
make[5]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/filterBam/src'
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c filterBam.cc -o filterBam.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/MatePairs.cc -o MatePairs.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/getReferenceName.cc -o getReferenceName.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/initOptions.cc -o initOptions.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/SingleAlignment.cc -o SingleAlignment.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/printElapsedTime.cc -o printElapsedTime.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/sumMandIOperations.cc -o sumMandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/sumDandIOperations.cc -o sumDandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/PairednessCoverage.cc -o PairednessCoverage.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now  -std=c++0x -Wl,-z,relro -Wl,-z,now filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o -o filterBam -lbamtools -lz 
filterBam compiled with BAMTOOLS=/usr/include/bamtools
cp filterBam ../../../bin/filterBam
make[5]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/filterBam/src'
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/filterBam'
cd homGeneMapping; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/homGeneMapping'
make[4]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
(cd src; make)
make[5]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/homGeneMapping/src'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/homGeneMapping/src'
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/homGeneMapping'
cd joingenes; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/joingenes'
make[4]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs/joingenes'
make[3]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg/auxprogs'
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
asciidoctor -a docdate='' -b manpage debian/mansrc/*adoc
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
   dh_auto_test -a -O--parallel
 fakeroot debian/rules binary-arch
dh binary-arch --parallel
   dh_testroot -a -O--parallel
   dh_prep -a -O--parallel
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
mkdir -p         debian/augustus/usr/bin
install bin/*    debian/augustus/usr/bin
install auxprogs/checkTargetSortedness/checkTargetSortedness \
                 debian/augustus/usr/bin
install auxprogs/homGeneMapping/src/homGeneMapping \
                 debian/augustus/usr/bin
install auxprogs/joingenes/joingenes \
                 debian/augustus/usr/bin
mkdir -p         debian/augustus/usr/share/augustus
cp -r scripts    debian/augustus/usr/share/augustus
chmod -R -x      debian/augustus/usr/share/augustus/scripts/*
chmod +x         debian/augustus/usr/share/augustus/scripts/checkUTR \
                 debian/augustus/usr/share/augustus/scripts/*.pl
mkdir -p         debian/augustus-doc/usr/share/doc/augustus
cp README*       debian/augustus-doc/usr/share/doc/augustus
cp docs/*.txt    debian/augustus-doc/usr/share/doc/augustus
cp -r docs/tutorial \
                 debian/augustus-doc/usr/share/doc/augustus
mkdir -p         debian/augustus-data/usr/share/augustus
cp -r config     debian/augustus-data/usr/share/augustus
find             debian/augustus-data/usr/share/augustus \
  -type f -exec chmod -x {} \;
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
   dh_installdocs -a -O--parallel
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
dh_installchangelogs -k HISTORY.TXT
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
   dh_installman -a -O--parallel
   dh_perl -a -O--parallel
   dh_link -a -O--parallel
   dh_strip_nondeterminism -a -O--parallel
   debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
dh_compress -Xtutorial
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.3+dfsg'
   dh_fixperms -a -O--parallel
   dh_strip -a -O--parallel
   dh_makeshlibs -a -O--parallel
   dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: debian/augustus/usr/bin/etraining contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/augustus/usr/bin/homGeneMapping contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/augustus/usr/bin/fastBlockSearch contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/augustus/usr/bin/prepareAlign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/augustus/usr/bin/filterBam contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/augustus/usr/bin/augustus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/augustus/usr/bin/bam2hints contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/augustus/usr/bin/joingenes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/augustus/usr/bin/checkTargetSortedness was not linked against libncurses.so.5 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/augustus/usr/bin/checkTargetSortedness was not linked against libtinfo.so.5 (it uses none of the library's symbols)
   dh_installdeb -a -O--parallel
   dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package augustus: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package augustus: unused substitution variable ${perl:Depends}
   dh_md5sums -a -O--parallel
   dh_builddeb -a -O--parallel
dpkg-deb: building package 'augustus-dbgsym' in '../augustus-dbgsym_3.2.3+dfsg-1_armhf.deb'.
dpkg-deb: building package 'augustus' in '../augustus_3.2.3+dfsg-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../augustus_3.2.3+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build augustus-3.2.3+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2016-12-22T04:51:21Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


augustus_3.2.3+dfsg-1_armhf.changes:
------------------------------------

Format: 1.8
Date: Sun, 11 Dec 2016 10:25:18 +0000
Source: augustus
Binary: augustus augustus-data augustus-doc
Architecture: armhf
Version: 3.2.3+dfsg-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
 augustus   - gene prediction in eukaryotic genomes
 augustus-data - data files for AUGUSTUS
 augustus-doc - documentation files for AUGUSTUS
Changes:
 augustus (3.2.3+dfsg-1) unstable; urgency=medium
 .
   * New upstream version.
   * Refresh and drop patches.
   * Adjust excluded files due to upstream source changes.
   * Drop unused overrides.
   * Use man pages provided by upstream.
   * Fix spelling errors.
   * Use debhelper 10.
Checksums-Sha1:
 369e8ccab01d9e82d150d5d7ba09d9f4233ac74d 14596376 augustus-dbgsym_3.2.3+dfsg-1_armhf.deb
 eb8bebf81238ec63be42e7da3ef007a1f2366c75 6892 augustus_3.2.3+dfsg-1_armhf.buildinfo
 935b483f3c6b41d35159f405bfaf4078c9e8159b 883750 augustus_3.2.3+dfsg-1_armhf.deb
Checksums-Sha256:
 2cd59344458a596e35cffd2d3cdb5d501b706d98353dd02e711bf4f04a513dfe 14596376 augustus-dbgsym_3.2.3+dfsg-1_armhf.deb
 de9a9766901469c19d5651113227fbfcab605496bc13aeb805369740b3694736 6892 augustus_3.2.3+dfsg-1_armhf.buildinfo
 4bb1bd403db5304aec84bb9818e03146d1cc03ad20af61921b53b18f61c91322 883750 augustus_3.2.3+dfsg-1_armhf.deb
Files:
 b737522e4b074fb5875ae745bd565565 14596376 debug extra augustus-dbgsym_3.2.3+dfsg-1_armhf.deb
 49638222aaeb86428535f82dc5ef1f95 6892 science optional augustus_3.2.3+dfsg-1_armhf.buildinfo
 0f0ab60cb9a3f7222d6471199e80b4b6 883750 science optional augustus_3.2.3+dfsg-1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


augustus-dbgsym_3.2.3+dfsg-1_armhf.deb
--------------------------------------

 new debian package, version 2.0.
 size 14596376 bytes: control archive=940 bytes.
     763 bytes,    13 lines      control              
     954 bytes,     9 lines      md5sums              
 Package: augustus-dbgsym
 Source: augustus
 Version: 3.2.3+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 14785
 Depends: augustus (= 3.2.3+dfsg-1)
 Section: debug
 Priority: extra
 Homepage: http://bioinf.uni-greifswald.de/augustus/
 Description: Debug symbols for augustus
 Auto-Built-Package: debug-symbols
 Build-Ids: 3dffa09d7d54d3f877784c14152a1c6cc11966a8 4a127be55facee8617b5eacdfffd143c78caeb1d 4fdb216cf1889a2d0cb4dba828d2f11743e36775 8a3e570ad97cd0b494b5ae276b673b3c7cb0f244 9a0ce6af320f995410c6249ab28252afdde5f48d b5668f346674e1181a0b4a7e701db98b302bb5dd bb321deb4e869f3127509755a3a72200b192ca6b f34ab31151fe084744311839552876527e9b4af6 f8a7550e397a7cb4435c834adfe12856a7480c45

drwxr-xr-x root/root         0 2016-12-11 10:25 ./
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/3d/
-rw-r--r-- root/root   5654024 2016-12-11 10:25 ./usr/lib/debug/.build-id/3d/ffa09d7d54d3f877784c14152a1c6cc11966a8.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/4a/
-rw-r--r-- root/root    649276 2016-12-11 10:25 ./usr/lib/debug/.build-id/4a/127be55facee8617b5eacdfffd143c78caeb1d.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/4f/
-rw-r--r-- root/root    108884 2016-12-11 10:25 ./usr/lib/debug/.build-id/4f/db216cf1889a2d0cb4dba828d2f11743e36775.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/8a/
-rw-r--r-- root/root    606772 2016-12-11 10:25 ./usr/lib/debug/.build-id/8a/3e570ad97cd0b494b5ae276b673b3c7cb0f244.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/9a/
-rw-r--r-- root/root    138132 2016-12-11 10:25 ./usr/lib/debug/.build-id/9a/0ce6af320f995410c6249ab28252afdde5f48d.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/b5/
-rw-r--r-- root/root   6339860 2016-12-11 10:25 ./usr/lib/debug/.build-id/b5/668f346674e1181a0b4a7e701db98b302bb5dd.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/bb/
-rw-r--r-- root/root     18708 2016-12-11 10:25 ./usr/lib/debug/.build-id/bb/321deb4e869f3127509755a3a72200b192ca6b.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/f3/
-rw-r--r-- root/root    948700 2016-12-11 10:25 ./usr/lib/debug/.build-id/f3/4ab31151fe084744311839552876527e9b4af6.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/lib/debug/.build-id/f8/
-rw-r--r-- root/root    652160 2016-12-11 10:25 ./usr/lib/debug/.build-id/f8/a7550e397a7cb4435c834adfe12856a7480c45.debug
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/doc/
lrwxrwxrwx root/root         0 2016-12-11 10:25 ./usr/share/doc/augustus-dbgsym -> augustus


augustus_3.2.3+dfsg-1_armhf.deb
-------------------------------

 new debian package, version 2.0.
 size 883750 bytes: control archive=4369 bytes.
    1245 bytes,    21 lines      control              
    8522 bytes,   113 lines      md5sums              
 Package: augustus
 Version: 3.2.3+dfsg-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3722
 Depends: libbamtools2.4.0, libc6 (>= 2.15), libgcc1 (>= 1:4.0), libncurses5 (>= 6), libstdc++6 (>= 6), libtinfo5 (>= 6), zlib1g (>= 1:1.2.3.3), libgsl2, augustus-data, libhts1
 Section: science
 Priority: optional
 Homepage: http://bioinf.uni-greifswald.de/augustus/
 Description: gene prediction in eukaryotic genomes
  AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
  that is based on a generalized hidden Markov model (HMM), a probabilistic
  model of a sequence and its gene structure. After learning gene structures
  from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
  sequence and annotates it with the regions of identified genes. External hints,
  e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
  and improve the gene finding process. The result is the set of most likely gene
  structures that comply with all given user constraints, if such gene
  structures exist.
  AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
  to train custom models using annotated genomes.

drwxr-xr-x root/root         0 2016-12-11 10:25 ./
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/bin/
-rwxr-xr-x root/root   1085628 2016-12-11 10:25 ./usr/bin/augustus
-rwxr-xr-x root/root     26532 2016-12-11 10:25 ./usr/bin/bam2hints
-rwxr-xr-x root/root     88548 2016-12-11 10:25 ./usr/bin/checkTargetSortedness
-rwxr-xr-x root/root   1224884 2016-12-11 10:25 ./usr/bin/etraining
-rwxr-xr-x root/root    245508 2016-12-11 10:25 ./usr/bin/fastBlockSearch
-rwxr-xr-x root/root    149020 2016-12-11 10:25 ./usr/bin/filterBam
-rwxr-xr-x root/root    108676 2016-12-11 10:25 ./usr/bin/homGeneMapping
-rwxr-xr-x root/root    120320 2016-12-11 10:25 ./usr/bin/joingenes
-rwxr-xr-x root/root     26132 2016-12-11 10:25 ./usr/bin/prepareAlign
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/augustus/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/augustus/scripts/
-rw-r--r-- root/root     12539 2016-12-11 10:25 ./usr/share/augustus/scripts/README.autoAug
-rw-r--r-- root/root     12247 2016-12-11 10:25 ./usr/share/augustus/scripts/SplicedAlignment.pm
-rwxr-xr-x root/root      3022 2016-12-11 10:25 ./usr/share/augustus/scripts/augustus2browser.pl
-rwxr-xr-x root/root       389 2016-12-11 10:25 ./usr/share/augustus/scripts/augustus2gbrowse.pl
-rwxr-xr-x root/root     48984 2016-12-11 10:25 ./usr/share/augustus/scripts/autoAug.pl
-rwxr-xr-x root/root     20477 2016-12-11 10:25 ./usr/share/augustus/scripts/autoAugPred.pl
-rwxr-xr-x root/root     44143 2016-12-11 10:25 ./usr/share/augustus/scripts/autoAugTrain.pl
-rw-r--r-- root/root       195 2016-12-11 10:25 ./usr/share/augustus/scripts/autoRun.pathInfo
-rwxr-xr-x root/root      3370 2016-12-11 10:25 ./usr/share/augustus/scripts/bedgraph2wig.pl
-rwxr-xr-x root/root      4442 2016-12-11 10:25 ./usr/share/augustus/scripts/blat2gbrowse.pl
-rwxr-xr-x root/root     30278 2016-12-11 10:25 ./usr/share/augustus/scripts/blat2hints.pl
-rwxr-xr-x root/root     11310 2016-12-11 10:25 ./usr/share/augustus/scripts/block2prfl.pl
-rwxr-xr-x root/root      2233 2016-12-11 10:25 ./usr/share/augustus/scripts/cegma2gff.pl
-rwxr-xr-x root/root      3843 2016-12-11 10:25 ./usr/share/augustus/scripts/checkParamArchive.pl
-rwxr-xr-x root/root      1151 2016-12-11 10:25 ./usr/share/augustus/scripts/checkUTR
-rwxr-xr-x root/root       535 2016-12-11 10:25 ./usr/share/augustus/scripts/cleanDOSfasta.pl
-rwxr-xr-x root/root      7558 2016-12-11 10:25 ./usr/share/augustus/scripts/clusterAndSplitGenes.pl
-rwxr-xr-x root/root      4879 2016-12-11 10:25 ./usr/share/augustus/scripts/createAugustusJoblist.pl
-rwxr-xr-x root/root      3233 2016-12-11 10:25 ./usr/share/augustus/scripts/del_from_prfl.pl
-rwxr-xr-x root/root      9675 2016-12-11 10:25 ./usr/share/augustus/scripts/evalCGP.pl
-rwxr-xr-x root/root      3043 2016-12-11 10:25 ./usr/share/augustus/scripts/exonerate2hints.pl
-rwxr-xr-x root/root      1301 2016-12-11 10:25 ./usr/share/augustus/scripts/exoniphyDb2hints.pl
-rwxr-xr-x root/root       507 2016-12-11 10:25 ./usr/share/augustus/scripts/extractTranscriptEnds.pl
-rwxr-xr-x root/root       435 2016-12-11 10:25 ./usr/share/augustus/scripts/filter-ppx.pl
-rwxr-xr-x root/root       850 2016-12-11 10:25 ./usr/share/augustus/scripts/filterGenes.pl
-rwxr-xr-x root/root      2188 2016-12-11 10:25 ./usr/share/augustus/scripts/filterGenesIn_mRNAname.pl
-rwxr-xr-x root/root      1716 2016-12-11 10:25 ./usr/share/augustus/scripts/filterGenesOut_mRNAname.pl
-rwxr-xr-x root/root      1122 2016-12-11 10:25 ./usr/share/augustus/scripts/filterInFrameStopCodons.pl
-rwxr-xr-x root/root      2923 2016-12-11 10:25 ./usr/share/augustus/scripts/filterMaf.pl
-rwxr-xr-x root/root     17619 2016-12-11 10:25 ./usr/share/augustus/scripts/filterPSL.pl
-rwxr-xr-x root/root      4465 2016-12-11 10:25 ./usr/share/augustus/scripts/filterShrimp.pl
-rwxr-xr-x root/root      2081 2016-12-11 10:25 ./usr/share/augustus/scripts/filterSpliceHints.pl
-rwxr-xr-x root/root      3098 2016-12-11 10:25 ./usr/share/augustus/scripts/gbSmallDNA2gff.pl
-rw-r--r-- root/root      8078 2016-12-11 10:25 ./usr/share/augustus/scripts/gbrowse.conf
-rwxr-xr-x root/root      3769 2016-12-11 10:25 ./usr/share/augustus/scripts/gbrowseold2gff3.pl
-rwxr-xr-x root/root      7331 2016-12-11 10:25 ./usr/share/augustus/scripts/getAnnoFasta.pl
-rwxr-xr-x root/root     16996 2016-12-11 10:25 ./usr/share/augustus/scripts/gff2gbSmallDNA.pl
-rw-r--r-- root/root      1758 2016-12-11 10:25 ./usr/share/augustus/scripts/gff2ps_mycustom
-rwxr-xr-x root/root      4074 2016-12-11 10:25 ./usr/share/augustus/scripts/gffGetmRNA.pl
-rwxr-xr-x root/root      3109 2016-12-11 10:25 ./usr/share/augustus/scripts/gp2othergp.pl
-rwxr-xr-x root/root      9915 2016-12-11 10:25 ./usr/share/augustus/scripts/gtf2bed.pl
-rwxr-xr-x root/root     14401 2016-12-11 10:25 ./usr/share/augustus/scripts/gtf2gff.pl
-rwxr-xr-x root/root     12923 2016-12-11 10:25 ./usr/share/augustus/scripts/hal2maf_split.pl
-rw-r--r-- root/root      8166 2016-12-11 10:25 ./usr/share/augustus/scripts/helpMod.pm
-rwxr-xr-x root/root      4516 2016-12-11 10:25 ./usr/share/augustus/scripts/intron2exex.pl
-rwxr-xr-x root/root      1427 2016-12-11 10:25 ./usr/share/augustus/scripts/joinPeptides.pl
-rwxr-xr-x root/root      8749 2016-12-11 10:25 ./usr/share/augustus/scripts/join_aug_pred.pl
-rwxr-xr-x root/root      1229 2016-12-11 10:25 ./usr/share/augustus/scripts/join_mult_hints.pl
-rwxr-xr-x root/root      3469 2016-12-11 10:25 ./usr/share/augustus/scripts/maf2conswig.pl
-rwxr-xr-x root/root       468 2016-12-11 10:25 ./usr/share/augustus/scripts/makeMatchLists.pl
-rwxr-xr-x root/root     16749 2016-12-11 10:25 ./usr/share/augustus/scripts/makeUtrTrainingSet.pl
-rwxr-xr-x root/root      1658 2016-12-11 10:25 ./usr/share/augustus/scripts/maskNregions.pl
-rwxr-xr-x root/root      2015 2016-12-11 10:25 ./usr/share/augustus/scripts/moveParameters.pl
-rwxr-xr-x root/root     20693 2016-12-11 10:25 ./usr/share/augustus/scripts/msa2prfl.pl
-rwxr-xr-x root/root      7113 2016-12-11 10:25 ./usr/share/augustus/scripts/new_species.pl
-rwxr-xr-x root/root      7092 2016-12-11 10:25 ./usr/share/augustus/scripts/opt_init_and_term_probs.pl
-rwxr-xr-x root/root     65114 2016-12-11 10:25 ./usr/share/augustus/scripts/optimize_augustus.pl
-rwxr-xr-x root/root      3606 2016-12-11 10:25 ./usr/share/augustus/scripts/parseSim4Output.pl
-rwxr-xr-x root/root     17132 2016-12-11 10:25 ./usr/share/augustus/scripts/partition_gtf2gb.pl
-rwxr-xr-x root/root      2108 2016-12-11 10:25 ./usr/share/augustus/scripts/pasapolyA2hints.pl
-rwxr-xr-x root/root      3369 2016-12-11 10:25 ./usr/share/augustus/scripts/peptides2alternatives.pl
-rwxr-xr-x root/root      6792 2016-12-11 10:25 ./usr/share/augustus/scripts/peptides2hints.pl
-rwxr-xr-x root/root      2761 2016-12-11 10:25 ./usr/share/augustus/scripts/phastconsDB2hints.pl
-rwxr-xr-x root/root      2330 2016-12-11 10:25 ./usr/share/augustus/scripts/polyA2hints.pl
-rwxr-xr-x root/root     10571 2016-12-11 10:25 ./usr/share/augustus/scripts/prints2prfl.pl
-rwxr-xr-x root/root      8032 2016-12-11 10:25 ./usr/share/augustus/scripts/pslMap.pl
-rwxr-xr-x root/root      1689 2016-12-11 10:25 ./usr/share/augustus/scripts/randomSplit.pl
-rwxr-xr-x root/root       584 2016-12-11 10:25 ./usr/share/augustus/scripts/ratewig.pl
-rwxr-xr-x root/root      1946 2016-12-11 10:25 ./usr/share/augustus/scripts/retroDB2hints.pl
-rwxr-xr-x root/root      1403 2016-12-11 10:25 ./usr/share/augustus/scripts/rmRedundantHints.pl
-rwxr-xr-x root/root       723 2016-12-11 10:25 ./usr/share/augustus/scripts/runAllSim4.pl
-rwxr-xr-x root/root      4992 2016-12-11 10:25 ./usr/share/augustus/scripts/samMap.pl
-rwxr-xr-x root/root      1159 2016-12-11 10:25 ./usr/share/augustus/scripts/scipiogff2gff.pl
-rwxr-xr-x root/root      1215 2016-12-11 10:25 ./usr/share/augustus/scripts/simpleFastaHeaders.pl
-rwxr-xr-x root/root      2598 2016-12-11 10:25 ./usr/share/augustus/scripts/simplifyFastaHeaders.pl
-rwxr-xr-x root/root      1792 2016-12-11 10:25 ./usr/share/augustus/scripts/splitMfasta.pl
-rwxr-xr-x root/root       861 2016-12-11 10:25 ./usr/share/augustus/scripts/split_wiggle.pl
-rwxr-xr-x root/root      2158 2016-12-11 10:25 ./usr/share/augustus/scripts/summarizeACGTcontent.pl
-rwxr-xr-x root/root     19253 2016-12-11 10:25 ./usr/share/augustus/scripts/transMap2hints.pl
-rwxr-xr-x root/root      1964 2016-12-11 10:25 ./usr/share/augustus/scripts/uniquePeptides.pl
-rwxr-xr-x root/root      2395 2016-12-11 10:25 ./usr/share/augustus/scripts/utrgff2gbrowse.pl
-rw-r--r-- root/root      2706 2016-12-11 10:25 ./usr/share/augustus/scripts/webserver-results.body
-rw-r--r-- root/root      2134 2016-12-11 10:25 ./usr/share/augustus/scripts/webserver-results.head
-rw-r--r-- root/root      3105 2016-12-11 10:25 ./usr/share/augustus/scripts/webserver-results.tail
-rwxr-xr-x root/root      1602 2016-12-11 10:25 ./usr/share/augustus/scripts/weedMaf.pl
-rwxr-xr-x root/root      5374 2016-12-11 10:25 ./usr/share/augustus/scripts/wig2hints.pl
-rwxr-xr-x root/root      2881 2016-12-11 10:25 ./usr/share/augustus/scripts/wigchoose.pl
-rwxr-xr-x root/root     15629 2016-12-11 10:25 ./usr/share/augustus/scripts/writeResultsPage.pl
-rwxr-xr-x root/root      9700 2016-12-11 10:25 ./usr/share/augustus/scripts/yaml2gff.1.4.pl
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/doc/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/doc/augustus/
lrwxrwxrwx root/root         0 2016-12-11 10:25 ./usr/share/doc/augustus/HISTORY.TXT.gz -> changelog.gz
-rw-r--r-- root/root       444 2016-12-11 10:25 ./usr/share/doc/augustus/changelog.Debian.gz
-rw-r--r-- root/root      7259 2016-12-06 14:27 ./usr/share/doc/augustus/changelog.gz
-rw-r--r-- root/root      3128 2016-12-11 10:00 ./usr/share/doc/augustus/copyright
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/man/
drwxr-xr-x root/root         0 2016-12-11 10:25 ./usr/share/man/man1/
-rw-r--r-- root/root       567 2016-12-11 10:25 ./usr/share/man/man1/aln2wig.1.gz
-rw-r--r-- root/root      1665 2016-12-11 10:25 ./usr/share/man/man1/augustus.1.gz
-rw-r--r-- root/root      1500 2016-12-11 10:25 ./usr/share/man/man1/bam2hints.1.gz
-rw-r--r-- root/root       580 2016-12-11 10:25 ./usr/share/man/man1/checkTargetSortedness.1.gz
-rw-r--r-- root/root       694 2016-12-11 10:25 ./usr/share/man/man1/consensusFinder.1.gz
-rw-r--r-- root/root       897 2016-12-11 10:25 ./usr/share/man/man1/curve2hints.1.gz
-rw-r--r-- root/root       684 2016-12-11 10:25 ./usr/share/man/man1/etraining.1.gz
-rw-r--r-- root/root      1323 2016-12-11 10:25 ./usr/share/man/man1/fastBlockSearch.1.gz
-rw-r--r-- root/root      1721 2016-12-11 10:25 ./usr/share/man/man1/filterBam.1.gz
-rw-r--r-- root/root      1483 2016-12-11 10:25 ./usr/share/man/man1/homGeneMapping.1.gz
-rw-r--r-- root/root      2012 2016-12-11 10:25 ./usr/share/man/man1/joingenes.1.gz
-rw-r--r-- root/root       654 2016-12-11 10:25 ./usr/share/man/man1/prepareAlign.1.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 685440
Build-Time: 778
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 524
Job: augustus_3.2.3+dfsg-1
Machine Architecture: armhf
Package: augustus
Package-Time: 1401
Source-Version: 3.2.3+dfsg-1
Space: 685440
Status: successful
Version: 3.2.3+dfsg-1
--------------------------------------------------------------------------------
Finished at 2016-12-22T04:51:21Z
Build needed 00:23:21, 685440k disc space